Contig-U06783-1
Contig ID Contig-U06783-1
Contig update 2001. 8.30
Contig sequence
>Contig-U06783-1 (Contig-U06783-1Q) /CSM_Contig/Contig-U06783-1Q.Seq.d
CCATGCGTCCGATTAAATCTCATTAATAGATCAAAGAGATTAAATATTCA
AAATTTTTCAAAAGTAACAACAACAAACTTAATATTGAGGAATAGTATAA
ATAATAGTATAATTTTCCCCCCCTCAAATAATGATAATTCAATATTATCA
TTAAATTACTCAACATCAACAACAAGAACCAAAAGAAAAGATAATCCAGT
TGATAATAATAATAAAAGAATTGGAACGATTAAAAGACCAATATTTAAAA
CATATTCAGAAAGACATGAACCAAAATTAAAGAATGATTTTAAAGAATTT
GGTTTAAGTAATGAATTGATTGAATCAATTAAAGAGAATAATTGGGAAAA
ACCAACAGATGTTCAAAAACAAGTTATACCATTAATATTTAAAGGTAGAA
ATACAGTTTTCTCATCAGTTACAGGTAGTGGTAAAACTGGTGCTTACCTC
TTACCTTTTATACAAATTTTAACAACTTTTAAAAGAAATAAATTAAATTA
TTTAAAAAAACAAAAACAAGACAAAGAGAATGGCCAAATTGAAAATGAAT
TTGATGAAAATTATGAATTATTTAATGAAGAAGATTATGGTGATAAACCA
TTNAAAAGAAAATTGTAAAAAATAATAAATTTAAAAAAGAAAAATTNAAA
AATTGAAGAAG

Gap no gap
Contig length 661
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 1184776
End point 1184123
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U06783
List of clone(s)

est1=VSG228Z,1,662
est2=VSG228F,12,511
Translated Amino Acid sequence
PCVRLNLINRSKRLNIQNFSKVTTTNLILRNSINNSIIFPPSNNDNSILSLNYSTSTTRT
KRKDNPVDNNNKRIGTIKRPIFKTYSERHEPKLKNDFKEFGLSNELIESIKENNWEKPTD
VQKQVIPLIFKGRNTVFSSVTGSGKTGAYLLPFIQILTTFKRNKLNYLKKQKQDKENGQI
ENEFDENYELFNEEDYGDKPXKRKL*kiinlkkknxkiee


Translated Amino Acid sequence (All Frames)
Frame A:
PCVRLNLINRSKRLNIQNFSKVTTTNLILRNSINNSIIFPPSNNDNSILSLNYSTSTTRT
KRKDNPVDNNNKRIGTIKRPIFKTYSERHEPKLKNDFKEFGLSNELIESIKENNWEKPTD
VQKQVIPLIFKGRNTVFSSVTGSGKTGAYLLPFIQILTTFKRNKLNYLKKQKQDKENGQI
ENEFDENYELFNEEDYGDKPXKRKL*kiinlkkknxkiee


Frame B:
hasd*islidqrd*ifkifqk*qqqt*y*giv*iiv*fsppqimiiqyyh*itqhqqqep
kekiiqliiiikelerlkdqylkhiqkdmnqn*rmilknlv*vmn*lnqlkriigknqqm
fknklyh*ylkveiqfshqlqvvvklvltsyllykf*qllkein*ii*knknktkrmakl
kmnlmkimnylmkkimvinhxkenckk**i*krkixklkk


Frame C:
mrpiksh**ikeikyskffksnnnklniee*yk**ynfpplk***fniiikllninnknq
kkr*ss*****knwnd*ktni*nifrkt*tkike*f*riwfk**id*in*re*lgktnrc
sktsytini*r*kysflisyr*w*nwclpltfytnfnnf*kk*iklfkktktrqrewpn*
k*i**kl*ii**rrlw**tixkkivknnkfkkekxkn*r


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U06783-1 (Contig-U06783-1Q)
/CSM_Contig/Contig-U06783-1Q.Seq.d
(661 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U06783-1 (Contig-U06783-1Q) /CSM_Contig/Conti... 955 0.0
Contig-U10647-1 (Contig-U10647-1Q) /CSM_Contig/Conti... 42 7e-04
Contig-U11303-1 (Contig-U11303-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U08816-1 (Contig-U08816-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U04864-1 (Contig-U04864-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U00536-1 (Contig-U00536-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U14067-1 (Contig-U14067-1Q) /CSM_Contig/Conti... 38 0.012
Contig-U13393-1 (Contig-U13393-1Q) /CSM_Contig/Conti... 38 0.012
Contig-U11101-1 (Contig-U11101-1Q) /CSM_Contig/Conti... 38 0.012
Contig-U09050-1 (Contig-U09050-1Q) /CSM_Contig/Conti... 38 0.012

>Contig-U06783-1 (Contig-U06783-1Q) /CSM_Contig/Contig-U06783-1Q.Seq.d
Length = 661

Score = 955 bits (482), Expect = 0.0
Identities = 496/503 (98%)
Strand = Plus / Plus


Query: 1 ccatgcgtccgattaaatctcattaatagatcaaagagattaaatattcaaaatttttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccatgcgtccgattaaatctcattaatagatcaaagagattaaatattcaaaatttttca 60


Query: 61 aaagtaacaacaacaaacttaatattgaggaatagtataaataatagtataattttnnnn 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaagtaacaacaacaaacttaatattgaggaatagtataaataatagtataattttcccc 120


Query: 121 nnntcaaataatgataattcaatattatcattaaattactcaacatcaacaacaagaacc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccctcaaataatgataattcaatattatcattaaattactcaacatcaacaacaagaacc 180


Query: 181 aaaagaaaagataatccagttgataataataataaaagaattggaacgattaaaagacca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaaagaaaagataatccagttgataataataataaaagaattggaacgattaaaagacca 240


Query: 241 atatttaaaacatattcagaaagacatgaaccaaaattaaagaatgattttaaagaattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atatttaaaacatattcagaaagacatgaaccaaaattaaagaatgattttaaagaattt 300


Query: 301 ggtttaagtaatgaattgattgaatcaattaaagagaataattgggaaaaaccaacagat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggtttaagtaatgaattgattgaatcaattaaagagaataattgggaaaaaccaacagat 360


Query: 361 gttcaaaaacaagttataccattaatatttaaaggtagaaatacagttttctcatcagtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gttcaaaaacaagttataccattaatatttaaaggtagaaatacagttttctcatcagtt 420


Query: 421 acaggtagtggtaaaactggtgcttacctcttaccttttatacaaattttaacaactttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 acaggtagtggtaaaactggtgcttacctcttaccttttatacaaattttaacaactttt 480


Query: 481 aaaagaaataaattaaattattt 503
|||||||||||||||||||||||
Sbjct: 481 aaaagaaataaattaaattattt 503


Score = 170 bits (86), Expect = 1e-42
Identities = 86/86 (100%)
Strand = Plus / Plus


Query: 517 caagacaaagagaatggccaaattgaaaatgaatttgatgaaaattatgaattatttaat 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 caagacaaagagaatggccaaattgaaaatgaatttgatgaaaattatgaattatttaat 576


Query: 577 gaagaagattatggtgataaaccatt 602
||||||||||||||||||||||||||
Sbjct: 577 gaagaagattatggtgataaaccatt 602


>Contig-U10647-1 (Contig-U10647-1Q) /CSM_Contig/Contig-U10647-1Q.Seq.d
Length = 559

Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 158 actcaacatcaacaacaagaa 178
|||||||||||||||||||||
Sbjct: 110 actcaacatcaacaacaagaa 130


>Contig-U11303-1 (Contig-U11303-1Q) /CSM_Contig/Contig-U11303-1Q.Seq.d
Length = 2115

Score = 40.1 bits (20), Expect = 0.003
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 203 ataataataataaaagaatt 222
||||||||||||||||||||
Sbjct: 492 ataataataataaaagaatt 511


Score = 30.2 bits (15), Expect = 2.9
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 201 tgataataataataa 215
|||||||||||||||
Sbjct: 400 tgataataataataa 414


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 37,014
Number of Sequences: 6905
Number of extensions: 37014
Number of successful extensions: 10553
Number of sequences better than 10.0: 888
length of query: 661
length of database: 5,674,871
effective HSP length: 16
effective length of query: 645
effective length of database: 5,564,391
effective search space: 3589032195
effective search space used: 3589032195
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11. 9
Homology vs DNA
Query= Contig-U06783-1 (Contig-U06783-1Q) /CSM_Contig/Contig-U06783-1Q.Seq.d
(661 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU266160) Dictyostelium discoideum vegetative cDNA clone:VS... 658 0.0 3
(AU266159) Dictyostelium discoideum vegetative cDNA clone:VS... 658 0.0 2
(AC116987) Dictyostelium discoideum chromosome 2 map 3527441... 46 0.004 3
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 38 0.006 9
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 36 0.018 7
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 38 0.018 7
(FE236802) CAPG4068.fwd CAPG Naegleria gruberi amoeba stage ... 34 0.021 3
(AZ547081) ENTDN50TR Entamoeba histolytica Sheared DNA Entam... 38 0.021 2
(AZ689533) ENTKZ79TF Entamoeba histolytica Sheared DNA Entam... 38 0.021 2
(BH138809) ENTOT71TR Entamoeba histolytica Sheared DNA Entam... 38 0.021 2
(BH138920) ENTNX09TF Entamoeba histolytica Sheared DNA Entam... 38 0.021 2
(BH148454) ENTPX11TF Entamoeba histolytica Sheared DNA Entam... 38 0.021 2
(BH131865) ENTOC02TR Entamoeba histolytica Sheared DNA Entam... 38 0.021 2
(BH136993) ENTNM86TR Entamoeba histolytica Sheared DNA Entam... 38 0.021 2
(AZ531115) ENTBX89TR Entamoeba histolytica Sheared DNA Entam... 38 0.021 2
(AZ529949) ENTCS62TR Entamoeba histolytica Sheared DNA Entam... 38 0.021 2
(AZ531322) ENTCM83TR Entamoeba histolytica Sheared DNA Entam... 38 0.021 2
(AL035475) Plasmodium falciparum MAL4P2. 34 0.024 8
(FE234377) CAPG2788.fwd CAPG Naegleria gruberi amoeba stage ... 34 0.024 3
(FE243795) CAPG7837.fwd CAPG Naegleria gruberi amoeba stage ... 34 0.024 3
(FE239509) CAPG5402.fwd CAPG Naegleria gruberi amoeba stage ... 34 0.025 3
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet... 52 0.026 1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 44 0.029 9
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 36 0.049 6
(AC137207) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 46 0.054 4
(AC176997) Strongylocentrotus purpuratus clone R3-37A14, WOR... 36 0.073 8
(EI388526) POTCR29TF Solanum tuberosum RHPOTKEY BAC ends Sol... 50 0.10 1
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s... 34 0.21 10
(U23477) Dictyostelium discoideum phosphatidylinositol-4,5-d... 46 0.21 3
(AC225118) Solanum lycopersicum cv. Heinz 1706, chromosome 5... 34 0.31 6
(AC197872) Rhesus Macaque BAC CH250-326G14 () complete sequ... 48 0.40 1
(CW515833) OP__Ba0010F12.r OP__Ba Oryza punctata genomic clo... 48 0.40 1
(CC077385) CSU-K33r.10F15.SP6 CSU-K33r Aedes aegypti genomic... 48 0.40 1
(FG636005) TT-09_O22 Samsun trichome library Nicotiana tabac... 48 0.40 1
(CP000082) Psychrobacter arcticus 273-4, complete genome. 48 0.40 1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 36 0.43 8
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 32 0.45 8
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 34 0.48 6
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 36 0.54 9
(AC166998) Bos taurus clone CH240-178N2, WORKING DRAFT SEQUE... 36 0.54 3
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 36 0.56 16
(AC116551) Dictyostelium discoideum chromosome 2 map complem... 36 0.57 8
(AC187405) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB... 36 0.63 5
(AC116919) Dictyostelium discoideum chromosome 2 map complem... 38 0.65 4
(DR448848) AR1060C07 A. gomesiana hemocytes normalized libra... 42 0.80 2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 32 0.82 10
