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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U06873-1
Contig ID Contig-U06873-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U06873-1 (Contig-U06873-1Q) /CSM_Contig/Contig-U06873-1Q.Seq.d
TTAGAGAATTAACACAAGCTGAAATGCCAAATTTTGATGCATCCATTCCA
AAATACGTTTTATTAGCACAACAAAAGATAGCCAAATTTAATGAAACCGC
TGAAAATACTATTAATATATATATGGCATTGGTTAGATTAGAAAAATCAA
AAACAGACCTTTTAATTACCTTTAATGAAGCTATTGCATTAGCACCAACA
AGTAGCAGTGTGGCGGTCGTTCAAAATTTAACACCATCAAATGATCAATC
AAAATCTGAACAATTATTTTTAACAATGTTAAAATCATTCAAAATTAAAG
ATTATTCTTTATTCGTACATAATTAATAAACATTAAAGAAGTACATACCA
CACAGACACACAATTAACACAATTAACACCTTCAAATAATAATAATAATA
ATAATAATAAATACACATTCATATCATACTACAATAAAGTACACAT
Gap no gap
Contig length 446
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 3751578
End point 3751132
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U06873
List of clone(s) 

est1=VSH448Z,1,447
Translated Amino Acid sequence 
RELTQAEMPNFDASIPKYVLLAQQKIAKFNETAENTINIYMALVRLEKSKTDLLITFNEA
IALAPTSSSVAVVQNLTPSNDQSKSEQLFLTMLKSFKIKDYSLFVHN**tlkkyiphrht
intintfk********ihihiilq*sth
Translated Amino Acid sequence (All Frames) 
Frame A:
len*hklkcqilmhpfqntfy*hnkr*pnlmkplkilliyiwhwld*knqkqtf*lplmk
llh*hqqvavwrsfki*hhqminqnlnnyf*qc*nhsklkiilysyiinkh*rstyhtdt
qltqltpsnnnnnnnnkytfisyynkvh


Frame B:
*rints*nakf*cihskirfisttkdsqi**nr*kyy*yiygig*irkiknrpfnyl**s
ycistnk*qcggrskfntik*siki*tiifnnvkiiqn*rlffirt*linikevhttqth
n*hn*hlqiiiiiiiinthsyhttikyt


Frame C:
RELTQAEMPNFDASIPKYVLLAQQKIAKFNETAENTINIYMALVRLEKSKTDLLITFNEA
IALAPTSSSVAVVQNLTPSNDQSKSEQLFLTMLKSFKIKDYSLFVHN**tlkkyiphrht
intintfk********ihihiilq*sth
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06873-1 (Contig-U06873-1Q)
/CSM_Contig/Contig-U06873-1Q.Seq.d
         (446 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06873-1 (Contig-U06873-1Q) /CSM_Contig/Conti...   761  0.0
Contig-U01691-1 (Contig-U01691-1Q) /CSM_Contig/Conti...    36  0.031
Contig-U11680-1 (Contig-U11680-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U11245-1 (Contig-U11245-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U09342-1 (Contig-U09342-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U14773-1 (Contig-U14773-1Q) /CSM_Contig/Conti...    32  0.48
Contig-U14756-1 (Contig-U14756-1Q) /CSM_Contig/Conti...    32  0.48
Contig-U14068-1 (Contig-U14068-1Q) /CSM_Contig/Conti...    32  0.48
Contig-U13128-1 (Contig-U13128-1Q) /CSM_Contig/Conti...    32  0.48

>Contig-U06873-1 (Contig-U06873-1Q) /CSM_Contig/Contig-U06873-1Q.Seq.d
          Length = 446

 Score =  761 bits (384), Expect = 0.0
 Identities = 384/384 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagagaattaacacaagctgaaatgccaaattttgatgcatccattccaaaatacgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ttagagaattaacacaagctgaaatgccaaattttgatgcatccattccaaaatacgttt 60

                                                                       
Query: 61  tattagcacaacaaaagatagccaaatttaatgaaaccgctgaaaatactattaatatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tattagcacaacaaaagatagccaaatttaatgaaaccgctgaaaatactattaatatat 120

                                                                       
Query: 121 atatggcattggttagattagaaaaatcaaaaacagaccttttaattacctttaatgaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atatggcattggttagattagaaaaatcaaaaacagaccttttaattacctttaatgaag 180

                                                                       
Query: 181 ctattgcattagcaccaacaagtagcagtgtggcggtcgttcaaaatttaacaccatcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctattgcattagcaccaacaagtagcagtgtggcggtcgttcaaaatttaacaccatcaa 240

                                                                       
Query: 241 atgatcaatcaaaatctgaacaattatttttaacaatgttaaaatcattcaaaattaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atgatcaatcaaaatctgaacaattatttttaacaatgttaaaatcattcaaaattaaag 300

                                                                       
Query: 301 attattctttattcgtacataattaataaacattaaagaagtacataccacacagacaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 attattctttattcgtacataattaataaacattaaagaagtacataccacacagacaca 360

                                   
Query: 361 caattaacacaattaacaccttca 384
           ||||||||||||||||||||||||
Sbjct: 361 caattaacacaattaacaccttca 384


 Score = 65.9 bits (33), Expect = 3e-11
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 414 cacattcatatcatactacaataaagtacacat 446
           |||||||||||||||||||||||||||||||||
Sbjct: 414 cacattcatatcatactacaataaagtacacat 446


>Contig-U01691-1 (Contig-U01691-1Q) /CSM_Contig/Contig-U01691-1Q.Seq.d
          Length = 225

 Score = 36.2 bits (18), Expect = 0.031
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 135 agattagaaaaatcaaaa 152
           ||||||||||||||||||
Sbjct: 194 agattagaaaaatcaaaa 177


>Contig-U11680-1 (Contig-U11680-1Q) /CSM_Contig/Contig-U11680-1Q.Seq.d
          Length = 3172

 Score = 34.2 bits (17), Expect = 0.12
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                 
Query: 250  caaaatctgaacaattatttt 270
            |||||||||||||| ||||||
Sbjct: 1992 caaaatctgaacaagtatttt 1972


 Score = 28.2 bits (14), Expect = 7.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 263 attatttttaacaa 276
           ||||||||||||||
Sbjct: 928 attatttttaacaa 941


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7179
Number of Sequences: 6905
Number of extensions: 7179
Number of successful extensions: 772
Number of sequences better than 10.0: 235
length of query: 446
length of database: 5,674,871
effective HSP length: 16
effective length of query: 430
effective length of database: 5,564,391
effective search space: 2392688130
effective search space used: 2392688130
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11.10
Homology vs DNA 
Query= Contig-U06873-1 (Contig-U06873-1Q) /CSM_Contig/Contig-U06873-1Q.Seq.d
         (446 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU267465) Dictyostelium discoideum vegetative cDNA clone:VS...   761   0.0    2
(CR396586) Zebrafish DNA sequence from clone DKEY-184A18 in ...    44   0.012  6
(CR352283) Zebrafish DNA sequence from clone CH211-105M14 in...    42   0.046  3
(AM448802) Vitis vinifera, whole genome shotgun sequence, co...    44   0.15   3
(BX511197) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   0.24   6
(AC114530) Rattus norvegicus clone CH230-57A9, *** SEQUENCIN...    48   0.27   1
(AC095704) Rattus norvegicus clone CH230-9B23, WORKING DRAFT...    48   0.27   1
(AL954725) Zebrafish DNA sequence from clone DKEY-11H11 in l...    40   0.33   6
(CT025864) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   0.84   4
(AE001372) Plasmodium falciparum 3D7 chromosome 2 section 9 ...    32   1.0    4
(CR749747) Zebrafish DNA sequence from clone CH211-237I8 in ...    46   1.1    1
(BX927146) Zebrafish DNA sequence from clone DKEY-277I15 in ...    46   1.1    1
(CU861928) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.1    1
(CU468108) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.1    1
(CZ591312) OA_BBa0189P06.f OA_BBa Oryza alta genomic clone O...    46   1.1    1
(BX897735) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    40   1.1    7
(BX248504) Zebrafish DNA sequence from clone CH211-72K22 in ...    34   1.1    5
(FI073744) CHO_OF7332xh01f1.ab1 CHO_OF7 Nicotiana tabacum ge...    40   1.6    2
(CZ533461) SRAA-aac85c07.b1 Strongyloides ratti whole genome...    34   1.7    2
(AL845440) Mouse DNA sequence from clone RP23-294B7 on chrom...    34   2.1    2
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    36   2.2    6
(AC176006) Strongylocentrotus purpuratus clone R3-3028E15, W...    44   2.3    3
(CU695222) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   2.5    3
(AP007383) Lotus japonicus genomic DNA, chromosome 4, clone:...    38   2.6    3
(CR626878) Zebrafish DNA sequence from clone DKEY-196H17 in ...    38   2.7    4
(AL772398) Mouse DNA sequence from clone RP23-173J23 on chro...    40   2.7    3
(AC166975) Mus musculus chromosome 5 clone RP23-455G10 map 5...    42   2.8    3
(AC145592) Mus musculus BAC clone RP24-335F16 from chromosom...    42   2.9    5
(AC166776) Mus musculus chromosome 5, clone RP23-24K16, comp...    42   3.1    3
(CR931999) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   3.1    6
(AL844870) Zebrafish DNA sequence from clone BUSM1-169I8 in ...    36   3.2    4
(CR759952) Zebrafish DNA sequence from clone CH211-168O24 in...    40   3.2    2
(BX901936) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   3.3    4
(CR318647) Zebrafish DNA sequence from clone CH211-159M16 in...    36   3.3    5
(AC004688) Plasmodium falciparum chromosome 12 clone 3D7, **...    32   3.4    6
(CU467666) Pig DNA sequence from clone CH242-127H16 on chrom...    42   3.4    5
(AC133303) Rattus norvegicus clone CH230-146K20, *** SEQUENC...    38   3.8    4
(AC148657) Medicago truncatula chromosome 2 clone mth2-61k17...    36   4.0    3
(CU104776) Zebrafish DNA sequence from clone CH211-181O15 in...    44   4.2    1
(CR536613) Zebrafish DNA sequence from clone DKEY-88L16 in l...    44   4.2    1
(AC217637) Populus trichocarpa clone Pop1-98P16, complete se...    44   4.2    1
(AC182705) Populus trichocarpa clone Pop1-79A19, complete se...    44   4.2    1
(CS742865) Sequence 10861 from Patent WO2005083127.                44   4.2    1
(CS741845) Sequence 9841 from Patent WO2005083127.                 44   4.2    1
(AF281074) Homo sapiens neuropilin 2 (NRP2) gene, complete c...    44   4.2    1
(AC016256) Homo sapiens 12 BAC RP11-98E6 (Roswell Park Cance...    44   4.2    1
(AC007362) Homo sapiens BAC clone RP11-150F11 from 2, comple...    44   4.2    1
(AC159867) Bos taurus clone CH240-71K2, WORKING DRAFT SEQUEN...    44   4.2    1
(CU856602) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   4.2    1
(AC180746) Strongylocentrotus purpuratus clone R3-3083C7, WO...    44   4.2    1
(AC172339) Bos taurus clone CH240-264E17, WORKING DRAFT SEQU...    44   4.2    1
(ET724137) CHO_OF133xb05f1.ab1 CHO_OF Nicotiana tabacum geno...    44   4.2    1
(ER610028) 1093016303055 Global-Ocean-Sampling_GS-36-01-01-2...    44   4.2    1
(ER516797) 1093015522267 Global-Ocean-Sampling_GS-35-01-01-1...    44   4.2    1
(ER308404) 1092343772701 Global-Ocean-Sampling_GS-34-01-01-1...    44   4.2    1
(EK303666) 1095462373199 Global-Ocean-Sampling_GS-31-01-01-1...    44   4.2    1
(EK292046) 1095462333830 Global-Ocean-Sampling_GS-31-01-01-1...    44   4.2    1
(EJ922128) 1093018649555 Global-Ocean-Sampling_GS-30-02-01-1...    44   4.2    1
(EJ877155) 1093018376700 Global-Ocean-Sampling_GS-30-02-01-1...    44   4.2    1
(EJ836079) 1093017634793 Global-Ocean-Sampling_GS-30-02-01-1...    44   4.2    1
(EJ834833) 1093017611868 Global-Ocean-Sampling_GS-30-02-01-1...    44   4.2    1
(EJ490032) 1095403531134 Global-Ocean-Sampling_GS-28-01-01-1...    44   4.2    1
(EJ480792) 1095403467344 Global-Ocean-Sampling_GS-28-01-01-1...    44   4.2    1
(EJ454976) 1093017376981 Global-Ocean-Sampling_GS-28-01-01-1...    44   4.2    1
(EJ427594) 1093015235497 Global-Ocean-Sampling_GS-28-01-01-1...    44   4.2    1
(EJ391462) 1092963939207 Global-Ocean-Sampling_GS-28-01-01-1...    44   4.2    1
(EJ377195) 1092963746612 Global-Ocean-Sampling_GS-28-01-01-1...    44   4.2    1
(EJ369216) 1092963717210 Global-Ocean-Sampling_GS-28-01-01-1...    44   4.2    1
(EJ329310) 1092963422219 Global-Ocean-Sampling_GS-28-01-01-1...    44   4.2    1
(EJ322006) 1095403397709 Global-Ocean-Sampling_GS-27-01-01-1...    44   4.2    1
(EJ287935) 1095370001298 Global-Ocean-Sampling_GS-27-01-01-1...    44   4.2    1
(EJ275703) 1095366019719 Global-Ocean-Sampling_GS-27-01-01-1...    44   4.2    1
(EJ265932) 1095351010357 Global-Ocean-Sampling_GS-27-01-01-1...    44   4.2    1
(EJ257902) 1095349020905 Global-Ocean-Sampling_GS-27-01-01-1...    44   4.2    1
(EJ231595) 1092402624570 Global-Ocean-Sampling_GS-27-01-01-1...    44   4.2    1
(EJ230934) 1092402597501 Global-Ocean-Sampling_GS-27-01-01-1...    44   4.2    1
(EJ228403) 1092402536479 Global-Ocean-Sampling_GS-27-01-01-1...    44   4.2    1
(EJ219131) 1092351182477 Global-Ocean-Sampling_GS-27-01-01-1...    44   4.2    1
(EJ216373) 1092351111408 Global-Ocean-Sampling_GS-27-01-01-1...    44   4.2    1
(EJ155556) 1092344027937 Global-Ocean-Sampling_GS-27-01-01-1...    44   4.2    1
(EJ138449) 1092343630619 Global-Ocean-Sampling_GS-27-01-01-1...    44   4.2    1
(EJ043318) 1095454103304 Global-Ocean-Sampling_GS-26-01-01-1...    44   4.2    1
(EL604190) He_pwd_0163D12_M13R Heliconius erato pooled wing ...    44   4.2    1
(EL602821) He_pwd_0130D03_M13R Heliconius erato pooled wing ...    44   4.2    1
(EL601832) He_pwd_0230H09_M13R Heliconius erato pooled wing ...    44   4.2    1
(EL600825) He_pwd_0130B01_M13R Heliconius erato pooled wing ...    44   4.2    1
(EL600186) He_pwd_0156E09_M13R Heliconius erato pooled wing ...    44   4.2    1
(EL597049) He_pwd_0212D05_M13R Heliconius erato pooled wing ...    44   4.2    1
(EG592026) SA044F silkglands of fifth instar larvae library ...    44   4.2    1
(EB827183) 1087364 KZ03 Plodia interpunctella cDNA clone 553...    44   4.2    1
(EB826565) 1088175 KZ01 Plodia interpunctella cDNA clone 557...    44   4.2    1
(EB826171) 1086727 KZ01 Plodia interpunctella cDNA clone 556...    44   4.2    1
(EB826151) 1086330 KZ01 Plodia interpunctella cDNA clone 552...    44   4.2    1
(EB825462) 1082986 KZ01 Plodia interpunctella cDNA clone 552...    44   4.2    1
(EB825018) 1082914 KZ01 Plodia interpunctella cDNA clone 552...    44   4.2    1
(EB823480) 1092911 CC04 Plodia interpunctella cDNA clone 570...    44   4.2    1
(DY074963) 000405BTNA003833HT BTNA Bos taurus cDNA 5', mRNA ...    44   4.2    1
(DT662894) He_wd2a1_79D10_M13R Heliconius erato wing disk 2 ...    44   4.2    1
(CV264615) WS02025.B21_A02 PTxN-IB-N-A-11 Populus trichocarp...    44   4.2    1
(CO115088) GR__Eb016J21.r GR__Eb Gossypium raimondii cDNA cl...    44   4.2    1

