Contig-U06838-1 |
Contig ID |
Contig-U06838-1 |
Contig update |
2001. 8.30 |
Contig sequence |
|
Gap |
no gap |
Contig length |
485 |
Chromosome number (1..6, M) |
6 |
Chromosome length |
3595308 |
Start point |
1929388 |
End point |
1928903 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
1 |
Number of EST |
2 |
Link to clone list |
U06838 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.10 |
Homology vs DNA |
Query= Contig-U06838-1 (Contig-U06838-1Q) /CSM_Contig/Contig-U06838-1Q.Seq.d (485 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU266987) Dictyostelium discoideum vegetative cDNA clone:VS... 844 0.0 1 (AU266988) Dictyostelium discoideum vegetative cDNA clone:VS... 837 0.0 1 (CN567368) tag08a10.y1 Hydra EST -Kiel 1 Hydra magnipapillat... 76 1e-09 1 (CN567097) tag08a10.x1 Hydra EST -Kiel 1 Hydra magnipapillat... 76 1e-09 1 (FC728365) CBBG4724.fwd CBBG Lottia gigantea 12,15,18h embry... 68 3e-07 1 (FC692782) CAXX3428.fwd CAXX Lottia gigantea from male gonad... 68 3e-07 1 (FC689506) CAXX2070.fwd CAXX Lottia gigantea from male gonad... 68 3e-07 1 (FC636398) CAXU1512.fwd CAXU Lottia gigantea from female gon... 68 3e-07 1 (FC592603) CAXP7117.fwd CAXP Lottia gigantea from head, foot... 68 3e-07 1 (FC574604) CAXP11206.fwd CAXP Lottia gigantea from head, foo... 68 3e-07 1 (FC561460) CAWF3876.fwd CAWF Lottia gigantea from mantle (H)... 68 3e-07 1 (AU083857) Cryptomeria japonica mRNA, clone:CC0584, 5' end, ... 58 5e-07 2 (BY897528) Cryptomeria japonica cDNA clone: CMFL003_E04, 3'e... 58 3e-04 1 (CP000716) Thermosipho melanesiensis BI429, complete genome. 42 0.009 15 (DN571737) 90163068 Sea Urchin primary mesenchyme cell cDNA ... 52 0.019 1 (BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 36 0.041 13 (AP004586) Oryza sativa Japonica Group genomic DNA, chromoso... 50 0.051 4 (AP004653) Oryza sativa Japonica Group genomic DNA, chromoso... 50 0.053 3 (BX000510) Oryza sativa chromosome 12, . BAC OJ1769_D07 of l... 50 0.074 1 (AP008218) Oryza sativa (japonica cultivar-group) genomic DN... 50 0.074 1 (AP008215) Oryza sativa (japonica cultivar-group) genomic DN... 50 0.074 1 (AP008214) Oryza sativa (japonica cultivar-group) genomic DN... 50 0.074 1 (AP008207) Oryza sativa (japonica cultivar-group) genomic DN... 50 0.074 1 (AP005568) Oryza sativa Japonica Group genomic DNA, chromoso... 50 0.074 1 (AP005483) Oryza sativa Japonica Group genomic DNA, chromoso... 50 0.074 1 (AP003442) Oryza sativa Japonica Group genomic DNA, chromoso... 50 0.074 1 (EA730548) Sequence 109427 from patent US 7365185. 50 0.074 1 (EA703408) Sequence 82287 from patent US 7365185. 50 0.074 1 (EA693250) Sequence 72129 from patent US 7365185. 50 0.074 1 (EA691877) Sequence 70756 from patent US 7365185. 50 0.074 1 (EA687545) Sequence 66424 from patent US 7365185. 50 0.074 1 (AP003870) Oryza sativa Japonica Group genomic DNA, chromoso... 50 0.074 1 (CT582329) Pinus pinaster bud EST. 50 0.074 1 (EX291354) 1579226_5_I08_024 PY06 Carica papaya cDNA, mRNA s... 50 0.074 1 (EX291118) 1579235_5_I17_071 PY06 Carica papaya cDNA, mRNA s... 50 0.074 1 (EX282118) 1569058_5_A16_064 PY06 Carica papaya cDNA, mRNA s... 50 0.074 1 (EX277520) 1564056_5_A06_031 PY06 Carica papaya cDNA, mRNA s... 50 0.074 1 (EX277120) 1563828_5_G18_073 PY06 Carica papaya cDNA, mRNA s... 50 0.074 1 (EX265708) 1446093_5_B03_016 PY06 Carica papaya cDNA, mRNA s... 50 0.074 1 (CB033034) EFCP023G09 flower bud Lambda ZapII cDNA Library P... 46 0.077 2 (ES874685) WS02926.CR_L22 SS-IB-A-FL-15 Picea sitchensis cDN... 48 0.29 1 (ES245945) WS0363.C21_M20 SS-B-N-21 Picea sitchensis cDNA cl... 48 0.29 1 (DY585043) C004-A4 Acropora millepora presettlement library ... 