(BX255942) Zebrafish DNA sequence from clone DKEY-269K6 in l... 34 0.84 2
(AC115613) Dictyostelium discoideum chromosome 2 map 209116-... 38 0.97 3
(CD325824) AGENCOURT_14144636 NICHD_XGC_Eye1 Xenopus laevis ... 34 1.1 2
(ER522764) 1093015598731 Global-Ocean-Sampling_GS-35-01-01-1... 36 1.1 2
(CD326737) AGENCOURT_14144638 NICHD_XGC_Eye1 Xenopus laevis ... 34 1.1 2
(DX954258) CHORI105-48F1.TR CHORI105.pEpiFOS5 Trypanosoma cr... 36 1.1 2
(AC217143) Solanum lycopersicum chromosome 9 clone C09HBa013... 36 1.1 5
(AC111632) Rattus norvegicus clone CH230-96I6, WORKING DRAFT... 36 1.2 6
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041... 42 1.2 5
(AC005308) Plasmodium falciparum chromosome 12 clone 3D7, **... 32 1.2 8
(BX927142) Zebrafish DNA sequence from clone DKEY-85G17 in l... 36 1.3 6
(CR759732) Zebrafish DNA sequence from clone DKEY-183E23 in ... 38 1.4 4
(AC094386) Rattus norvegicus clone CH230-3N12, WORKING DRAFT... 38 1.5 4
(AC127250) Mus musculus BAC clone RP24-482H23 from chromosom... 46 1.6 1
(AC112677) Mus musculus chromosome 3, clone RP23-176J23, com... 46 1.6 1
(Z23263) Theileria parva mitochondrion DNA. 46 1.6 1
(AC149784) Bos taurus clone CH240-6E7, WORKING DRAFT SEQUENC... 46 1.6 1
(AC231550) Mustela putorius furo clone CH237-11K21, WORKING ... 46 1.6 1
(FH492359) CHO_OF4211xa04r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 1.6 1
(ER620902) 1093017407742 Global-Ocean-Sampling_GS-36-01-01-2... 46 1.6 1
(ER320206) 1092344172466 Global-Ocean-Sampling_GS-34-01-01-1... 46 1.6 1
(ER319457) 1092344166322 Global-Ocean-Sampling_GS-34-01-01-1... 46 1.6 1
(EJ986508) 1093023015418 Global-Ocean-Sampling_GS-30-02-01-1... 46 1.6 1
(EJ947921) 1093018924534 Global-Ocean-Sampling_GS-30-02-01-1... 46 1.6 1
(EJ902949) 1093018498302 Global-Ocean-Sampling_GS-30-02-01-1... 46 1.6 1
(EJ879861) 1093018391273 Global-Ocean-Sampling_GS-30-02-01-1... 46 1.6 1
(EJ295332) 1095388032898 Global-Ocean-Sampling_GS-27-01-01-1... 46 1.6 1
(DU938717) 366282 Tomato EcoRI BAC Library Solanum lycopersi... 46 1.6 1
(DU908142) 370679 Tomato EcoRI BAC Library Solanum lycopersi... 46 1.6 1
(CZ896395) gy94f04.x1.b.screen Pine methylation unfiltered l... 46 1.6 1
(CE663461) tigr-gss-dog-17000313669456 Dog Library Canis lup... 46 1.6 1
(BZ117628) CH230-365N19.TV CHORI-230 Segment 2 Rattus norveg... 46 1.6 1
(BQ547588) EST631215 TpMugugaSh01 Theileria parva cDNA clone... 46 1.6 1
(BQ547587) EST631214 TpMugugaSh01 Theileria parva cDNA clone... 46 1.6 1
(BQ544318) EST627945 TpMugugaSh01 Theileria parva cDNA clone... 46 1.6 1
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 38 1.6 16
(AC115607) Dictyostelium discoideum chromosome 2 map 4559693... 36 1.8 6
(AE014830) Plasmodium falciparum 3D7 chromosome 10 section 2... 34 2.0 7
(AL354998) Human DNA sequence from clone RP11-59A15 on chrom... 34 2.1 4
(CU915338) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 2.1 6
(CR759810) Zebrafish DNA sequence from clone DKEY-175K23 in ... 34 2.2 4
(ED736374) GM_WBb0095M09.f GM_WBb Glycine max genomic clone ... 42 2.2 2
(AC153884) Mus musculus 6 BAC RP23-476E22 (Roswell Park Can... 36 2.3 3
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 38 2.6 15
(AL844509) Plasmodium falciparum chromosome 13. 34 2.7 11
(EF133692) Helobdella sp. MS-2000 Pax 3/7B mRNA, partial cds. 32 2.7 3
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 34 2.7 7
(AC006773) Caenorhabditis elegans clone Y46E12, *** SEQUENCI... 40 2.7 4
(AG566934) Mus musculus molossinus DNA, clone:MSMg01-488C05.... 42 2.8 2
(EI811109) MUGQ_CH252P259H09T7_CN531_041 CHORI-252 Vervet Mo... 36 2.8 2
(AC182406) Bos taurus clone CH240-520E19, WORKING DRAFT SEQU... 40 2.9 4
(AM472044) Vitis vinifera contig VV78X003471.6, whole genome... 34 3.0 3
(AG500921) Mus musculus molossinus DNA, clone:MSMg01-401J01.... 42 3.0 2
(AC130281) Mus musculus chromosome 3, clone RP23-372I17, com... 34 3.0 2

