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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U06890-1
Contig ID Contig-U06890-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U06890-1 (Contig-U06890-1Q) /CSM_Contig/Contig-U06890-1Q.Seq.d
GTCCAATGTTTGACCTTATAAATATTTTTGAAATCTTTTTACCACAATTA
CTTTTATACCCAAATCCAACTGACCCATTAAATGGTGAAGCTGCATCGAT
GCTTTTAAAGGAACCTGAAAAATATAAGATAAAAGTAAAAGAATTTGTTA
ATAAATATGCATCAGATAATTCTGAAAATGATGAAAGTGAATCAGAAAGT
GATCTTTCATCATACTCTGACTCTTCTGATAATGATGATAATGACAACAA
TGAAAAATTCCCTATTGATGATCTTTAAACAACTACCCATCTTCATTCAT
TTCACGCAAATTGTAGACTTAAATAGCATATTCCAAACACGAACTTTTTC
ATTCAATATATTTATCCTCTTATATATATAATCAACATAATAATTAAAAT
AATAATAATAATAATTAATAACAACAATAATAATAAAAATATATACTTGT
AAATATTTCAAAAAAAAA
Gap no gap
Contig length 468
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 2881451
End point 2881012
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 4
Link to clone list U06890
List of clone(s) 

est1=VSH635F,1,469
est2=VSH635Z,1,428
est3=VSJ560F,172,469
est4=VSJ560Z,172,434
Translated Amino Acid sequence 
PMFDLINIFEIFLPQLLLYPNPTDPLNGEAASMLLKEPEKYKIKVKEFVNKYASDNSEND
ESESESDLSSYSDSSDNDDNDNNEKFPIDDL*ttthlhsfhancrlk*hipntnffiqyi
ypliyiiniiikiiiiiinnnnnnkniyl*ifqkk
Translated Amino Acid sequence (All Frames) 
Frame A:
vqcltl*iflksfyhnyfytqiqlth*mvklhrcf*rnlknir*k*knllinmhqiilkm
mkvnqkvifhhtltllimmimttmknsllmifkqlpifihftqivdlnsifqtrtfsfni
fillyi*st**lk*****littiiikiytckyfkkk


Frame B:
snv*pykyf*nlfttitfipksn*pikw*scidafkgt*ki*dkskric**icir*f*k*
*k*irk*sfiil*lf******qq*kipy**slnnypssfisrkl*t*iayskhelfhsiy
lssyiynqhnn*nnnnnn**qq***kyilvniskk


Frame C:
PMFDLINIFEIFLPQLLLYPNPTDPLNGEAASMLLKEPEKYKIKVKEFVNKYASDNSEND
ESESESDLSSYSDSSDNDDNDNNEKFPIDDL*ttthlhsfhancrlk*hipntnffiqyi
ypliyiiniiikiiiiiinnnnnnkniyl*ifqkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06890-1 (Contig-U06890-1Q)
/CSM_Contig/Contig-U06890-1Q.Seq.d
         (468 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06890-1 (Contig-U06890-1Q) /CSM_Contig/Conti...   702  0.0
Contig-U11796-1 (Contig-U11796-1Q) /CSM_Contig/Conti...    38  0.008
Contig-U14691-1 (Contig-U14691-1Q) /CSM_Contig/Conti...    36  0.032
Contig-U13880-1 (Contig-U13880-1Q) /CSM_Contig/Conti...    36  0.032
Contig-U11812-1 (Contig-U11812-1Q) /CSM_Contig/Conti...    36  0.032
Contig-U10026-1 (Contig-U10026-1Q) /CSM_Contig/Conti...    36  0.032
Contig-U06386-1 (Contig-U06386-1Q) /CSM_Contig/Conti...    36  0.032
Contig-U05944-1 (Contig-U05944-1Q) /CSM_Contig/Conti...    36  0.032
Contig-U05215-1 (Contig-U05215-1Q) /CSM_Contig/Conti...    36  0.032
Contig-U02155-1 (Contig-U02155-1Q) /CSM_Contig/Conti...    36  0.032

>Contig-U06890-1 (Contig-U06890-1Q) /CSM_Contig/Contig-U06890-1Q.Seq.d
          Length = 468

 Score =  702 bits (354), Expect = 0.0
 Identities = 354/354 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtccaatgtttgaccttataaatatttttgaaatctttttaccacaattacttttatacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtccaatgtttgaccttataaatatttttgaaatctttttaccacaattacttttatacc 60

                                                                       
Query: 61  caaatccaactgacccattaaatggtgaagctgcatcgatgcttttaaaggaacctgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  caaatccaactgacccattaaatggtgaagctgcatcgatgcttttaaaggaacctgaaa 120

                                                                       
Query: 121 aatataagataaaagtaaaagaatttgttaataaatatgcatcagataattctgaaaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aatataagataaaagtaaaagaatttgttaataaatatgcatcagataattctgaaaatg 180

                                                                       
Query: 181 atgaaagtgaatcagaaagtgatctttcatcatactctgactcttctgataatgatgata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atgaaagtgaatcagaaagtgatctttcatcatactctgactcttctgataatgatgata 240

                                                                       
Query: 241 atgacaacaatgaaaaattccctattgatgatctttaaacaactacccatcttcattcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atgacaacaatgaaaaattccctattgatgatctttaaacaactacccatcttcattcat 300

                                                                 
Query: 301 ttcacgcaaattgtagacttaaatagcatattccaaacacgaactttttcattc 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttcacgcaaattgtagacttaaatagcatattccaaacacgaactttttcattc 354


 Score = 28.2 bits (14), Expect = 7.9
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 446 cttgtaaatatttc 459
           ||||||||||||||
Sbjct: 446 cttgtaaatatttc 459


>Contig-U11796-1 (Contig-U11796-1Q) /CSM_Contig/Contig-U11796-1Q.Seq.d
          Length = 1662

 Score = 38.2 bits (19), Expect = 0.008
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                       
Query: 227  tgataatgatgataatgacaacaatga 253
            |||||||||||||||||| || |||||
Sbjct: 1440 tgataatgatgataatgataataatga 1466


 Score = 34.2 bits (17), Expect = 0.13
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                 
Query: 227  tgataatgatgataatgacaa 247
            ||||||| |||||||||||||
Sbjct: 1455 tgataataatgataatgacaa 1475


>Contig-U14691-1 (Contig-U14691-1Q) /CSM_Contig/Contig-U14691-1Q.Seq.d
          Length = 2424

 Score = 36.2 bits (18), Expect = 0.032
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 130  taaaagtaaaagaatttg 147
            ||||||||||||||||||
Sbjct: 1279 taaaagtaaaagaatttg 1262