48 0.29 1 (DR584253) WS0335.C21_P05 WS-SE-N-A-18 Picea glauca cDNA clo... 48 0.29 1 (DR567150) WS02618.BR_B01 WS-PP-N-A-12 Picea glauca cDNA clo... 48 0.29 1 (DR559879) WS02618.C21.1_B01 WS-PP-N-A-12 Picea glauca cDNA ... 48 0.29 1 (DR466701) WS00939.B21_B16 IS-B-N-A-10 Picea engelmannii x P... 48 0.29 1 (DR465724) WS00936.B21_F15 IS-B-N-A-10 Picea engelmannii x P... 48 0.29 1 (CT749255) Paramecium tetraurelia 5-PRIME EST from clone LK0... 48 0.29 1 (EX442763) GQ04106.B7_H12 GQ041 - Shoot tip - Dormant (Norma... 48 0.29 1 (EX436176) GQ04001.B7_N16 GQ040 - Shoot tip - Active growth ... 48 0.29 1 (EX420043) GQ03714.B7_N20 GQ037 - Shoot tip - Dormant Picea ... 48 0.29 1 (EX408603) GQ03602.B7_N03 GQ036 - Shoot tip - Active growth ... 48 0.29 1 (EX384069) GQ03306.SP6_P15 GQ033 - Terminal leader (Normaliz... 48 0.29 1 (EX383704) GQ03306.B7_P15 GQ033 - Terminal leader (Normalize... 48 0.29 1 (EX381543) GQ03303.SP6_A03 GQ033 - Terminal leader (Normaliz... 48 0.29 1 (EX381193) GQ03303.B7_A03 GQ033 - Terminal leader (Normalize... 48 0.29 1 (EX365306) GQ03209.SP6_G19 GQ032 - Shoot tip (Normalized lib... 48 0.29 1 (EX364945) GQ03209.B7_G19 GQ032 - Shoot tip (Normalized libr... 48 0.29 1 (EX356947) GQ03121.B7_G05 GQ031 - Xylem Scrapings (Normalize... 48 0.29 1 (EX354795) GQ03115.B7_I18 GQ031 - Xylem Scrapings (Normalize... 48 0.29 1 (EX350544) GQ03108.SP6_N01 GQ031 - Xylem Scrapings (Normaliz... 48 0.29 1 (EX350182) GQ03108.B7_N01 GQ031 - Xylem Scrapings (Normalize... 48 0.29 1 (EX349818) GQ03107.SP6_N02 GQ031 - Xylem Scrapings (Normaliz... 48 0.29 1 (EX349450) GQ03107.B7_N02 GQ031 - Xylem Scrapings (Normalize... 48 0.29 1 (EX349135) GQ03106.SP6_P15 GQ031 - Xylem Scrapings (Normaliz... 48 0.29 1 (EX348773) GQ03106.B7_P15 GQ031 - Xylem Scrapings (Normalize... 48 0.29 1 (EX332748) GQ02904.SP6_M18 GQ029 - Xylem scrapings - AT NITE... 48 0.29 1 (EX332407) GQ02904.B7_M18 GQ029 - Xylem scrapings - AT NITE ... 48 0.29 1 (EX320804) GQ02816.SP6_H13 GQ028 - Cambium / phloem scrappin... 48 0.29 1 (EX320433) GQ02816.B7_H13 GQ028 - Cambium / phloem scrapping... 48 0.29 1 (EX318356) GQ02813.B7_B18 GQ028 - Cambium / phloem scrapping... 48 0.29 1 (EX316825) GQ02810.SP6_J03 GQ028 - Cambium / phloem scrappin... 48 0.29 1 (EX316470) GQ02810.B7_J03 GQ028 - Cambium / phloem scrapping... 48 0.29 1 (EX308878) GQ01309.T3_G04 GQ013 - Elongating ROOTS tips - sa... 48 0.29 1 (CT027683) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 40 0.34 7 (AJ307410) Yarrowia lipolytica complete mitochondrial genome. 34 0.36 6 (EE129488) SiJWC10ACR Lausanne fire ant library Solenopsis i... 44 0.37 2 (AM449663) Vitis vinifera, whole genome shotgun sequence, co... 38 0.40 3 (CU207238) Zebrafish DNA sequence from clone CH211-221G5 in ... 40 0.41 4 (AM462607) Vitis vinifera, whole genome shotgun sequence, co... 36 0.55 3 (AC190394) Canis Familiaris chromosome 26, clone XX-497F13, ... 34 0.55 6 (AC186137) Medicago truncatula chromosome 2 BAC clone mth2-7... 36 0.56 5 (AC223514) Bos taurus clone CH240-467K3, WORKING DRAFT SEQUE... 42 0.60 4 (AL928658) Mouse DNA sequence from clone RP23-238A18 on chro... 32 0.62 2 (CR848834) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 32 0.63 2 (CU914337) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 0.63 2 (CU151880) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 32 0.63 2 (DX534953) GH_MBb0055P21r GH_MBb Gossypium hirsutum genomic ... 30 0.76 3 (AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 34 0.80 7 (CU060472) Equus caballus GSS, BAC clone CH241-165D3, SP6 en... 32 0.81 3 (AC116921) Dictyostelium discoideum chromosome 2 map 4624505... 32 0.82 6 (AC223905) Bos taurus clone CH240-454I15, WORKING DRAFT SEQU... 46 0.98 4 (AL133332) Human DNA sequence from clone RP5-846D11 on chrom... 40 0.99 5 (AP003558) Homo sapiens genomic DNA, chromosome 11 clone:RP1... 46 1.2 1 (AC084833) Homo sapiens chromosome 11 clone RP11-1084M13 map... 46 1.2 1 (AC185565) Papio anubis clone RP41-160O5, WORKING DRAFT SEQU... 46 1.2 1 (EG920734) EST_ssal_evf_16 ssalevf mixed_tissue Salmo salar ... 46 1.2 1 (EG917598) EST_ssal_evf_52884 ssalevf mixed_tissue Salmo sal... 46 1.2 1 (DY740563) EST_ssal_rgb2_96302 ssalrgb2 mixed_tissue Salmo s... 46 1.2 1
>(AU266987) Dictyostelium discoideum vegetative cDNA clone:VSH154, 5' end single read. Length = 486
Score = 844 bits (426), Expect = 0.0 Identities = 426/426 (100%) Strand = Plus / Plus
Query: 1 ctcaaaatgaagaaaattgtttgtgtcgcaatcgttggaaagggaaataacccattattt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ctcaaaatgaagaaaattgtttgtgtcgcaatcgttggaaagggaaataacccattattt 60
Query: 61 attcaagatttttcatcaagtataactgatgaaaataaattaaaattacactatatcgtt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 attcaagatttttcatcaagtataactgatgaaaataaattaaaattacactatatcgtt 120
Query: 121 cattgttcattagatattatagaggataaacctggttcaaacaaaaagttaccaagtgat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 cattgttcattagatattatagaggataaacctggttcaaacaaaaagttaccaagtgat 180
Query: 181 atgtatttaggtttattatacccaactgaagattataaagtatatggatatttaacaaac 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 atgtatttaggtttattatacccaactgaagattataaagtatatggatatttaacaaac 240
Query: 241 acaaaaattaagttcattattgtagttttagatacatcagatattaaagattctgattta 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 acaaaaattaagttcattattgtagttttagatacatcagatattaaagattctgattta 300
Query: 301 aaattattttttaagagattacaaacattatttataaatacaacaagcaatccattttat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 aaattattttttaagagattacaaacattatttataaatacaacaagcaatccattttat 360
Query: 361 aaaccaaatagtaaagtagaatctaaaaagtttttacaagaagtaacaaatcttgtacca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 aaaccaaatagtaaagtagaatctaaaaagtttttacaagaagtaacaaatcttgtacca 420
Query: 421 tcattg 426 |||||| Sbjct: 421 tcattg 426
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 667,410,615 Number of extensions: 44944255 Number of successful extensions: 4424652 Number of sequences better than 10.0: 347 Length of query: 485 Length of database: 95,242,211,685 Length adjustment: 23 Effective length of query: 462 Effective length of database: 93,106,754,628 Effective search space: 43015320638136 Effective search space used: 43015320638136 X1: 11 (21.8 bits) S2: 21 (42.1 bits)
|
protein update |
2009. 6.23 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
1 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |