| Contig-U06789-1 |
| Contig ID |
Contig-U06789-1 |
| Contig update |
2001. 8.30 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
154 |
| Chromosome number (1..6, M) |
1 |
| Chromosome length |
4919822 |
| Start point |
1510032 |
| End point |
1510186 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
1 |
| Number of EST |
1 |
| Link to clone list |
U06789 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11. 9 |
| Homology vs DNA |
Query= Contig-U06789-1 (Contig-U06789-1Q) /CSM_Contig/Contig-U06789-1Q.Seq.d
(154 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AU266218) Dictyostelium discoideum vegetative cDNA clone:VS... 117 1e-27 2
(AE017261) Picrophilus torridus DSM 9790, complete genome. 48 0.083 1
(CR450745) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 0.12 3
(AC175251) Bos taurus clone CH240-146M23, *** SEQUENCING IN ... 34 0.19 2
(CZ928222) 245128 Tomato EcoRI BAC Library Solanum lycopersi... 36 0.19 2
(ES402220) MUT07-F05.y1d-s SHGC-MUT Mytilus californianus cD... 36 0.23 2
(AC169501) Mus musculus BAC clone RP24-445O18 from chromosom... 46 0.33 1
(AC131712) Mus musculus BAC clone RP23-193A5 from 17, comple... 46 0.33 1
(Z98753) Human DNA sequence from clone RP1-238J17 on chromos... 46 0.33 1
(AC155015) Bos taurus clone CH240-35H22, WORKING DRAFT SEQUE... 46 0.33 1
(AC101555) Mus musculus clone RP23-194B16, LOW-PASS SEQUENCE... 46 0.33 1
(AC173333) Bos taurus clone CH240-192C11, *** SEQUENCING IN ... 46 0.33 1
(AQ503613) RPCI-11-282C5.TJ RPCI-11 Homo sapiens genomic clo... 46 0.33 1
(EI398674) MUGQ_CH252P214I05T7_CN343_023 CHORI-252 Vervet Mo... 46 0.33 1
(AM608338) Entamoeba invadens IP1 GSS, clone inv087g04.p1k. 42 0.55 2
(DD010735) Diagnosis of known genetic Parameters within the ... 44 0.58 2
(AX344560) Sequence 11 from Patent WO0200932. 34 0.67 2
(AX344559) Sequence 10 from Patent WO0200932. 34 0.67 2
(EK120014) 1092963353322 Global-Ocean-Sampling_GS-31-01-01-1... 38 0.69 2
(EK127397) 1092991100350 Global-Ocean-Sampling_GS-31-01-01-1... 38 0.74 2
(AC129296) Mus musculus BAC clone RP24-574O8 from chromosome... 44 1.3 1
(DD010736) Diagnosis of known genetic Parameters within the ... 44 1.3 1
(AX344566) Sequence 17 from Patent WO0200932. 44 1.3 1
(AX344552) Sequence 3 from Patent WO0200932. 44 1.3 1
(EU518937) Homo sapiens NEL-like 1 (chicken) (NELL1) gene, c... 44 1.3 1
(AC105190) Homo sapiens chromosome 11, clone RP11-116O9, com... 44 1.3 1
(AC152574) Bos taurus clone CH240-13C16, *** SEQUENCING IN P... 44 1.3 1
(AC091380) Mus musculus strain C57BL6/J clone RP23-41D4, WOR... 44 1.3 1
(AC169354) Bos taurus clone CH240-199E2, WORKING DRAFT SEQUE... 44 1.3 1
(ET110638) QM0AAC19BC05RM2 CCH3 Citrus clementina genomic cl... 44 1.3 1
(DU838225) MUGQ_CH252P013I23T7_GL276_088 CHORI-252 Vervet Mo... 34 2.0 2
(AL844509) Plasmodium falciparum chromosome 13. 32 2.1 2
(CP000814) Campylobacter jejuni subsp. jejuni 81116, complet... 34 2.2 2
(AL049185) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 32 2.4 2
(FH614141) CHO_OF4534xp16r1.ab1 CHO_OF4 Nicotiana tabacum ge... 40 2.5 2
(AC096397) Rattus norvegicus clone CH230-44O15, WORKING DRAF... 32 2.5 2
(AC118409) Rattus norvegicus clone CH230-213P5, *** SEQUENCI... 32 2.5 2
(AC138177) Mus musculus chromosome 15, clone RP23-32P19, com... 32 2.6 2
(AC187466) Medicago truncatula chromosome 2 BAC clone mth2-6... 34 2.6 2
(AC125390) Medicago truncatula clone mth2-17c11, complete se... 34 2.6 2
(CU694451) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 32 2.6 2
(CT963086) Zebrafish DNA sequence from clone CH73-77D24 in l... 36 3.1 2
(FG605755) stem_S001_H01.SEQ Opium poppy stem cDNA library P... 40 3.2 2
(BZ145777) CH230-462N14.TJ CHORI-230 Segment 2 Rattus norveg... 32 3.4 2
(EJ616882) 1092963025000 Global-Ocean-Sampling_GS-29-01-01-1... 34 3.4 2
(FG610160) stem_S057_B10.SEQ Opium poppy stem cDNA library P... 40 3.4 2
(EJ634176) 1092973600729 Global-Ocean-Sampling_GS-29-01-01-1... 34 3.4 2
(AV303328) Mus musculus 8 days embryo cDNA, RIKEN full-lengt... 34 3.6 2
(ET712836) CHO_OF037xe05f1.ab1 CHO_OF Nicotiana tabacum geno... 34 3.9 2
(AW335212) S44E8 AGS-1 Pneumocystis carinii cDNA 3', mRNA se... 34 4.7 2
(CU682352) Zebrafish DNA sequence from clone CH1073-264G23. 42 5.1 1
(CU462845) Zebrafish DNA sequence from clone CH73-139E5 in l... 42 5.1 1
(CT990606) Zebrafish DNA sequence from clone CH211-271L9 in ... 42 5.1 1
(CR812468) Zebrafish DNA sequence from clone CH211-252P18 in... 42 5.1 1
(BX927242) Zebrafish DNA sequence from clone CH211-195H1 in ... 42 5.1 1
(BX927098) Zebrafish DNA sequence from clone DKEY-228D14 in ... 42 5.1 1
(BX510912) Zebrafish DNA sequence from clone CH211-18J22 in ... 42 5.1 1
(BX005458) Zebrafish DNA sequence from clone CH211-173L10 in... 42 5.1 1
(BX005044) Zebrafish DNA sequence from clone DKEY-7L6 in lin... 42 5.1 1
(BV346756) S230P6452FB5.T0 Rottweiler Canis familiaris STS g... 42 5.1 1
(AC157597) Mus musculus BAC clone RP23-231O9 from chromosome... 42 5.1 1
(AC134599) Mus musculus BAC clone RP23-192O14 from 12, compl... 42 5.1 1
(AC106841) Mus musculus chromosome 1, clone RP24-554B1, comp... 42 5.1 1
(AC087799) Mus musculus strain C57BL/6J chromosome 16 clone ... 42 5.1 1
(AC161009) Pan troglodytes BAC clone CH251-560O18 from chrom... 42 5.1 1
(CS623684) Sequence 235 from Patent WO2006071466. 42 5.1 1
(CS623556) Sequence 107 from Patent WO2006071466. 42 5.1 1
(CS604688) Sequence 3674 from Patent WO2007039234. 42 5.1 1
(CS603864) Sequence 2850 from Patent WO2007039234. 42 5.1 1
(CS502571) Sequence 571 from Patent WO2007009755. 42 5.1 1
(CQ587597) Sequence 15355 from Patent WO0171042. 42 5.1 1
(BD460218) Diagnosis of Diseases Associated with Cell Cycle. 42 5.1 1
(BD452140) Diagnosis of Diseases Associated with Cell Cycle. 42 5.1 1
(AX348939) Sequence 397 from Patent WO0202807. 42 5.1 1
(AX346014) Sequence 1085 from Patent WO0200928. 42 5.1 1
(AX344573) Sequence 24 from Patent WO0200932. 42 5.1 1
(AX344168) Sequence 15 from Patent WO0200926. 42 5.1 1
(AX251754) Sequence 15 from Patent WO0168911. 42 5.1 1
(EF488234) Sus scrofa adenylate kinase 3-like 1 (AK3L1) gene... 42 5.1 1
(CR382401) Plasmodium falciparum chromosome 6, complete sequ... 42 5.1 1
(AE014296) Drosophila melanogaster chromosome 3L, complete s... 42 5.1 1
(AC091209) Drosophila melanogaster 3L BAC RP98-3G6 (Roswell ... 42 5.1 1
(AC010071) Drosophila melanogaster 3L BAC RP98-18G16 (Roswel... 42 5.1 1
(AL353707) Human DNA sequence from clone RP11-553J6 on chrom... 42 5.1 1
(AC011997) Homo sapiens BAC clone RP11-294E24 from 2, comple... 42 5.1 1
(AC123775) Homo sapiens chromosome 8 clone RP11-14F14 map 8,... 42 5.1 1
(CU928539) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 5.1 1
(CU914402) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 5.1 1
(CU550653) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 5.1 1
(CU459217) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 5.1 1
(AC222968) Bos taurus clone CH240-433G17, WORKING DRAFT SEQU... 42 5.1 1
(AC222964) Bos taurus clone CH240-433E9, WORKING DRAFT SEQUE... 42 5.1 1
(AC202659) Spermophilus tridecemlineatus clone VMRC20-239H7,... 42 5.1 1
(AC202614) Macaca mulatta clone CH250-3K6, WORKING DRAFT SEQ... 42 5.1 1
(AC189389) Brassica rapa subsp. pekinensis clone KBrB053J19,... 42 5.1 1
(AC181952) Strongylocentrotus purpuratus clone R3-1006F09, W... 42 5.1 1
(AC175036) Bos taurus clone CH240-460I23, WORKING DRAFT SEQU... 42 5.1 1
(AC167791) Bos taurus clone CH240-212G21, WORKING DRAFT SEQU... 42 5.1 1
(AC164391) Bos taurus clone CH240-132H16, WORKING DRAFT SEQU... 42 5.1 1
(AC019850) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 42 5.1 1
>(AU266218) Dictyostelium discoideum vegetative cDNA clone:VSG263,
5' end single read.
Length = 155
Score = 117 bits (59), Expect(2) = 1e-27
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 1 aaattatttgaagttttatatttatatttttgatggaatatcacaataattatacaagt 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaattatttgaagttttatatttatatttttgatggaatatcacaataattatacaagt 59
Score = 36.2 bits (18), Expect(2) = 1e-27
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 89 ccaaacatcgattaaaca 106
||||||||||||||||||
Sbjct: 89 ccaaacatcgattaaaca 106
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 113,990,172
Number of extensions: 9164523
Number of successful extensions: 2983021
Number of sequences better than 10.0: 144
Length of query: 154
Length of database: 95,242,211,685
Length adjustment: 22
Effective length of query: 132
Effective length of database: 93,199,600,587
Effective search space: 12302347277484
Effective search space used: 12302347277484
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
|
| protein update |
2009. 6.22 |
| Homology vs Protein |
|
| PSORT |
|
| VS (DIR, S) |
1 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |