Contig-U06926-1
Contig ID Contig-U06926-1
Contig update 2001. 8.30
Contig sequence
>Contig-U06926-1 (Contig-U06926-1Q) /CSM_Contig/Contig-U06926-1Q.Seq.d
AAAAGGAAAAATCACATGGTAATATTGGAAAAAATATCTAAAAATAAAAA
AGTACATATAACCATTAAAAAAAAAAAAAAAAATTAAAAAAAAAATTAAA
AAGGTCCTTTTANCCAAAACCAAAACCAAAATTAAAATTAAAANTAAAAN
TAAAANTAAAATTTAAANTAAANCAAAACCAAAATTAAAATTAAAAAAAA
A

Gap no gap
Contig length 201
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 2
Number of EST 2
Link to clone list U06926
List of clone(s)

est1=VSI220F,-2,202
est2=VSI201F,15,202
Translated Amino Acid sequence
kekshgnigkni*k*kstynh*KKKKKLKKKLKRSFXPKPKPKLKLKXKXKXKFKXXQNQ
N*n*kk


Translated Amino Acid sequence (All Frames)
Frame A:
krknhmvilekisknkkvhitikkkkkn*kkn*kgpfxqnqnqn*n*x*x*x*nlx*xkt
kikikkk


Frame B:
kgkitw*ywkkylkikkyi*plkkkkkikkkikkvllxktktkikikxkxkxki*xkxkp
klklkk


Frame C:
kekshgnigkni*k*kstynh*KKKKKLKKKLKRSFXPKPKPKLKLKXKXKXKFKXXQNQ
N*n*kk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U06926-1 (Contig-U06926-1Q)
/CSM_Contig/Contig-U06926-1Q.Seq.d
(201 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U06926-1 (Contig-U06926-1Q) /CSM_Contig/Conti... 56 1e-08
Contig-U02496-1 (Contig-U02496-1Q) /CSM_Contig/Conti... 30 0.82
Contig-U12060-1 (Contig-U12060-1Q) /CSM_Contig/Conti... 28 3.3
Contig-U12034-1 (Contig-U12034-1Q) /CSM_Contig/Conti... 28 3.3
Contig-U11273-1 (Contig-U11273-1Q) /CSM_Contig/Conti... 28 3.3
Contig-U09410-1 (Contig-U09410-1Q) /CSM_Contig/Conti... 28 3.3

>Contig-U06926-1 (Contig-U06926-1Q) /CSM_Contig/Contig-U06926-1Q.Seq.d
Length = 201

Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus


Query: 1 aaaaggaaaaatcacatggtaatattgg 28
||||||||||||||||||||||||||||
Sbjct: 1 aaaaggaaaaatcacatggtaatattgg 28


Score = 30.2 bits (15), Expect = 0.82
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 52 gtacatataaccatt 66
|||||||||||||||
Sbjct: 52 gtacatataaccatt 66


>Contig-U02496-1 (Contig-U02496-1Q) /CSM_Contig/Contig-U02496-1Q.Seq.d
Length = 1040

Score = 30.2 bits (15), Expect = 0.82
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 8 aaaatcacatggtaa 22
|||||||||||||||
Sbjct: 397 aaaatcacatggtaa 411


>Contig-U12060-1 (Contig-U12060-1Q) /CSM_Contig/Contig-U12060-1Q.Seq.d
Length = 1537

Score = 28.2 bits (14), Expect = 3.3
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 9 aaatcacatggtaa 22
||||||||||||||
Sbjct: 721 aaatcacatggtaa 734


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 370
Number of Sequences: 6905
Number of extensions: 370
Number of successful extensions: 76
Number of sequences better than 10.0: 6
length of query: 201
length of database: 5,674,871
effective HSP length: 15
effective length of query: 186
effective length of database: 5,571,296
effective search space: 1036261056
effective search space used: 1036261056
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2005. 1. 1
Homology vs DNA
Query= Contig-U06926-1 (Contig-U06926-1Q) /CSM_Contig/Contig-U06926-1Q.Seq.d
(201 letters)

Database: ddbjhum1.seq; ddbjhum10.seq; ddbjhum11.seq; ddbjhum12.seq;
ddbjhum13.seq; ddbjhum14.seq; ddbjhum15.seq; ddbjhum16.seq;
ddbjhum17.seq; ddbjhum18.seq; ddbjhum19.seq; ddbjhum2.seq;
ddbjhum20.seq; ddbjhum21.seq; ddbjhum22.seq; ddbjhum3.seq;
ddbjhum4.seq; ddbjhum5.seq; ddbjhum6.seq; ddbjhum7.seq; ddbjhum8.seq;
ddbjhum9.seq; /db/DDBJNEW.DATA/a/new_ddbjhum.seq; ddbjpri.seq;
/db/DDBJNEW.DATA/a/new_ddbjpri.seq; ddbjrod1.seq; ddbjrod10.seq;
ddbjrod11.seq; ddbjrod2.seq; ddbjrod3.seq; ddbjrod4.seq; ddbjrod5.seq;
ddbjrod6.seq; ddbjrod7.seq; ddbjrod8.seq; ddbjrod9.seq;
/db/DDBJNEW.DATA/a/new_ddbjrod.seq; ddbjmam.seq;
/db/DDBJNEW.DATA/a/new_ddbjmam.seq; ddbjvrt1.seq; ddbjvrt2.seq;
ddbjvrt3.seq; ddbjvrt4.seq; ddbjvrt5.seq;
/db/DDBJNEW.DATA/a/new_ddbjvrt.seq; ddbjinv1.seq; ddbjinv2.seq;
ddbjinv3.seq; ddbjinv4.seq; ddbjinv5.seq; ddbjinv6.seq;
/db/DDBJNEW.DATA/a/new_ddbjinv.seq; ddbjpln1.seq; ddbjpln10.seq;
ddbjpln11.seq; ddbjpln2.seq; ddbjpln3.seq; ddbjpln4.seq; ddbjpln5.seq;
ddbjpln6.seq; ddbjpln7.seq; ddbjpln8.seq; ddbjpln9.seq;
/db/DDBJNEW.DATA/a/new_ddbjpln.seq; ddbjbct1.seq; ddbjbct2.seq;
ddbjbct3.seq; ddbjbct4.seq; ddbjbct5.seq; ddbjbct6.seq; ddbjbct7.seq;
ddbjbct8.seq; /db/DDBJNEW.DATA/a/new_ddbjbct.seq; ddbjvrl1.seq;
ddbjvrl2.seq; ddbjvrl3.seq; /db/DDBJNEW.DATA/a/new_ddbjvrl.seq;
ddbjphg.seq; /db/DDBJNEW.DATA/a/new_ddbjphg.seq; ddbjuna.seq;
/db/DDBJNEW.DATA/a/new_ddbjuna.seq; ddbjgss1.seq; ddbjgss10.seq;
ddbjgss11.seq; ddbjgss12.seq; ddbjgss13.seq; ddbjgss14.seq;
ddbjgss15.seq; ddbjgss16.seq; ddbjgss17.seq; ddbjgss18.seq;
ddbjgss19.seq; ddbjgss2.seq; ddbjgss20.seq; ddbjgss21.seq;
ddbjgss22.seq; ddbjgss23.seq; ddbjgss24.seq; ddbjgss25.seq;
ddbjgss26.seq; ddbjgss27.seq; ddbjgss28.seq; ddbjgss29.seq;
ddbjgss3.seq; ddbjgss30.seq; ddbjgss31.seq; ddbjgss32.seq;
ddbjgss33.seq; ddbjgss34.seq; ddbjgss35.seq; ddbjgss36.seq;
ddbjgss37.seq; ddbjgss38.seq; ddbjgss39.seq; ddbjgss40.seq;
ddbjgss41.seq; ddbjgss42.seq; ddbjgss43.seq; ddbjgss44.seq;
ddbjgss45.seq; ddbjgss46.seq; ddbjgss47.seq; ddbjgss48.seq;
ddbjgss49.seq; ddbjgss50.seq; ddbjgss51.seq; ddbjgss52.seq;
ddbjgss53.seq; ddbjgss54.seq; ddbjgss55.seq; ddbjgss56.seq;
ddbjgss57.seq; ddbjgss58.seq; ddbjgss59.seq; ddbjgss60.seq;
ddbjgss61.seq; ddbjgss62.seq; ddbjgss63.seq; ddbjgss64.seq;
ddbjgss65.seq; ddbjgss66.seq; ddbjgss67.seq; ddbjgss68.seq;
ddbjgss69.seq; ddbjgss7.seq; ddbjgss70.seq; ddbjgss71.seq;
ddbjgss72.seq; ddbjgss73.seq; ddbjgss74.seq; ddbjgss75.seq;
ddbjgss76.seq; ddbjgss77.seq; ddbjgss78.seq; ddbjgss79.seq;
ddbjgss8.seq; ddbjgss80.seq; ddbjgss81.seq; ddbjgss82.seq;
ddbjgss83.seq; ddbjgss84.seq; ddbjgss85.seq; ddbjgss86.seq;
ddbjgss87.seq; ddbjgss88.seq; ddbjgss89.seq; ddbjgss9.seq;
ddbjgss90.seq; ddbjgss91.seq; ddbjgss92.seq; ddbjgss93.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss1.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss2.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss3.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss4.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss5.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss6.seq; ddbjhtg1.seq; ddbjhtg10.seq;
ddbjhtg11.seq; ddbjhtg12.seq; ddbjhtg13.seq; ddbjhtg14.seq;
ddbjhtg15.seq; ddbjhtg16.seq; ddbjhtg17.seq; ddbjhtg18.seq;
ddbjhtg19.seq; ddbjhtg2.seq; ddbjhtg20.seq; ddbjhtg21.seq;
ddbjhtg22.seq; ddbjhtg23.seq; ddbjhtg24.seq; ddbjhtg25.seq;
ddbjhtg26.seq; ddbjhtg27.seq; ddbjhtg28.seq; ddbjhtg29.seq;
ddbjhtg3.seq; ddbjhtg30.seq; ddbjhtg31.seq; ddbjhtg32.seq;
ddbjhtg33.seq; ddbjhtg34.seq; ddbjhtg35.seq; ddbjhtg36.seq;
ddbjhtg37.seq; ddbjhtg38.seq; ddbjhtg39.seq; ddbjhtg4.seq;
ddbjhtg40.seq; ddbjhtg41.seq; ddbjhtg42.seq; ddbjhtg43.seq;
ddbjhtg44.seq; ddbjhtg45.seq; ddbjhtg46.seq; ddbjhtg47.seq;
ddbjhtg48.seq; ddbjhtg49.seq; ddbjhtg5.seq; ddbjhtg50.seq;
ddbjhtg51.seq; ddbjhtg52.seq; ddbjhtg6.seq; ddbjhtg7.seq;
ddbjhtg8.seq; ddbjhtg9.seq; /db/DDBJNEW.DATA/a/new_ddbjhtg1.seq;
/db/DDBJNEW.DATA/a/new_ddbjhtg2.seq; ddbjpat1.seq; ddbjpat10.seq;
ddbjpat11.seq; ddbjpat12.seq; ddbjpat13.seq; ddbjpat14.seq;
ddbjpat2.seq; ddbjpat3.seq; ddbjpat4.seq; ddbjpat5.seq; ddbjpat6.seq;
ddbjpat7.seq; ddbjpat8.seq; ddbjpat9.seq;
/db/DDBJNEW.DATA/a/new_ddbjpat.seq; ddbjsts1.seq; ddbjsts2.seq;
ddbjsts3.seq; ddbjsts4.seq; /db/DDBJNEW.DATA/a/new_ddbjsts.seq;
ddbjsyn.seq; /db/DDBJNEW.DATA/a/new_ddbjsyn.seq; est_atha1.seq;
/db/DDBJNEW.DATA/a/new_est_atha1.seq; est_cele1.seq;
/db/DDBJNEW.DATA/a/new_est_cele1.seq; est_drer1.seq;
/db/DDBJNEW.DATA/a/new_est_drer1.seq; est_dmel1.seq;
/db/DDBJNEW.DATA/a/new_est_dmel1.seq; est_gmax1.seq;
/db/DDBJNEW.DATA/a/new_est_gmax1.seq; est_hum1.seq; est_hum2.seq;
est_hum3.seq; est_hum4.seq; /db/DDBJNEW.DATA/a/new_est_hum1.seq;
est_lesc1.seq; /db/DDBJNEW.DATA/a/new_est_lesc1.seq; est_mous1.seq;
est_mous2.seq; est_mous3.seq; /db/DDBJNEW.DATA/a/new_est_mous1.seq;
est_osat1.seq; /db/DDBJNEW.DATA/a/new_est_osat1.seq; est_rnor1.seq;
/db/DDBJNEW.DATA/a/new_est_rnor1.seq; est_xlae1.seq;
/db/DDBJNEW.DATA/a/new_est_xlae1.seq; est_zmay1.seq;
/db/DDBJNEW.DATA/a/new_est_zmay1.seq; est_rest1.seq; est_rest2.seq;
est_rest3.seq; est_rest4.seq; est_rest5.seq;
/db/DDBJNEW.DATA/a/new_est_rest1.seq
37,416,323 sequences; Z,708,242,551 total letters

Searching....................................................done

Score E
Sequences producing significant alignments: (bits) Value N

AB082543|AB082543.1 Dictyostelium discoideum forB gene for f... 56 2e-04 1
CL389340|CL389340.1 RPCI44_286H23.f RPCI-44 Sus scrofa genom... 42 3.1 1
AC145748|AC145748.4 Mus musculus BAC clone RP23-31L10 from c... 40 12 1
AC121856|AC121856.3 Mus musculus BAC clone RP24-97G6 from ch... 40 12 1
AC124914|AC124914.3 Homo sapiens chromosome 3 clone RP11-146... 40 12 1
AC079840|AC079840.8 Homo sapiens chromosome 3 clone RP11-316... 40 12 1

>AB082543|AB082543.1 Dictyostelium discoideum forB gene for formin
homology protein B, complete cds.
Length = 3726

Score = 56.0 bits (28), Expect = 2e-04
Identities = 28/28 (100%)
Strand = Plus / Plus


Query: 1 aaaaggaaaaatcacatggtaatattgg 28
||||||||||||||||||||||||||||
Sbjct: 206 aaaaggaaaaatcacatggtaatattgg 233

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 1,432,221
Number of Sequences: 37416323
Number of extensions: 1432221
Number of successful extensions: 343614
Number of sequences better than 10.0: 12
length of query: 201
length of database: Z,708,242,551
effective HSP length: 22
effective length of query: 179
effective length of database: Y,885,083,445
effective search space: 7497429936655
effective search space used: 7497429936655
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.

protein update 2009. 6.23
Homology vs Protein
Query= Contig-U06926-1 (Contig-U06926-1Q) /CSM_Contig/Contig-U06926-1Q.Seq.d
(201 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 87,165,494
Number of extensions: 377031
Number of successful extensions: 206
Number of sequences better than 10.0: 0
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 0
Length of query: 67
Length of database: 1,040,966,779
Length adjustment: 39
Effective length of query: 28
Effective length of database: 915,999,664
Effective search space: 25647990592
Effective search space used: 25647990592
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 26 (14.6 bits)

PSORT

psg: 0.49 gvh: 0.08 alm: 0.79 top: 0.53 tms: 0.00 mit: 0.43 mip: 0.00
nuc: 0.57 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

76.0 %: nuclear
12.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for Contig-U06926-1 is nuc

VS (DIR, S) 2
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0