Contig-U06929-1
Contig ID Contig-U06929-1
Contig update 2001. 8.30
Contig sequence
>Contig-U06929-1 (Contig-U06929-1Q) /CSM_Contig/Contig-U06929-1Q.Seq.d
AGTTCATTCATTTAGTCGTATGATAGTATCACCATTTATAAATCCAAAAT
TCACTTATTTCGGTAGATATGGTTGGTTAAAATTTGATATCCCAATCAAC
AAGAAATCAAATCGTATAGTTTTAAAACCACCATATGTTCTTTCAATTCG
GTAAGAATACATTCTTATCATCATTAGAAATCACTTCACGTTTAGGTGAT
ATGTCACGTTATTTCTCTGATCATTATTTTAGTAATAAAGTTTTAAATAG
TGATAATGAATCAAATTCATTTAGTAGAAGTATGAGTGTAAATAATAATT
TAAATGAATCATTATCATCATCGTCATCACCATCAGCTATTAGTAATAAT
AGTAATAATAGTAATAATAATGATGATAATAGACCACCAATATTAGGATT
ACCATTTTTATTTGATTATAAAAATAGAATTACCAGAGGATCAAGATTCT
TTGAAACTATTCATTATAAGATCGTTCATGTAACTTCTGCAACTGAATTT
GGTATTAGAAGAATTAGTAAATTGTATGGTACAAAATGGCAATTAGAAAT
TGGTTTAAAACATCAAATAACTCAAAGTGGTGCACTTCAATGTTTATTCA
CTCATACAATTGGCCAAACTACAATTTTTGGTTTAAGCTTTGGTTTTGAT
ATGTAATTTTGTAATAATTAATTACACATCAAAAATTATATTCAAATAAA
TTAAATTAAATTAAATTAAATAAATA

Gap no gap
Contig length 726
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 4252576
End point 4251850
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U06929
List of clone(s)

est1=VSI223E,1,727
Translated Amino Acid sequence
fihlvv**yhhl*iqnslisvdmvg*nlisqstrnqiv*f*NHHMFFQFGKNTFLSSLEI
TSRLGDMSRYFSDHYFSNKVLNSDNESNSFSRSMSVNNNLNESLSSSSSPSAISNNSNNS
NNNDDNRPPILGLPFLFDYKNRITRGSRFFETIHYKIVHVTSATEFGIRRISKLYGTKWQ
LEIGLKHQITQSGALQCLFTHTIGQTTIFGLSFGFDM*fcnn*lhiknyiqin*ikln*i
n


Translated Amino Acid sequence (All Frames)
Frame A:
ssfi*sydsitiykskihlfr*iwlvki*ypnqqeiksysfktticsfnsvrihsyhh*k
slhv*vichvisliiilvikf*ivimnqihlvev*v*iii*mnhyhhrhhhqllviivii
viimmiidhqy*dyhfyliikielpedqdslklfiirsfm*llqlnlvleelvncmvqng
n*klv*nik*lkvvhfnvysliqlaklqflv*alvlicnfviinytskiifk*ikln*ik
*i


Frame B:
vhsfsrmivspfinpkftyfgrygwlkfdipinkksnrivlkppyvlsir*eyiliiirn
hftfr*yvtlfl*slf***sfk****ikfi**kyeck**fk*iiiiivitisy*******
*******ttniritifi*l*k*nyqrikil*nysl*drscnfcn*iwy*kn**ivwykma
irnwfktsnnskwctsmfihsynwpnynfwfklwf*yvil**lithqklysnkln*ikln
k


Frame C:
fihlvv**yhhl*iqnslisvdmvg*nlisqstrnqiv*f*NHHMFFQFGKNTFLSSLEI
TSRLGDMSRYFSDHYFSNKVLNSDNESNSFSRSMSVNNNLNESLSSSSSPSAISNNSNNS
NNNDDNRPPILGLPFLFDYKNRITRGSRFFETIHYKIVHVTSATEFGIRRISKLYGTKWQ
LEIGLKHQITQSGALQCLFTHTIGQTTIFGLSFGFDM*fcnn*lhiknyiqin*ikln*i
n


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U06929-1 (Contig-U06929-1Q)
/CSM_Contig/Contig-U06929-1Q.Seq.d
(726 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U06929-1 (Contig-U06929-1Q) /CSM_Contig/Conti... 674 0.0
Contig-U11983-1 (Contig-U11983-1Q) /CSM_Contig/Conti... 42 8e-04
Contig-U10756-1 (Contig-U10756-1Q) /CSM_Contig/Conti... 42 8e-04
Contig-U08455-1 (Contig-U08455-1Q) /CSM_Contig/Conti... 42 8e-04
Contig-U05902-1 (Contig-U05902-1Q) /CSM_Contig/Conti... 42 8e-04
Contig-U13880-1 (Contig-U13880-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U13408-1 (Contig-U13408-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U13284-1 (Contig-U13284-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U11980-1 (Contig-U11980-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U11360-1 (Contig-U11360-1Q) /CSM_Contig/Conti... 40 0.003

>Contig-U06929-1 (Contig-U06929-1Q) /CSM_Contig/Contig-U06929-1Q.Seq.d
Length = 726

Score = 674 bits (340), Expect = 0.0
Identities = 340/340 (100%)
Strand = Plus / Plus


Query: 1 agttcattcatttagtcgtatgatagtatcaccatttataaatccaaaattcacttattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agttcattcatttagtcgtatgatagtatcaccatttataaatccaaaattcacttattt 60


Query: 61 cggtagatatggttggttaaaatttgatatcccaatcaacaagaaatcaaatcgtatagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cggtagatatggttggttaaaatttgatatcccaatcaacaagaaatcaaatcgtatagt 120


Query: 121 tttaaaaccaccatatgttctttcaattcggtaagaatacattcttatcatcattagaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttaaaaccaccatatgttctttcaattcggtaagaatacattcttatcatcattagaaa 180


Query: 181 tcacttcacgtttaggtgatatgtcacgttatttctctgatcattattttagtaataaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcacttcacgtttaggtgatatgtcacgttatttctctgatcattattttagtaataaag 240


Query: 241 ttttaaatagtgataatgaatcaaattcatttagtagaagtatgagtgtaaataataatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttttaaatagtgataatgaatcaaattcatttagtagaagtatgagtgtaaataataatt 300


Query: 301 taaatgaatcattatcatcatcgtcatcaccatcagctat 340
||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taaatgaatcattatcatcatcgtcatcaccatcagctat 340


Score = 589 bits (297), Expect = e-168
Identities = 297/297 (100%)
Strand = Plus / Plus


Query: 382 gaccaccaatattaggattaccatttttatttgattataaaaatagaattaccagaggat 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gaccaccaatattaggattaccatttttatttgattataaaaatagaattaccagaggat 441


Query: 442 caagattctttgaaactattcattataagatcgttcatgtaacttctgcaactgaatttg 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 caagattctttgaaactattcattataagatcgttcatgtaacttctgcaactgaatttg 501


Query: 502 gtattagaagaattagtaaattgtatggtacaaaatggcaattagaaattggtttaaaac 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gtattagaagaattagtaaattgtatggtacaaaatggcaattagaaattggtttaaaac 561


Query: 562 atcaaataactcaaagtggtgcacttcaatgtttattcactcatacaattggccaaacta 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 atcaaataactcaaagtggtgcacttcaatgtttattcactcatacaattggccaaacta 621


Query: 622 caatttttggtttaagctttggttttgatatgtaattttgtaataattaattacaca 678
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 caatttttggtttaagctttggttttgatatgtaattttgtaataattaattacaca 678


>Contig-U11983-1 (Contig-U11983-1Q) /CSM_Contig/Contig-U11983-1Q.Seq.d
Length = 1862

Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Plus


Query: 307 aatcattatcatcatcgtcatcaccatca 335
|||||| |||||||||||||||| |||||
Sbjct: 38 aatcatcatcatcatcgtcatcatcatca 66


Score = 30.2 bits (15), Expect = 3.1
Identities = 18/19 (94%)
Strand = Plus / Minus


Query: 297 aatttaaatgaatcattat 315
||||| |||||||||||||
Sbjct: 983 aatttcaatgaatcattat 965


>Contig-U10756-1 (Contig-U10756-1Q) /CSM_Contig/Contig-U10756-1Q.Seq.d
Length = 1660

Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus


Query: 308 atcattatcatcatcgtcatcacca 332
||||| |||||||||||||||||||
Sbjct: 700 atcatcatcatcatcgtcatcacca 724


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,379
Number of Sequences: 6905
Number of extensions: 13379
Number of successful extensions: 1890
Number of sequences better than 10.0: 342
length of query: 726
length of database: 5,674,871
effective HSP length: 16
effective length of query: 710
effective length of database: 5,564,391
effective search space: 3950717610
effective search space used: 3950717610
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.11
Homology vs DNA
Query= Contig-U06929-1 (Contig-U06929-1Q) /CSM_Contig/Contig-U06929-1Q.Seq.d
(726 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU268346) Dictyostelium discoideum vegetative cDNA clone:VS... 426 0.0 3
(AU268347) Dictyostelium discoideum vegetative cDNA clone:VS... 539 0.0 2
(AZ167278) SP_0098_A1_A10_SP6E Strongylocentrotus purpuratus... 48 3e-04 2
(AC181342) Strongylocentrotus purpuratus clone R3-40D8, WORK... 50 4e-04 2
(AC100956) Mus musculus chromosome 7, clone RP23-74B10, comp... 56 0.002 1
(AC140360) Mus musculus BAC clone RP24-241G4 from chromosome... 54 0.007 1
(DD307412) NUCLEIC ACID AND POLYPEPTIDE SEQUENCES FROM LAWSO... 54 0.007 1
(DD307082) NUCLEIC ACID AND POLYPEPTIDE SEQUENCES FROM LAWSO... 54 0.007 1
(DD300861) NUCLEIC ACID AND POLYPEPTIDE SEQUENCES FROM LAWSO... 54 0.007 1
(Z37981) D.discoideum gene for protein kinase. 54 0.007 1
(AC184544) Strongylocentrotus purpuratus clone R3-10M4, WORK... 54 0.007 1
(DY895129) CeleSEQ14874 Cunninghamella elegans pBluescript (... 54 0.007 1
(DY888990) CeleSEQ6449 Cunninghamella elegans pBluescript (E... 54 0.007 1
(BJ425420) Dictyostelium discoideum cDNA clone:ddv55l15, 5' ... 54 0.007 1
(BJ424031) Dictyostelium discoideum cDNA clone:ddv51n02, 5' ... 54 0.007 1
(BJ419698) Dictyostelium discoideum cDNA clone:ddv36l23, 5' ... 54 0.007 1
(BJ419314) Dictyostelium discoideum cDNA clone:ddv35p15, 5' ... 54 0.007 1
(AM180252) Lawsonia intracellularis PHE/MN1-00. 54 0.007 1
(AC180523) Strongylocentrotus purpuratus clone R3-3099D12, W... 44 0.014 3
(AC180924) Strongylocentrotus purpuratus clone R3-3064B18, W... 40 0.019 2
(AC181309) Strongylocentrotus purpuratus clone R3-4017H24, W... 40 0.019 2
(AC179500) Strongylocentrotus purpuratus clone R3-64G09, WOR... 40 0.021 4
(CV695059) SJS_016_60.T7 SJS Schistosoma japonicum cDNA, mRN... 40 0.024 2
(AC090571) Homo sapiens chromosome 8, clone RP11-313J18, com... 52 0.030 1
(AC151387) Callithrix jacchus clone CH259-521K8, WORKING DRA... 52 0.030 1
(AC201303) Strongylocentrotus purpuratus clone R3-16I5, WORK... 52 0.030 1
(AC186935) Callicebus moloch clone LB5-232I2, WORKING DRAFT ... 52 0.030 1
(AC181238) Strongylocentrotus purpuratus clone R3-4010K13, W... 52 0.030 1
(AC181110) Strongylocentrotus purpuratus clone R3-3043B23, W... 52 0.030 1
(AC180473) Strongylocentrotus purpuratus clone R3-3100E09, W... 52 0.030 1
(AC179900) Strongylocentrotus purpuratus clone R3-1003N13, W... 52 0.030 1
(AC178907) Strongylocentrotus purpuratus clone R3-3114O12, W... 52 0.030 1
(AC178105) Strongylocentrotus purpuratus clone R3-3073D12, W... 52 0.030 1
(AC174107) Strongylocentrotus purpuratus clone R3-3083B18, W... 52 0.030 1
(AC173717) Strongylocentrotus purpuratus clone R3-1024A8, WO... 52 0.030 1
(AC168612) Strongylocentrotus purpuratus clone R3-3046H17, W... 52 0.030 1
(AC168530) Strongylocentrotus purpuratus clone R3-3091P17, W... 52 0.030 1
(AC168501) Strongylocentrotus purpuratus clone R3-3117D11, W... 52 0.030 1
(AC168373) Strongylocentrotus purpuratus clone R3-4013I14, W... 52 0.030 1
(AC023045) Homo sapiens chromosome 8 clone RP11-313J18, WORK... 52 0.030 1
(AC008025) Homo sapiens clone RP11-45I11, WORKING DRAFT SEQU... 52 0.030 1
(DX754288) 2253980 VV03 Ustilago maydis genomic clone 906810... 52 0.030 1
(DX700388) 2315242 VV03 Ustilago maydis genomic clone 100545... 52 0.030 1
(DX679742) 2349885 VV03 Ustilago maydis genomic clone 102193... 52 0.030 1
(DX665304) 2300896 VV02 Ustilago maydis genomic clone 937431... 52 0.030 1
(DX621724) 2267237 VV02 Ustilago maydis genomic clone 833325... 52 0.030 1
(EC050578) 3484588 BG03 Ustilago maydis cDNA clone 1468355, ... 52 0.030 1
(EC047009) 3303882 BG03 Ustilago maydis cDNA clone 1427732, ... 52 0.030 1
(EC045802) 3477996 BG03 Ustilago maydis cDNA clone 1468355, ... 52 0.030 1
(EC041056) 3252797 BG03 Ustilago maydis cDNA clone 1426297, ... 52 0.030 1
(FF312611) 279385552 Pea aphid whole body normalized full le... 52 0.030 1
(EY385980) CAXA5978.fwd CAXA Helobdella robusta Subtracted L... 52 0.030 1
(EY377341) CAXA16664.fwd CAXA Helobdella robusta Subtracted ... 52 0.030 1
(EY375071) CAXA1543.fwd CAXA Helobdella robusta Subtracted L... 52 0.030 1
(EY355788) CAWZ4002.fwd CAWZ Helobdella robusta Primary Late... 52 0.030 1
(EX641958) 256639653 Pea aphid whole body normalized full le... 52 0.030 1
(EX606668) 255357350 Pea aphid whole body normalized full le... 52 0.030 1
(AC177491) Strongylocentrotus purpuratus clone R3-61N20, WOR... 50 0.036 4
(AC178809) Strongylocentrotus purpuratus clone R3-29J10, WOR... 48 0.053 3
(AC129099) Canis familiaris clone rp81-289m11, complete sequ... 44 0.065 2
(EK135420) 1093012218056 Global-Ocean-Sampling_GS-31-01-01-1... 38 0.086 2