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5468
Number of Sequences: 6905
Number of extensions: 5468
Number of successful extensions: 761
Number of sequences better than 10.0: 275
length of query: 468
length of database: 5,674,871
effective HSP length: 16
effective length of query: 452
effective length of database: 5,564,391
effective search space: 2515104732
effective search space used: 2515104732
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11.10
Homology vs DNA 
Query= Contig-U06890-1 (Contig-U06890-1Q) /CSM_Contig/Contig-U06890-1Q.Seq.d
         (468 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU267744) Dictyostelium discoideum vegetative cDNA clone:VS...   702   0.0    1
(AU267745) Dictyostelium discoideum vegetative cDNA clone:VS...   696   0.0    1
(AU270116) Dictyostelium discoideum vegetative cDNA clone:VS...   363   4e-96  1
(AU270115) Dictyostelium discoideum vegetative cDNA clone:VS...   363   4e-96  1
(BE224253) kp58f11.y1 TBN95TM-SSFH Strongyloides stercoralis...    66   2e-09  2
(BG226579) kp91a04.y1 TBN95TM-SSFH Strongyloides stercoralis...    62   2e-05  1
(FE250567) CAPH2929.fwd CAPH Naegleria gruberi amoeba stage ...    62   2e-05  1
(FE250566) CAPH2929.rev CAPH Naegleria gruberi amoeba stage ...    62   2e-05  1
(BG226234) kq19b01.y1 TBN95TM-SSR Strongyloides stercoralis ...    58   3e-04  1
(DY885628) CeleSEQ944 Cunninghamella elegans pBluescript (Ec...    40   0.001  2
(BY891176) Cryptomeria japonica cDNA clone: CMFL037_H17, 5'e...    44   0.001  2
(BY904213) Cryptomeria japonica cDNA clone: CMFL023_G23, 3'e...    36   0.001  3
(BW994922) Cryptomeria japonica cDNA, clone: CM03213, 3' end...    36   0.002  3
(AP001182) Homo sapiens genomic DNA, chromosome 11q23 clone:...    46   0.003  3
(AC116728) Mus musculus chromosome 3, clone RP23-345H12, com...    54   0.005  1
(AC098849) Mus musculus chromosome 3, clone RP23-12L23, comp...    54   0.005  1
(ES281251) pp003-a09.T7.185889.ab1 non-sporulating culture o...    54   0.005  1
(EL926280) NY4ThAmp1_1_C05.g1_A039 NY4 theronts: amplified l...    40   0.006  2
(CN494880) Mdfw2028e02.y1 Mdfw Malus x domestica cDNA clone ...    52   0.018  1
(EX923162) la75b12.g2 Cycas ovule - normalized (NYBG) Cycas ...    36   0.056  2
(DW046282) CLLX1301.b1_J13.ab1 CLL(XYZ) lettuce saligna Lact...    38   0.056  2
(CX084866) EHABX22TR E. histolytica Normalized cDNA library ...    46   0.068  2
(DV488203) 5538_A09_A18RZ_079 Brachypodium distachyon root E...    50   0.071  1
(DT715648) s13dFA47E04SD035_513504 Tall fescue, Festuca arun...    50   0.071  1
(DT707630) s13dFA15E04ST023_112354 Tall fescue, Festuca arun...    50   0.071  1
(DT684704) s13dFA10F09FS079_518556 Tall fescue, Festuca arun...    50   0.071  1
(DT677459) s13dFA53A07DR053_495308 Tall fescue, Festuca arun...    50   0.071  1
(DT677083) s13dFA33E11DR087_494370 Tall fescue, Festuca arun...    50   0.071  1
(DT675983) s13dFA29H06DR048_140636 Tall fescue, Festuca arun...    50   0.071  1
(DT675109) s13dFA13E10DR071_110992 Tall fescue, Festuca arun...    50   0.071  1
(BQ588606) E012562-024-015-J09-SP6 MPIZ-ADIS-024-storage roo...    50   0.071  1
(CX089593) EHAE127TR E. histolytica Normalized cDNA library ...    46   0.095  2
(BW996928) Cryptomeria japonica cDNA, clone: CR1282, express...    32   0.18   3
(BT035902) Zea mays full-length cDNA clone ZM_BFb0087L24 mRN...    38   0.21   2
(CO447203) MZCCL10104H05.g Maize Endosperm cDNA Library Zea ...    38   0.21   2
(CO460803) MZCCS15021F02.g Maize Endosperm cDNA Library Zea ...    38   0.21   2
(DR799337) ZM_BFb0022D18.r ZM_BFb Zea mays cDNA 5', mRNA seq...    38   0.21   2
(DV511315) ZM_BFb0191G16.r ZM_BFb Zea mays cDNA 5', mRNA seq...    38   0.21   2
(DR813188) ZM_BFb0042D17.r ZM_BFb Zea mays cDNA 5', mRNA seq...    38   0.21   2
(BT016989) Zea mays clone EK07D2304F01.c mRNA sequence.            38   0.21   2
(DR967064) ZM_BFb0087L24.r ZM_BFb Zea mays cDNA 5', mRNA seq...    38   0.21   2
(CF637371) zmrww00_0B20-005-a01.s4 zmrww00 Zea mays cDNA 3',...    38   0.21   2
(DR821237) ZM_BFb0060G22.f ZM_BFb Zea mays cDNA 3', mRNA seq...    38   0.21   2
(DN232908) MEST878_G03.T7-1 UGA-ZmSAM-XZ2 Zea mays cDNA, mRN...    38   0.21   2
(DN233214) MEST949_D09.T7-1 UGA-ZmSAM-XZ2 Zea mays cDNA, mRN...    38   0.21   2
(DN233788) MEST1116_C04.T7-1 UGA-ZmSAM-XZ2 Zea mays cDNA, mR...    38   0.21   2
(CF272784) EST2990 Zea mays sperm cell cDNA library Zea mays...    38   0.21   2
(DV942695) 1000147-B01.T7-1 UGI-Reseq Zea mays cDNA, mRNA se...    38   0.21   2
(CF920112) EST4412 Zea mays sperm cell cDNA library Zea mays...    38   0.21   2
(CD448231) EK07D2304F01.g Endosperm_6 Zea mays cDNA, mRNA se...    38   0.21   2
(DR967063) ZM_BFb0087L24.f ZM_BFb Zea mays cDNA 3', mRNA seq...    38   0.21   2
(CF384597) EST3446 Zea mays sperm cell cDNA library Zea mays...    38   0.21   2
(CD974603) QAE48b10.yg QAE Zea mays cDNA clone QAE48b10, mRN...    38   0.21   2
(CF075577) EST2396 Zea mays sperm cell cDNA library Zea mays...    38   0.21   2
(CF272741) EST2947 Zea mays sperm cell cDNA library Zea mays...    38   0.21   2
(BG320461) Zm03_10d10_A Zm03_AAFC_ECORC_cold_stressed_maize_...    38   0.21   2
(CD526566) EST1998 Zea mays sperm cell cDNA library Zea mays...    38   0.21   2
(DN204413) MEST804_F02.T7-1 UGA-ZmSAM-XZ2 Zea mays cDNA, mRN...    38   0.21   2
(BM332707) MEST176-E09.T3 ISUM5-RN Zea mays cDNA clone MEST1...    38   0.21   2
(BM078301) MEST117-G04.T3 ISUM4-TN Zea mays cDNA clone MEST1...    38   0.21   2
(CD996353) QBC2g06.xg QBC Zea mays cDNA clone QBC2g06, mRNA ...    38   0.21   2
(CF075594) EST2413 Zea mays sperm cell cDNA library Zea mays...    38   0.21   2
(AI438501) 486006A05.x4 486 - leaf primordia cDNA library fr...    38   0.21   2
(AI861145) 603012G11.x1 603 - stressed root cDNA library fro...    38   0.21   2
(CD448638) EK07D2304F01.b Endosperm_6 Zea mays cDNA, mRNA se...    38   0.21   2
(CF920160) EST4460 Zea mays sperm cell cDNA library Zea mays...    38   0.21   2
(CD996419) QBC3f04.xg QBC Zea mays cDNA clone QBC3f04, mRNA ...    38   0.21   2
(CF017805) QBM3h05.xg QBM Zea mays cDNA clone QBM3h05, mRNA ...    38   0.21   2
(BM078587) MEST121-G04.T3 ISUM4-TN Zea mays cDNA clone MEST1...    38   0.21   2
(CB179710) EST0814 Zea mays sperm cell cDNA library Zea mays...    38   0.21   2
(CF054562) QCN30a06.yg QCN Zea mays cDNA clone QCN30a06, mRN...    38   0.21   2
(DT642297) ZM_BFb0100L24.r ZM_BFb Zea mays cDNA 5', mRNA seq...    38   0.21   2
(CF054265) QCN27b03.yg QCN Zea mays cDNA clone QCN27b03, mRN...    38   0.21   2
(AI391933) 486005E02.x1 486 - leaf primordia cDNA library fr...    38   0.21   2
(DR799336) ZM_BFb0022D18.f ZM_BFb Zea mays cDNA 3', mRNA seq...    38   0.21   2
(AI391947) 486005G05.x1 486 - leaf primordia cDNA library fr...    38   0.21   2
(CF016365) QBM15a06.xg QBM Zea mays cDNA clone QBM15a06, mRN...    38   0.21   2
(BM074198) MEST82-G01.T3 ISUM4-TN Zea mays cDNA clone MEST82...    38   0.21   2
(CO443301) MZCCL10055E08.g Maize Endosperm cDNA Library Zea ...    38   0.21   2
(CF048240) QCL19f06.yg QCL Zea mays cDNA clone QCL19f06, mRN...    38   0.22   2
(BQ539346) MEST615-C04.T3 ISUM4-TN Zea mays cDNA clone MEST6...    38   0.22   2
(CF048480) QCL23b11.yg QCL Zea mays cDNA clone QCL23b11, mRN...    38   0.22   2
(AI391833) 486006A05.x1 486 - leaf primordia cDNA library fr...    38   0.22   2
(AI391764) 486005B08.x4 486 - leaf primordia cDNA library fr...    38   0.22   2
(T15289) 5c05d12-t7 membrane-free polysomes from endosperm Z...    38   0.22   2
(FD954152) RS3FU17TF RS3(RT) Raphanus sativus cDNA 5', mRNA ...    36   0.22   2
(BY913074) Cryptomeria japonica cDNA clone: CMFL050_C05, 3'e...    32   0.22   3
(AC132607) Mus musculus BAC clone RP23-447F22 from 12, compl...    44   0.25   3
(BY895780) Cryptomeria japonica cDNA clone: CMFL050_C05, 5'e...    32   0.28   3
(AC178903) Strongylocentrotus purpuratus clone R3-3114N5, WO...    48   0.28   1
(AZ680023) ENTJM41TR Entamoeba histolytica Sheared DNA Entam...    48   0.28   1
(AZ523062) 214PbH05 Pb MBN #21 Plasmodium berghei genomic 3'...    48   0.28   1
(DE144715) Bombyx mori genomic DNA, Fosmid clone:RO0283-A14_R.     48   0.28   1
(CL120917) ISB1-79K24_T7.1 ISB1 Xenopus (Silurana) tropicali...    48   0.28   1
(EC713840) MCE00003636 Malawimonas californiana Company (LAR...    48   0.28   1
(DT715105) s13dFA51E12SD099_512418 Tall fescue, Festuca arun...    48   0.28   1
(DT599182) wmi03-12ms2-h04 Wmi03 Welwitschia mirabilis cDNA ...    48   0.28   1
(DC227886) Plasmodium berghei strain ANKA cDNA clone:SG01046...    48   0.28   1
(DC226675) Plasmodium berghei strain ANKA cDNA clone:SG00665...    48   0.28   1
(DC226587) Plasmodium berghei strain ANKA cDNA clone:SG00635...    48   0.28   1