>(AU267465) Dictyostelium discoideum vegetative cDNA clone:VSH448,
           3' end single read.
          Length = 447

 Score =  761 bits (384), Expect(2) = 0.0
 Identities = 384/384 (100%)
 Strand = Plus / Plus


Query: 1   ttagagaattaacacaagctgaaatgccaaattttgatgcatccattccaaaatacgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ttagagaattaacacaagctgaaatgccaaattttgatgcatccattccaaaatacgttt 60


Query: 61  tattagcacaacaaaagatagccaaatttaatgaaaccgctgaaaatactattaatatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tattagcacaacaaaagatagccaaatttaatgaaaccgctgaaaatactattaatatat 120


Query: 121 atatggcattggttagattagaaaaatcaaaaacagaccttttaattacctttaatgaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atatggcattggttagattagaaaaatcaaaaacagaccttttaattacctttaatgaag 180


Query: 181 ctattgcattagcaccaacaagtagcagtgtggcggtcgttcaaaatttaacaccatcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctattgcattagcaccaacaagtagcagtgtggcggtcgttcaaaatttaacaccatcaa 240


Query: 241 atgatcaatcaaaatctgaacaattatttttaacaatgttaaaatcattcaaaattaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atgatcaatcaaaatctgaacaattatttttaacaatgttaaaatcattcaaaattaaag 300


Query: 301 attattctttattcgtacataattaataaacattaaagaagtacataccacacagacaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 attattctttattcgtacataattaataaacattaaagaagtacataccacacagacaca 360


Query: 361 caattaacacaattaacaccttca 384
           ||||||||||||||||||||||||
Sbjct: 361 caattaacacaattaacaccttca 384

 Score = 65.9 bits (33), Expect(2) = 0.0
 Identities = 33/33 (100%)
 Strand = Plus / Plus


Query: 414 cacattcatatcatactacaataaagtacacat 446
           |||||||||||||||||||||||||||||||||
Sbjct: 414 cacattcatatcatactacaataaagtacacat 446

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 589,865,646
Number of extensions: 37351009
Number of successful extensions: 3377177
Number of sequences better than 10.0: 148
Length of query: 446
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 423
Effective length of database: 93,106,754,628
Effective search space: 39384157207644
Effective search space used: 39384157207644
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 6.23
Homology vs Protein 
Query= Contig-U06873-1 (Contig-U06873-1Q) /CSM_Contig/Contig-U06873-1Q.Seq.d
         (446 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54ML6) RecName: Full=Probable ran guanine nucleotide release f...   206   2e-52
AJ278788_1(AJ278788|pid:none) Xenopus laevis mRNA for mog1 prote...    66   3e-10
BC086495_1(BC086495|pid:none) Xenopus tropicalis RAN guanine nuc...    62   8e-09
BX276102_1(BX276102|pid:none) Zebrafish DNA sequence from clone ...    57   2e-07
BC150378_1(BC150378|pid:none) Danio rerio si:ch211-268m12.6, mRN...    57   2e-07
EF145300_1(EF145300|pid:none) Populus trichocarpa clone WS01122_...    47   3e-04
(Q9HD47) RecName: Full=Ran guanine nucleotide release factor;   ...    44   0.002
AF161514_1(AF161514|pid:none) Homo sapiens HSPC165 mRNA, complet...    44   0.002
AF151070_1(AF151070|pid:none) Homo sapiens HSPC236 mRNA, complet...    44   0.002
BT035171_1(BT035171|pid:none) Zea mays full-length cDNA clone ZM...    42   0.005
AY037246_1(AY037246|pid:none) Arabidopsis thaliana At1g69680/T6C...    42   0.007
EU967014_1(EU967014|pid:none) Zea mays clone 298845 RAN guanine ...    42   0.007
CP001329_67(CP001329|pid:none) Micromonas sp. RCC299 chromosome ...    41   0.011
AL844509_449(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    41   0.011
(Q32PE2) RecName: Full=Ran guanine nucleotide release factor;   ...    41   0.011
AK010288_1(AK010288|pid:none) Mus musculus ES cells cDNA, RIKEN ...    40   0.033
EU008745_1(EU008745|pid:none) Stachybotrys elegans clone Se5977 ...    39   0.074
CR382127_672(CR382127|pid:none) Yarrowia lipolytica strain CLIB1...    37   0.28
AC013289_12(AC013289|pid:none) Arabidopsis thaliana chromosome 1...    37   0.28
AY434723_1(AY434723|pid:none) Taenia solium mog1-like protein mR...    37   0.28
U97171_1(U97171|pid:none) HIV-1 strain ESP1 from Spain, reverse ...    36   0.37
CU633865_96(CU633865|pid:none) Podospora anserina genomic DNA ch...    35   0.82
CR382122_593(CR382122|pid:none) Kluyveromyces lactis strain NRRL...    33   2.4
AJ575148_1(AJ575148|pid:none) Sordaria macrospora partial smu687...    33   3.1
EU192014_1(EU192014|pid:none) Canine distemper virus strain TW-K...    32   5.3
EU192015_1(EU192015|pid:none) Canine distemper virus strain TW-K...    32   5.3
EU192021_1(EU192021|pid:none) Canine distemper virus strain TW-K...    32   5.3
CP000246_2476(CP000246|pid:none) Clostridium perfringens ATCC 13...    32   5.3
EU192020_1(EU192020|pid:none) Canine distemper virus strain TW-K...    32   5.3
EU192023_1(EU192023|pid:none) Canine distemper virus strain TW-K...    32   5.3
EU192013_1(EU192013|pid:none) Canine distemper virus strain TW-K...    32   7.0
AL627362_18(AL627362|pid:none) DNA centromeric region sequence f...    32   7.0
FN357297_8(FN357297|pid:none) Schistosoma mansoni genome sequenc...    32   7.0
EU637854_1(EU637854|pid:none) Infectious bronchitis virus strain...    32   7.0
EU637854_2(EU637854|pid:none) Infectious bronchitis virus strain...    32   7.0
AF250284_16(AF250284|pid:none) Amsacta moorei entomopoxvirus, co...    32   9.1

>(Q54ML6) RecName: Full=Probable ran guanine nucleotide release
           factor;          Short=RanGNRF;
          Length = 195

 Score =  206 bits (524), Expect = 2e-52
 Identities = 107/107 (100%), Positives = 107/107 (100%)
 Frame = +3

Query: 3   RELTQAEMPNFDASIPKYVLLAQQKIAKFNETAENTINIYMALVRLEKSKTDLLITFNEA 182
           RELTQAEMPNFDASIPKYVLLAQQKIAKFNETAENTINIYMALVRLEKSKTDLLITFNEA
Sbjct: 89  RELTQAEMPNFDASIPKYVLLAQQKIAKFNETAENTINIYMALVRLEKSKTDLLITFNEA 148

Query: 183 IALAPTSSSVAVVQNLTPSNDQSKSEQLFLTMLKSFKIKDYSLFVHN 323
           IALAPTSSSVAVVQNLTPSNDQSKSEQLFLTMLKSFKIKDYSLFVHN
Sbjct: 149 IALAPTSSSVAVVQNLTPSNDQSKSEQLFLTMLKSFKIKDYSLFVHN 195

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 583,463,767
Number of extensions: 9578810
Number of successful extensions: 20993
Number of sequences better than 10.0: 36
Number of HSP's gapped: 20982
Number of HSP's successfully gapped: 36
Length of query: 148
Length of database: 1,040,966,779
Length adjustment: 110
Effective length of query: 38
Effective length of database: 688,495,429
Effective search space: 26162826302
Effective search space used: 26162826302
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)
PSORT 

 psg: 0.75  gvh: 0.33  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for Contig-U06873-1 is cyt
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0