(AC176029) Strongylocentrotus purpuratus clone R3-18E7, WORK... 50 0.11 2
(BX005041) Zebrafish DNA sequence from clone DKEY-38L12 in l... 50 0.12 1
(AC160645) Gallus gallus BAC clone CH261-21L11 from chromoso... 50 0.12 1
(AL606935) Mouse DNA sequence from clone RP23-204N19 on chro... 50 0.12 1
(AC183804) Pan troglodytes BAC clone CH251-67P16 from chromo... 50 0.12 1
(EF453223) Strongylocentrotus franciscanus Spec1b region, ge... 50 0.12 1
(AC010330) Homo sapiens chromosome 19 clone CTD-2657C13, com... 50 0.12 1
(AC131460) Rattus norvegicus clone CH230-462K2, WORKING DRAF... 50 0.12 1
(AC105479) Rattus norvegicus clone CH230-210P19, WORKING DRA... 50 0.12 1
(AC097187) Rattus norvegicus clone CH230-101L21, *** SEQUENC... 50 0.12 1
(AC201583) Strongylocentrotus purpuratus clone R3-4014G7, WO... 50 0.12 1
(AC201175) Strongylocentrotus purpuratus clone R3-14M2, WORK... 50 0.12 1
(AC201008) Strongylocentrotus purpuratus clone R3-12F3, WORK... 50 0.12 1
(AC181821) Strongylocentrotus purpuratus clone R3-1023D23, W... 50 0.12 1
(AC181714) Strongylocentrotus purpuratus clone R3-1039K24, W... 50 0.12 1
(AC181398) Strongylocentrotus purpuratus clone R3-4J19, WORK... 50 0.12 1
(AC181313) Strongylocentrotus purpuratus clone R3-4017K15, W... 50 0.12 1
(AC180480) Strongylocentrotus purpuratus clone R3-3100M17, W... 50 0.12 1
(AC180437) Strongylocentrotus purpuratus clone R3-3009O14, W... 50 0.12 1
(AC179869) Strongylocentrotus purpuratus clone R3-1007A24, W... 50 0.12 1
(AC179763) Strongylocentrotus purpuratus clone R3-1016L20, W... 50 0.12 1
(AC179383) Strongylocentrotus purpuratus clone R3-1101L14, W... 50 0.12 1
(AC178500) Strongylocentrotus purpuratus clone R3-3032L5, WO... 50 0.12 1
(AC178482) Strongylocentrotus purpuratus clone R3-3033I17, W... 50 0.12 1
(AC178414) Strongylocentrotus purpuratus clone R3-3113A08, W... 50 0.12 1
(AC178161) Strongylocentrotus purpuratus clone R3-1116O20, W... 50 0.12 1
(AC178129) Strongylocentrotus purpuratus clone R3-1117C11, W... 50 0.12 1
(AC177779) Strongylocentrotus purpuratus clone R3-1002J23, W... 50 0.12 1
(AC177288) Strongylocentrotus purpuratus clone R3-1033F10, W... 50 0.12 1
(AC177069) Strongylocentrotus purpuratus clone R3-4004J14, W... 50 0.12 1
(AC176615) Strongylocentrotus purpuratus clone R3-3079L21, W... 50 0.12 1
(AC172403) Strongylocentrotus purpuratus clone R3-14L2, WORK... 50 0.12 1
(AC168677) Strongylocentrotus purpuratus clone R3-3015B8, WO... 50 0.12 1
(AC168246) Strongylocentrotus purpuratus clone R3-1001L1, WO... 50 0.12 1
(AZ926352) 476.dio49h07.s1 Saccharomyces castellii NRRL Y-12... 50 0.12 1
(AZ711377) RPCI-24-119G7.TJ RPCI-24 Mus musculus genomic clo... 50 0.12 1
(CZ703839) OC__Ba0020L12.r OC__Ba Oryza coarctata genomic cl... 50 0.12 1
(EB425973) KF8C.104N11F.051214T7 KF8 Nicotiana tabacum cDNA ... 50 0.12 1
(EB425824) KF8C.104G10F.051214T7 KF8 Nicotiana tabacum cDNA ... 50 0.12 1

>(AU268346) Dictyostelium discoideum vegetative cDNA clone:VSI223,
5' end single read.
Length = 571

Score = 426 bits (215), Expect(3) = 0.0
Identities = 215/215 (100%)
Strand = Plus / Plus


Query: 129 caccatatgttctttcaattcggtaagaatacattcttatcatcattagaaatcacttca 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 caccatatgttctttcaattcggtaagaatacattcttatcatcattagaaatcacttca 187


Query: 189 cgtttaggtgatatgtcacgttatttctctgatcattattttagtaataaagttttaaat 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 cgtttaggtgatatgtcacgttatttctctgatcattattttagtaataaagttttaaat 247


Query: 249 agtgataatgaatcaaattcatttagtagaagtatgagtgtaaataataatttaaatgaa 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 agtgataatgaatcaaattcatttagtagaagtatgagtgtaaataataatttaaatgaa 307


Query: 309 tcattatcatcatcgtcatcaccatcagctattag 343
|||||||||||||||||||||||||||||||||||
Sbjct: 308 tcattatcatcatcgtcatcaccatcagctattag 342

Score = 379 bits (191), Expect(3) = 0.0
Identities = 191/191 (100%)
Strand = Plus / Plus


Query: 382 gaccaccaatattaggattaccatttttatttgattataaaaatagaattaccagaggat 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaccaccaatattaggattaccatttttatttgattataaaaatagaattaccagaggat 440


Query: 442 caagattctttgaaactattcattataagatcgttcatgtaacttctgcaactgaatttg 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caagattctttgaaactattcattataagatcgttcatgtaacttctgcaactgaatttg 500


Query: 502 gtattagaagaattagtaaattgtatggtacaaaatggcaattagaaattggtttaaaac 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtattagaagaattagtaaattgtatggtacaaaatggcaattagaaattggtttaaaac 560


Query: 562 atcaaataact 572
|||||||||||
Sbjct: 561 atcaaataact 571

Score = 254 bits (128), Expect(3) = 0.0
Identities = 128/128 (100%)
Strand = Plus / Plus


Query: 1 agttcattcatttagtcgtatgatagtatcaccatttataaatccaaaattcacttattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agttcattcatttagtcgtatgatagtatcaccatttataaatccaaaattcacttattt 60


Query: 61 cggtagatatggttggttaaaatttgatatcccaatcaacaagaaatcaaatcgtatagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cggtagatatggttggttaaaatttgatatcccaatcaacaagaaatcaaatcgtatagt 120


Query: 121 tttaaaac 128
||||||||
Sbjct: 121 tttaaaac 128

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 788,349,296
Number of extensions: 49184817
Number of successful extensions: 4277268
Number of sequences better than 10.0: 1589
Length of query: 726
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 702
Effective length of database: 97,308,875,965
Effective search space: 68310830927430
Effective search space used: 68310830927430
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.23
Homology vs Protein
Query= Contig-U06929-1 (Contig-U06929-1Q) /CSM_Contig/Contig-U06929-1Q.Seq.d
(726 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 907,094,833
Number of extensions: 15506886
Number of successful extensions: 29908
Number of sequences better than 10.0: 0
Number of HSP's gapped: 29906
Number of HSP's successfully gapped: 0
Length of query: 242
Length of database: 1,040,966,779
Length adjustment: 125
Effective length of query: 117
Effective length of database: 640,431,154
Effective search space: 74930445018
Effective search space used: 74930445018
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.74 gvh: 0.38 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
36.0 %: cytoplasmic
12.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: endoplasmic reticulum

>> prediction for Contig-U06929-1 is nuc

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0