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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01427-1
Contig ID Contig-U01427-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U01427-1 (Contig-U01427-1Q) /CSM_Contig/Contig-U01427-1Q.Seq.d
GTTTAACTCTAAGAGAATTATATTGATGGCTTTCTCCGAGGGTAAGGCAT
CGATAGTTCAGAAGACAACCGAGGGTGAGATCACTCCTGCTATACCATCA
ACCATTTTTCAACGTCATCAAAAGTGTCAGTTGATAATTGATGAGGCTGC
AGCTGTAGAGATTACACGTTGTAAACAACCATGGGTTATTCATTCCACTG
GAACAACTCTTACAATTAAGTGGTCACCATTGTTGGCTAGAAAAGCTGTG
ATTTGGTTATCATTGAAATTG----------TTAATCCAATTGGTAGATT
AACACTTTTATCATTGGTACCAAATTCAAAAACAAATTGGACAAGTTTTC
AATTGAAATCTTTATCATTAGGTTATTGTAGATGTATAAATGCTTTTGAT
TTATCCGCTGTTTTAGCTGGACTTTATAAATCTTTAGAATATTTATCAAT
ACCTGGTTGTTTTCAAATTGATAAATCATTTTTAGATCAAATTTTATTAT
CACCTTCAATAATTTTATCAAATATAGCTTCTGCAACTACTTCTTTATCA
AATAATAATAATAGTTTGGATAATAATTCAAATAATCTTTTAAATGGTAT
TTCAAATCAATCATTACCAACAACTAATTCAATAATAACTACAAACACAA
CTACAACCACAACAACAACTACTACTTCAAATTCAAATAAAAGAAAGAGT
GTTGATATTGTTGCATTAAAAACTTTAGATATTTCTTATTGTTCACAATT
TTTATCAAGTTCAACTTTAACAAAATTAAATCAGAATTGTAAACAAATGA
AAATTTTACGTTATAATACAATCGGTTTTAATCATAATCATATTTATTCT
TAAAAAA
Gap gap included
Contig length 847
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 4162100
End point 4161407
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 3
Link to clone list U01427
List of clone(s) 

est1=SLJ352F,1,272
est2=SSM786Z,273,845
est3=SLJ352Z,596,849
Translated Amino Acid sequence 
FNSKRIILMAFSEGKASIVQKTTEGEITPAIPSTIFQRHQKCQLIIDEAAAVEITRCKQP
WVIHSTGTTLTIKWSPLLARKAVIWLSLKL---

---NPIGRLTLLSLVPNSKTNWTSFQLKSLSLGYCRCINAFDLSAVLAGLYKSLEYLSIP
GCFQIDKSFLDQILLSPSIILSNIASATTSLSNNNNSLDNNSNNLLNGISNQSLPTTNSI
ITTNTTTTTTTTTTSNSNKRKSVDIVALKTLDISYCSQFLSSSTLTKLNQNCKQMKILRY
NTIGFNHNHIYS*k
Translated Amino Acid sequence (All Frames) 
Frame A:
v*l*enyidgflrg*gidssednrg*dhscytinhfstsskvsvdn**gcscrdytl*tt
mgysfhwnnsyn*vvtivg*kscdlviiei---

---liqlvd*hfyhwyqiqkqigqvfn*nlyh*vivdv*mlliyplf*ldfinl*niyqy
lvvfklinhf*ikfyyhlq*fyqi*llqlllyqiiiivwiiiqiif*mvfqinhyqqliq
**lqtqlqpqqqlllqiqikervlillh*kl*iflivhnfyqvql*qn*irivnk*kfyv
iiqsvliiiifilkk

Frame B:
FNSKRIILMAFSEGKASIVQKTTEGEITPAIPSTIFQRHQKCQLIIDEAAAVEITRCKQP
WVIHSTGTTLTIKWSPLLARKAVIWLSLKL---

---*snw*intfiigtkfknkldkfsieifiirll*mykcf*fircfswtl*ifrifint
wlfsn**iifrsnfiitfnnfikysfcnyffik****fg**fk*sfkwyfksiitnn*fn
nnykhnynhnnnyyfkfk*kkec*ycciknfryfllftifikfnfnkiksel*tnenftl
*ynrf*s*sylflk

Frame C:
ltlrely*wlsprvrhr*frrqprvrslllyhqpffnviksvs**lmrlql*rlhvvnnh
glfipleqllqlsghhcwlekl*fgyh*n---

---NPIGRLTLLSLVPNSKTNWTSFQLKSLSLGYCRCINAFDLSAVLAGLYKSLEYLSIP
GCFQIDKSFLDQILLSPSIILSNIASATTSLSNNNNSLDNNSNNLLNGISNQSLPTTNSI
ITTNTTTTTTTTTTSNSNKRKSVDIVALKTLDISYCSQFLSSSTLTKLNQNCKQMKILRY
NTIGFNHNHIYS*k
own update 2004. 6. 7
Homology vs CSM-cDNA 
Query= Contig-U01427-1 (Contig-U01427-1Q)
/CSM_Contig/Contig-U01427-1Q.Seq.d
         (857 letters)

Database: CSM
           8361 sequences; 7,895,291 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01427-1 (Contig-U01427-1Q) /CSM_Contig/Conti...  1158  0.0
Contig-U12558-1 (Contig-U12558-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U12526-1 (Contig-U12526-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U12089-1 (Contig-U12089-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U11736-1 (Contig-U11736-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U11505-1 (Contig-U11505-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U10782-1 (Contig-U10782-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U10772-1 (Contig-U10772-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U13992-1 (Contig-U13992-1Q) /CSM_Contig/Conti...    38  0.021
Contig-U13134-1 (Contig-U13134-1Q) /CSM_Contig/Conti...    38  0.021

>Contig-U01427-1 (Contig-U01427-1Q) /CSM_Contig/Contig-U01427-1Q.Seq.d
          Length = 857

 Score = 1158 bits (584), Expect = 0.0
 Identities = 614/614 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtttaactctaagagaattatattgatggctttctccgagggtaaggcatcgatagttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtttaactctaagagaattatattgatggctttctccgagggtaaggcatcgatagttca 60

                                                                       
Query: 61  gaagacaaccgagggtgagatcactcctgctataccatcaaccatttttcaacgtcatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gaagacaaccgagggtgagatcactcctgctataccatcaaccatttttcaacgtcatca 120

                                                                       
Query: 121 aaagtgtcagttgataattgatgaggctgcagctgtagagattacacgttgtaaacaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaagtgtcagttgataattgatgaggctgcagctgtagagattacacgttgtaaacaacc 180

                                                                       
Query: 181 atgggttattcattccactggaacaactcttacaattaagtggtcaccattgttggctag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atgggttattcattccactggaacaactcttacaattaagtggtcaccattgttggctag 240

                                                                       
Query: 241 aaaagctgtgatttggttatcattgaaattgnnnnnnnnnnttaatccaattggtagatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaaagctgtgatttggttatcattgaaattgnnnnnnnnnnttaatccaattggtagatt 300

                                                                       
Query: 301 aacacttttatcattggtaccaaattcaaaaacaaattggacaagttttcaattgaaatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aacacttttatcattggtaccaaattcaaaaacaaattggacaagttttcaattgaaatc 360

                                                                       
Query: 361 tttatcattaggttattgtagatgtataaatgcttttgatttatccgctgttttagctgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tttatcattaggttattgtagatgtataaatgcttttgatttatccgctgttttagctgg 420

                                                                       
Query: 421 actttataaatctttagaatatttatcaatacctggttgttttcaaattgataaatcatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 actttataaatctttagaatatttatcaatacctggttgttttcaaattgataaatcatt 480

                                                                       
Query: 481 tttagatcaaattttattatcaccttcaataattttatcaaatatagcttctgcaactac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tttagatcaaattttattatcaccttcaataattttatcaaatatagcttctgcaactac 540

                                                                       
Query: 541 ttctttatcaaataataataatagtttggataataattcaaataatcttttaaatggtat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttctttatcaaataataataatagtttggataataattcaaataatcttttaaatggtat 600

                         
Query: 601 ttcaaatcaatcat 614
           ||||||||||||||
Sbjct: 601 ttcaaatcaatcat 614


 Score =  371 bits (187), Expect = e-102
 Identities = 187/187 (100%)
 Strand = Plus / Plus

                                                                       
Query: 671 actacttcaaattcaaataaaagaaagagtgttgatattgttgcattaaaaactttagat 730
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 actacttcaaattcaaataaaagaaagagtgttgatattgttgcattaaaaactttagat 730

                                                                       
Query: 731 atttcttattgttcacaatttttatcaagttcaactttaacaaaattaaatcagaattgt 790
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 atttcttattgttcacaatttttatcaagttcaactttaacaaaattaaatcagaattgt 790

                                                                       
Query: 791 aaacaaatgaaaattttacgttataatacaatcggttttaatcataatcatatttattct 850
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 aaacaaatgaaaattttacgttataatacaatcggttttaatcataatcatatttattct 850

                  
Query: 851 taaaaaa 857
           |||||||
Sbjct: 851 taaaaaa 857


>Contig-U12558-1 (Contig-U12558-1Q) /CSM_Contig/Contig-U12558-1Q.Seq.d
          Length = 1026

 Score = 40.1 bits (20), Expect = 0.005
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 474 aatcatttttagatcaaattttattatcaccttcaa 509
           |||||||||  |||||||||||||||| | ||||||
Sbjct: 573 aatcattttatgatcaaattttattattatcttcaa 608


>Contig-U12526-1 (Contig-U12526-1Q) /CSM_Contig/Contig-U12526-1Q.Seq.d
          Length = 4385

 Score = 40.1 bits (20), Expect = 0.005
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 544 tttatcaaataataataata 563
           ||||||||||||||||||||
Sbjct: 126 tttatcaaataataataata 145


  Database: CSM
    Posted date:  Jun 7, 2004  8:33 AM
  Number of letters in database: 7,895,291
  Number of sequences in database:  8361
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 36,772
Number of Sequences: 8361
Number of extensions: 36772
Number of successful extensions: 13289
Number of sequences better than 10.0: 775
length of query: 857
length of database: 7,895,291
effective HSP length: 16
effective length of query: 841
effective length of database: 7,761,515
effective search space: 6527434115
effective search space used: 6527434115
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 4.27
Homology vs DNA 
Query= Contig-U01427-1 (Contig-U01427-1Q) /CSM_Contig/Contig-U01427-1Q.Seq.d
         (857 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C93394) Dictyostelium discoideum slug cDNA, clone SSM786.        527   0.0    2
(AU060348) Dictyostelium discoideum slug cDNA, clone SLJ352.      535   e-148  1
(AU053664) Dictyostelium discoideum slug cDNA, clone SLJ352.      351   3e-92  1
(AC204201) Ornithorhynchus anatinus clone OA_Bb-567M2, WORKI...    52   0.036  1
(AC192694) Ornithorhynchus anatinus clone OA_Bb-186I15, WORK...    52   0.036  1
(EJ107909) 1092343144035 Global-Ocean-Sampling_GS-27-01-01-1...    50   0.14   1
(AM438852) Vitis vinifera contig VV78X173150.8, whole genome...    36   0.61   3
(GC698721) Sequence 13966 from patent US 6812339.                  38   0.99   3
(AC114261) Dictyostelium discoideum chromosome 2 map 126059-...    36   1.0    5
(AM422018) Candidatus Phytoplasma australiense complete genome.    36   1.5    13
(DU738482) APKI4723.g2 HF70_10-07-02 uncultured marine micro...    36   1.5    2
(AL163491) Arabidopsis thaliana DNA chromosome 5, BAC clone ...    46   2.2    1
(AC129651) Rattus norvegicus clone CH230-9A14, *** SEQUENCIN...    46   2.2    1
(AC128000) Rattus norvegicus clone CH230-402K9, *** SEQUENCI...    46   2.2    1
(AC109868) Rattus norvegicus clone CH230-293P6, *** SEQUENCI...    46   2.2    1
(AC220489) Bos taurus clone CH240-356H20, WORKING DRAFT SEQU...    46   2.2    1
(AC212518) Equus caballus clone CH241-292N24, WORKING DRAFT ...    46   2.2    1
(AC195197) Zea mays chromosome 8 clone ZMMBBb-124E2; ZMMBBb0...    46   2.2    1
(AC186514) Zea mays chromosome 8 clone CH201-5G4; ZMMBBc0005...    46   2.2    1
(AC167417) Bos taurus clone CH240-193N20, *** SEQUENCING IN ...    46   2.2    1
(ER883573) MUGQ_CH252P277F24T7_CN586_092 CHORI-252 Vervet Mo...    46   2.2    1
(AL953069) Arabidopsis thaliana T-DNA flanking sequence GK-3...    46   2.2    1
(AL953067) Arabidopsis thaliana T-DNA flanking sequence GK-3...    46   2.2    1
(AL953066) Arabidopsis thaliana T-DNA flanking sequence GK-3...    46   2.2    1
(ED766138) GM_WBb0139B11.r GM_WBb Glycine max genomic clone ...    46   2.2    1
(CZ859900) OC__Ba0252K10.f OC__Ba Oryza coarctata genomic cl...    46   2.2    1
(CL416025) ZMMBBb0429D15r ZMMBBb (HindIII) Zea mays subsp. m...    46   2.2    1
(CG044172) PUIGB43TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    46   2.2    1
(CC900272) ZMMBBb0233M05.f ZMMBBb Zea mays subsp. mays genom...    46   2.2    1
(CC753480) ZMMBBb0135H08.r ZMMBBb Zea mays subsp. mays genom...    46   2.2    1
(CC201572) CH261-61I17_Sp6.1 CH261 Gallus gallus genomic clo...    46   2.2    1
(FG654982) G1142P314RA18.T0 Anolis carolinensis pooled norma...    46   2.2    1
(FG654886) G1142P314FA18.T0 Anolis carolinensis pooled norma...    46   2.2    1
(CP001251) Dictyoglomus turgidum DSM 6724, complete genome.        46   2.2    1
(AY653733) Acanthamoeba polyphaga mimivirus, complete genome.      36   2.3    13
(ER575621) 1093015810391 Global-Ocean-Sampling_GS-36-01-01-2...    32   3.0    3
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    32   3.1    9
(AC116922) Dictyostelium discoideum chromosome 2 map 6061442...    38   3.4    3
(CP001321) Haemophilus parasuis SH0165, complete genome.           34   3.5    2
(AC181717) Strongylocentrotus purpuratus clone R3-1039H09, W...    42   4.0    4
(BX248583) Blochmannia floridanus complete genome.                 34   4.3    13
(AP010057) Lotus japonicus genomic DNA, chromosome 2, clone:...    32   4.3    2
(CU459031) Medicago truncatula chromosome 5 clone mth4-9h19,...    38   5.2    3
(AE017308) Mycoplasma mobile 163K complete genome.                 32   5.2    16
(EG550804) MM03N10_RP Sugar Beet germination cDNA library Be...    32   5.3    3
(AG430755) Mus musculus molossinus DNA, clone:MSMg01-305P05....    32   5.5    2
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s...    32   6.7    8
(EK566567) 1095521044206 Global-Ocean-Sampling_GS-32-01-01-1...    40   6.9    2
(AC155513) Zea mays strain B73 clone ZMMBBc0055M11, *** SEQU...    34   7.6    5
(AC197045) Zea mays chromosome 3 clone CH201-55M11; ZMMBBc00...    34   7.8    5
(AY245100) Metarhizium anisopliae trifunctional tryptophan b...    44   8.7    1
(AM989986) Zygosaccharomyces rouxii strain CBS 732 Contig7.        44   8.7    1
(AM989977) Zygosaccharomyces rouxii strain ATCC 42981, POP2 ...    44   8.7    1
(AM989976) Zygosaccharomyces rouxii strain ATCC 42981, POP2 ...    44   8.7    1
(AC208938) Populus trichocarpa clone JGIACSB1085-H10, comple...    44   8.7    1
(AF040646) Caenorhabditis elegans fosmid H17B01, complete se...    44   8.7    1
(AC006149) Homo sapiens PAC clone RP5-1078A23 from 7, comple...    44   8.7    1
(AC147198) Sus scrofa clone RP44-473F3, WORKING DRAFT SEQUEN...    44   8.7    1
(AC145026) Sus scrofa clone RP44-9J12, WORKING DRAFT SEQUENC...    44   8.7    1
(AC112431) Rattus norvegicus clone CH230-112K1, WORKING DRAF...    44   8.7    1
(AC107187) Rattus norvegicus clone CH230-82E16, *** SEQUENCI...    44   8.7    1
(CU466950) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.7    1
(AC211372) Zea mays chromosome 9 clone ZMMBBb-70C16; ZMMBBb0...    44   8.7    1
(AC182547) Dasypus novemcinctus clone VMRC5-387K24, WORKING ...    44   8.7    1
(AC179114) Strongylocentrotus purpuratus clone R3-4011G24, W...    44   8.7    1
(AC168488) Strongylocentrotus purpuratus clone R3-3117J19, W...    44   8.7    1
(AC006799) Caenorhabditis elegans clone Y51H7, *** SEQUENCIN...    44   8.7    1
(CZ868296) OC__Ba0265I06.f OC__Ba Oryza coarctata genomic cl...    44   8.7    1
(CW855436) she2h19-53.g_047.ab1 Whole-genome shotgun library...    44   8.7    1
(EL926280) NY4ThAmp1_1_C05.g1_A039 NY4 theronts: amplified l...    44   8.7    1
(AV360855) Mus musculus adult male eyeball cDNA, RIKEN full-...    44   8.7    1
(DW254891) UI-S-GB1-aak-d-04-0-UI.s1 UI-S-GB1 Euprymna scolo...    44   8.7    1
(DR453212) CM010G10 Cotton Lambda Zap Express Library Gossyp...    44   8.7    1
(DR050853) RTBOR1_26_C07.b1_A029 Roots plus added boron Pinu...    44   8.7    1
(CT985180) partial cDNA sequence from a Lambda ZAP II normal...    44   8.7    1
(CT982703) partial cDNA sequence from a Lambda ZAP II normal...    44   8.7    1
(FE169203) LV_LO_RA049G23f Litopenaeus vannamei lymphoid org...    44   8.7    1
(FE169202) LV_LO_RA049E23r Litopenaeus vannamei lymphoid org...    44   8.7    1
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome.    44   8.7    1
(BX548174) Prochlorococcus marinus MED4 complete genome.           44   8.7    1
(EJ755422) 1092963074589 Global-Ocean-Sampling_GS-30-02-01-1...    30   9.1    3
(FH426405) CHO_OF4905xp04f1.ab1 CHO_OF4 Nicotiana tabacum ge...    30   9.2    3

>(C93394) Dictyostelium discoideum slug cDNA, clone SSM786.
          Length = 573

 Score =  527 bits (266), Expect(2) = 0.0
 Identities = 266/266 (100%)
 Strand = Plus / Plus


Query: 282 ttaatccaattggtagattaacacttttatcattggtaccaaattcaaaaacaaattgga 341
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ttaatccaattggtagattaacacttttatcattggtaccaaattcaaaaacaaattgga 60


Query: 342 caagttttcaattgaaatctttatcattaggttattgtagatgtataaatgcttttgatt 401
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  caagttttcaattgaaatctttatcattaggttattgtagatgtataaatgcttttgatt 120


Query: 402 tatccgctgttttagctggactttataaatctttagaatatttatcaatacctggttgtt 461
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tatccgctgttttagctggactttataaatctttagaatatttatcaatacctggttgtt 180


Query: 462 ttcaaattgataaatcatttttagatcaaattttattatcaccttcaataattttatcaa 521
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttcaaattgataaatcatttttagatcaaattttattatcaccttcaataattttatcaa 240


Query: 522 atatagcttctgcaactacttcttta 547
           ||||||||||||||||||||||||||
Sbjct: 241 atatagcttctgcaactacttcttta 266

 Score =  345 bits (174), Expect(2) = 0.0
 Identities = 174/174 (100%)
 Strand = Plus / Plus


Query: 681 attcaaataaaagaaagagtgttgatattgttgcattaaaaactttagatatttcttatt 740
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 attcaaataaaagaaagagtgttgatattgttgcattaaaaactttagatatttcttatt 459


Query: 741 gttcacaatttttatcaagttcaactttaacaaaattaaatcagaattgtaaacaaatga 800
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gttcacaatttttatcaagttcaactttaacaaaattaaatcagaattgtaaacaaatga 519


Query: 801 aaattttacgttataatacaatcggttttaatcataatcatatttattcttaaa 854
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 aaattttacgttataatacaatcggttttaatcataatcatatttattcttaaa 573

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 995,894,409
Number of extensions: 60084721
Number of successful extensions: 4880473
Number of sequences better than 10.0: 83
Length of query: 857
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 833
Effective length of database: 99,340,224,878
Effective search space: 82750407323374
Effective search space used: 82750407323374
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.16
Homology vs Protein 
Query= Contig-U01427-1 (Contig-U01427-1Q) /CSM_Contig/Contig-U01427-1Q.Seq.d
         (857 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000383_1636(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334...    82   2e-14
CP000140_228(CP000140|pid:none) Parabacteroides distasonis ATCC ...    78   4e-13
AJ864554_1(AJ864554|pid:none) Entamoeba moshkovskii partial nagB...    77   6e-13
CP000685_4773(CP000685|pid:none) Flavobacterium johnsoniae UW101...    77   1e-12
CP000685_4518(CP000685|pid:none) Flavobacterium johnsoniae UW101...    74   5e-12
AJ864556_1(AJ864556|pid:none) Trichomonas vaginalis partial mRNA...    74   5e-12
CP000685_2022(CP000685|pid:none) Flavobacterium johnsoniae UW101...    74   6e-12
CP000685_2370(CP000685|pid:none) Flavobacterium johnsoniae UW101...    73   1e-11
CP001032_1002(CP001032|pid:none) Opitutus terrae PB90-1, complet...    67   8e-10
AP006841_3112(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,...    65   2e-09
CP000139_3993(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,...    64   5e-09
(Q8AB53) RecName: Full=Putative glucosamine-6-phosphate deaminas...    64   5e-09
AP009153_2002(AP009153|pid:none) Gemmatimonas aurantiaca T-27 DN...    62   2e-08
AP009380_606(AP009380|pid:none) Porphyromonas gingivalis ATCC 33...    58   4e-07
AE015924_1106(AE015924|pid:none) Porphyromonas gingivalis W83, c...    58   4e-07
CP000159_2470(CP000159|pid:none) Salinibacter ruber DSM 13855, c...    57   1e-06
(A8YTN8) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    52   3e-05
CP000934_1136(CP000934|pid:none) Cellvibrio japonicus Ueda107, c...    52   3e-05
(B0TTP5) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    51   4e-05
FM177140_3024(FM177140|pid:none) Lactobacillus casei BL23 comple...    51   6e-05
BX294138_226(BX294138|pid:none) Rhodopirellula baltica SH 1 comp...    51   6e-05
(Q033M5) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    51   6e-05
(Q18AL0) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    50   7e-05
FM204883_647(FM204883|pid:none) Streptococcus equi subsp. equi 4...    50   1e-04
(O97440) RecName: Full=Glucosamine-6-phosphate isomerase 2;     ...    50   1e-04
(Q88ZS6) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    50   1e-04
DQ219961_1(DQ219961|pid:none) Lactobacillus reuteri 6-phosphoglu...    49   2e-04
(A4QH44) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    49   2e-04
(Q03Z95) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    49   3e-04
AH1414(AH1414) glucosamine-6-phosphate isomerase homolog lmo2721...    49   3e-04
(A0PYW1) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    48   5e-04
AP010656_615(AP010656|pid:none) Candidatus Azobacteroides pseudo...    47   6e-04
(A5I5R9) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    47   6e-04
CP001083_2948(CP001083|pid:none) Clostridium botulinum Ba4 str. ...    47   6e-04
(Q9CFA8) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    47   8e-04
AM946015_1211(AM946015|pid:none) Streptococcus uberis 0140J comp...    47   8e-04
(Q0TML8) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    47   8e-04
CP001078_611(CP001078|pid:none) Clostridium botulinum E3 str. Al...    47   0.001
CP001056_653(CP001056|pid:none) Clostridium botulinum B str. Ekl...    47   0.001
DQ489736_258(DQ489736|pid:none) Leuconostoc citreum KM20, comple...    46   0.001
CP000416_655(CP000416|pid:none) Lactobacillus brevis ATCC 367, c...    46   0.001
(Q03H91) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    46   0.001
CP001107_2845(CP001107|pid:none) Eubacterium rectale ATCC 33656,...    46   0.001
CP000023_518(CP000023|pid:none) Streptococcus thermophilus LMG 1...    46   0.002
CP000262_1246(CP000262|pid:none) Streptococcus pyogenes MGAS1075...    45   0.002
CP000962_2815(CP000962|pid:none) Clostridium botulinum A3 str. L...    45   0.002
(Q8K6Z4) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    45   0.002
CP000260_1209(CP000260|pid:none) Streptococcus pyogenes MGAS1027...    45   0.002
(P59687) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    45   0.002
(B5XM45) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    45   0.002
(A8FRI2) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    45   0.003
CP000509_4430(CP000509|pid:none) Nocardioides sp. JS614, complet...    45   0.003
(A3QB39) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    45   0.003
(Q1WS60) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    45   0.003
CP001175_1640(CP001175|pid:none) Listeria monocytogenes HCC23, c...    45   0.004
(Q92D64) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    45   0.004
(B1YJ30) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    44   0.005
(Q7UVM5) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    44   0.007
(Q6MSF4) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    44   0.007
AP009493_2277(AP009493|pid:none) Streptomyces griseus subsp. gri...    44   0.007
CP000386_1710(CP000386|pid:none) Rubrobacter xylanophilus DSM 99...    44   0.009
CP000605_209(CP000605|pid:none) Bifidobacterium longum DJO10A, c...    44   0.009
(B1VI88) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    43   0.012
AP011115_1249(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp...    43   0.015
(Q0SGH6) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    43   0.015
AM295250_2381(AM295250|pid:none) Staphylococcus carnosus subsp. ...    43   0.015
CP000924_974(CP000924|pid:none) Thermoanaerobacter pseudethanoli...    43   0.015
(A3CLX4) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    43   0.015
CP001620_1786(CP001620|pid:none) Corynebacterium kroppenstedtii ...    42   0.020
S77794(S77794)hypothetical protein MC319 - Mycoplasma capricolum...    42   0.020
(Q9K487) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    42   0.026
(P59689) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    42   0.026
AE005176_1901(AE005176|pid:none) Lactococcus lactis subsp. lacti...    42   0.026
CP001071_1793(CP001071|pid:none) Akkermansia muciniphila ATCC BA...    42   0.026
DQ384318_1(DQ384318|pid:none) Tetrahymena thermophila glucosamin...    42   0.026
(Q8FMI6) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    42   0.034
BA000035_2514(BA000035|pid:none) Corynebacterium efficiens YS-31...    42   0.034
CR382129_56(CR382129|pid:none) Yarrowia lipolytica strain CLIB12...    42   0.034
(Q8R5T0) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    42   0.034
CP000806_1329(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    41   0.044
CP001618_2728(CP001618|pid:none) Beutenbergia cavernae DSM 12333...    41   0.044
AP008957_3957(AP008957|pid:none) Rhodococcus erythropolis PR4 DN...    41   0.044
(Q4L9T8) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    41   0.058
CP000663_157(CP000663|pid:none) Rhodobacter sphaeroides ATCC 170...    40   0.076
(Q9FDX1) RecName: Full=F-box protein SKIP1; AltName: Full=SKP1-i...    40   0.076
CP001601_238(CP001601|pid:none) Corynebacterium aurimucosum ATCC...    40   0.099
CU651637_3604(CU651637|pid:none) Escherichia coli LF82 chromosom...    40   0.099
(A7GS78) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    40   0.099
CP000243_4186(CP000243|pid:none) Escherichia coli UTI89, complet...    40   0.13
CU928145_4088(CU928145|pid:none) Escherichia coli 55989 chromoso...    40   0.13
CP000454_3486(CP000454|pid:none) Arthrobacter sp. FB24, complete...    40   0.13
AE014075_4541(AE014075|pid:none) Escherichia coli CFT073, comple...    40   0.13
(A6TVP5) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    39   0.17
(Q5HRH8) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    39   0.17
(A6VVU9) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    39   0.29
CP001287_2023(CP001287|pid:none) Cyanothece sp. PCC 8801, comple...    39   0.29
(A5IQC3) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    38   0.38
(Q6GJA0) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    38   0.38
AE016822_1560(AE016822|pid:none) Leifsonia xyli subsp. xyli str....    38   0.38
(A0RI59) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    38   0.38
(B7IWG6) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    38   0.49
AE007317_1271(AE007317|pid:none) Streptococcus pneumoniae R6, co...    37   0.84
(Q04JT5) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    37   0.84
AP008957_952(AP008957|pid:none) Rhodococcus erythropolis PR4 DNA...    37   0.84
(Q97Q16) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    37   0.84
AP008957_1219(AP008957|pid:none) Rhodococcus erythropolis PR4 DN...    37   0.84
AM849034_912(AM849034|pid:none) Clavibacter michiganensis subsp....    37   1.1
CP001341_2284(CP001341|pid:none) Arthrobacter chlorophenolicus A...    37   1.1
BA000043_2276(BA000043|pid:none) Geobacillus kaustophilus HTA426...    36   1.4
AM494969_355(AM494969|pid:none) Leishmania braziliensis chromoso...    36   1.9
CP000542_1365(CP000542|pid:none) Verminephrobacter eiseniae EF01...    35   2.4
(Q3ID09) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    35   3.2
CP001357_2579(CP001357|pid:none) Brachyspira hyodysenteriae WA1,...    35   4.2
CP000474_2467(CP000474|pid:none) Arthrobacter aurescens TC1, com...    35   4.2
(Q98QJ9) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    34   7.1
AM502250_383(AM502250|pid:none) Leishmania infantum chromosome 32.     34   7.1
(A6LHV2) RecName: Full=Glucosamine-6-phosphate deaminase;       ...    33   9.3

>CP000383_1636(CP000383|pid:none) Cytophaga hutchinsonii ATCC 33406,
           complete genome.
          Length = 637

 Score = 82.0 bits (201), Expect = 2e-14
 Identities = 39/87 (44%), Positives = 56/87 (64%)
 Frame = +2

Query: 2   FNSKRIILMAFSEGKASIVQKTTEGEITPAIPSTIFQRHQKCQLIIDEAAAVEITRCKQP 181
           F +KRIILMA+ EGKA I++KT EG+IT +IP+T  Q H    +I+D A+  E+TR K P
Sbjct: 204 FKAKRIILMAWGEGKAQIIKKTVEGKITESIPATFLQTHPNVGVILDTASCAELTRIKTP 263

Query: 182 WVIHSTGTTLTIKWSPLLARKAVIWLS 262
           W++ S      + W     ++A +WLS
Sbjct: 264 WLVGS------VYWDEHARKRASVWLS 284

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,045,776,029
Number of extensions: 18153207
Number of successful extensions: 41842
Number of sequences better than 10.0: 117
Number of HSP's gapped: 41818
Number of HSP's successfully gapped: 117
Length of query: 285
Length of database: 1,051,180,864
Length adjustment: 127
Effective length of query: 158
Effective length of database: 640,137,871
Effective search space: 101141783618
Effective search space used: 101141783618
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.86  gvh: 0.41  alm: 0.39  top: 0.27  tms: 0.00  mit: 0.29  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U01427-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0