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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U06814-1
Contig ID Contig-U06814-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U06814-1 (Contig-U06814-1Q) /CSM_Contig/Contig-U06814-1Q.Seq.d
TTCAATTTGAGTATTTTTATTTAATTATTCATTTCATTTTTTTATTCACT
CATCCAATAAAATAACATATAATTATATATAACATATATCTAAACATATT
TTTTTATTTTTGTAAATTATTATTTTTTTTATTTTTTTTTATTTTTTATT
TTTTTGNGAACCAAAATTTAAAATAATGAATCTTTTTTATTTGGATTTAG
TTGCAGCTACAAGTGCAAGATATCATAATGATAAACATGTTGTAAAATTA
ATTTTAGAAGCAACTCAACTATTGTATAGTACATGGCATTTAATGGAACC
ATCTTCGGATTGGAAATTAAAAGCACCAAATCCAATGAAACTAACACATA
CCAATCACCCACTAACCAAATGGGTGAGAACCAATAACAAGACCTACGAT
ATTGTCTCTGACTA
Gap no gap
Contig length 414
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 4325369
End point 4324955
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U06814
List of clone(s) 

est1=VSG570F,1,415
Translated Amino Acid sequence 
si*vflfnysfhffihssnkitynyi*hiskhiflfl*IIIFFIFFYFLFFXEPKFKIMN
LFYLDLVAATSARYHNDKHVVKLILEATQLLYSTWHLMEPSSDWKLKAPNPMKLTHTNHP
LTKWVRTNNKTYDIVSD
Translated Amino Acid sequence (All Frames) 
Frame A:
fnlsifi*lfisffysliq*nni*lyityi*tyffifvnyyffyfflffiflxtki*nne
sflfgfscsykckis***tcckinfrsnstiv*ymafngtifgleikstksnetntyqsp
tnqmgenq*qdlrycl*l


Frame B:
si*vflfnysfhffihssnkitynyi*hiskhiflfl*IIIFFIFFYFLFFXEPKFKIMN
LFYLDLVAATSARYHNDKHVVKLILEATQLLYSTWHLMEPSSDWKLKAPNPMKLTHTNHP
LTKWVRTNNKTYDIVSD


Frame C:
qfeyfyliihfiflfthpik*hiiiyniylniffyfckllfflfffifyffxnqnlk**i
ffiwi*lqlqvqdiiminml*n*f*kqlnycivhgi*wnhlrign*khqiq*n*hipith
*png*epitrptilslt
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06814-1 (Contig-U06814-1Q)
/CSM_Contig/Contig-U06814-1Q.Seq.d
         (414 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06814-1 (Contig-U06814-1Q) /CSM_Contig/Conti...   509  e-145
Contig-U01957-1 (Contig-U01957-1Q) /CSM_Contig/Conti...    42  5e-04
Contig-U14504-1 (Contig-U14504-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U12913-1 (Contig-U12913-1Q) /CSM_Contig/Conti...    36  0.029
Contig-U12370-1 (Contig-U12370-1Q) /CSM_Contig/Conti...    36  0.029
Contig-U12577-1 (Contig-U12577-1Q) /CSM_Contig/Conti...    34  0.11
Contig-U11803-1 (Contig-U11803-1Q) /CSM_Contig/Conti...    34  0.11
Contig-U11486-1 (Contig-U11486-1Q) /CSM_Contig/Conti...    34  0.11
Contig-U10902-1 (Contig-U10902-1Q) /CSM_Contig/Conti...    34  0.11
Contig-U10343-1 (Contig-U10343-1Q) /CSM_Contig/Conti...    34  0.11

>Contig-U06814-1 (Contig-U06814-1Q) /CSM_Contig/Contig-U06814-1Q.Seq.d
          Length = 414

 Score =  509 bits (257), Expect = e-145
 Identities = 257/257 (100%)
 Strand = Plus / Plus

                                                                       
Query: 158 gaaccaaaatttaaaataatgaatcttttttatttggatttagttgcagctacaagtgca 217
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 gaaccaaaatttaaaataatgaatcttttttatttggatttagttgcagctacaagtgca 217

                                                                       
Query: 218 agatatcataatgataaacatgttgtaaaattaattttagaagcaactcaactattgtat 277
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 agatatcataatgataaacatgttgtaaaattaattttagaagcaactcaactattgtat 277