>(AU267744) Dictyostelium discoideum vegetative cDNA clone:VSH635,
           5' end single read.
          Length = 469

 Score =  702 bits (354), Expect = 0.0
 Identities = 354/354 (100%)
 Strand = Plus / Plus


Query: 1   gtccaatgtttgaccttataaatatttttgaaatctttttaccacaattacttttatacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtccaatgtttgaccttataaatatttttgaaatctttttaccacaattacttttatacc 60


Query: 61  caaatccaactgacccattaaatggtgaagctgcatcgatgcttttaaaggaacctgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  caaatccaactgacccattaaatggtgaagctgcatcgatgcttttaaaggaacctgaaa 120


Query: 121 aatataagataaaagtaaaagaatttgttaataaatatgcatcagataattctgaaaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aatataagataaaagtaaaagaatttgttaataaatatgcatcagataattctgaaaatg 180


Query: 181 atgaaagtgaatcagaaagtgatctttcatcatactctgactcttctgataatgatgata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atgaaagtgaatcagaaagtgatctttcatcatactctgactcttctgataatgatgata 240


Query: 241 atgacaacaatgaaaaattccctattgatgatctttaaacaactacccatcttcattcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atgacaacaatgaaaaattccctattgatgatctttaaacaactacccatcttcattcat 300


Query: 301 ttcacgcaaattgtagacttaaatagcatattccaaacacgaactttttcattc 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttcacgcaaattgtagacttaaatagcatattccaaacacgaactttttcattc 354

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 493,050,577
Number of extensions: 31670725
Number of successful extensions: 2964362
Number of sequences better than 10.0: 407
Length of query: 468
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 445
Effective length of database: 93,106,754,628
Effective search space: 41432505809460
Effective search space used: 41432505809460
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 6.23
Homology vs Protein 
Query= Contig-U06890-1 (Contig-U06890-1Q) /CSM_Contig/Contig-U06890-1Q.Seq.d
         (468 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP007154_532(AP007154|pid:none) Aspergillus oryzae RIB40 genomic...    91   2e-17
CR382131_498(CR382131|pid:none) Yarrowia lipolytica strain CLIB1...    89   5e-17
EF147698_1(EF147698|pid:none) Populus trichocarpa clone WS0124_G...    86   4e-16
EF081759_1(EF081759|pid:none) Picea sitchensis clone WS0285_I11 ...    86   4e-16
(P16577) RecName: Full=Ubiquitin-conjugating enzyme E2-23 kDa;  ...    86   5e-16
BT070458_1(BT070458|pid:none) Picea sitchensis clone WS02730_H10...    85   9e-16
EU958007_1(EU958007|pid:none) Zea mays clone 1640148 ubiquitin-c...    84   2e-15
BT087726_1(BT087726|pid:none) Zea mays full-length cDNA clone ZM...    84   2e-15
EU952258_1(EU952258|pid:none) Zea mays clone 1273319 ubiquitin-c...    84   2e-15
BT035902_1(BT035902|pid:none) Zea mays full-length cDNA clone ZM...    84   2e-15
EF148791_1(EF148791|pid:none) Populus trichocarpa x Populus delt...    84   2e-15
BT036939_1(BT036939|pid:none) Zea mays full-length cDNA clone ZM...    83   3e-15
EU976805_1(EU976805|pid:none) Zea mays clone 990647 ubiquitin-co...    83   3e-15
AM435654_1(AM435654|pid:none) Vitis vinifera contig VV78X069434....    83   3e-15
AE017350_46(AE017350|pid:none) Cryptococcus neoformans var. neof...    82   4e-15
EF677124_1(EF677124|pid:none) Picea sitchensis clone WS02762_E03...    82   6e-15
(P42748) RecName: Full=Ubiquitin-conjugating enzyme E2 4;       ...    82   8e-15
A96663(A96663) hypothetical protein T12P18.18 [imported] - Arabi...    82   8e-15
S43786(S43786;S48898)ubiquitin-protein ligase (EC 6.3.2.19) - Ar...    82   8e-15
S43784(S43784;S48896)ubiquitin-protein ligase (EC 6.3.2.19) - Ar...    82   8e-15
(P42749) RecName: Full=Ubiquitin-conjugating enzyme E2 5;       ...    82   8e-15
AY302138_1(AY302138|pid:none) Homo sapiens ubiquitin-conjugating...    81   1e-14
(P62256) RecName: Full=Ubiquitin-conjugating enzyme E2 H;       ...    80   2e-14
EF147373_1(EF147373|pid:none) Populus trichocarpa clone WS01230_...    79   4e-14
BT079172_1(BT079172|pid:none) Esox lucius clone eluc-evq-532-302...    79   5e-14
AK161414_1(AK161414|pid:none) Mus musculus adult male testis cDN...    79   6e-14
AM910988_190(AM910988|pid:none) Plasmodium knowlesi strain H chr...    77   2e-13
AE014185_327(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    77   2e-13
X71381_1(X71381|pid:none) A.thaliana gene for ubiquitin carrier ...    77   2e-13
AY223399_1(AY223399|pid:none) Schistosoma japonicum clone ZZZ325...    76   4e-13
AY813482_1(AY813482|pid:none) Schistosoma japonicum SJCHGC06296 ...    76   4e-13
FN392321_798(FN392321|pid:none) Pichia pastoris GS115 chromosome...    75   5e-13
AK066993_1(AK066993|pid:none) Oryza sativa Japonica Group cDNA c...    75   5e-13
DQ138710_1(DQ138710|pid:none) Drosophila melanogaster strain Ral...    72   6e-12
AE014298_1163(AE014298|pid:none) Drosophila melanogaster chromos...    72   6e-12
CP000497_219(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    67   2e-10
AL590448_87(AL590448|pid:none) chromosome VIII of strain GB-M1 o...    66   4e-10
AE016818_302(AE016818|pid:none) Ashbya gossypii (= Eremothecium ...    64   2e-09
CU928180_571(CU928180|pid:none) Kluyveromyces thermotolerans str...    64   2e-09
CR382121_465(CR382121|pid:none) Kluyveromyces lactis strain NRRL...    63   4e-09
CR380959_147(CR380959|pid:none) Candida glabrata strain CBS138 c...    62   5e-09
(P28263) RecName: Full=Ubiquitin-conjugating enzyme E2-24 kDa;  ...    62   6e-09
U18530_21(U18530|pid:none) Saccharomyces cerevisiae chromosome V...    62   6e-09
Z29331_1(Z29331|pid:none) H.sapiens (23k/3) mRNA for ubiquitin-c...    61   1e-08
AM989984_46(AM989984|pid:none) Zygosaccharomyces rouxii strain C...    59   4e-08
AM494969_78(AM494969|pid:none) Leishmania braziliensis chromosom...    58   9e-08
AE014297_1490(AE014297|pid:none) Drosophila melanogaster chromos...    50   2e-05
U38786_2(U38786|pid:none) Trichomonas vaginalis calmodulin (CAM)...    45   8e-04
CU640366_482(CU640366|pid:none) Podospora anserina genomic DNA c...    41   0.015
EU244369_1(EU244369|pid:none) Haliotis diversicolor clone HDr4CJ...    39   0.074
FJ411013_1(FJ411013|pid:none) Paecilomyces sp. J18 ubiquitin con...    38   0.13
BT076445_1(BT076445|pid:none) Caligus rogercresseyi clone crog-e...    38   0.13
CP000496_273(CP000496|pid:none) Pichia stipitis CBS 6054 chromos...    37   0.17
DQ144988_1(DQ144988|pid:none) Symbiodinium sp. C3 ubiquitin conj...    37   0.17
AB026055_1(AB026055|pid:none) Nicotiana tabacum Ntubc1 mRNA for ...    36   0.37
BT069408_1(BT069408|pid:none) Zea mays full-length cDNA clone ZM...    36   0.48
EU964992_1(EU964992|pid:none) Zea mays clone 283008 ubiquitin-co...    36   0.48
AL590449_93(AL590449|pid:none) chromosome X of strain GB-M1 of E...    36   0.48
BT036396_1(BT036396|pid:none) Zea mays full-length cDNA clone ZM...    36   0.48
BT034341_1(BT034341|pid:none) Zea mays full-length cDNA clone ZM...    36   0.48
EU964354_1(EU964354|pid:none) Zea mays clone 278181 ubiquitin-co...    36   0.48
(Q553F3) RecName: Full=Ubiquitin-conjugating enzyme E2 2;       ...    35   0.63
AF262934_1(AF262934|pid:none) Avicennia marina ubiquitin conjuga...    35   0.63
FN392322_448(FN392322|pid:none) Pichia pastoris GS115 chromosome...    35   0.63
BC155782_1(BC155782|pid:none) Danio rerio zgc:56340, mRNA (cDNA ...    35   0.63
EU586199_1(EU586199|pid:none) Malus x domestica cultivar Fuji ub...    35   0.82
AB079798_1(AB079798|pid:none) Oryza sativa Japonica Group OsRad6...    35   0.82
EU284823_1(EU284823|pid:none) TSA: Elaeis guineensis EgEfMPOB000...    35   0.82
BT063816_1(BT063816|pid:none) Zea mays full-length cDNA clone ZM...    35   0.82
AY389584_1(AY389584|pid:none) Hyacinthus orientalis ubiquitin-co...    35   0.82
FM992690_44(FM992690|pid:none) Candida dubliniensis CD36 chromos...    35   0.82
AK070524_1(AK070524|pid:none) Oryza sativa Japonica Group cDNA c...    35   0.82
DQ294271_1(DQ294271|pid:none) Solanum tuberosum clone 147C03 ubi...    35   0.82
AK112003_1(AK112003|pid:none) Oryza sativa Japonica Group cDNA c...    35   0.82
AC122726_25(AC122726|pid:none) Medicago truncatula clone mth2-23...    35   1.1
EF083895_1(EF083895|pid:none) Picea sitchensis clone WS0291_D16 ...    35   1.1
AJ843121_1(AJ843121|pid:none) Plantago major mRNA for Ubiquitin-...    34   1.4
CR940352_416(CR940352|pid:none) Theileria annulata strain Ankara...    34   1.4
CP001323_325(CP001323|pid:none) Micromonas sp. RCC299 chromosome...    34   1.4
EF144613_1(EF144613|pid:none) Populus trichocarpa clone WS01111_...    34   1.4
(P51668) RecName: Full=Ubiquitin-conjugating enzyme E2 D1;      ...    34   1.8
AK073821_1(AK073821|pid:none) Oryza sativa Japonica Group cDNA c...    34   1.8
DQ200366_1(DQ200366|pid:none) Solanum tuberosum clone 055E08 ubi...    34   1.8
CU633438_434(CU633438|pid:none) Podospora anserina genomic DNA c...    34   1.8
AX406018_1(AX406018|pid:none) Sequence 433 from Patent WO0222660.      34   1.8
(P46595) RecName: Full=Ubiquitin-conjugating enzyme E2 4;       ...    33   2.4
(P25867) RecName: Full=Ubiquitin-conjugating enzyme E2-17 kDa;  ...    33   2.4
BT057031_1(BT057031|pid:none) Salmo salar clone ssal-evd-502-245...    33   2.4
(Q6IRC7) RecName: Full=NEDD8-conjugating enzyme UBE2F;          ...    33   2.4
(Q5M8Y2) RecName: Full=NEDD8-conjugating enzyme UBE2F;          ...    33   2.4
EU586201_1(EU586201|pid:none) Malus x domestica cultivar Fuji ub...    33   2.4
BC076728_1(BC076728|pid:none) Xenopus laevis ubiquitin-conjugati...    33   2.4
BC047863_1(BC047863|pid:none) Danio rerio zgc:56340, mRNA (cDNA ...    33   2.4
AM448784_1(AM448784|pid:none) Vitis vinifera contig VV78X077229....    33   2.4
BT056835_1(BT056835|pid:none) Salmo salar clone ssal-plnb-027-15...    33   2.4
DQ207855_1(DQ207855|pid:none) Solanum tuberosum clone 078A09 ubi...    33   3.1
EU170471_1(EU170471|pid:none) Eucommia ulmoides ubiquitin conjug...    33   3.1
NRL(1AAK) Ubiquitin conjugating enzyme (EC 6.3.2.19) - Arabidopsis     33   3.1
(P25865) RecName: Full=Ubiquitin-conjugating enzyme E2 1;       ...    33   3.1
BC059548_1(BC059548|pid:none) Danio rerio ubiquitin-conjugating ...    33   3.1
BC048896_1(BC048896|pid:none) Danio rerio zgc:55886, mRNA (cDNA ...    33   3.1
AY489135_1(AY489135|pid:none) Capsicum annuum ubiquitin-conjugat...    33   3.1
BT079155_1(BT079155|pid:none) Esox lucius clone eluc-evq-525-194...    33   3.1
BT075389_1(BT075389|pid:none) Osmerus mordax clone omor-eva-513-...    33   3.1
(Q6C9W0) RecName: Full=NEDD8-conjugating enzyme UBC12;          ...    33   3.1
I59365(I59365) ubiquitin conjugating enzyme - human  &L40146_1(L...    33   3.1
BT070503_1(BT070503|pid:none) Picea sitchensis clone WS02732_O01...    33   4.1
BC142569_1(BC142569|pid:none) Xenopus laevis ubiquitin conjugati...    33   4.1
AC159413_39(AC159413|pid:none) Trypanosoma brucei chromosome 7 c...    33   4.1
EF147515_1(EF147515|pid:none) Populus trichocarpa clone WS0123_B...    33   4.1
CU928180_402(CU928180|pid:none) Kluyveromyces thermotolerans str...    33   4.1
AK007937_1(AK007937|pid:none) Mus musculus 10 day old male pancr...    33   4.1
EF146072_1(EF146072|pid:none) Populus trichocarpa clone WS0115_F...    33   4.1
BT070302_1(BT070302|pid:none) Picea sitchensis clone WS02719_E19...    33   4.1
EF144962_1(EF144962|pid:none) Populus trichocarpa clone WS0111_C...    33   4.1
CR380953_344(CR380953|pid:none) Candida glabrata strain CBS138 c...    33   4.1
EU593895_1(EU593895|pid:none) Brassica napus E2 ubiquitin-conjug...    33   4.1
(Q5U203) RecName: Full=NEDD8-conjugating enzyme UBE2F;          ...    33   4.1
BT071650_1(BT071650|pid:none) Picea sitchensis clone WS0294_N24 ...    33   4.1
BT070291_1(BT070291|pid:none) Picea sitchensis clone WS02718_B23...    33   4.1
BC006057_1(BC006057|pid:none) Mus musculus ubiquitin-conjugating...    33   4.1
(Q9CY34) RecName: Full=NEDD8-conjugating enzyme UBE2F;          ...    33   4.1
(P35133) RecName: Full=Ubiquitin-conjugating enzyme E2 10;      ...    33   4.1
AF325019_1(AF325019|pid:none) Arabidopsis thaliana AT4g27960 (AT...    32   5.3
BT053431_1(BT053431|pid:none) Medicago truncatula clone MTYFP_FQ...    32   5.3
EF145004_1(EF145004|pid:none) Populus trichocarpa clone WS0111_H...    32   5.3
AM427228_1(AM427228|pid:none) Vitis vinifera contig VV78X183533....    32   5.3
EU973859_1(EU973859|pid:none) Zea mays clone 422608 unknown mRNA.      32   5.3
(P43102) RecName: Full=Ubiquitin-conjugating enzyme E2 4;       ...    32   5.3
AP003446_10(AP003446|pid:none) Oryza sativa Japonica Group genom...    32   5.3
(P42746) RecName: Full=Ubiquitin-conjugating enzyme E2 3;       ...    32   5.3
AM111325_1(AM111325|pid:none) Plantago major partial mRNA for ub...    32   5.3
L00641_1(L00641|pid:none) Arabidopsis thaliana ubiquitin conjuga...    32   5.3
AM464235_1(AM464235|pid:none) Vitis vinifera contig VV78X153506....    32   5.3
DQ284472_1(DQ284472|pid:none) Solanum tuberosum clone 116D11 ubi...    32   5.3
AP008207_2909(AP008207|pid:none) Oryza sativa (japonica cultivar...    32   5.3
(Q5ZKX6) RecName: Full=NEDD8-conjugating enzyme UBE2F;          ...    32   5.3
(P35129) RecName: Full=Ubiquitin-conjugating enzyme E2 2;       ...    32   5.3
FM992695_868(FM992695|pid:none) Candida dubliniensis CD36 chromo...    32   5.3
EU853458_1(EU853458|pid:none) Cucumis melo var. cantalupensis ub...    32   5.3
BT046784_1(BT046784|pid:none) Salmo salar clone ssal-eve-547-308...    32   5.3
(P35131) RecName: Full=Ubiquitin-conjugating enzyme E2 8;       ...    32   5.3
BT077825_1(BT077825|pid:none) Lepeophtheirus salmonis clone lsal...    32   5.3
DQ027023_1(DQ027023|pid:none) Arabidopsis thaliana ubiquitinatin...    32   5.3
EU963040_1(EU963040|pid:none) Zea mays clone 256705 ubiquitin-co...    32   5.3
CP001331_21(CP001331|pid:none) Micromonas sp. RCC299 chromosome ...    32   5.3
CR954204_345(CR954204|pid:none) Ostreococcus tauri strain OTTH05...    32   5.3
BT034735_1(BT034735|pid:none) Zea mays full-length cDNA clone ZM...    32   5.3
AK095822_1(AK095822|pid:none) Homo sapiens cDNA FLJ38503 fis, cl...    32   5.3
(P35135) RecName: Full=Ubiquitin-conjugating enzyme E2-17 kDa;  ...    32   5.3
EF576159_1(EF576159|pid:none) Oryza sativa (indica cultivar-grou...    32   5.3
(P35132) RecName: Full=SUMO-conjugating enzyme UBC9;          EC...    32   5.3
(P35134) RecName: Full=Ubiquitin-conjugating enzyme E2 11;      ...    32   5.3
BT057415_1(BT057415|pid:none) Salmo salar clone ssal-eve-568-290...    32   5.3
U15971_1(U15971|pid:none) Oryza sativa ubiquitin conjugating enz...    32   7.0
AM920436_1700(AM920436|pid:none) Penicillium chrysogenum Wiscons...    32   7.0
S61417(S61417;S61418;S72311)ubiquitin-protein ligase (EC 6.3.2.1...    32   7.0
AY048267_1(AY048267|pid:none) Arabidopsis thaliana AT5g62540/K19...    32   7.0
BT075900_1(BT075900|pid:none) Caligus rogercresseyi clone crog-e...    32   7.0
AY389716_1(AY389716|pid:none) Hyacinthus orientalis ubiquitin-co...    32   7.0
FN392319_1108(FN392319|pid:none) Pichia pastoris GS115 chromosom...    32   7.0
EU284954_1(EU284954|pid:none) TSA: Elaeis guineensis EgEfMPOB001...    32   7.0
DQ056143_3(DQ056143|pid:none) Coprinellus disseminatus strain C3...    32   7.0
BT075934_1(BT075934|pid:none) Caligus rogercresseyi clone crog-e...    32   7.0
(Q3UWQ3) RecName: Full=NEDD8-conjugating enzyme UBE2F-B;        ...    32   7.0
CU638744_764(CU638744|pid:none) Podospora anserina genomic DNA c...    32   7.0
BC055599_1(BC055599|pid:none) Danio rerio zgc:66323, mRNA (cDNA ...    32   7.0
AC007764_2(AC007764|pid:none) Genomic sequence for Arabidopsis t...    32   7.0
(P52490) RecName: Full=Ubiquitin-conjugating enzyme E2 13;      ...    32   7.0
DQ120718_1(DQ120718|pid:none) Homo sapiens rcUBE2S gene, partial...    32   7.0
(Q94F47) RecName: Full=Ubiquitin carrier protein E2 28;         ...    32   7.0
AB074412_1(AB074412|pid:none) Oryza sativa Japonica Group mRNA f...    32   7.0
AF034946_1(AF034946|pid:none) Zea mays ubiquitin conjugating enz...    32   7.0
AY736121_1(AY736121|pid:none) Triticum aestivum ubiquitin-conjug...    32   7.0
AB105547_1(AB105547|pid:none) Xenopus laevis Xubc14 mRNA for ubi...    32   7.0
EU586200_1(EU586200|pid:none) Malus x domestica cultivar Fuji ub...    32   7.0
EU960465_1(EU960465|pid:none) Zea mays clone 225114 ubiquitin-co...    32   9.1
DQ228115_1(DQ228115|pid:none) Proteomonas sulcata strain CCMP704...    32   9.1
AK290063_1(AK290063|pid:none) Homo sapiens cDNA FLJ76590 complet...    32   9.1
CU928175_205(CU928175|pid:none) Zygosaccharomyces rouxii strain ...    32   9.1
AY220735_1(AY220735|pid:none) Hordeum vulgare ubiquitin-conjugat...    32   9.1
(Q6FR76) RecName: Full=Ubiquitin-conjugating enzyme E2 2;       ...    32   9.1
AJ843120_1(AJ843120|pid:none) Plantago major mRNA for Ubiquitin-...    32   9.1
(Q9C9Y7) RecName: Full=Probable ubiquitin-conjugating enzyme E2 ...    32   9.1
CU928180_286(CU928180|pid:none) Kluyveromyces thermotolerans str...    32   9.1
CR382128_908(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...    32   9.1
AY082009_1(AY082009|pid:none) Gossypium thurberi ubiquitin-conju...    32   9.1
BT078072_1(BT078072|pid:none) Lepeophtheirus salmonis clone lsal...    32   9.1
GM966539_1(GM966539|pid:none) Sequence 1871 from Patent WO200814...    32   9.1
DQ228113_4(DQ228113|pid:none) Hanusia phi strain CCMP325 18S rib...    32   9.1
AK297502_1(AK297502|pid:none) Homo sapiens cDNA FLJ60703 complet...    32   9.1
CP001328_686(CP001328|pid:none) Micromonas sp. RCC299 chromosome...    32   9.1
(P15732) RecName: Full=Ubiquitin-conjugating enzyme E2-16 kDa;  ...    32   9.1
AC148404_22(AC148404|pid:none) Medicago truncatula clone mth2-28...    32   9.1

>AP007154_532(AP007154|pid:none) Aspergillus oryzae RIB40 genomic
           DNA, SC001.
          Length = 187

 Score = 90.5 bits (223), Expect = 2e-17
 Identities = 39/53 (73%), Positives = 49/53 (92%)
 Frame = +3

Query: 3   PMFDLINIFEIFLPQLLLYPNPTDPLNGEAASMLLKEPEKYKIKVKEFVNKYA 161
           PM+D+INIFE+FLPQLL YPNP+DPLNGEAA+ML++EP+ Y+ KVKE+V KYA
Sbjct: 97  PMYDMINIFEVFLPQLLRYPNPSDPLNGEAAAMLMREPKSYEAKVKEYVAKYA 149

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 535,199,580
Number of extensions: 8084086
Number of successful extensions: 18411
Number of sequences better than 10.0: 194
Number of HSP's gapped: 18321
Number of HSP's successfully gapped: 195
Length of query: 156
Length of database: 1,040,966,779
Length adjustment: 117
Effective length of query: 39
Effective length of database: 666,065,434
Effective search space: 25976551926
Effective search space used: 25976551926
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)
PSORT 

 psg: 0.75  gvh: 0.48  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U06890-1 is cyt
VS (DIR, S) 2
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0