Homology vs CSM-cDNA |
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Homology vs DNA |
Query= Contig-U06929-1 (Contig-U06929-1Q) /CSM_Contig/Contig-U06929-1Q.Seq.d (726 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU268346) Dictyostelium discoideum vegetative cDNA clone:VS... 426 0.0 3 (AU268347) Dictyostelium discoideum vegetative cDNA clone:VS... 539 0.0 2 (AZ167278) SP_0098_A1_A10_SP6E Strongylocentrotus purpuratus... 48 3e-04 2 (AC181342) Strongylocentrotus purpuratus clone R3-40D8, WORK... 50 4e-04 2 (AC100956) Mus musculus chromosome 7, clone RP23-74B10, comp... 56 0.002 1 (AC140360) Mus musculus BAC clone RP24-241G4 from chromosome... 54 0.007 1 (DD307412) NUCLEIC ACID AND POLYPEPTIDE SEQUENCES FROM LAWSO... 54 0.007 1 (DD307082) NUCLEIC ACID AND POLYPEPTIDE SEQUENCES FROM LAWSO... 54 0.007 1 (DD300861) NUCLEIC ACID AND POLYPEPTIDE SEQUENCES FROM LAWSO... 54 0.007 1 (Z37981) D.discoideum gene for protein kinase. 54 0.007 1 (AC184544) Strongylocentrotus purpuratus clone R3-10M4, WORK... 54 0.007 1 (DY895129) CeleSEQ14874 Cunninghamella elegans pBluescript (... 54 0.007 1 (DY888990) CeleSEQ6449 Cunninghamella elegans pBluescript (E... 54 0.007 1 (BJ425420) Dictyostelium discoideum cDNA clone:ddv55l15, 5' ... 54 0.007 1 (BJ424031) Dictyostelium discoideum cDNA clone:ddv51n02, 5' ... 54 0.007 1 (BJ419698) Dictyostelium discoideum cDNA clone:ddv36l23, 5' ... 54 0.007 1 (BJ419314) Dictyostelium discoideum cDNA clone:ddv35p15, 5' ... 54 0.007 1 (AM180252) Lawsonia intracellularis PHE/MN1-00. 54 0.007 1 (AC180523) Strongylocentrotus purpuratus clone R3-3099D12, W... 44 0.014 3 (AC180924) Strongylocentrotus purpuratus clone R3-3064B18, W... 40 0.019 2 (AC181309) Strongylocentrotus purpuratus clone R3-4017H24, W... 40 0.019 2 (AC179500) Strongylocentrotus purpuratus clone R3-64G09, WOR... 40 0.021 4 (CV695059) SJS_016_60.T7 SJS Schistosoma japonicum cDNA, mRN... 40 0.024 2 (AC090571) Homo sapiens chromosome 8, clone RP11-313J18, com... 52 0.030 1 (AC151387) Callithrix jacchus clone CH259-521K8, WORKING DRA... 52 0.030 1 (AC201303) Strongylocentrotus purpuratus clone R3-16I5, WORK... 52 0.030 1 (AC186935) Callicebus moloch clone LB5-232I2, WORKING DRAFT ... 52 0.030 1 (AC181238) Strongylocentrotus purpuratus clone R3-4010K13, W... 52 0.030 1 (AC181110) Strongylocentrotus purpuratus clone R3-3043B23, W... 52 0.030 1 (AC180473) Strongylocentrotus purpuratus clone R3-3100E09, W... 52 0.030 1 (AC179900) Strongylocentrotus purpuratus clone R3-1003N13, W... 52 0.030 1 (AC178907) Strongylocentrotus purpuratus clone R3-3114O12, W... 52 0.030 1 (AC178105) Strongylocentrotus purpuratus clone R3-3073D12, W... 52 0.030 1 (AC174107) Strongylocentrotus purpuratus clone R3-3083B18, W... 52 0.030 1 (AC173717) Strongylocentrotus purpuratus clone R3-1024A8, WO... 52 0.030 1 (AC168612) Strongylocentrotus purpuratus clone R3-3046H17, W... 52 0.030 1 (AC168530) Strongylocentrotus purpuratus clone R3-3091P17, W... 52 0.030 1 (AC168501) Strongylocentrotus purpuratus clone R3-3117D11, W... 52 0.030 1 (AC168373) Strongylocentrotus purpuratus clone R3-4013I14, W... 52 0.030 1 (AC023045) Homo sapiens chromosome 8 clone RP11-313J18, WORK... 52 0.030 1 (AC008025) Homo sapiens clone RP11-45I11, WORKING DRAFT SEQU... 52 0.030 1 (DX754288) 2253980 VV03 Ustilago maydis genomic clone 906810... 52 0.030 1 (DX700388) 2315242 VV03 Ustilago maydis genomic clone 100545... 52 0.030 1 (DX679742) 2349885 VV03 Ustilago maydis genomic clone 102193... 52 0.030 1 (DX665304) 2300896 VV02 Ustilago maydis genomic clone 937431... 52 0.030 1 (DX621724) 2267237 VV02 Ustilago maydis genomic clone 833325... 52 0.030 1 (EC050578) 3484588 BG03 Ustilago maydis cDNA clone 1468355, ... 52 0.030 1 (EC047009) 3303882 BG03 Ustilago maydis cDNA clone 1427732, ... 52 0.030 1 (EC045802) 3477996 BG03 Ustilago maydis cDNA clone 1468355, ... 52 0.030 1 (EC041056) 3252797 BG03 Ustilago maydis cDNA clone 1426297, ... 52 0.030 1 (FF312611) 279385552 Pea aphid whole body normalized full le... 52 0.030 1 (EY385980) CAXA5978.fwd CAXA Helobdella robusta Subtracted L... 52 0.030 1 (EY377341) CAXA16664.fwd CAXA Helobdella robusta Subtracted ... 52 0.030 1 (EY375071) CAXA1543.fwd CAXA Helobdella robusta Subtracted L... 52 0.030 1 (EY355788) CAWZ4002.fwd CAWZ Helobdella robusta Primary Late... 52 0.030 1 (EX641958) 256639653 Pea aphid whole body normalized full le... 52 0.030 1 (EX606668) 255357350 Pea aphid whole body normalized full le... 52 0.030 1 (AC177491) Strongylocentrotus purpuratus clone R3-61N20, WOR... 50 0.036 4 (AC178809) Strongylocentrotus purpuratus clone R3-29J10, WOR... 48 0.053 3 (AC129099) Canis familiaris clone rp81-289m11, complete sequ... 44 0.065 2 (EK135420) 1093012218056 Global-Ocean-Sampling_GS-31-01-01-1... 38 0.086 2 (AC176029) Strongylocentrotus purpuratus clone R3-18E7, WORK... 50 0.11 2 (BX005041) Zebrafish DNA sequence from clone DKEY-38L12 in l... 50 0.12 1 (AC160645) Gallus gallus BAC clone CH261-21L11 from chromoso... 50 0.12 1 (AL606935) Mouse DNA sequence from clone RP23-204N19 on chro... 50 0.12 1 (AC183804) Pan troglodytes BAC clone CH251-67P16 from chromo... 50 0.12 1 (EF453223) Strongylocentrotus franciscanus Spec1b region, ge... 50 0.12 1 (AC010330) Homo sapiens chromosome 19 clone CTD-2657C13, com... 50 0.12 1 (AC131460) Rattus norvegicus clone CH230-462K2, WORKING DRAF... 50 0.12 1 (AC105479) Rattus norvegicus clone CH230-210P19, WORKING DRA... 50 0.12 1 (AC097187) Rattus norvegicus clone CH230-101L21, *** SEQUENC... 50 0.12 1 (AC201583) Strongylocentrotus purpuratus clone R3-4014G7, WO... 50 0.12 1 (AC201175) Strongylocentrotus purpuratus clone R3-14M2, WORK... 50 0.12 1 (AC201008) Strongylocentrotus purpuratus clone R3-12F3, WORK... 50 0.12 1 (AC181821) Strongylocentrotus purpuratus clone R3-1023D23, W... 50 0.12 1 (AC181714) Strongylocentrotus purpuratus clone R3-1039K24, W... 50 0.12 1 (AC181398) Strongylocentrotus purpuratus clone R3-4J19, WORK... 50 0.12 1 (AC181313) Strongylocentrotus purpuratus clone R3-4017K15, W... 50 0.12 1 (AC180480) Strongylocentrotus purpuratus clone R3-3100M17, W... 50 0.12 1 (AC180437) Strongylocentrotus purpuratus clone R3-3009O14, W... 50 0.12 1 (AC179869) Strongylocentrotus purpuratus clone R3-1007A24, W... 50 0.12 1 (AC179763) Strongylocentrotus purpuratus clone R3-1016L20, W... 50 0.12 1 (AC179383) Strongylocentrotus purpuratus clone R3-1101L14, W... 50 0.12 1 (AC178500) Strongylocentrotus purpuratus clone R3-3032L5, WO... 50 0.12 1 (AC178482) Strongylocentrotus purpuratus clone R3-3033I17, W... 50 0.12 1 (AC178414) Strongylocentrotus purpuratus clone R3-3113A08, W... 50 0.12 1 (AC178161) Strongylocentrotus purpuratus clone R3-1116O20, W... 50 0.12 1 (AC178129) Strongylocentrotus purpuratus clone R3-1117C11, W... 50 0.12 1 (AC177779) Strongylocentrotus purpuratus clone R3-1002J23, W... 50 0.12 1 (AC177288) Strongylocentrotus purpuratus clone R3-1033F10, W... 50 0.12 1 (AC177069) Strongylocentrotus purpuratus clone R3-4004J14, W... 50 0.12 1 (AC176615) Strongylocentrotus purpuratus clone R3-3079L21, W... 50 0.12 1 (AC172403) Strongylocentrotus purpuratus clone R3-14L2, WORK... 50 0.12 1 (AC168677) Strongylocentrotus purpuratus clone R3-3015B8, WO... 50 0.12 1 (AC168246) Strongylocentrotus purpuratus clone R3-1001L1, WO... 50 0.12 1 (AZ926352) 476.dio49h07.s1 Saccharomyces castellii NRRL Y-12... 50 0.12 1 (AZ711377) RPCI-24-119G7.TJ RPCI-24 Mus musculus genomic clo... 50 0.12 1 (CZ703839) OC__Ba0020L12.r OC__Ba Oryza coarctata genomic cl... 50 0.12 1 (EB425973) KF8C.104N11F.051214T7 KF8 Nicotiana tabacum cDNA ... 50 0.12 1 (EB425824) KF8C.104G10F.051214T7 KF8 Nicotiana tabacum cDNA ... 50 0.12 1
>(AU268346) Dictyostelium discoideum vegetative cDNA clone:VSI223, 5' end single read. Length = 571
Score = 426 bits (215), Expect(3) = 0.0 Identities = 215/215 (100%) Strand = Plus / Plus
Query: 129 caccatatgttctttcaattcggtaagaatacattcttatcatcattagaaatcacttca 188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 128 caccatatgttctttcaattcggtaagaatacattcttatcatcattagaaatcacttca 187
Query: 189 cgtttaggtgatatgtcacgttatttctctgatcattattttagtaataaagttttaaat 248 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 188 cgtttaggtgatatgtcacgttatttctctgatcattattttagtaataaagttttaaat 247
Query: 249 agtgataatgaatcaaattcatttagtagaagtatgagtgtaaataataatttaaatgaa 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 248 agtgataatgaatcaaattcatttagtagaagtatgagtgtaaataataatttaaatgaa 307
Query: 309 tcattatcatcatcgtcatcaccatcagctattag 343 ||||||||||||||||||||||||||||||||||| Sbjct: 308 tcattatcatcatcgtcatcaccatcagctattag 342
Score = 379 bits (191), Expect(3) = 0.0 Identities = 191/191 (100%) Strand = Plus / Plus
Query: 382 gaccaccaatattaggattaccatttttatttgattataaaaatagaattaccagaggat 441 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 381 gaccaccaatattaggattaccatttttatttgattataaaaatagaattaccagaggat 440
Query: 442 caagattctttgaaactattcattataagatcgttcatgtaacttctgcaactgaatttg 501 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 441 caagattctttgaaactattcattataagatcgttcatgtaacttctgcaactgaatttg 500
Query: 502 gtattagaagaattagtaaattgtatggtacaaaatggcaattagaaattggtttaaaac 561 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 501 gtattagaagaattagtaaattgtatggtacaaaatggcaattagaaattggtttaaaac 560
Query: 562 atcaaataact 572 ||||||||||| Sbjct: 561 atcaaataact 571
Score = 254 bits (128), Expect(3) = 0.0 Identities = 128/128 (100%) Strand = Plus / Plus
Query: 1 agttcattcatttagtcgtatgatagtatcaccatttataaatccaaaattcacttattt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 agttcattcatttagtcgtatgatagtatcaccatttataaatccaaaattcacttattt 60
Query: 61 cggtagatatggttggttaaaatttgatatcccaatcaacaagaaatcaaatcgtatagt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 cggtagatatggttggttaaaatttgatatcccaatcaacaagaaatcaaatcgtatagt 120
Query: 121 tttaaaac 128 |||||||| Sbjct: 121 tttaaaac 128
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 788,349,296 Number of extensions: 49184817 Number of successful extensions: 4277268 Number of sequences better than 10.0: 1589 Length of query: 726 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 702 Effective length of database: 97,308,875,965 Effective search space: 68310830927430 Effective search space used: 68310830927430 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
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Homology vs Protein |
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