                                                                       
Query: 278 agtacatggcatttaatggaaccatcttcggattggaaattaaaagcaccaaatccaatg 337
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 agtacatggcatttaatggaaccatcttcggattggaaattaaaagcaccaaatccaatg 337

                                                                       
Query: 338 aaactaacacataccaatcacccactaaccaaatgggtgagaaccaataacaagacctac 397
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aaactaacacataccaatcacccactaaccaaatgggtgagaaccaataacaagacctac 397

                            
Query: 398 gatattgtctctgacta 414
           |||||||||||||||||
Sbjct: 398 gatattgtctctgacta 414


 Score =  107 bits (54), Expect = 9e-24
 Identities = 54/54 (100%)
 Strand = Plus / Plus

                                                                
Query: 44 attcactcatccaataaaataacatataattatatataacatatatctaaacat 97
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 attcactcatccaataaaataacatataattatatataacatatatctaaacat 97


 Score = 28.2 bits (14), Expect = 7.0
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 243 taaaattaatttta 256
           ||||||||||||||
Sbjct: 256 taaaattaatttta 243


>Contig-U01957-1 (Contig-U01957-1Q) /CSM_Contig/Contig-U01957-1Q.Seq.d
          Length = 1203

 Score = 42.1 bits (21), Expect = 5e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 64  aacatataattatatataacatata 88
           ||||||||||||||||||| |||||
Sbjct: 234 aacatataattatatataatatata 258


>Contig-U14504-1 (Contig-U14504-1Q) /CSM_Contig/Contig-U14504-1Q.Seq.d
          Length = 588

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 68  tataattatatataacatat 87
           ||||||||||||||||||||
Sbjct: 239 tataattatatataacatat 220


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5864
Number of Sequences: 6905
Number of extensions: 5864
Number of successful extensions: 709
Number of sequences better than 10.0: 218
length of query: 414
length of database: 5,674,871
effective HSP length: 16
effective length of query: 398
effective length of database: 5,564,391
effective search space: 2214627618
effective search space used: 2214627618
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11.10
Homology vs DNA 
Query= Contig-U06814-1 (Contig-U06814-1Q) /CSM_Contig/Contig-U06814-1Q.Seq.d
         (414 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU266632) Dictyostelium discoideum vegetative cDNA clone:VS...   509   e-162  2
(EK577972) 1095521371884 Global-Ocean-Sampling_GS-32-01-01-1...    60   6e-05  1
(EK449327) 1095467065965 Global-Ocean-Sampling_GS-32-01-01-1...    60   6e-05  1
(AC154298) Mus musculus BAC clone RP23-399K17 from chromosom...    56   0.001  1
(BX927204) Zebrafish DNA sequence from clone CH211-103B12 in...    54   0.004  1
(AC206936) Solanum tuberosum chromosome 6 clone RHPOTKEY102I...    54   0.004  1
(AC027721) Homo sapiens clone RP11-673K2, WORKING DRAFT SEQU...    46   0.009  4
(AC126589) Rattus norvegicus clone CH230-121A13, WORKING DRA...    52   0.016  1
(AC121173) Rattus norvegicus clone CH230-486I4, WORKING DRAF...    52   0.016  1
(DU347810) 1098313120742 CHORI-243 Ovis aries genomic clone ...    52   0.016  1
(DE902873) Macropus eugenii DNA, BAC clone: MEB1-083J11_R, 3...    52   0.016  1
(AC020721) Homo sapiens chromosome 11 clone RP11-485A16, WOR...    34   0.040  2
(AP002350) Homo sapiens genomic DNA, chromosome 11q, clone:C...    34   0.040  2
(AL157783) Human DNA sequence from clone RP11-134A8 on chrom...    48   0.054  3
(AC192167) Pan troglodytes BAC clone CH251-448I11 from chrom...    50   0.062  1
(AC114234) Rattus norvegicus clone CH230-334J13, WORKING DRA...    50   0.062  1
(AQ051015) nbxb0004dF12r CUGI Rice BAC Library Oryza sativa ...    50   0.062  1
(DH628389) Rattus norvegicus DNA, BAC clone: RNB1-163L05, 5'...    50   0.062  1
(DH602797) Rattus norvegicus DNA, BAC clone: RNB1-129F03, 5'...    50   0.062  1
(AL844507) Plasmodium falciparum chromosome 8.                     40   0.084  10
(AC154050) Drosophila melanogaster clone BACR22M24, complete...    40   0.13   3
(AP002356) Homo sapiens genomic DNA, chromosome 11q clone:CT...    34   0.15   2
(AC018653) Homo sapiens 12 BAC RP11-273B20 (Roswell Park Can...    36   0.15   2
(AC107976) Homo sapiens chromosome 15, clone CTD-2576F9, com...    48   0.20   2
(AC132220) Homo sapiens chromosome 15, clone RP11-1142D4, co...    48   0.24   2
(AL807745) Mouse DNA sequence from clone RP23-20E10 on chrom...    48   0.25   1
(AC110237) Mus musculus chromosome 5, clone RP23-104B24, com...    48   0.25   1
(AC192133) Pan troglodytes BAC clone CH251-596M17 from chrom...    48   0.25   1
(CR942276) Human DNA sequence from clone XX-NCIH2171_5AM21.        48   0.25   1
(AC134661) Homo sapiens chromosome 15, clone CTD-3098H5, com...    48   0.25   1
(AC087259) Homo sapiens 12p BAC RP11-387J7 (Roswell Park Can...    48   0.25   1
(AC080129) Homo sapiens 3 BAC RP11-135A1 (Roswell Park Cance...    48   0.25   1
(AC073504) Homo sapiens 12 BAC RP11-6C16 (Roswell Park Cance...    48   0.25   1
(AC022308) Homo sapiens chromosome 15 clone RP11-34L4, compl...    48   0.25   1
(AC068839) Homo sapiens chromosome 3 clone RP11-617C11 map 3...    48   0.25   1
(CU571293) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.25   1
(CT997805) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.25   1
(AL591118) Human DNA sequence *** SEQUENCING IN PROGRESS ***...    48   0.25   1
(AC192943) Pan troglodytes chromosome X clone CH251-22C1, WO...    48   0.25   1
(AC021211) Homo sapiens chromosome 17 clone RP11-407E4, WORK...    48   0.25   1
(AC017059) Homo sapiens chromosome 15 clone RP11-345N23, WOR...    48   0.25   1
(CR270276) Forward strand read from insert in 5'HPRT inserti...    48   0.25   1
(AC021639) Drosophila melanogaster, chromosome X, region 12E...    40   0.29   4
(AC145906) Pan troglodytes BAC clone RP43-9J5 from chromosom...    46   0.31   2
(AC192725) Pan troglodytes BAC clone CH251-620N22 from chrom...    46   0.31   2
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1...    36   0.34   4
(AL035476) Plasmodium falciparum MAL4P3.                           32   0.51   2
(AC094892) Rattus norvegicus clone CH230-6B9, WORKING DRAFT ...    36   0.52   2
(AL157402) Human DNA sequence from clone RP11-553K8 on chrom...    34   0.53   2
(AC170332) Bos taurus clone CH240-260B8, WORKING DRAFT SEQUE...    34   0.53   2
(AC126102) Rattus norvegicus clone CH230-337F7, WORKING DRAF...    36   0.53   2
(AC123982) Pan troglodytes clone rp43-39b11, complete sequence.    32   0.53   2
(CQ869722) Sequence 143 from Patent WO2004074320.                  34   0.54   2
(AC109637) Homo sapiens BAC clone RP11-325A18 from 2, comple...    34   0.60   2
(DJ051139) HIGH EFFICIENCY GENE TRANSFER AND EXPRESSION IN M...    34   0.65   2
(DI107068) HIGH EFFICIENCY GENE TRANSFER AND EXPRESSION IN M...    34   0.65   2
(CS083997) Sequence 180 from Patent WO2005040377.                  34   0.65   2
(CU695328) Brassica rapa subsp. pekinensis clone KBrH122L21,...    38   0.68   2
(BB902242) Macaca fascicularis cDNA clone: Qlv-UG5, 3'end, S...    42   0.69   2
(CR744583) RZPD Homo sapiens cDNA clone IMAGp998M174005 = IM...    34   0.70   2
(B54043) CIT-HSP-2014H3.TR CIT-HSP Homo sapiens genomic clon...    34   0.71   2
(AA997692) UI-R-C0-hp-e-09-0-UI.s1 UI-R-C0 Rattus norvegicus...    36   0.71   2
(AQ054433) CIT-HSP-2340I17.TR CIT-HSP Homo sapiens genomic c...    34   0.72   2
(AC188450) Gallus gallus BAC clone CH261-177N9 from chromoso...    36   0.77   4
(AC173108) Bos taurus clone CH240-130J9, WORKING DRAFT SEQUE...    38   0.92   3
(BX544883) Mouse DNA sequence from clone RP23-302B23 on chro...    46   0.97   1
(CU695245) Pan troglodytes chromosome X clone CH251-245A11 m...    46   0.97   1
(CT025638) Pan troglodytes chromosome X clone PTB-083N09 map...    46   0.97   1
(AC192111) Pan troglodytes BAC clone CH251-726H14 from chrom...    46   0.97   1
(AC188432) Pan troglodytes BAC clone CH251-676M19 from chrom...    46   0.97   1
(AC187538) Solanum lycopersicum cv. Heinz 1706, chromosome 5...    46   0.97   1
(AP002965) Homo sapiens genomic DNA, chromosome 11 clone:RP1...    46   0.97   1
(AL590378) Human DNA sequence from clone RP11-49L2 on chromo...    46   0.97   1
(AL139342) Human DNA sequence from clone RP5-1016N21 on chro...    46   0.97   1
(AL096792) Human DNA sequence from clone RP5-1067P23 on chro...    46   0.97   1
(AL034406) Human DNA sequence from clone RP4-571B2 on chromo...    46   0.97   1
(AC129352) Homo sapiens X BAC CTD-2225F20 (Cal Tech Human BA...    46   0.97   1
(AC103693) Homo sapiens chromosome 18, clone CTD-2522C24, co...    46   0.97   1
(AC098862) Homo sapiens BAC clone RP11-339D20 from 4, comple...    46   0.97   1
(AC093301) Homo sapiens chromosome 5 clone RP11-565F4, compl...    46   0.97   1
(AC091825) Homo sapiens chromosome 5 clone CTC-463A16, compl...    46   0.97   1
(AC011266) Homo sapiens chromosome 18, clone RP11-5A1, compl...    46   0.97   1
(AC008245) Homo sapiens chromosome 18, clone RP11-146N18, co...    46   0.97   1
(AC141201) Rattus norvegicus clone CH230-390B4, WORKING DRAF...    46   0.97   1
(AC134252) Mus musculus chromosome UNK clone RP23-453G5, WOR...    46   0.97   1
(AC114345) Rattus norvegicus clone CH230-189N15, *** SEQUENC...    46   0.97   1
(AC111893) Rattus norvegicus clone CH230-53E20, *** SEQUENCI...    46   0.97   1
(AC091030) Homo sapiens chromosome 18 clone CTD-2522C24 map ...    46   0.97   1
(AC229852) Microcebus murinus clone 34784157_K_19, *** SEQUE...    46   0.97   1
(AC222612) Bos taurus clone CH240-444C17, WORKING DRAFT SEQU...    46   0.97   1
(AC167451) Bos taurus clone CH240-197J13, WORKING DRAFT SEQU...    46   0.97   1
(AC022159) Homo sapiens chromosome 10 clone RP11-103D22, WOR...    46   0.97   1
(AC016890) Homo sapiens chromosome 4 clone RP11-565J22 map 4...    46   0.97   1
(AC012620) Homo sapiens chromosome 5 clone CTD-2025F11, LOW-...    46   0.97   1
(BH563731) BOHLW77TR BOHL Brassica oleracea genomic clone BO...    46   0.97   1
(ET036092) MUGQ_CH252P339O12Sp6_CP629_034 CHORI-252 Vervet M...    46   0.97   1
(EI726941) 2B421024H08TF BAC library from breast tumor sampl...    46   0.97   1
(ED855404) OA_CBa0025H02.r OA_CBa Oryza australiensis genomi...    46   0.97   1
(ED015205) MUGQ_CH252P103F24Sp6_CN41_044 CHORI-252 Vervet Mo...    46   0.97   1
(DX565724) MUGQ_CH252P041E11Sp6_AV893_044 CHORI-252 Vervet M...    46   0.97   1

>(AU266632) Dictyostelium discoideum vegetative cDNA clone:VSG570,
           5' end single read.
          Length = 415

 Score =  509 bits (257), Expect(2) = e-162
 Identities = 257/257 (100%)
 Strand = Plus / Plus


Query: 158 gaaccaaaatttaaaataatgaatcttttttatttggatttagttgcagctacaagtgca 217
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 gaaccaaaatttaaaataatgaatcttttttatttggatttagttgcagctacaagtgca 217


Query: 218 agatatcataatgataaacatgttgtaaaattaattttagaagcaactcaactattgtat 277
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 agatatcataatgataaacatgttgtaaaattaattttagaagcaactcaactattgtat 277


Query: 278 agtacatggcatttaatggaaccatcttcggattggaaattaaaagcaccaaatccaatg 337
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 agtacatggcatttaatggaaccatcttcggattggaaattaaaagcaccaaatccaatg 337


Query: 338 aaactaacacataccaatcacccactaaccaaatgggtgagaaccaataacaagacctac 397
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aaactaacacataccaatcacccactaaccaaatgggtgagaaccaataacaagacctac 397


Query: 398 gatattgtctctgacta 414
           |||||||||||||||||
Sbjct: 398 gatattgtctctgacta 414

 Score = 99.6 bits (50), Expect(2) = e-162
 Identities = 50/50 (100%)
 Strand = Plus / Plus


Query: 47 cactcatccaataaaataacatataattatatataacatatatctaaaca 96
          ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47 cactcatccaataaaataacatataattatatataacatatatctaaaca 96

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 430,216,435
Number of extensions: 28053228
Number of successful extensions: 2610171
Number of sequences better than 10.0: 307
Length of query: 414
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 391
Effective length of database: 93,106,754,628
Effective search space: 36404741059548
Effective search space used: 36404741059548
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 6.22
Homology vs Protein 
Query= Contig-U06814-1 (Contig-U06814-1Q) /CSM_Contig/Contig-U06814-1Q.Seq.d
         (414 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM999887_1043(AM999887|pid:none) Wolbachia endosymbiont of Culex...    56   4e-07
CP000510_2383(CP000510|pid:none) Psychromonas ingrahamii 37, com...    54   2e-06
CP000745_498(CP000745|pid:none) Methanococcus maripaludis C7, co...    52   5e-06
AP007255_3628(AP007255|pid:none) Magnetospirillum magneticum AMB...    52   8e-06
CP001391_300(CP001391|pid:none) Wolbachia sp. wRi, complete geno...    52   8e-06
CP000859_853(CP000859|pid:none) Desulfococcus oleovorans Hxd3, c...    51   1e-05
CP000609_334(CP000609|pid:none) Methanococcus maripaludis C5, co...    51   1e-05
BX950229_1256(BX950229|pid:none) Methanococcus maripaludis strai...    50   2e-05
AP008981_1175(AP008981|pid:none) Orientia tsutsugamushi str. Ike...    50   2e-05
AM494475_1771(AM494475|pid:none) Orientia tsutsugamushi Boryong ...    50   2e-05
AY986977_47(AY986977|pid:none) Xanthomonas campestris pv. pelarg...    49   5e-05
AB366653_65(AB366653|pid:none) Ralstonia phage RSL1 DNA, complet...    35   0.81
CP000498_427(CP000498|pid:none) Pichia stipitis CBS 6054 chromos...    32   5.3
CP000502_86(CP000502|pid:none) Pichia stipitis CBS 6054 chromoso...    32   5.3
(O13801) RecName: Full=Uncharacterized RNA-binding protein C17H9...    32   6.9
BX248357_137(BX248357|pid:none) Corynebacterium diphtheriae grav...    32   9.0

>AM999887_1043(AM999887|pid:none) Wolbachia endosymbiont of Culex
           quinquefasciatus Pel strain wPip complete genome.
          Length = 173

 Score = 55.8 bits (133), Expect = 4e-07
 Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
 Frame = +2

Query: 176 MNLFYLDLVAATSARYHNDKHVVKLILEATQLLYSTWH--LMEPSSDWKLKAPN---PMK 340
           MN+F LD    T+A+   DKH+VK+ LE  QLL S +   L EP+    +   N   P K
Sbjct: 1   MNIFILDENPVTAAQMLCDKHIVKMPLETAQLLSSVFSIALKEPNPLVSITNQNIEVPYK 60

Query: 341 LTHTNHPLTKWVRTNNKTYD 400
           LTH NHP + W R +   +D
Sbjct: 61  LTHKNHPCSLWARQSKGNFD 80

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 524,676,382
Number of extensions: 9333691
Number of successful extensions: 17544
Number of sequences better than 10.0: 16
Number of HSP's gapped: 17533
Number of HSP's successfully gapped: 16
Length of query: 138
Length of database: 1,040,966,779
Length adjustment: 102
Effective length of query: 36
Effective length of database: 714,129,709
Effective search space: 25708669524
Effective search space used: 25708669524
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)
PSORT 

 psg: 1.04  gvh: 0.62  alm: 0.32  top: 0.47  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U06814-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0