Contig-U06838-1
Contig ID Contig-U06838-1
Contig update 2001. 8.30
Contig sequence
>Contig-U06838-1 (Contig-U06838-1Q) /CSM_Contig/Contig-U06838-1Q.Seq.d
CTCAAAATGAAGAAAATTGTTTGTGTCGCAATCGTTGGAAAGGGAAATAA
CCCATTATTTATTCAAGATTTTTCATCAAGTATAACTGATGAAAATAAAT
TAAAATTACACTATATCGTTCATTGTTCATTAGATATTATAGAGGATAAA
CCTGGTTCAAACAAAAAGTTACCAAGTGATATGTATTTAGGTTTATTATA
CCCAACTGAAGATTATAAAGTATATGGATATTTAACAAACACAAAAATTA
AGTTCATTATTGTAGTTTTAGATACATCAGATATTAAAGATTCTGATTTA
AAATTATTTTTTAAGAGATTACAAACATTATTTATAAATACAACAAGCAA
TCCATTTTATAAACCAAATAGTAAAGTAGAATCTAAAAAGTTTTTACAAG
AAGTAACAAATCTTGTACCATCATTGTAAATTTAAAAATAAAAATAAAAT
AATTCATAAGTATGAAAATAGAATATAAAAAAAAA

Gap no gap
Contig length 485
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 1929388
End point 1928903
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U06838
List of clone(s)

est1=VSH154F,1,486
est2=VSH154Z,1,464
Translated Amino Acid sequence
LKMKKIVCVAIVGKGNNPLFIQDFSSSITDENKLKLHYIVHCSLDIIEDKPGSNKKLPSD
MYLGLLYPTEDYKVYGYLTNTKIKFIIVVLDTSDIKDSDLKLFFKRLQTLFINTTSNPFY
KPNSKVESKKFLQEVTNLVPSL*i*k*k*nns*v*k*nikk


Translated Amino Acid sequence (All Frames)
Frame A:
LKMKKIVCVAIVGKGNNPLFIQDFSSSITDENKLKLHYIVHCSLDIIEDKPGSNKKLPSD
MYLGLLYPTEDYKVYGYLTNTKIKFIIVVLDTSDIKDSDLKLFFKRLQTLFINTTSNPFY
KPNSKVESKKFLQEVTNLVPSL*i*k*k*nns*v*k*nikk


Frame B:
sk*rklfvsqslereithylfkifhqv*lmkin*nytisfivh*il*rinlvqtksyqvi
ci*vyytqlkiikymdi*qtqklssll*f*ihqilkili*nyflrdykhyl*iqqaihfi
nqivk*nlksfykk*qilyhhckfknknkiihkyenri*kk


Frame C:
qneenclcrnrwkgk*piiysrffikyn**k*ikitlyrslfiryyrg*twfkqkvtk*y
vfrfiipn*rl*siwifnkhkn*vhycsfryiry*rf*fkiif*eitniiykynkqsil*
tk**sri*kvftrsnksctiivnlkikik*fismkieykkk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U06838-1 (Contig-U06838-1Q)
/CSM_Contig/Contig-U06838-1Q.Seq.d
(485 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U06838-1 (Contig-U06838-1Q) /CSM_Contig/Conti... 844 0.0
Contig-U01056-1 (Contig-U01056-1Q) /CSM_Contig/Conti... 38 0.009
Contig-U14641-1 (Contig-U14641-1Q) /CSM_Contig/Conti... 36 0.034
Contig-U14131-1 (Contig-U14131-1Q) /CSM_Contig/Conti... 36 0.034
Contig-U01152-1 (Contig-U01152-1Q) /CSM_Contig/Conti... 36 0.034
Contig-U14466-1 (Contig-U14466-1Q) /CSM_Contig/Conti... 34 0.13
Contig-U13985-1 (Contig-U13985-1Q) /CSM_Contig/Conti... 34 0.13
Contig-U13789-1 (Contig-U13789-1Q) /CSM_Contig/Conti... 34 0.13
Contig-U12241-1 (Contig-U12241-1Q) /CSM_Contig/Conti... 34 0.13
Contig-U12088-1 (Contig-U12088-1Q) /CSM_Contig/Conti... 34 0.13

>Contig-U06838-1 (Contig-U06838-1Q) /CSM_Contig/Contig-U06838-1Q.Seq.d
Length = 485

Score = 844 bits (426), Expect = 0.0
Identities = 426/426 (100%)
Strand = Plus / Plus


Query: 1 ctcaaaatgaagaaaattgtttgtgtcgcaatcgttggaaagggaaataacccattattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcaaaatgaagaaaattgtttgtgtcgcaatcgttggaaagggaaataacccattattt 60


Query: 61 attcaagatttttcatcaagtataactgatgaaaataaattaaaattacactatatcgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attcaagatttttcatcaagtataactgatgaaaataaattaaaattacactatatcgtt 120


Query: 121 cattgttcattagatattatagaggataaacctggttcaaacaaaaagttaccaagtgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cattgttcattagatattatagaggataaacctggttcaaacaaaaagttaccaagtgat 180


Query: 181 atgtatttaggtttattatacccaactgaagattataaagtatatggatatttaacaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atgtatttaggtttattatacccaactgaagattataaagtatatggatatttaacaaac 240


Query: 241 acaaaaattaagttcattattgtagttttagatacatcagatattaaagattctgattta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acaaaaattaagttcattattgtagttttagatacatcagatattaaagattctgattta 300


Query: 301 aaattattttttaagagattacaaacattatttataaatacaacaagcaatccattttat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaattattttttaagagattacaaacattatttataaatacaacaagcaatccattttat 360


Query: 361 aaaccaaatagtaaagtagaatctaaaaagtttttacaagaagtaacaaatcttgtacca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaaccaaatagtaaagtagaatctaaaaagtttttacaagaagtaacaaatcttgtacca 420


Query: 421 tcattg 426
||||||
Sbjct: 421 tcattg 426


>Contig-U01056-1 (Contig-U01056-1Q) /CSM_Contig/Contig-U01056-1Q.Seq.d
Length = 596

Score = 38.2 bits (19), Expect = 0.009
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 288 agattctgatttaaaatta 306
|||||||||||||||||||
Sbjct: 440 agattctgatttaaaatta 458


>Contig-U14641-1 (Contig-U14641-1Q) /CSM_Contig/Contig-U14641-1Q.Seq.d
Length = 198

Score = 36.2 bits (18), Expect = 0.034
Identities = 18/18 (100%)
Strand = Plus / Minus


Query: 327 attatttataaatacaac 344
||||||||||||||||||
Sbjct: 65 attatttataaatacaac 48


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9773
Number of Sequences: 6905
Number of extensions: 9773
Number of successful extensions: 1299
Number of sequences better than 10.0: 444
length of query: 485
length of database: 5,674,871
effective HSP length: 16
effective length of query: 469
effective length of database: 5,564,391
effective search space: 2609699379
effective search space used: 2609699379
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11.10
Homology vs DNA
Query= Contig-U06838-1 (Contig-U06838-1Q) /CSM_Contig/Contig-U06838-1Q.Seq.d
(485 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU266987) Dictyostelium discoideum vegetative cDNA clone:VS... 844 0.0 1
(AU266988) Dictyostelium discoideum vegetative cDNA clone:VS... 837 0.0 1
(CN567368) tag08a10.y1 Hydra EST -Kiel 1 Hydra magnipapillat... 76 1e-09 1
(CN567097) tag08a10.x1 Hydra EST -Kiel 1 Hydra magnipapillat... 76 1e-09 1
(FC728365) CBBG4724.fwd CBBG Lottia gigantea 12,15,18h embry... 68 3e-07 1
(FC692782) CAXX3428.fwd CAXX Lottia gigantea from male gonad... 68 3e-07 1
(FC689506) CAXX2070.fwd CAXX Lottia gigantea from male gonad... 68 3e-07 1
(FC636398) CAXU1512.fwd CAXU Lottia gigantea from female gon... 68 3e-07 1
(FC592603) CAXP7117.fwd CAXP Lottia gigantea from head, foot... 68 3e-07 1
(FC574604) CAXP11206.fwd CAXP Lottia gigantea from head, foo... 68 3e-07 1
(FC561460) CAWF3876.fwd CAWF Lottia gigantea from mantle (H)... 68 3e-07 1
(AU083857) Cryptomeria japonica mRNA, clone:CC0584, 5' end, ... 58 5e-07 2
(BY897528) Cryptomeria japonica cDNA clone: CMFL003_E04, 3'e... 58 3e-04 1
(CP000716) Thermosipho melanesiensis BI429, complete genome. 42 0.009 15
(DN571737) 90163068 Sea Urchin primary mesenchyme cell cDNA ... 52 0.019 1
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 36 0.041 13
(AP004586) Oryza sativa Japonica Group genomic DNA, chromoso... 50 0.051 4
(AP004653) Oryza sativa Japonica Group genomic DNA, chromoso... 50 0.053 3
(BX000510) Oryza sativa chromosome 12, . BAC OJ1769_D07 of l... 50 0.074 1
(AP008218) Oryza sativa (japonica cultivar-group) genomic DN... 50 0.074 1
(AP008215) Oryza sativa (japonica cultivar-group) genomic DN... 50 0.074 1
(AP008214) Oryza sativa (japonica cultivar-group) genomic DN... 50 0.074 1
(AP008207) Oryza sativa (japonica cultivar-group) genomic DN... 50 0.074 1
(AP005568) Oryza sativa Japonica Group genomic DNA, chromoso... 50 0.074 1
(AP005483) Oryza sativa Japonica Group genomic DNA, chromoso... 50 0.074 1
(AP003442) Oryza sativa Japonica Group genomic DNA, chromoso... 50 0.074 1
(EA730548) Sequence 109427 from patent US 7365185. 50 0.074 1
(EA703408) Sequence 82287 from patent US 7365185. 50 0.074 1
(EA693250) Sequence 72129 from patent US 7365185. 50 0.074 1
(EA691877) Sequence 70756 from patent US 7365185. 50 0.074 1
(EA687545) Sequence 66424 from patent US 7365185. 50 0.074 1
(AP003870) Oryza sativa Japonica Group genomic DNA, chromoso... 50 0.074 1
(CT582329) Pinus pinaster bud EST. 50 0.074 1
(EX291354) 1579226_5_I08_024 PY06 Carica papaya cDNA, mRNA s... 50 0.074 1
(EX291118) 1579235_5_I17_071 PY06 Carica papaya cDNA, mRNA s... 50 0.074 1
(EX282118) 1569058_5_A16_064 PY06 Carica papaya cDNA, mRNA s... 50 0.074 1
(EX277520) 1564056_5_A06_031 PY06 Carica papaya cDNA, mRNA s... 50 0.074 1
(EX277120) 1563828_5_G18_073 PY06 Carica papaya cDNA, mRNA s... 50 0.074 1
(EX265708) 1446093_5_B03_016 PY06 Carica papaya cDNA, mRNA s... 50 0.074 1
(CB033034) EFCP023G09 flower bud Lambda ZapII cDNA Library P... 46 0.077 2
(ES874685) WS02926.CR_L22 SS-IB-A-FL-15 Picea sitchensis cDN... 48 0.29 1
(ES245945) WS0363.C21_M20 SS-B-N-21 Picea sitchensis cDNA cl... 48 0.29 1
(DY585043) C004-A4 Acropora millepora presettlement library ... 48 0.29 1
(DR584253) WS0335.C21_P05 WS-SE-N-A-18 Picea glauca cDNA clo... 48 0.29 1
(DR567150) WS02618.BR_B01 WS-PP-N-A-12 Picea glauca cDNA clo... 48 0.29 1
(DR559879) WS02618.C21.1_B01 WS-PP-N-A-12 Picea glauca cDNA ... 48 0.29 1
(DR466701) WS00939.B21_B16 IS-B-N-A-10 Picea engelmannii x P... 48 0.29 1
(DR465724) WS00936.B21_F15 IS-B-N-A-10 Picea engelmannii x P... 48 0.29 1
(CT749255) Paramecium tetraurelia 5-PRIME EST from clone LK0... 48 0.29 1
(EX442763) GQ04106.B7_H12 GQ041 - Shoot tip - Dormant (Norma... 48 0.29 1
(EX436176) GQ04001.B7_N16 GQ040 - Shoot tip - Active growth ... 48 0.29 1
(EX420043) GQ03714.B7_N20 GQ037 - Shoot tip - Dormant Picea ... 48 0.29 1
(EX408603) GQ03602.B7_N03 GQ036 - Shoot tip - Active growth ... 48 0.29 1
(EX384069) GQ03306.SP6_P15 GQ033 - Terminal leader (Normaliz... 48 0.29 1
(EX383704) GQ03306.B7_P15 GQ033 - Terminal leader (Normalize... 48 0.29 1
(EX381543) GQ03303.SP6_A03 GQ033 - Terminal leader (Normaliz... 48 0.29 1
(EX381193) GQ03303.B7_A03 GQ033 - Terminal leader (Normalize... 48 0.29 1
(EX365306) GQ03209.SP6_G19 GQ032 - Shoot tip (Normalized lib... 48 0.29 1
(EX364945) GQ03209.B7_G19 GQ032 - Shoot tip (Normalized libr... 48 0.29 1
(EX356947) GQ03121.B7_G05 GQ031 - Xylem Scrapings (Normalize... 48 0.29 1
(EX354795) GQ03115.B7_I18 GQ031 - Xylem Scrapings (Normalize... 48 0.29 1
(EX350544) GQ03108.SP6_N01 GQ031 - Xylem Scrapings (Normaliz... 48 0.29 1
(EX350182) GQ03108.B7_N01 GQ031 - Xylem Scrapings (Normalize... 48 0.29 1
(EX349818) GQ03107.SP6_N02 GQ031 - Xylem Scrapings (Normaliz... 48 0.29 1
(EX349450) GQ03107.B7_N02 GQ031 - Xylem Scrapings (Normalize... 48 0.29 1
(EX349135) GQ03106.SP6_P15 GQ031 - Xylem Scrapings (Normaliz... 48 0.29 1
(EX348773) GQ03106.B7_P15 GQ031 - Xylem Scrapings (Normalize... 48 0.29 1
(EX332748) GQ02904.SP6_M18 GQ029 - Xylem scrapings - AT NITE... 48 0.29 1
(EX332407) GQ02904.B7_M18 GQ029 - Xylem scrapings - AT NITE ... 48 0.29 1
(EX320804) GQ02816.SP6_H13 GQ028 - Cambium / phloem scrappin... 48 0.29 1
(EX320433) GQ02816.B7_H13 GQ028 - Cambium / phloem scrapping... 48 0.29 1
(EX318356) GQ02813.B7_B18 GQ028 - Cambium / phloem scrapping... 48 0.29 1
(EX316825) GQ02810.SP6_J03 GQ028 - Cambium / phloem scrappin... 48 0.29 1
(EX316470) GQ02810.B7_J03 GQ028 - Cambium / phloem scrapping... 48 0.29 1
(EX308878) GQ01309.T3_G04 GQ013 - Elongating ROOTS tips - sa... 48 0.29 1
(CT027683) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 40 0.34 7
(AJ307410) Yarrowia lipolytica complete mitochondrial genome. 34 0.36 6
(EE129488) SiJWC10ACR Lausanne fire ant library Solenopsis i... 44 0.37 2
(AM449663) Vitis vinifera, whole genome shotgun sequence, co... 38 0.40 3
(CU207238) Zebrafish DNA sequence from clone CH211-221G5 in ... 40 0.41 4
(AM462607) Vitis vinifera, whole genome shotgun sequence, co... 36 0.55 3
(AC190394) Canis Familiaris chromosome 26, clone XX-497F13, ... 34 0.55 6
(AC186137) Medicago truncatula chromosome 2 BAC clone mth2-7... 36 0.56 5
(AC223514) Bos taurus clone CH240-467K3, WORKING DRAFT SEQUE... 42 0.60 4
(AL928658) Mouse DNA sequence from clone RP23-238A18 on chro... 32 0.62 2
(CR848834) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 32 0.63 2
(CU914337) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 0.63 2
(CU151880) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 32 0.63 2
(DX534953) GH_MBb0055P21r GH_MBb Gossypium hirsutum genomic ... 30 0.76 3
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 34 0.80 7
(CU060472) Equus caballus GSS, BAC clone CH241-165D3, SP6 en... 32 0.81 3
(AC116921) Dictyostelium discoideum chromosome 2 map 4624505... 32 0.82 6
(AC223905) Bos taurus clone CH240-454I15, WORKING DRAFT SEQU... 46 0.98 4
(AL133332) Human DNA sequence from clone RP5-846D11 on chrom... 40 0.99 5
(AP003558) Homo sapiens genomic DNA, chromosome 11 clone:RP1... 46 1.2 1
(AC084833) Homo sapiens chromosome 11 clone RP11-1084M13 map... 46 1.2 1
(AC185565) Papio anubis clone RP41-160O5, WORKING DRAFT SEQU... 46 1.2 1
(EG920734) EST_ssal_evf_16 ssalevf mixed_tissue Salmo salar ... 46 1.2 1
(EG917598) EST_ssal_evf_52884 ssalevf mixed_tissue Salmo sal... 46 1.2 1
(DY740563) EST_ssal_rgb2_96302 ssalrgb2 mixed_tissue Salmo s... 46 1.2 1

>(AU266987) Dictyostelium discoideum vegetative cDNA clone:VSH154,
5' end single read.
Length = 486

Score = 844 bits (426), Expect = 0.0
Identities = 426/426 (100%)
Strand = Plus / Plus


Query: 1 ctcaaaatgaagaaaattgtttgtgtcgcaatcgttggaaagggaaataacccattattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcaaaatgaagaaaattgtttgtgtcgcaatcgttggaaagggaaataacccattattt 60


Query: 61 attcaagatttttcatcaagtataactgatgaaaataaattaaaattacactatatcgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attcaagatttttcatcaagtataactgatgaaaataaattaaaattacactatatcgtt 120


Query: 121 cattgttcattagatattatagaggataaacctggttcaaacaaaaagttaccaagtgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cattgttcattagatattatagaggataaacctggttcaaacaaaaagttaccaagtgat 180


Query: 181 atgtatttaggtttattatacccaactgaagattataaagtatatggatatttaacaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atgtatttaggtttattatacccaactgaagattataaagtatatggatatttaacaaac 240


Query: 241 acaaaaattaagttcattattgtagttttagatacatcagatattaaagattctgattta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acaaaaattaagttcattattgtagttttagatacatcagatattaaagattctgattta 300


Query: 301 aaattattttttaagagattacaaacattatttataaatacaacaagcaatccattttat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaattattttttaagagattacaaacattatttataaatacaacaagcaatccattttat 360


Query: 361 aaaccaaatagtaaagtagaatctaaaaagtttttacaagaagtaacaaatcttgtacca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaaccaaatagtaaagtagaatctaaaaagtttttacaagaagtaacaaatcttgtacca 420


Query: 421 tcattg 426
||||||
Sbjct: 421 tcattg 426

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 667,410,615
Number of extensions: 44944255
Number of successful extensions: 4424652
Number of sequences better than 10.0: 347
Length of query: 485
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 462
Effective length of database: 93,106,754,628
Effective search space: 43015320638136
Effective search space used: 43015320638136
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 6.23
Homology vs Protein
Query= Contig-U06838-1 (Contig-U06838-1Q) /CSM_Contig/Contig-U06838-1Q.Seq.d
(485 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

EF678549_1(EF678549|pid:none) Picea sitchensis clone WS02926_L22... 147 9e-35
EF144992_1(EF144992|pid:none) Populus trichocarpa clone WS0111_G... 147 9e-35
AC006234_13(AC006234|pid:none) Arabidopsis thaliana chromosome 2... 146 3e-34
AY086771_1(AY086771|pid:none) Arabidopsis thaliana clone 27566 m... 145 6e-34
AP008215_1267(AP008215|pid:none) Oryza sativa (japonica cultivar... 142 5e-33
AK060244_1(AK060244|pid:none) Oryza sativa Japonica Group cDNA c... 142 5e-33
BT087450_1(BT087450|pid:none) Zea mays full-length cDNA clone ZM... 141 9e-33
AB109206_10(AB109206|pid:none) Oryza sativa Japonica Group genom... 139 3e-32
BT079259_1(BT079259|pid:none) Esox lucius clone eluc-evq-505-151... 125 5e-28
(A6H7F7) RecName: Full=Trafficking protein particle complex subu... 125 5e-28
AF161524_1(AF161524|pid:none) Homo sapiens HSPC176 mRNA, complet... 124 1e-27
BC166907_1(BC166907|pid:none) Rattus norvegicus trafficking prot... 123 2e-27
(Q5M8X5) RecName: Full=Trafficking protein particle complex subu... 123 2e-27
BT072009_1(BT072009|pid:none) Salmo salar clone ssal-rgf-507-148... 122 3e-27
BT048620_1(BT048620|pid:none) Salmo salar clone ssal-eve-552-292... 122 6e-27
(Q9JME7) RecName: Full=Trafficking protein particle complex subu... 121 7e-27
DQ213452_1(DQ213452|pid:none) Taeniopygia guttata clone 0058P001... 121 1e-26
AK126779_1(AK126779|pid:none) Homo sapiens cDNA FLJ44827 fis, cl... 120 2e-26
BT050093_1(BT050093|pid:none) Salmo salar clone ssal-evd-551-012... 120 2e-26
(Q9UL33) RecName: Full=Trafficking protein particle complex subu... 119 3e-26
AX771003_1(AX771003|pid:none) Sequence 23 from Patent WO03004532. 118 6e-26
A84595(A84595)hypothetical protein At2g20930 [imported] - Arabid... 111 8e-24
BT048031_1(BT048031|pid:none) Salmo salar clone ssal-sjb-020-226... 108 5e-23
AE013599_1295(AE013599|pid:none) Drosophila melanogaster chromos... 105 7e-22
AY814433_1(AY814433|pid:none) Schistosoma japonicum SJCHGC06725 ... 92 8e-18
BT057850_1(BT057850|pid:none) Salmo salar clone ssal-evd-579-078... 88 9e-17
FN357722_18(FN357722|pid:none) Schistosoma mansoni genome sequen... 86 3e-16
BC087348_1(BC087348|pid:none) Xenopus laevis hypothetical LOC495... 86 4e-16
FN357722_17(FN357722|pid:none) Schistosoma mansoni genome sequen... 85 1e-15
(Q5RBK9) RecName: Full=Trafficking protein particle complex subu... 84 2e-15
AK318632_1(AK318632|pid:none) Arabidopsis thaliana AT2G20930 mRN... 78 1e-13
CP001577_333(CP001577|pid:none) Micromonas sp. RCC299 chromosome... 77 2e-13
BC076455_1(BC076455|pid:none) Danio rerio trafficking protein pa... 73 3e-12
(Q54RV6) RecName: Full=Trafficking protein particle complex subu... 63 4e-09
FN392320_506(FN392320|pid:none) Pichia pastoris GS115 chromosome... 62 7e-09
AK077643_1(AK077643|pid:none) Mus musculus 8 days embryo whole b... 62 9e-09
(O14582) RecName: Full=Trafficking protein particle complex subu... 62 9e-09
(Q5RES6) RecName: Full=Trafficking protein particle complex subu... 61 1e-08
(Q3T0F2) RecName: Full=Trafficking protein particle complex subu... 61 2e-08
(Q9CQP2) RecName: Full=Trafficking protein particle complex subu... 61 2e-08
AK002369_1(AK002369|pid:none) Mus musculus adult male kidney cDN... 60 3e-08
T29507(T29507) hypothetical protein W05H7.3 - Caenorhabditis ele... 60 3e-08
AF291676_1(AF291676|pid:none) Homo sapiens MBP-1 interacting pro... 59 6e-08
AL844509_319(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 57 3e-07
BC121995_1(BC121995|pid:none) Xenopus tropicalis hypothetical pr... 56 5e-07
BT048382_1(BT048382|pid:none) Salmo salar clone ssal-evf-568-238... 55 6e-07
BT078939_1(BT078939|pid:none) Esox lucius clone eluc-evq-507-202... 55 6e-07
EF191819_1(EF191819|pid:none) Taeniopygia guttata clone 0069P000... 55 8e-07
BC124169_1(BC124169|pid:none) Danio rerio zgc:152903, mRNA (cDNA... 54 1e-06
(Q9USZ5) RecName: Full=Transport protein particle 20 kDa subunit... 54 1e-06
AL731638_2(AL731638|pid:none) Oryza sativa genomic DNA, chromoso... 54 2e-06
AK071179_1(AK071179|pid:none) Oryza sativa Japonica Group cDNA c... 53 3e-06
AE014296_2799(AE014296|pid:none) Drosophila melanogaster chromos... 53 3e-06
CU928176_658(CU928176|pid:none) Zygosaccharomyces rouxii strain ... 53 4e-06
AL606604_10(AL606604|pid:none) Oryza sativa genomic DNA, chromos... 52 5e-06
CR382124_653(CR382124|pid:none) Kluyveromyces lactis strain NRRL... 52 7e-06
AM270062_5(AM270062|pid:none) Aspergillus niger contig An04c0010... 51 1e-05
AY581838_1(AY581838|pid:none) Cynodon dactylon putative TRAPP su... 51 2e-05
BT039412_1(BT039412|pid:none) Zea mays full-length cDNA clone ZM... 50 2e-05
AE016820_615(AE016820|pid:none) Ashbya gossypii (= Eremothecium ... 50 3e-05
(O13732) RecName: Full=Uncharacterized protein C15A10.12c; &CU3... 49 5e-05
EU952276_1(EU952276|pid:none) Zea mays clone 1274869 trafficking... 48 1e-04
CR380950_227(CR380950|pid:none) Candida glabrata strain CBS138 c... 47 2e-04
FN357658_3(FN357658|pid:none) Schistosoma mansoni genome sequenc... 46 5e-04
CR382134_642(CR382134|pid:none) Debaryomyces hansenii strain CBS... 45 0.001
CR382136_642(CR382136|pid:none) Debaryomyces hansenii strain CBS... 44 0.001
AY814749_1(AY814749|pid:none) Schistosoma japonicum SJCHGC05949 ... 44 0.003
AP008210_1256(AP008210|pid:none) Oryza sativa (japonica cultivar... 42 0.006
AM910987_159(AM910987|pid:none) Plasmodium knowlesi strain H chr... 40 0.021
CP000726_567(CP000726|pid:none) Clostridium botulinum A str. ATC... 39 0.048
AM412317_585(AM412317|pid:none) Clostridium botulinum A str. ATC... 39 0.048
BT068029_1(BT068029|pid:none) Zea mays full-length cDNA clone ZM... 38 0.11
CP001581_620(CP001581|pid:none) Clostridium botulinum A2 str. Ky... 37 0.18
CP000939_602(CP000939|pid:none) Clostridium botulinum B1 str. Ok... 37 0.18
CP000728_581(CP000728|pid:none) Clostridium botulinum F str. Lan... 37 0.31
AC018849_17(AC018849|pid:none) Arabidopsis thaliana chromosome 1... 37 0.31
CU633900_268(CU633900|pid:none) Podospora anserina genomic DNA c... 36 0.40
CR382126_722(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 35 0.69
AC116330_1(AC116330|pid:none) Dictyostelium discoideum chromosom... 35 1.2
(Q557G3) RecName: Full=Trafficking protein particle complex subu... 35 1.2
AE017243_335(AE017243|pid:none) Mycoplasma hyopneumoniae J, comp... 34 1.5
(B2X1Z3) RecName: Full=DNA-directed RNA polymerase subunit beta'... 34 2.0
AC150372_9(AC150372|pid:none) Medicago truncatula clone mth2-151... 33 3.4
(Q7UZM6) RecName: Full=Protein crcB homolog 2; &BX548174_1874(B... 33 3.4
A88040(A88040)protein F47F6.1 [imported] - Caenorhabditis elegans 33 4.5
AE017263_585(AE017263|pid:none) Mesoplasma florum L1 complete ge... 33 4.5
CP001083_603(CP001083|pid:none) Clostridium botulinum Ba4 str. 6... 32 5.8
T29312(T29312) hypothetical protein F36D4.2 - Caenorhabditis ele... 32 5.8
AE014187_418(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 32 7.6
CP000783_286(CP000783|pid:none) Enterobacter sakazakii ATCC BAA-... 32 7.6
CP001154_730(CP001154|pid:none) Laribacter hongkongensis HLHK9, ... 32 7.6
AE015927_148(AE015927|pid:none) Clostridium tetani E88, complete... 32 9.9
FJ008913_2(FJ008913|pid:none) Bacteroides phage B40-8 culture-co... 32 9.9
CP001080_1188(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP... 32 9.9

>EF678549_1(EF678549|pid:none) Picea sitchensis clone WS02926_L22
unknown mRNA.
Length = 143

Score = 147 bits (372), Expect = 9e-35
Identities = 69/139 (49%), Positives = 102/139 (73%), Gaps = 3/139 (2%)
Frame = +1

Query: 16 IVCVAIVGKGNNPLFIQDFSSSITDENKLKLHYIVHCSLDIIEDKPGSNKKLPSDM---Y 186
I+CVA+VG NNPL+IQ F+ ++ LKLHYIVHCSLD+I+++ + KK+ S + Y
Sbjct: 2 IICVAVVGLQNNPLYIQSFTDG---DDALKLHYIVHCSLDVIDERVNNPKKIGSTLNETY 58

Query: 187 LGLLYPTEDYKVYGYLTNTKIKFIIVVLDTSDIKDSDLKLFFKRLQTLFINTTSNPFYKP 366
LGLLYP+E+YKVYGYLTNTK+KFI+V D D+KD+D++ FF++ +++ SNPF+ P
Sbjct: 59 LGLLYPSENYKVYGYLTNTKVKFILVTTD-EDLKDADVRSFFRQFHAAYVDAVSNPFHVP 117

Query: 367 NSKVESKKFLQEVTNLVPS 423
++ S+ F + V+ +V S
Sbjct: 118 GKRITSRAFAERVSTIVRS 136

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 741,121,264
Number of extensions: 14322264
Number of successful extensions: 35952
Number of sequences better than 10.0: 94
Number of HSP's gapped: 35622
Number of HSP's successfully gapped: 96
Length of query: 161
Length of database: 1,040,966,779
Length adjustment: 118
Effective length of query: 43
Effective length of database: 662,861,149
Effective search space: 28503029407
Effective search space used: 28503029407
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

PSORT

psg: 0.95 gvh: 0.40 alm: 0.41 top: 0.27 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for Contig-U06838-1 is cyt

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0