>Contig-U06829-1 (Contig-U06829-1Q) /CSM_Contig/Contig-U06829-1Q.Seq.d
GTAAAAGAATGTAATGAAAATGAAAAAATTAATTTTATAATAAAATTATT
AGATTTCTATTATGAATATAGTAGTTTAGAAGGTATAAGTGCATTTTATG
GTTTACTATTATTAAAAGATAATAAAATCCAACAAGAAGATTTTAATAGA
CTATTATTTATAAATGAAAAAACAGATTTAATATTTTCATTAAGATTTGG
TAATTTTGATTTATTTAAAATTACATATTCAACCTTTGAAAAATATAGAG
AGGAAATTACTCAAAATTGGAGATTTTTAATTTTATTTCAATTTGAAAAG
AATAAGGCCAACCAGATTTCATTCATTGATAAAGTTTGTAATTTTTTAAT
TTATTCAAAAAATGAAAAATTCATTGATTTTGGTTTCAATAATTTTTTAT
TTGGTCAAGTTTTATTATTTGATGATTTAGAATTGGTACAATTAGTTTA

est1=VSG881F,1,450

VKECNENEKINFIIKLLDFYYEYSSLEGISAFYGLLLLKDNKIQQEDFNRLLFINEKTDL
IFSLRFGNFDLFKITYSTFEKYREEITQNWRFLILFQFEKNKANQISFIDKVCNFLIYSK
NEKFIDFGFNNFLFGQVLLFDDLELVQLV

Frame A:
VKECNENEKINFIIKLLDFYYEYSSLEGISAFYGLLLLKDNKIQQEDFNRLLFINEKTDL
IFSLRFGNFDLFKITYSTFEKYREEITQNWRFLILFQFEKNKANQISFIDKVCNFLIYSK
NEKFIDFGFNNFLFGQVLLFDDLELVQLV


Frame B:
*knvmkmkklil**ny*isimnivv*kv*vhfmvyyy*kiiksnkkilidyyl*mkkqi*
yfh*dlviliylklhiqplknierkllkigdf*fyfnlkrirptrfhslikfvif*fiqk
mknslilvsiifylvkfyylmi*nwyn*f


Frame C:
krm**k*kn*fynkiirfll*i**frrykcilwftiikr**nptrrf**tiiyk*knrfn
ifikiw*f*fi*nyifnl*ki*rgnyskleifnfisi*ke*gqpdfih**sl*ffnlfkk
*kih*fwfq*ffiwssfii**frigtisl

Query= Contig-U06829-1 (Contig-U06829-1Q)
/CSM_Contig/Contig-U06829-1Q.Seq.d
         (449 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06829-1 (Contig-U06829-1Q) /CSM_Contig/Conti...   706  0.0
Contig-U11936-1 (Contig-U11936-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U14755-1 (Contig-U14755-1Q) /CSM_Contig/Conti...    38  0.008
Contig-U14427-1 (Contig-U14427-1Q) /CSM_Contig/Conti...    36  0.031
Contig-U11753-1 (Contig-U11753-1Q) /CSM_Contig/Conti...    36  0.031
Contig-U11103-1 (Contig-U11103-1Q) /CSM_Contig/Conti...    36  0.031
Contig-U11059-1 (Contig-U11059-1Q) /CSM_Contig/Conti...    36  0.031
Contig-U10089-1 (Contig-U10089-1Q) /CSM_Contig/Conti...    36  0.031
Contig-U09339-1 (Contig-U09339-1Q) /CSM_Contig/Conti...    36  0.031
Contig-U14605-1 (Contig-U14605-1Q) /CSM_Contig/Conti...    28  7.6

>Contig-U06829-1 (Contig-U06829-1Q) /CSM_Contig/Contig-U06829-1Q.Seq.d
          Length = 449

 Score =  706 bits (356), Expect = 0.0
 Identities = 356/356 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtaaaagaatgtaatgaaaatgaaaaaattaattttataataaaattattagatttctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtaaaagaatgtaatgaaaatgaaaaaattaattttataataaaattattagatttctat 60

                                                                       
Query: 61  tatgaatatagtagtttagaaggtataagtgcattttatggtttactattattaaaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tatgaatatagtagtttagaaggtataagtgcattttatggtttactattattaaaagat 120

                                                                       
Query: 121 aataaaatccaacaagaagattttaatagactattatttataaatgaaaaaacagattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aataaaatccaacaagaagattttaatagactattatttataaatgaaaaaacagattta 180

                                                                       
Query: 181 atattttcattaagatttggtaattttgatttatttaaaattacatattcaacctttgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atattttcattaagatttggtaattttgatttatttaaaattacatattcaacctttgaa 240

                                                                       
Query: 241 aaatatagagaggaaattactcaaaattggagatttttaattttatttcaatttgaaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaatatagagaggaaattactcaaaattggagatttttaattttatttcaatttgaaaag 300

                                                                   
Query: 301 aataaggccaaccagatttcattcattgataaagtttgtaattttttaatttattc 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aataaggccaaccagatttcattcattgataaagtttgtaattttttaatttattc 356


 Score = 42.1 bits (21), Expect = 5e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 429 agaattggtacaattagttta 449
           |||||||||||||||||||||
Sbjct: 429 agaattggtacaattagttta 449


>Contig-U11936-1 (Contig-U11936-1Q) /CSM_Contig/Contig-U11936-1Q.Seq.d
          Length = 2453

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 207 tgatttatttaaaattacat 226
           ||||||||||||||||||||
Sbjct: 345 tgatttatttaaaattacat 364


>Contig-U14755-1 (Contig-U14755-1Q) /CSM_Contig/Contig-U14755-1Q.Seq.d
          Length = 673

 Score = 38.2 bits (19), Expect = 0.008
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 329 ataaagtttgtaattttttaatttatt 355
           ||||| ||| |||||||||||||||||
Sbjct: 144 ataaattttttaattttttaatttatt 118


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,795
Number of Sequences: 6905
Number of extensions: 17795
Number of successful extensions: 2595
Number of sequences better than 10.0: 942
length of query: 449
length of database: 5,674,871
effective HSP length: 16
effective length of query: 433
effective length of database: 5,564,391
effective search space: 2409381303
effective search space used: 2409381303
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)

Query= Contig-U06829-1 (Contig-U06829-1Q) /CSM_Contig/Contig-U06829-1Q.Seq.d
         (449 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU266895) Dictyostelium discoideum vegetative cDNA clone:VS...   561   e-156  1
(CP000915) Francisella tularensis subsp. mediasiatica FSC147...    44   0.011  13
(AC222502) Bos taurus clone CH240-41P6, WORKING DRAFT SEQUEN...    44   0.024  5
(AX344963) Sequence 34 from Patent WO0200928.                      48   0.064  2
(CU019657) Zebrafish DNA sequence from clone DKEY-23K10 in l...    42   0.12   2
(AL445564) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    36   0.23   7
(AC161363) Mus musculus BAC clone RP24-554L15 from chromosom...    40   0.25   3
(AM431907) Vitis vinifera contig VV78X141551.24, whole genom...    48   0.27   1
(AM427717) Vitis vinifera contig VV78X122800.3, whole genome...    48   0.27   1
(AR217238) Sequence 7 from patent US 6413751.                      48   0.27   1
(DH434285) Macropus eugenii DNA with T7 primer, fosmid clone...    48   0.27   1
(EY110973) CAZI7081.fwd CAZI Artemisia annua normalized leaf...    48   0.27   1
(EY107712) CAZI5396.fwd CAZI Artemisia annua normalized leaf...    48   0.27   1
(EY086170) CAZI17247.fwd CAZI Artemisia annua normalized lea...    48   0.27   1
(EY085479) CAZI1689.fwd CAZI Artemisia annua normalized leaf...    48   0.27   1
(AM086406) Helicobacter pylori partial 1351 gene and partial...    48   0.27   1
(AB231864) Schistosoma mansoni gene for zinc finger protein ...    44   0.29   4
(EV834620) FMMAH04TF Tetrahymena thermophila SB210 cDNA libr...    36   0.30   3
(AX344560) Sequence 11 from Patent WO0200932.                      34   0.34   7
(AJ928822) Theileria annulata EST, clone tam020e07_q1k.            28   0.38   4
(CP000903) Bacillus weihenstephanensis KBAB4, complete genome.     42   0.47   15
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    34   0.51   9
(CU915694) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   0.55   4
(CP000049) Borrelia turicatae 91E135, complete genome.             36   0.56   9
(AM445028) Vitis vinifera, whole genome shotgun sequence, co...    36   0.57   3
(Z28975) P.falciparum (K1) Ag15 gene.                              40   0.57   2
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6...    40   0.68   7
(CU695142) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   0.70   3
(EJ684946) 1092955169301 Global-Ocean-Sampling_GS-30-02-01-1...    32   0.75   2
(EJ731086) 1092960145368 Global-Ocean-Sampling_GS-30-02-01-1...    32   0.75   2
(M94732) Plasmodium falciparum 15 kDa vesicular-like antigen...    40   0.75   2
(AC181832) Strongylocentrotus purpuratus clone R3-1022O8, WO...    46   0.81   2
(DE610092) Bombyx mori genomic DNA, Fosmid clone:GBMFno274_d...    42   0.81   2
(AC153840) Mus musculus 10 BAC RP23-271A22 (Roswell Park Can...    40   0.88   3
(AP010619) Lotus japonicus genomic DNA, chromosome 5, clone:...    42   0.89   3
(BX511211) Zebrafish DNA sequence from clone DKEY-41G3 in li...    46   1.1    1
(BV429596) S237P6103FA1.T0 PortugueseWaterDog Canis familiar...    46   1.1    1
(AL356605) Human DNA sequence from clone RP11-414G18 on chro...    46   1.1    1
(AL022170) Human DNA sequence from clone RP3-501N12 on chrom...    46   1.1    1
(AC012384) Homo sapiens 12q24.1-118.9-120.5 BAC RP11-256L11 ...    46   1.1    1
(CU855744) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.1    1
(AC027692) Homo sapiens chromosome 1 clone RP11-289G11, *** ...    46   1.1    1
(AL138730) Human DNA sequence *** SEQUENCING CANCELLED *** f...    46   1.1    1
(AC178282) Strongylocentrotus purpuratus clone R3-3093O17, W...    46   1.1    1
(AQ590412) HS_5388_A1_B08_T7A RPCI-11 Human Male BAC Library...    46   1.1    1
(FH696287) CHO_OF5133xk19f1.ab1 CHO_OF5 Nicotiana tabacum ge...    46   1.1    1
(FH509611) CHO_OF4820xh04f1.ab1 CHO_OF4 Nicotiana tabacum ge...    46   1.1    1
(FH251370) CHO_OF3198xj14r1.ab1 CHO_OF3 Nicotiana tabacum ge...    46   1.1    1
(CW868768) she2h65-58.b_060.ab1 Whole-genome shotgun library...    46   1.1    1
(BI421084) UMN44D12 Canine Brain cDNA Library Canis lupus fa...    46   1.1    1
(AC195285) Gallus gallus chromosome 4 clone CH261-66G19, ***...    40   1.1    4
(AC198625) Pan troglodytes BAC clone CH251-456C7 from chromo...    42   1.1    6
(AC098164) Rattus norvegicus clone CH230-90F3, *** SEQUENCIN...    38   1.1    4
(ER845550) PPTIG03TR Solanum tuberosum RHPOTKEY BAC ends Sol...    32   1.2    3
(AC021449) Homo sapiens clone RP11-58M12, WORKING DRAFT SEQU...    34   1.2    4
(AL671870) Mouse DNA sequence from clone RP23-204I23 on chro...    36   1.3    5
(AC178530) Strongylocentrotus purpuratus clone R3-3027N15, W...    40   1.5    3
(EK071801) 1092960199236 Global-Ocean-Sampling_GS-31-01-01-1...    36   1.5    3
(BZ545669) OGAFV34TC ZM2_0.7_1.5_KB Zea mays genomic clone Z...    42   1.5    2
(CG158142) PUJAS80TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    42   1.5    2
(EJ109460) 1092343148668 Global-Ocean-Sampling_GS-27-01-01-1...    42   1.6    2
(CW949160) TcB33.3_H03_SP6 Tribolium BAC library Tribolium c...    32   1.7    3
(AC168849) Medicago truncatula chromosome 8 clone mth2-69p13...    32   1.7    7
(CC870227) NDL.30G23.SP6 Notre Dame Liverpool Aedes aegypti ...    40   1.7    2
(DQ870926) Bombus ignitus mitochondrion, complete genome.          30   1.8    5
(EJ304831) 1095390071777 Global-Ocean-Sampling_GS-27-01-01-1...    42   1.9    2
(AC222767) Bos taurus clone CH240-43C8, WORKING DRAFT SEQUEN...    44   1.9    4
(CT009558) M.truncatula DNA sequence from clone MTH2-72I11 o...    40   1.9    5
(CP000728) Clostridium botulinum F str. Langeland, complete ...    34   1.9    13
(AM433440) Vitis vinifera contig VV78X138200.7, whole genome...    38   1.9    3
(AX349002) Sequence 460 from Patent WO0202807.                     32   1.9    4
(AL021482) Caenorhabditis elegans YAC Y39A1B.                      38   2.0    3
(CR376791) Mouse DNA sequence *** SEQUENCING IN PROGRESS ***...    34   2.1    2
(AC162922) Mus musculus BAC clone RP23-314M6 from chromosome...    32   2.1    2
(AC169234) Bos taurus clone CH240-214F20, WORKING DRAFT SEQU...    32   2.1    2
(AC094162) Rattus norvegicus clone CH230-2O20, WORKING DRAFT...    32   2.1    2
(CR376744) Mouse DNA sequence *** SEQUENCING IN PROGRESS ***...    34   2.1    2
(AC153409) Bos taurus clone CH240-20M7, WORKING DRAFT SEQUEN...    34   2.1    2
(AL773507) Mouse DNA sequence from clone RP23-322E14 on chro...    34   2.1    2
(AC129293) Mus musculus BAC clone RP24-535M14 from chromosom...    32   2.1    2
(CT956059) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   2.1    2
(CU151865) Pig DNA sequence from clone CH242-280G12 on chrom...    32   2.1    2
(CU210868) Mouse DNA sequence from clone DN-69P21 on chromos...    32   2.1    2
(AC153755) Taeniopygia guttata clone TG_Ba-251C7, WORKING DR...    34   2.1    2
(AL513550) Human DNA sequence from clone RP11-98I9 on chromo...    34   2.2    2
(AC202307) Medicago truncatula clone mth2-105p19, WORKING DR...    34   2.2    2
(AC016940) Homo sapiens X PAC RP5-937E21 (Roswell Park Cance...    32   2.2    4
(AP004272) Oryza sativa Japonica Group genomic DNA, chromoso...    34   2.3    5
(AM441263) Vitis vinifera contig VV78X203565.8, whole genome...    36   2.3    4
(AM447820) Vitis vinifera contig VV78X201518.13, whole genom...    32   2.5    2
(AK122577) Mus musculus mRNA for mKIAA3002 protein.                32   2.5    2
(BC094667) Mus musculus rosbin, round spermatid basic protei...    32   2.5    2
(AK138603) Mus musculus adult male spinal cord cDNA, RIKEN f...    32   2.6    2
(BD458658) NOVEL POLYNUCLEOTIDES AND POLYPEPTIDES ENCODED TH...    34   2.6    2
(AK087685) Mus musculus 2 days pregnant adult female ovary c...    32   2.6    2
(BD183989) Novel genes associated with maintenance of smooth...    34   2.6    2
(DI166455) MOUSE SPERMATOGENESIS GENES, HUMAN MALE STERILITY...    32   2.6    2
(DI001191) MOUSE SPERMATOGENESIS GENES, HUMAN MALE STERILITY...    32   2.6    2
(BD354424) Mouse spermatogenesis genes, mutations of male in...    32   2.6    2
(AB101658) Mus musculus mRNA for ROSBIN, complete cds.             32   2.6    2

>(AU266895) Dictyostelium discoideum vegetative cDNA clone:VSG881,
           5' end single read.
          Length = 450

 Score =  561 bits (283), Expect = e-156
 Identities = 283/283 (100%)
 Strand = Plus / Plus


Query: 52  gatttctattatgaatatagtagtttagaaggtataagtgcattttatggtttactatta 111
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  gatttctattatgaatatagtagtttagaaggtataagtgcattttatggtttactatta 111


Query: 112 ttaaaagataataaaatccaacaagaagattttaatagactattatttataaatgaaaaa 171
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 ttaaaagataataaaatccaacaagaagattttaatagactattatttataaatgaaaaa 171


Query: 172 acagatttaatattttcattaagatttggtaattttgatttatttaaaattacatattca 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 acagatttaatattttcattaagatttggtaattttgatttatttaaaattacatattca 231


Query: 232 acctttgaaaaatatagagaggaaattactcaaaattggagatttttaattttatttcaa 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 acctttgaaaaatatagagaggaaattactcaaaattggagatttttaattttatttcaa 291


Query: 292 tttgaaaagaataaggccaaccagatttcattcattgataaag 334
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tttgaaaagaataaggccaaccagatttcattcattgataaag 334

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 523,979,266
Number of extensions: 38550611
Number of successful extensions: 3757242
Number of sequences better than 10.0: 347
Length of query: 449
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 426
Effective length of database: 93,106,754,628
Effective search space: 39663477471528
Effective search space used: 39663477471528
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

Query= Contig-U06829-1 (Contig-U06829-1Q) /CSM_Contig/Contig-U06829-1Q.Seq.d
         (449 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL844509_52(AL844509|pid:none) Plasmodium falciparum 3D7 chromos...    37   0.17
CP000395_842(CP000395|pid:none) Borrelia afzelii PKo, complete g...    37   0.28
AE000783_829(AE000783|pid:none) Borrelia burgdorferi B31, comple...    37   0.28
EF621568_1(EF621568|pid:none) Tetrahymena thermophila dynein hea...    36   0.37
AL929358_58(AL929358|pid:none) Plasmodium falciparum strain 3D7,...    35   0.82
AF188143_1(AF188143|pid:none) Oxytricha nova clone 33 unknown pr...    35   0.82
AL844508_306(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    35   0.82
CP000881_10(CP000881|pid:none) Hemiselmis andersenii chromosome ...    35   1.1
AM910986_80(AM910986|pid:none) Plasmodium knowlesi strain H chro...    35   1.1
AJ236243_1(AJ236243|pid:none) Convolvulus arvensis ndhF gene.          34   1.8
(Q8I3Z1) RecName: Full=MATH and LRR domain-containing protein PF...    34   1.8
CP000768_617(CP000768|pid:none) Campylobacter jejuni subsp. doyl...    34   1.8
AP006628_411(AP006628|pid:none) Onion yellows phytoplasma OY-M D...    33   2.4
A90131(A90131) hypothetical protein kin(aaB) [imported] - Guilla...    33   3.1
CP000883_115(CP000883|pid:none) Hemiselmis andersenii chromosome...    33   3.1
CP000698_3128(CP000698|pid:none) Geobacter uraniireducens Rf4, c...    33   4.1
CP000923_1792(CP000923|pid:none) Thermoanaerobacter sp. X514, co...    32   5.3
CR382401_38(CR382401|pid:none) Plasmodium falciparum chromosome ...    28   5.6
AL844505_292(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    28   5.6
AL844509_404(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    32   6.9
CP000882_131(CP000882|pid:none) Hemiselmis andersenii chromosome...    32   6.9
CP000395_406(CP000395|pid:none) Borrelia afzelii PKo, complete g...    32   6.9
AM180355_2528(AM180355|pid:none) Clostridium difficile 630 compl...    32   6.9
AL844509_669(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    32   6.9
CP001108_1415(CP001108|pid:none) Prosthecochloris aestuarii DSM ...    32   9.1
AE014188_479(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    32   9.1
AE004969_594(AE004969|pid:none) Neisseria gonorrhoeae FA 1090, c...    32   9.1
CP000013_818(CP000013|pid:none) Borrelia garinii PBi, complete g...    32   9.1
CP001050_1274(CP001050|pid:none) Neisseria gonorrhoeae NCCP11945...    32   9.1
CP001078_2878(CP001078|pid:none) Clostridium botulinum E3 str. A...    32   9.1
CP000962_2427(CP000962|pid:none) Clostridium botulinum A3 str. L...    32   9.1

>AL844509_52(AL844509|pid:none) Plasmodium falciparum 3D7 chromosome
           13.
          Length = 3525

 Score = 37.4 bits (85), Expect = 0.17
 Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 21/153 (13%)
 Frame = +1

Query: 7   ECNENEKINFIIKLLDFYYEYSSLEGISAF---YGLLLLKDNKIQQ---EDFNRLLFIN- 165
           ECNEN K    I + + Y  Y  +E IS F   YG  LL D K +    E+F  L F N
Sbjct: 227 ECNENLKYFVSIFINETYRSYLIIECISLFLYTYG-HLLNDEKYKMICIENFENLFFQNL 285

Query: 166 EKTDLIFSLRF-----------GNFDLFKITYSTFEKYREEITQNWRFLILFQFEKNKAN 312
             T+    ++F            N ++F +    + +Y E    N   L  + + K+  N
Sbjct: 286 LNTNKNIPIKFIKCFKYIFEHTRNENIFDLILKQYNRYDEIALIN--SLSFYYYNKDLFN 343

Query: 313 QISF---IDKVCNFLIYSKNEKFIDFGFNNFLF 402
           +I F   +D V N +   + EK ID   NN ++
Sbjct: 344 KIHFYKLLDIVIN-IKKKEKEKNIDDSVNNMIY 375

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 535,033,676
Number of extensions: 10279806
Number of successful extensions: 27579
Number of sequences better than 10.0: 31
Number of HSP's gapped: 27558
Number of HSP's successfully gapped: 33
Length of query: 149
Length of database: 1,040,966,779
Length adjustment: 111
Effective length of query: 38
Effective length of database: 685,291,144
Effective search space: 26041063472
Effective search space used: 26041063472
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)

 psg: 0.75  gvh: 0.40  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: cytoplasmic
	 24.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U06829-1 is cyt