| Contig-U06921-1 |
| Contig ID |
Contig-U06921-1 |
| Contig update |
2001. 8.30 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
565 |
| Chromosome number (1..6, M) |
6 |
| Chromosome length |
3595308 |
| Start point |
1335907 |
| End point |
1335342 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
1 |
| Number of EST |
1 |
| Link to clone list |
U06921 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11.11 |
| Homology vs DNA |
Query= Contig-U06921-1 (Contig-U06921-1Q) /CSM_Contig/Contig-U06921-1Q.Seq.d
(565 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AU268236) Dictyostelium discoideum vegetative cDNA clone:VS... 712 0.0 2
(AU268237) Dictyostelium discoideum vegetative cDNA clone:VS... 650 0.0 3
(CR382400) Plasmodium falciparum chromosome 6, complete sequ... 38 2e-06 13
(CR382401) Plasmodium falciparum chromosome 6, complete sequ... 36 2e-05 12
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 50 3e-05 17
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 34 8e-05 10
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1... 34 2e-04 13
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 36 6e-04 15
(AL844506) Plasmodium falciparum chromosome 7. 36 6e-04 15
(AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont... 34 7e-04 11
(CP000825) Prochlorococcus marinus str. MIT 9215, complete g... 40 0.001 21
(AF250284) Amsacta moorei entomopoxvirus, complete genome. 32 0.002 13
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3... 34 0.003 10
(AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8... 34 0.003 12
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI... 38 0.004 10
(AE017308) Mycoplasma mobile 163K complete genome. 34 0.004 10
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6... 38 0.004 8
(AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s... 40 0.006 12
(AL031745) Plasmodium falciparum DNA from MAL1P2. 38 0.006 11
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 30 0.007 16
(AL844507) Plasmodium falciparum chromosome 8. 34 0.008 14
(AC097055) Rattus norvegicus clone CH230-2F22, WORKING DRAFT... 42 0.009 8
(CR940353) Theileria annulata genomic DNA chromosome 4. 38 0.010 17
(CR382398) Plasmodium falciparum chromosome 6, complete sequ... 36 0.010 10
(AC005140) Plasmodium falciparum chromosome 12 clone 3D7, **... 38 0.013 10
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 32 0.017 20
(AM476781) Vitis vinifera contig VV78X125220.11, whole genom... 52 0.022 1
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 34 0.023 9
(AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5... 30 0.026 12
(CR932961) Medicago truncatula chromosome 5 clone mth2-62c4,... 40 0.027 7
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome. 34 0.030 13
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 38 0.038 10
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 32 0.047 13
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome. 36 0.053 19
(AC006279) Plasmodium falciparum chromosome 12 clone 3D7, **... 40 0.064 10
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3... 34 0.077 10
(CU672256) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 0.077 6
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7... 36 0.078 12
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 34 0.086 8
(AY139718) HIV-1 clone 513 from Greece nonfunctional envelop... 50 0.086 1
(BV722091) OMM5015 Rainbow trout microsatellite OMM5015 Onco... 50 0.086 1
(EJ429688) 1093015247663 Global-Ocean-Sampling_GS-28-01-01-1... 50 0.086 1
(CX258600) 1311806 NCCCWA 02RT Oncorhynchus mykiss cDNA clon... 50 0.086 1
(CO805120) OMM5015 NCCCWA 1RT Oncorhynchus mykiss cDNA clone... 50 0.086 1
(CA359407) 632347 NCCCWA 1RT Oncorhynchus mykiss cDNA clone ... 50 0.086 1
(CA349199) 499559 NCCCWA 1RT Oncorhynchus mykiss cDNA clone ... 50 0.086 1
(AC106744) Homo sapiens chromosome 5 clone RP11-124N3, compl... 32 0.090 8
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)... 34 0.095 13
(CL406137) ZMMBBb0408A09f ZMMBBb (HindIII) Zea mays subsp. m... 42 0.095 2
(EI514026) MUGQ_CH252P233B08T7_CN406_032 CHORI-252 Vervet Mo... 34 0.099 4
(CP000685) Flavobacterium johnsoniae UW101, complete genome. 38 0.11 17
(CP000814) Campylobacter jejuni subsp. jejuni 81116, complet... 34 0.12 17
(AL034557) Plasmodium falciparum MAL4P1. 32 0.12 14
(AC201718) Nomascus leucogenys leucogenys clone CH271-385M22... 44 0.13 4
(EA102637) Sequence 20 from patent US 7195870. 34 0.14 5
(AX344631) Sequence 56 from Patent WO0200927. 34 0.14 5
(AX323540) Sequence 28 from Patent WO0192565. 34 0.14 5
(AX277857) Sequence 20 from Patent WO0177375. 34 0.14 5
(AC179677) Strongylocentrotus purpuratus clone R3-1021O4, WO... 44 0.15 4
(AC110025) Homo sapiens chromosome 8, clone CTD-2294G15, com... 46 0.16 3
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s... 38 0.16 11
(AC140011) Homo sapiens chromosome 5 clone RP11-1269M7, WORK... 42 0.19 4
(AC145878) Pan troglodytes chromosome UNK clone RP43-20J8, *... 40 0.19 6
(CR769783) Zebrafish DNA sequence from clone DKEY-40A23 in l... 38 0.20 2
(CR762427) Zebrafish DNA sequence from clone DKEY-253I9 in l... 38 0.20 2
(AC166631) Rhinolophus ferrumequinum clone VMRC7-172M14, WOR... 36 0.20 2
(AL929044) Zebrafish DNA sequence from clone CH211-245D9 in ... 38 0.20 2
(CR382399) Plasmodium falciparum chromosome 6, complete sequ... 34 0.22 13
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5... 32 0.22 10
(AM476534) Vitis vinifera contig VV78X159052.13, whole genom... 40 0.22 2
(AL034559) Plasmodium falciparum MAL3P7. 34 0.22 10
(AC174297) Medicago truncatula clone mth2-73p24, complete se... 42 0.25 5
(CP000255) Staphylococcus aureus subsp. aureus USA300_FPR375... 36 0.25 16
(DX400928) GH__Sa0043F03.b1 Gossypium herbaceum WGS library ... 36 0.25 2
(CP000728) Clostridium botulinum F str. Langeland, complete ... 42 0.27 18
(CP000576) Prochlorococcus marinus str. MIT 9301, complete g... 34 0.27 16
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1... 34 0.28 9
(AE014848) Plasmodium falciparum 3D7 chromosome 12, section ... 32 0.28 9
(AE014851) Plasmodium falciparum 3D7 chromosome 12, section ... 38 0.29 7
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 48 0.30 19
(CR925677) Ehrlichia ruminantium str. Gardel, complete genome. 32 0.32 17
(AC104380) Homo sapiens chromosome 8, clone CTD-2342C1, comp... 42 0.32 7
(AC125158) Mus musculus BAC clone RP24-391P1 from chromosome... 48 0.34 1
(AM478061) Vitis vinifera, whole genome shotgun sequence, co... 48 0.34 1
(AC066691) Arabidopsis thaliana chromosome 1 BAC T6J19 genom... 48 0.34 1
(AC007267) Arabidopsis thaliana chromosome 2 clone F27O10 ma... 48 0.34 1
(AC126335) Homo sapiens chromosome 15, clone RP11-854K16, co... 48 0.34 1
(AC106029) Homo sapiens chromosome 15, clone CTD-2538I11, co... 48 0.34 1
(AC087386) Homo sapiens chromosome 15, clone RP11-173D3, com... 48 0.34 1
(AC145318) Homo sapiens chromosome 16 clone RP11-1419K13, WO... 48 0.34 1
(AC142540) Homo sapiens chromosome 16 clone RP11-697E17, WOR... 48 0.34 1
(AC142539) Homo sapiens chromosome 16 clone RP11-674M19, WOR... 48 0.34 1
(AC141619) Homo sapiens chromosome 16 clone RP11-95I9, WORKI... 48 0.34 1
(AC141592) Homo sapiens chromosome 16 clone RP11-107J10, WOR... 48 0.34 1
(AC141316) Homo sapiens chromosome 16 clone RP11-959D23, WOR... 48 0.34 1
(AC141301) Homo sapiens chromosome 16 clone RP11-717D19, WOR... 48 0.34 1
(AC141298) Homo sapiens chromosome 16 clone RP11-67L8, WORKI... 48 0.34 1
(AC140868) Homo sapiens chromosome 16 clone RP11-112K3, WORK... 48 0.34 1
(AC084192) Homo sapiens chromosome 15 clone RP11-231O17 map ... 48 0.34 1
(AC207415) Zea mays chromosome 3 clone CH201-187K21; ZMMBBc0... 48 0.34 1
>(AU268236) Dictyostelium discoideum vegetative cDNA clone:VSI155,
5' end single read.
Length = 556
Score = 712 bits (359), Expect(2) = 0.0
Identities = 359/359 (100%)
Strand = Plus / Plus
Query: 1 caaataaatataaatcaattgcaattatttctgatgatattagatcaatgacaaatactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caaataaatataaatcaattgcaattatttctgatgatattagatcaatgacaaatactt 60
Query: 61 ttagttcaatattaaatggtgaaactagagaaaagaataatataacatatttttgtttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttagttcaatattaaatggtgaaactagagaaaagaataatataacatatttttgtttta 120
Query: 121 caagtacaccaaaaccaaaagctttagaattatttggtgatacaagaggtaatttaagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caagtacaccaaaaccaaaagctttagaattatttggtgatacaagaggtaatttaagag 180
Query: 181 taccatttcatacttattcaatagagaaagcattacaagataaaattgttatgaattgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taccatttcatacttattcaatagagaaagcattacaagataaaattgttatgaattgta 240
Query: 241 ttgatcattatacaactgtttcaattttaaccaaagtttcaaatgataaaacaagtgata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttgatcattatacaactgtttcaattttaaccaaagtttcaaatgataaaacaagtgata 300
Query: 301 ccttttttaatgatgaaaataaatcatcttatcatattttaaaacatccaaataatgat 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccttttttaatgatgaaaataaatcatcttatcatattttaaaacatccaaataatgat 359
Score = 377 bits (190), Expect(2) = 0.0
Identities = 190/190 (100%)
Strand = Plus / Plus
Query: 367 taattcaagaaaagtcatcatatattataaaacattttttaaaattaagagaacaaatta 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 taattcaagaaaagtcatcatatattataaaacattttttaaaattaagagaacaaatta 426
Query: 427 ataatgatgaatttaattgtagagcaatggttagttacaaatagtagagaacaaatttta 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ataatgatgaatttaattgtagagcaatggttagttacaaatagtagagaacaaatttta 486
Query: 487 ttatataaacaaacattggaatcattggtgaaatcattaccaaagaatcaaaaatttgat 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ttatataaacaaacattggaatcattggtgaaatcattaccaaagaatcaaaaatttgat 546
Query: 547 attatagcat 556
||||||||||
Sbjct: 547 attatagcat 556
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 920,301,805
Number of extensions: 63324692
Number of successful extensions: 6040196
Number of sequences better than 10.0: 712
Length of query: 565
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 542
Effective length of database: 93,106,754,628
Effective search space: 50463861008376
Effective search space used: 50463861008376
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 6.23 |
| Homology vs Protein |
Query= Contig-U06921-1 (Contig-U06921-1Q) /CSM_Contig/Contig-U06921-1Q.Seq.d
(565 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ493919_9(DQ493919|pid:none) Campylobacter jejuni subsp. jejuni... 73 6e-12
CP000447_2583(CP000447|pid:none) Shewanella frigidimarina NCIMB ... 66 5e-10
CP000058_100(CP000058|pid:none) Pseudomonas syringae pv. phaseol... 66 5e-10
CR954246_2033(CR954246|pid:none) Pseudoalteromonas haloplanktis ... 66 5e-10
AE008384_2976(AE008384|pid:none) Methanosarcina mazei strain Goe... 66 7e-10
CP000434_153(CP000434|pid:none) Rhodococcus jostii RHA1 plasmid ... 65 1e-09
CU466930_211(CU466930|pid:none) Candidatus Cloacamonas acidamino... 64 2e-09
EU272902_13(EU272902|pid:none) Vibrio cholerae strain Amazonia i... 64 3e-09
AE003852_1736(AE003852|pid:none) Vibrio cholerae O1 biovar eltor... 64 3e-09
CP000923_1188(CP000923|pid:none) Thermoanaerobacter sp. X514, co... 64 3e-09
AP004312_1(AP004312|pid:none) Synechocystis sp. PCC 6803 plasmid... 63 5e-09
AY714851_15(AY714851|pid:none) Uncultured archaeon GZfos29E12 cl... 59 1e-08
A82516(A82516) type I restriction-modification system endonuclea... 62 1e-08
CP001280_3478(CP001280|pid:none) Methylocella silvestris BL2, co... 61 2e-08
CP000099_988(CP000099|pid:none) Methanosarcina barkeri str. Fusa... 61 2e-08
CP000514_410(CP000514|pid:none) Marinobacter aquaeolei VT8, comp... 61 2e-08
CP000671_484(CP000671|pid:none) Haemophilus influenzae PittEE, c... 61 2e-08
AE004091_2733(AE004091|pid:none) Pseudomonas aeruginosa PAO1, co... 61 2e-08
CP001154_1514(CP001154|pid:none) Laribacter hongkongensis HLHK9,... 60 4e-08
CP000057_169(CP000057|pid:none) Haemophilus influenzae 86-028NP,... 60 5e-08
AE005673_620(AE005673|pid:none) Caulobacter crescentus CB15, com... 60 5e-08
CP000514_228(CP000514|pid:none) Marinobacter aquaeolei VT8, comp... 60 5e-08
CP001034_785(CP001034|pid:none) Natranaerobius thermophilus JW/N... 60 5e-08
CP000609_634(CP000609|pid:none) Methanococcus maripaludis C5, co... 59 1e-07
AP008231_483(AP008231|pid:none) Synechococcus elongatus PCC 6301... 59 1e-07
AE009442_1985(AE009442|pid:none) Xylella fastidiosa Temecula1, c... 59 1e-07
CP000249_190(CP000249|pid:none) Frankia sp. CcI3, complete genome. 58 1e-07
CP000082_424(CP000082|pid:none) Psychrobacter arcticus 273-4, co... 58 2e-07
CP000577_1843(CP000577|pid:none) Rhodobacter sphaeroides ATCC 17... 57 3e-07
CP001616_2238(CP001616|pid:none) Tolumonas auensis DSM 9187, com... 57 3e-07
CP000304_637(CP000304|pid:none) Pseudomonas stutzeri A1501, comp... 57 3e-07
AM420293_851(AM420293|pid:none) Saccharopolyspora erythraea NRRL... 57 4e-07
CU468135_3326(CU468135|pid:none) Erwinia tasmaniensis strain ET1... 57 4e-07
CP001600_2410(CP001600|pid:none) Edwardsiella ictaluri 93-146, c... 56 6e-07
CP000544_1132(CP000544|pid:none) Halorhodospira halophila SL1, c... 56 6e-07
AE016827_2171(AE016827|pid:none) Mannheimia succiniciproducens M... 56 6e-07
CP000744_77(CP000744|pid:none) Pseudomonas aeruginosa PA7, compl... 56 7e-07
AE017340_641(AE017340|pid:none) Idiomarina loihiensis L2TR, comp... 55 1e-06
CP000503_1087(CP000503|pid:none) Shewanella sp. W3-18-1, complet... 55 1e-06
CP000721_3099(CP000721|pid:none) Clostridium beijerinckii NCIMB ... 55 1e-06
CP001600_492(CP001600|pid:none) Edwardsiella ictaluri 93-146, co... 54 2e-06
CP000713_1310(CP000713|pid:none) Psychrobacter sp. PRwf-1, compl... 54 3e-06
CP000139_3306(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,... 54 3e-06
CP000453_1774(CP000453|pid:none) Alkalilimnicola ehrlichii MLHE-... 54 3e-06
CP000383_2886(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 54 3e-06
FM204884_429(FM204884|pid:none) Streptococcus equi subsp. zooepi... 54 4e-06
CP000896_1224(CP000896|pid:none) Acholeplasma laidlawii PG-8A, c... 54 4e-06
CP000675_614(CP000675|pid:none) Legionella pneumophila str. Corb... 53 5e-06
M63891_2(M63891|pid:none) Bacillus stearothermophilus plasmid pT... 53 6e-06
CP000685_2680(CP000685|pid:none) Flavobacterium johnsoniae UW101... 52 8e-06
AM920689_3314(AM920689|pid:none) Xanthomonas campestris pv. camp... 52 1e-05
CR378665_242(CR378665|pid:none) Photobacterium profundum SS9; se... 52 1e-05
AM039952_1194(AM039952|pid:none) Xanthomonas campestris pv. vesi... 52 1e-05
CP000050_3130(CP000050|pid:none) Xanthomonas campestris pv. camp... 52 1e-05
CP001618_1487(CP001618|pid:none) Beutenbergia cavernae DSM 12333... 51 2e-05
CP000512_3295(CP000512|pid:none) Acidovorax citrulli AAC00-1, co... 51 2e-05
BA000035_50(BA000035|pid:none) Corynebacterium efficiens YS-314 ... 50 4e-05
CP000127_137(CP000127|pid:none) Nitrosococcus oceani ATCC 19707,... 49 9e-05
CP000647_934(CP000647|pid:none) Klebsiella pneumoniae subsp. pne... 49 1e-04
AM942444_1076(AM942444|pid:none) Corynebacterium urealyticum DSM... 48 2e-04
CR931997_899(CR931997|pid:none) Corynebacterium jeikeium K411 co... 48 2e-04
CP000112_2864(CP000112|pid:none) Desulfovibrio desulfuricans G20... 47 3e-04
CP000754_70(CP000754|pid:none) Shewanella baltica OS185 plasmid ... 47 5e-04
AY829451_1(AY829451|pid:none) Vibrio cholerae strain Amazonia 35... 45 0.001
AL844505_191(AL844505|pid:none) Plasmodium falciparum 3D7 chromo... 42 0.011
CP000362_3770(CP000362|pid:none) Roseobacter denitrificans OCh 1... 41 0.025
AE008384_2292(AE008384|pid:none) Methanosarcina mazei strain Goe... 36 0.80
AE009951_824(AE009951|pid:none) Fusobacterium nucleatum subsp. n... 36 0.80
CP001072_436(CP001072|pid:none) Helicobacter pylori Shi470, comp... 35 1.8
(Q9ZEC9) RecName: Full=Uncharacterized protein RP014; &AJ235270... 35 1.8
AL844505_223(AL844505|pid:none) Plasmodium falciparum 3D7 chromo... 35 1.8
CP000716_389(CP000716|pid:none) Thermosipho melanesiensis BI429,... 33 3.9
EU583460_1(EU583460|pid:none) Populus trichocarpa cytokinin rece... 33 3.9
AE016816_416(AE016816|pid:none) Ashbya gossypii (= Eremothecium ... 33 3.9
AY812358_1(AY812358|pid:none) Schistosoma japonicum SJCHGC02998 ... 33 3.9
AE017197_12(AE017197|pid:none) Rickettsia typhi str. Wilmington ... 33 5.2
Z98547_1(Z98547|pid:none) Plasmodium falciparum MAL3P3, complete... 33 6.7
EF421416_1(EF421416|pid:none) Salmo salar CD3gammadelta-A mRNA, ... 33 6.7
CP001186_2727(CP001186|pid:none) Bacillus cereus G9842, complete... 33 6.7
AE014186_446(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 33 6.7
CP001083_1035(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 33 6.7
AL034558_44(AL034558|pid:none) Plasmodium falciparum MAL3P2, com... 33 6.7
CP000847_56(CP000847|pid:none) Rickettsia akari str. Hartford, c... 33 6.7
Z93377_7(Z93377|pid:none) Caenorhabditis elegans Cosmid F13A7, c... 33 6.7
CP000962_276(CP000962|pid:none) Clostridium botulinum A3 str. Lo... 32 8.8
DQ834692_1(DQ834692|pid:none) Salmo salar unknown mRNA. 32 8.8
AE014186_441(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 32 8.8
CP000962_1117(CP000962|pid:none) Clostridium botulinum A3 str. L... 32 8.8
AE014298_2776(AE014298|pid:none) Drosophila melanogaster chromos... 32 8.8
CP000726_2348(CP000726|pid:none) Clostridium botulinum A str. AT... 32 8.9
(B0JSW8) RecName: Full=Photosystem II reaction center protein K;... 32 8.9
AM778932_23(AM778932|pid:none) Microcystis aeruginosa PCC 7806 g... 32 8.9
DQ400677_2(DQ400677|pid:none) Vanhornia eucnemidarum M12-2 mitoc... 32 8.9
>DQ493919_9(DQ493919|pid:none) Campylobacter jejuni subsp. jejuni
81-176 hypothetical protein (cju15), probable
heat-inducible transcription repressor (cj0757),
GrpE-like protein (cj0758), chaperone protein DnaK
(cj0759), putative type I restriction-modification
system HsdM subunit (cju16), putative type I
restriction-modification system HsdS subunit (cju17),
hypothetical protein (cju18), hypothetical protein
(cju19), putative type I restriction-modification system
HsdR subunit (cju20), and hypothetical protein (cj0760)
genes, complete cds.
Length = 971
Score = 72.8 bits (177), Expect = 6e-12
Identities = 39/130 (30%), Positives = 78/130 (60%), Gaps = 4/130 (3%)
Frame = +3
Query: 33 DDIRSMTNTFSSILNGETREKNNITYFCFTSTPKPKALELFG---DTRGNLR-VPFHTYS 200
D+ +++ + I+ + + ++N +YF FT+TPKPK LE+FG D G R +PFH YS
Sbjct: 430 DESQNLDDEILEIIKNK-KLQSNASYFAFTATPKPKTLEMFGMPCDVNGEQRFIPFHLYS 488
Query: 201 IEKALQDKIVMNCIDHYTTVSILTKVSNDKTSDTFFNDENKSSYHILKHPNNDKKIIQEK 380
+++A+++ +++ + YTT K+ + T+D D+ +++ + + N+ K I++K
Sbjct: 489 MKQAIEEGFILDVLKGYTTYKSYYKIIS-CTNDNPKYDKKRANTKLKAYVQNNIKTIEQK 547
Query: 381 SSYIIKHFLK 410
S + +HF +
Sbjct: 548 SQIMCEHFFQ 557
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 754,105,817
Number of extensions: 14127032
Number of successful extensions: 38920
Number of sequences better than 10.0: 93
Number of HSP's gapped: 38799
Number of HSP's successfully gapped: 94
Length of query: 188
Length of database: 1,040,966,779
Length adjustment: 121
Effective length of query: 67
Effective length of database: 653,248,294
Effective search space: 43767635698
Effective search space used: 43767635698
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
|
| PSORT |
|
| VS (DIR, S) |
1 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |