NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U06911-1
Contig ID Contig-U06911-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U06911-1 (Contig-U06911-1Q) /CSM_Contig/Contig-U06911-1Q.Seq.d
CCACGNGTCCGAAAAAGTTAAGGAATTATTAAAGAGATTTAACTTAATTC
AAAAAAATGGATAGTGTTCGAAAACTAGATCAACCAAATTATACGATGAT
ACTATTACTCATTTCTTTATTTTATAAGTTCACTCAATATTTTAATTGTT
ATTATCACCAAAAACTGCAATATAATACCAATGTTCAAAGCATTTCGTAG
CTTATTCCATAGAAGACGACAACAACAATAACAAACAATTTAGTAATCAA
CCACTCACTCACTCACTCATTTNTTCAATTTATTACACCTATCATAANAT
AGATGTTTTAAAACAAAAGGAAAAATTAATTTTTTCAACTAAAGATAATT
GAAATTATCATAATATTACTAATAAAANATAGTTGACCCCTCTTTTTGAT
TCAACATAAACTAATAAATAAAATAAGTAAAAATAAATAAAAAAAAATAA
AAAAAAAATAAAAAAATAAAAAAATAAAAAAGNAGNATAAGNGNATTTTT
TAAATTAAAA
Gap no gap
Contig length 510
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 4010448
End point 4009955
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U06911
List of clone(s) 

est1=VSH856Z,1,511
est2=VSH856F,57,205
Translated Amino Acid sequence 
hxsekvkellkrfnliqkng*csktrstklyddtithffil*vhsif*lllspktai*YQ
CSKHFVAYSIEDDNNNNKQFSNQPLTHSLIXSIYYTYHXIDVLKQKEKLIFSTKDN*nyh
nitnkx*ltplfdst*tnk*nk*k*ikknkkkikk*knkkxx*xxfln*
Translated Amino Acid sequence (All Frames) 
Frame A:
prvrks*giikei*lnskkwivfen*inqiir*yyysflyfisslniliviitkncniip
mfkafrslfhrrrqqq*qti**stthslthxfnllhls*xrcfktkgkinffn*r*lkls
*yy**xivdpsf*fnin**ik*vkinkkk*kknkkikk*kxxixxffklk


Frame B:
hxsekvkellkrfnliqkng*csktrstklyddtithffil*vhsif*lllspktai*YQ
CSKHFVAYSIEDDNNNNKQFSNQPLTHSLIXSIYYTYHXIDVLKQKEKLIFSTKDN*nyh
nitnkx*ltplfdst*tnk*nk*k*ikknkkkikk*knkkxx*xxfln*


Frame C:
txpkklrny*rdlt*fkkmdsvrkldqpnytmilllislfykftqyfncyyhqklqyntn
vqsis*lip*kttttitnnlvinhslthsfxqfitpiix*mf*nkrkn*ffqlkiieiii
illikxs*plfliqhklinkisknk*kkikkk*knkkikkxxkxif*ik
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06911-1 (Contig-U06911-1Q)
/CSM_Contig/Contig-U06911-1Q.Seq.d
         (510 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06911-1 (Contig-U06911-1Q) /CSM_Contig/Conti...   737  0.0
Contig-U13902-1 (Contig-U13902-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U01253-1 (Contig-U01253-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U14176-1 (Contig-U14176-1Q) /CSM_Contig/Conti...    36  0.035
Contig-U13881-1 (Contig-U13881-1Q) /CSM_Contig/Conti...    36  0.035
Contig-U12817-1 (Contig-U12817-1Q) /CSM_Contig/Conti...    36  0.035
Contig-U11922-1 (Contig-U11922-1Q) /CSM_Contig/Conti...    36  0.035
Contig-U11279-1 (Contig-U11279-1Q) /CSM_Contig/Conti...    36  0.035
Contig-U12082-1 (Contig-U12082-1Q) /CSM_Contig/Conti...    30  2.2

>Contig-U06911-1 (Contig-U06911-1Q) /CSM_Contig/Contig-U06911-1Q.Seq.d
          Length = 510

 Score =  737 bits (372), Expect = 0.0
 Identities = 398/405 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccacgngtccgaaaaagttaaggaattattaaagagatttaacttaattcnnnnnnntgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||       |||
Sbjct: 1   ccacgngtccgaaaaagttaaggaattattaaagagatttaacttaattcaaaaaaatgg 60

                                                                       
Query: 61  atagtgttcgaaaactagatcaaccaaattatacgatgatactattactcatttctttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atagtgttcgaaaactagatcaaccaaattatacgatgatactattactcatttctttat 120

                                                                       
Query: 121 tttataagttcactcaatattttaattgttattatcaccaaaaactgcaatataatacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttataagttcactcaatattttaattgttattatcaccaaaaactgcaatataatacca 180

                                                                       
Query: 181 atgttcaaagcatttcgtagcttattccatagaagacgacaacaacaataacaaacaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atgttcaaagcatttcgtagcttattccatagaagacgacaacaacaataacaaacaatt 240

                                                                       
Query: 241 tagtaatcaaccactcactcactcactcatttnttcaatttattacacctatcataanat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagtaatcaaccactcactcactcactcatttnttcaatttattacacctatcataanat 300

                                                                       
Query: 301 agatgttttaaaacaaaaggaaaaattaattttttcaactaaagataattgaaattatca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agatgttttaaaacaaaaggaaaaattaattttttcaactaaagataattgaaattatca 360

                                                        
Query: 361 taatattactaataaaanatagttgacccctctttttgattcaac 405
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 taatattactaataaaanatagttgacccctctttttgattcaac 405


 Score = 36.2 bits (18), Expect = 0.035
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 487 ataagngnattttttaaattaaaa 510
           ||||||||||||||||||||||||
Sbjct: 487 ataagngnattttttaaattaaaa 510


 Score = 28.2 bits (14), Expect = 8.6
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 321 aaaaattaattttt 334
           ||||||||||||||
Sbjct: 334 aaaaattaattttt 321


>Contig-U13902-1 (Contig-U13902-1Q) /CSM_Contig/Contig-U13902-1Q.Seq.d
          Length = 2177

 Score = 38.2 bits (19), Expect = 0.009
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                       
Query: 305  gttttaaaacaaaaggaaaaattaatt 331
            ||||||||  |||||||||||||||||
Sbjct: 2065 gttttaaagaaaaaggaaaaattaatt 2091


>Contig-U01253-1 (Contig-U01253-1Q) /CSM_Contig/Contig-U01253-1Q.Seq.d
          Length = 1118

 Score = 38.2 bits (19), Expect = 0.009
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 320 gaaaaattaattttttcaa 338
           |||||||||||||||||||
Sbjct: 275 gaaaaattaattttttcaa 293


 Score = 28.2 bits (14), Expect = 8.6
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 321 aaaaattaattttt 334
           ||||||||||||||
Sbjct: 289 aaaaattaattttt 276


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9779
Number of Sequences: 6905
Number of extensions: 9779
Number of successful extensions: 1204
Number of sequences better than 10.0: 385
length of query: 510
length of database: 5,674,871
effective HSP length: 16
effective length of query: 494
effective length of database: 5,564,391
effective search space: 2748809154
effective search space used: 2748809154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11.10
Homology vs DNA 
Query= Contig-U06911-1 (Contig-U06911-1Q) /CSM_Contig/Contig-U06911-1Q.Seq.d
         (510 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU268078) Dictyostelium discoideum vegetative cDNA clone:VS...   666   0.0    3
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...   672   0.0    2
(AY160102) Dictyostelium discoideum nucleotide exchange fact...   672   0.0    2
(AU268077) Dictyostelium discoideum vegetative cDNA clone:VS...   287   2e-73  1
(AC171131) Helobdella robusta clone CH306-1A2, complete sequ...    46   0.002  4
(AC171127) Helobdella robusta clone CH306-1A1, WORKING DRAFT...    46   0.004  2
(AC023134) Homo sapiens chromosome 5 clone RP11-463C5, compl...    42   0.028  2
(AL669859) Mouse DNA sequence from clone RP23-167D6 on chrom...    40   0.067  4
(CU280367) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   0.068  5
(AC178085) Strongylocentrotus purpuratus clone R3-3060L4, WO...    46   0.074  4
(AC181491) Strongylocentrotus purpuratus clone R3-1111F21, W...    50   0.078  1
(AC176174) Strongylocentrotus purpuratus clone R3-3066I3, WO...    50   0.078  1
(CZ858506) OC__Ba0250I19.r OC__Ba Oryza coarctata genomic cl...    50   0.078  1
(CT956455) Equus caballus GSS, BAC clone CH241-30H23, SP6 en...    50   0.078  1
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    34   0.090  8
(AC139341) Atelerix albiventris clone LB4-464N6, complete se...    38   0.27   5
(AC112386) Rattus norvegicus clone CH230-361J13, *** SEQUENC...    48   0.31   1
(ER617842) 1093017354333 Global-Ocean-Sampling_GS-36-01-01-2...    48   0.31   1
(EJ726541) 1092959508690 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.31   1
(EJ679696) 1092955118257 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.31   1
(EJ496125) 1095403574582 Global-Ocean-Sampling_GS-28-01-01-1...    48   0.31   1
(DN170350) LH__Ea06O07.f LH__Ea Solanum habrochaites cDNA cl...    48   0.31   1
(EX623152) 255423542 Pea aphid whole body normalized full le...    48   0.31   1
(BX890602) Zebrafish DNA sequence from clone DKEYP-109H9 in ...    42   0.31   3
(AC187180) Atelerix albiventris clone LB4-96C17, WORKING DRA...    38   0.34   5
(AL731687) Mouse DNA sequence from clone RP23-56I20 on chrom...    36   0.36   4
(AC034286) Mus musculus chromosome 11 clone RP23-2E22 map 11...    40   0.37   4
(AC187680) Atelerix albiventris clone LB4-300P4, WORKING DRA...    38   0.38   5
(AL928672) Zebrafish DNA sequence from clone CH211-136O4 in ...    46   0.41   2
(AC181239) Strongylocentrotus purpuratus clone R3-4010K2, WO...    46   0.41   3
(AL357511) Human DNA sequence *** SEQUENCING IN PROGRESS ***...    36   0.43   6
(BX495865) Homo sapiens mRNA; EST DKFZp779M0324_r1  (from cl...    42   0.44   2
(AC179477) Strongylocentrotus purpuratus clone R3-63M1, WORK...    36   0.47   5
(M93716) Pan paniscus DNA fragment.                                36   0.49   3
(AC123198) Rattus norvegicus clone CH230-93L9, *** SEQUENCIN...    44   0.49   3
(AC127398) Rattus norvegicus clone CH230-177E11, *** SEQUENC...    42   0.53   3
(AC183854) Atelerix albiventris clone LB4-468K18, WORKING DR...    36   0.55   4
(AC021146) Homo sapiens BAC clone RP11-468N14 from 4, comple...    38   0.63   6
(AL845328) Zebrafish DNA sequence from clone DKEY-16K6 in li...    36   0.65   2
(AC096962) Rattus norvegicus clone CH230-95L19, WORKING DRAF...    42   0.65   4
(CR847806) Zebrafish DNA sequence from clone CH211-267J10 in...    36   0.66   2
(AX344555) Sequence 6 from Patent WO0200932.                       34   0.72   7
(DU112721) KBrH105O02R Brassica rapa BAC library KBrH Brassi...    36   0.85   2
(AC205185) MACACA MULATTA BAC clone CH250-416D14 from chromo...    38   0.86   4
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098...    32   0.92   8
(AC223846) Bos taurus clone CH240-456E21, WORKING DRAFT SEQU...    42   0.94   5
(AC225345) Zea mays chromosome 1 clone CH201-540M5; ZMMBBc05...    36   1.1    4
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    36   1.1    6
(AL713974) Mouse DNA sequence from clone RP23-135I10 on chro...    36   1.2    4
(CR396590) Zebrafish DNA sequence from clone CH211-238P8 in ...    46   1.2    1
(CR361560) Zebrafish DNA sequence from clone CH211-122G18 in...    46   1.2    1
(BX088594) Zebrafish DNA sequence from clone RP71-1G17 in li...    46   1.2    1
(BX005074) Zebrafish DNA sequence from clone CH211-146J7 in ...    46   1.2    1
(AL935192) Zebrafish DNA sequence from clone CH211-252B2.          46   1.2    1
(BV587351) G591P632181RE10.T0 Clint Pan troglodytes verus ST...    46   1.2    1
(BV586862) G591P632151RE10.T0 Clint Pan troglodytes verus ST...    46   1.2    1
(AC126262) Mus musculus BAC clone RP23-359F12 from chromosom...    46   1.2    1
(AC121951) Mus musculus BAC clone RP24-217M7 from 9, complet...    46   1.2    1
(AY575623) Aquilegia chrysantha clone D03 microsatellite seq...    46   1.2    1
(AY575619) Aquilegia chrysantha clone B15 microsatellite seq...    46   1.2    1
(AL096843) Human DNA sequence from clone RP11-262A13 on chro...    46   1.2    1
(AC152652) Bos taurus clone CH240-15G4, WORKING DRAFT SEQUEN...    46   1.2    1
(AC137528) Rattus norvegicus strain Brown Norway clone CH230...    46   1.2    1
(AC137360) Rattus norvegicus clone CH230-unknown, *** SEQUEN...    46   1.2    1
(AC131439) Rattus norvegicus clone CH230-5G24, *** SEQUENCIN...    46   1.2    1
(AC123360) Rattus norvegicus clone CH230-64B21, WORKING DRAF...    46   1.2    1
(AC120077) Rattus norvegicus clone CH230-447F6, *** SEQUENCI...    46   1.2    1
(AC097156) Rattus norvegicus clone CH230-140N14, WORKING DRA...    46   1.2    1
(AC095456) Rattus norvegicus clone CH230-7J2, *** SEQUENCING...    46   1.2    1
(CU179701) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    46   1.2    1
(AC224789) Bos taurus clone CH240-476H1, WORKING DRAFT SEQUE...    46   1.2    1
(AC223570) Bos taurus clone CH240-465D13, WORKING DRAFT SEQU...    46   1.2    1
(AC214907) Pan troglodytes clone rp43-22d22, WORKING DRAFT S...    46   1.2    1
(AC197822) Macaca mulatta clone CH250-405O14, WORKING DRAFT ...    46   1.2    1
(AC185070) Bos taurus clone CH240-91J10, WORKING DRAFT SEQUE...    46   1.2    1
(AC181287) Strongylocentrotus purpuratus clone R3-4017A14, W...    46   1.2    1
(BH152275) ENTPL90TF Entamoeba histolytica Sheared DNA Entam...    46   1.2    1
(BH151200) ENTPE57TF Entamoeba histolytica Sheared DNA Entam...    46   1.2    1
(AZ980600) 2M0257N08R Mouse 10kb plasmid UUGC2M library Mus ...    46   1.2    1
(AZ574426) 328PvE10 Pv MBN #30 Plasmodium vivax genomic 3', ...    46   1.2    1
(FH483370) CHO_OF4196xm04f1.ab1 CHO_OF4 Nicotiana tabacum ge...    46   1.2    1
(FH381478) CHO_OF4742xk23r1.ab1 CHO_OF4 Nicotiana tabacum ge...    46   1.2    1
(DX521707) GH_MBb0048K06f GH_MBb Gossypium hirsutum genomic ...    46   1.2    1
(DU016693) 239221 Tomato MboI BAC Library Solanum lycopersic...    46   1.2    1
(DE925796) Macropus eugenii DNA, BAC clone: MEB1-114K09_R, 3...    46   1.2    1
(CE061448) tigr-gss-dog-17000322584342 Dog Library Canis lup...    46   1.2    1
(EE740981) PMAH-aab91e08.g1 Lamprey_EST_Olfactory Petromyzon...    46   1.2    1
(CO544583) LyEST12401 Sea lamprey LyEST Petromyzon marinus c...    46   1.2    1
(CF301663) 7LEAF--06-J20.b1 Rice leaf plasmid cDNA library I...    46   1.2    1
(FG253080) CBYG1302.g1 CBYG Cercospora zeae-maydis conidiati...    46   1.2    1
(FG253079) CBYG1302.b1 CBYG Cercospora zeae-maydis conidiati...    46   1.2    1
(FG243788) CBYB2420.g1 CBYB Cercospora zeae-maydis cercospor...    46   1.2    1
(FD701932) CAAA11094.fwd CAAA Petromyzon marinus Petromyzon ...    46   1.2    1
(EY320668) CAWX750.rev CAWX Helobdella robusta Primary Early...    46   1.2    1
(EY314474) CAWX25530.rev CAWX Helobdella robusta Primary Ear...    46   1.2    1
(AE016823) Leptospira interrogans serovar Copenhageni str. F...    46   1.2    1
(AE010300) Leptospira interrogans serovar lai str. 56601 chr...    46   1.2    1
(AC209271) Populus trichocarpa clone POP054-F16, complete se...    36   1.2    4
(EG552725) MM02P13_XP Sugar Beet germination cDNA library Be...    30   1.4    3
(AC177364) Strongylocentrotus purpuratus clone R3-1032F1, WO...    40   1.5    3

>(AU268078) Dictyostelium discoideum vegetative cDNA clone:VSH856,
           3' end single read.
          Length = 511

 Score =  666 bits (336), Expect(3) = 0.0
 Identities = 347/348 (99%)
 Strand = Plus / Plus


Query: 58  tggatagtgttcgaaaactagatcaaccaaattatacgatgatactattactcatttctt 117
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  tggatagtgttngaaaactagatcaaccaaattatacgatgatactattactcatttctt 117


Query: 118 tattttataagttcactcaatattttaattgttattatcaccaaaaactgcaatataata 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 tattttataagttcactcaatattttaattgttattatcaccaaaaactgcaatataata 177


Query: 178 ccaatgttcaaagcatttcgtagcttattccatagaagacgacaacaacaataacaaaca 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ccaatgttcaaagcatttcgtagcttattccatagaagacgacaacaacaataacaaaca 237


Query: 238 atttagtaatcaaccactcactcactcactcatttnttcaatttattacacctatcataa 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 atttagtaatcaaccactcactcactcactcatttnttcaatttattacacctatcataa 297


Query: 298 natagatgttttaaaacaaaaggaaaaattaattttttcaactaaagataattgaaatta 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 natagatgttttaaaacaaaaggaaaaattaattttttcaactaaagataattgaaatta 357


Query: 358 tcataatattactaataaaanatagttgacccctctttttgattcaac 405
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tcataatattactaataaaanatagttgacccctctttttgattcaac 405

 Score = 93.7 bits (47), Expect(3) = 0.0
 Identities = 50/50 (100%)
 Strand = Plus / Plus


Query: 1  ccacgngtccgaaaaagttaaggaattattaaagagatttaacttaattc 50
          ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ccacgngtccgaaaaagttaaggaattattaaagagatttaacttaattc 50

 Score = 36.2 bits (18), Expect(3) = 0.0
 Identities = 24/24 (100%)
 Strand = Plus / Plus


Query: 487 ataagngnattttttaaattaaaa 510
           ||||||||||||||||||||||||
Sbjct: 487 ataagngnattttttaaattaaaa 510

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 566,468,732
Number of extensions: 40483575
Number of successful extensions: 3918313
Number of sequences better than 10.0: 316
Length of query: 510
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 487
Effective length of database: 93,106,754,628
Effective search space: 45342989503836
Effective search space used: 45342989503836
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 6.23
Homology vs Protein 
Query= Contig-U06911-1 (Contig-U06911-1Q) /CSM_Contig/Contig-U06911-1Q.Seq.d
         (510 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL844509_396(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    36   0.61
(Q55GR7) RecName: Full=ELMO domain-containing protein F;               33   3.0
BC044329_1(BC044329|pid:none) Xenopus laevis heat shock protein ...    32   8.8
FN392322_966(FN392322|pid:none) Pichia pastoris GS115 chromosome...    32   8.8

>AL844509_396(AL844509|pid:none) Plasmodium falciparum 3D7
           chromosome 13.
          Length = 1202

 Score = 35.8 bits (81), Expect = 0.61
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +2

Query: 209 IEDDNNNNKQFSNQPLTHSLIXSIYYTYHXIDVLKQKEKLIFSTKDN*NYHNIT 370
           IE  N NN   +N     S+I +IY   + ID+LK  E ++   ++  N+ N T
Sbjct: 206 IEPPNRNNNNNNNNMRGVSIINNIYNNLNNIDILKSSETILLQDQNKINFSNKT 259

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 502,889,659
Number of extensions: 7332270
Number of successful extensions: 18554
Number of sequences better than 10.0: 4
Number of HSP's gapped: 18503
Number of HSP's successfully gapped: 4
Length of query: 170
Length of database: 1,040,966,779
Length adjustment: 119
Effective length of query: 51
Effective length of database: 659,656,864
Effective search space: 33642500064
Effective search space used: 33642500064
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.75  gvh: 0.31  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for Contig-U06911-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0