>(AU266160) Dictyostelium discoideum vegetative cDNA clone:VSG228,
3' end single read.
Length = 662

Score = 658 bits (332), Expect(3) = 0.0
Identities = 332/332 (100%)
Strand = Plus / Plus


Query: 124 tcaaataatgataattcaatattatcattaaattactcaacatcaacaacaagaaccaaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 tcaaataatgataattcaatattatcattaaattactcaacatcaacaacaagaaccaaa 183


Query: 184 agaaaagataatccagttgataataataataaaagaattggaacgattaaaagaccaata 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 agaaaagataatccagttgataataataataaaagaattggaacgattaaaagaccaata 243


Query: 244 tttaaaacatattcagaaagacatgaaccaaaattaaagaatgattttaaagaatttggt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tttaaaacatattcagaaagacatgaaccaaaattaaagaatgattttaaagaatttggt 303


Query: 304 ttaagtaatgaattgattgaatcaattaaagagaataattgggaaaaaccaacagatgtt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ttaagtaatgaattgattgaatcaattaaagagaataattgggaaaaaccaacagatgtt 363


Query: 364 caaaaacaagttataccattaatatttaaaggtagaaatacagttttctcatcagttaca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 caaaaacaagttataccattaatatttaaaggtagaaatacagttttctcatcagttaca 423


Query: 424 ggtagtggtaaaactggtgcttacctcttacc 455
||||||||||||||||||||||||||||||||
Sbjct: 424 ggtagtggtaaaactggtgcttacctcttacc 455

Score = 230 bits (116), Expect(3) = 0.0
Identities = 116/116 (100%)
Strand = Plus / Plus


Query: 1 ccatgcgtccgattaaatctcattaatagatcaaagagattaaatattcaaaatttttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccatgcgtccgattaaatctcattaatagatcaaagagattaaatattcaaaatttttca 60


Query: 61 aaagtaacaacaacaaacttaatattgaggaatagtataaataatagtataatttt 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaagtaacaacaacaaacttaatattgaggaatagtataaataatagtataatttt 116

Score = 65.9 bits (33), Expect(3) = 0.0
Identities = 33/33 (100%)
Strand = Plus / Plus


Query: 570 atttaatgaagaagattatggtgataaaccatt 602
|||||||||||||||||||||||||||||||||
Sbjct: 570 atttaatgaagaagattatggtgataaaccatt 602

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 722,187,438
Number of extensions: 55606157
Number of successful extensions: 7574788
Number of sequences better than 10.0: 244
Length of query: 661
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 638
Effective length of database: 93,106,754,628
Effective search space: 59402109452664
Effective search space used: 59402109452664
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.22
Homology vs Protein
Query= Contig-U06783-1 (Contig-U06783-1Q) /CSM_Contig/Contig-U06783-1Q.Seq.d
(661 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AE015929_1245(AE015929|pid:none) Staphylococcus epidermidis ATCC... 70 4e-11
(Q90WU3) RecName: Full=ATP-dependent RNA helicase DDX1; ... 68 3e-10
CP000513_965(CP000513|pid:none) Dichelobacter nodosus VCS1703A, ... 67 4e-10
AP009351_1467(AP009351|pid:none) Staphylococcus aureus subsp. au... 67 5e-10
AJ938182_1430(AJ938182|pid:none) Staphylococcus aureus RF122 com... 67 5e-10
AL049482_8(AL049482|pid:none) Arabidopsis thaliana DNA chromosom... 66 8e-10
AK248109_1(AK248109|pid:none) Dugesia japonica mRNA for DEAD/H b... 66 8e-10
AY915580_1(AY915580|pid:none) Schistosoma japonicum SJCHGC07781 ... 66 1e-09
BA000011_1326(BA000011|pid:none) Thermoplasma volcanium GSS1 DNA... 65 1e-09
CR954246_486(CR954246|pid:none) Pseudoalteromonas haloplanktis s... 65 1e-09
FN357552_2(FN357552|pid:none) Schistosoma mansoni genome sequenc... 65 2e-09
AM444297_4(AM444297|pid:none) Vitis vinifera contig VV78X085347.... 65 2e-09
CP000724_3631(CP000724|pid:none) Alkaliphilus metalliredigens QY... 65 2e-09
CR378664_198(CR378664|pid:none) Photobacterium profundum SS9; se... 65 2e-09
AK298426_1(AK298426|pid:none) Homo sapiens cDNA FLJ51031 complet... 65 2e-09
(Q641Y8) RecName: Full=ATP-dependent RNA helicase DDX1; ... 64 3e-09
(A2VD92) RecName: Full=ATP-dependent RNA helicase DDX1; ... 64 3e-09
(Q0IIK5) RecName: Full=ATP-dependent RNA helicase DDX1; ... 64 3e-09
BC008570_1(BC008570|pid:none) Mus musculus DEAD (Asp-Glu-Ala-Asp... 64 3e-09
(Q92499) RecName: Full=ATP-dependent RNA helicase DDX1; ... 64 3e-09
(Q91VR5) RecName: Full=ATP-dependent RNA helicase DDX1; ... 64 3e-09
AK132157_1(AK132157|pid:none) Mus musculus 14, 17 days embryo he... 64 3e-09
(Q5XH91) RecName: Full=ATP-dependent RNA helicase DDX1; ... 64 3e-09
AE015927_1659(AE015927|pid:none) Clostridium tetani E88, complet... 64 4e-09
CP000487_756(CP000487|pid:none) Campylobacter fetus subsp. fetus... 64 4e-09
AB378065_1(AB378065|pid:none) Gryllus bimaculatus vas mRNA for v... 64 4e-09
(Q6FNA2) RecName: Full=ATP-dependent RNA helicase DBP10; ... 64 5e-09
CP000109_1015(CP000109|pid:none) Thiomicrospira crunogena XCL-2,... 64 5e-09
(Q56X76) RecName: Full=DEAD-box ATP-dependent RNA helicase 39; ... 64 5e-09
CP001389_2357(CP001389|pid:none) Rhizobium sp. NGR234, complete ... 63 7e-09
(A5DID7) RecName: Full=ATP-dependent RNA helicase HAS1; ... 63 7e-09
(Q9VNV3) RecName: Full=ATP-dependent RNA helicase Ddx1; ... 63 9e-09
(Q5B5E7) RecName: Full=ATP-dependent rRNA helicase rrp3; ... 63 9e-09
AE016825_1003(AE016825|pid:none) Chromobacterium violaceum ATCC ... 63 9e-09
(Q8W4E1) RecName: Full=DEAD-box ATP-dependent RNA helicase 47; ... 63 9e-09
U34773_1(U34773|pid:none) Drosophila melanogaster DEAD-box prote... 63 9e-09
AC024830_10(AC024830|pid:none) Caenorhabditis elegans cosmid Y55... 63 9e-09
AK053259_1(AK053259|pid:none) Mus musculus 0 day neonate eyeball... 62 1e-08
(Q2H1Q8) RecName: Full=ATP-dependent rRNA helicase RRP3; ... 62 1e-08
AF303464_1(AF303464|pid:none) Unidentified ATP-dependent RNA hel... 62 1e-08
AC161241_22(AC161241|pid:none) Medicago truncatula clone mth2-19... 62 1e-08
BC039826_1(BC039826|pid:none) Homo sapiens DEAD (Asp-Glu-Ala-Asp... 62 1e-08
AY423380_1(AY423380|pid:none) Crassostrea gigas vasa-like protei... 62 1e-08
FM954972_454(FM954972|pid:none) Vibrio splendidus LGP32 chromoso... 62 1e-08
AM295250_1172(AM295250|pid:none) Staphylococcus carnosus subsp. ... 62 1e-08
(P54824) RecName: Full=Probable ATP-dependent RNA helicase DDX6;... 62 1e-08
(Q5ZKB9) RecName: Full=Probable ATP-dependent RNA helicase DDX6;... 62 1e-08
BT078156_1(BT078156|pid:none) Lepeophtheirus salmonis clone lsal... 62 1e-08
BT030738_1(BT030738|pid:none) Bos taurus DEAD (Asp-Glu-Ala-Asp) ... 62 1e-08
AK054144_1(AK054144|pid:none) Mus musculus 2 days pregnant adult... 62 1e-08
AF038995_1(AF038995|pid:none) Mus musculus putative RNA helicase... 62 1e-08
CP000789_890(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 chr... 62 2e-08
FP236842_994(FP236842|pid:none) Erwinia pyrifoliae strain Ep1/96... 62 2e-08
T32328(T32328)hypothetical protein C24H12.4 - Caenorhabditis ele... 62 2e-08
AP008232_1795(AP008232|pid:none) Sodalis glossinidius str. 'mors... 62 2e-08
AF025451_3(AF025451|pid:none) Caenorhabditis elegans cosmid C24H... 62 2e-08
AM494961_24(AM494961|pid:none) Leishmania braziliensis chromosom... 62 2e-08
(Q9WTM2) RecName: Full=Probable ATP-dependent RNA helicase DDX6;... 62 2e-08
CP001229_1425(CP001229|pid:none) Sulfurihydrogenibium azorense A... 61 3e-08
FM954973_775(FM954973|pid:none) Vibrio splendidus LGP32 chromoso... 61 3e-08
(O60080) RecName: Full=ATP-dependent RNA helicase dbp9; ... 61 3e-08
CU861906_545(CU861906|pid:none) Ralstonia solanacearum strain Mo... 61 3e-08
BC116542_1(BC116542|pid:none) Danio rerio DEAD (Asp-Glu-Ala-Asp)... 61 3e-08
CP000749_1873(CP000749|pid:none) Marinomonas sp. MWYL1, complete... 61 3e-08
AD0330(AD0330) ATP-dependent RNA helicase [imported] - Yersinia ... 61 3e-08
CP000435_1024(CP000435|pid:none) Synechococcus sp. CC9311, compl... 61 3e-08
CU459003_3981(CU459003|pid:none) Magnetospirillum gryphiswaldens... 61 3e-08
CP000411_1153(CP000411|pid:none) Oenococcus oeni PSU-1, complete... 61 3e-08
CP000720_1103(CP000720|pid:none) Yersinia pseudotuberculosis IP ... 61 3e-08
FN357295_12(FN357295|pid:none) Schistosoma mansoni genome sequen... 61 3e-08
AP007281_235(AP007281|pid:none) Lactobacillus reuteri JCM 1112 D... 60 4e-08
CP001230_897(CP001230|pid:none) Persephonella marina EX-H1, comp... 60 4e-08
AB005147_1(AB005147|pid:none) Danio rerio mRNA for vas, complete... 60 4e-08
BC095001_1(BC095001|pid:none) Danio rerio vasa homolog, mRNA (cD... 60 4e-08
BC170228_1(BC170228|pid:none) Xenopus laevis RNA helicase p54, m... 60 4e-08
AB193326_1(AB193326|pid:none) Moina macrocopa vasa mRNA for VASA... 60 4e-08
(Q12389) RecName: Full=ATP-dependent RNA helicase DBP10; ... 60 4e-08
AM494972_204(AM494972|pid:none) Leishmania braziliensis chromoso... 60 4e-08
BC095776_1(BC095776|pid:none) Danio rerio zgc:112350, mRNA (cDNA... 60 4e-08
AJ311625_1(AJ311625|pid:none) Danio rerio vlg gene for vasa-like... 60 4e-08
AF461759_1(AF461759|pid:none) Danio rerio vasa-like protein (vas... 60 4e-08
CP000488_118(CP000488|pid:none) Candidatus Ruthia magnifica str.... 60 4e-08
(A1CNV8) RecName: Full=ATP-dependent RNA helicase drs1; ... 60 4e-08
CP001277_275(CP001277|pid:none) Candidatus Hamiltonella defensa ... 60 4e-08
AL591985_1186(AL591985|pid:none) Sinorhizobium meliloti 1021 pla... 60 6e-08
FN357865_5(FN357865|pid:none) Schistosoma mansoni genome sequenc... 60 6e-08
CP000847_952(CP000847|pid:none) Rickettsia akari str. Hartford, ... 60 6e-08
AY232161_1(AY232161|pid:none) Drosophila yakuba clone yak-ad_me3... 60 6e-08
CP000753_1974(CP000753|pid:none) Shewanella baltica OS185, compl... 60 6e-08
A71673(A71673) probable ATP-dependent RNA helicase rhlE (rhlE) R... 60 6e-08
AM910990_200(AM910990|pid:none) Plasmodium knowlesi strain H chr... 60 6e-08
AE017197_632(AE017197|pid:none) Rickettsia typhi str. Wilmington... 60 6e-08
(Q5KME7) RecName: Full=Pre-mRNA-processing ATP-dependent RNA hel... 60 6e-08
AM286415_960(AM286415|pid:none) Yersinia enterocolitica subsp. e... 60 6e-08
CP001612_792(CP001612|pid:none) Rickettsia africae ESF-5, comple... 60 6e-08
CP000766_1051(CP000766|pid:none) Rickettsia rickettsii str. Iowa... 60 6e-08
CP000672_863(CP000672|pid:none) Haemophilus influenzae PittGG, c... 60 6e-08
CP000246_1729(CP000246|pid:none) Clostridium perfringens ATCC 13... 60 6e-08
AE014134_1868(AE014134|pid:none) Drosophila melanogaster chromos... 60 6e-08
CP001321_1790(CP001321|pid:none) Haemophilus parasuis SH0165, co... 60 6e-08
AE006914_1020(AE006914|pid:none) Rickettsia conorii str. Malish ... 60 6e-08
(P23128) RecName: Full=Putative ATP-dependent RNA helicase me31b... 60 6e-08
CP001616_967(CP001616|pid:none) Tolumonas auensis DSM 9187, comp... 60 7e-08
CP000090_916(CP000090|pid:none) Ralstonia eutropha JMP134 chromo... 60 7e-08
CP000153_1937(CP000153|pid:none) Sulfurimonas denitrificans DSM ... 60 7e-08
CP000409_857(CP000409|pid:none) Rickettsia canadensis str. McKie... 60 7e-08
BC062498_1(BC062498|pid:none) Xenopus tropicalis DEAD (Asp-Glu-A... 60 7e-08
CP000478_1438(CP000478|pid:none) Syntrophobacter fumaroxidans MP... 60 7e-08
CP000352_2555(CP000352|pid:none) Ralstonia metallidurans CH34, c... 60 7e-08
CU928162_2940(CU928162|pid:none) Escherichia coli ED1a chromosom... 60 7e-08
EF601037_1(EF601037|pid:none) Scaptotrigona postica vasa mRNA, p... 60 7e-08
CP001133_558(CP001133|pid:none) Vibrio fischeri MJ11 chromosome ... 60 7e-08
EF601038_1(EF601038|pid:none) Melipona scutellaris vasa mRNA, pa... 60 7e-08
EF094467_1(EF094467|pid:none) Acyrthosiphon pisum vasa-like prot... 60 7e-08
AM260479_2626(AM260479|pid:none) Ralstonia eutropha H16 chromoso... 60 7e-08
(Q6BH93) RecName: Full=ATP-dependent RNA helicase HAS1; ... 60 7e-08
BC068749_1(BC068749|pid:none) Xenopus laevis hypothetical protei... 60 7e-08
AP008232_913(AP008232|pid:none) Sodalis glossinidius str. 'morsi... 60 7e-08
BA000037_660(BA000037|pid:none) Vibrio vulnificus YJ016 DNA, chr... 60 7e-08
CP000783_2484(CP000783|pid:none) Enterobacter sakazakii ATCC BAA... 60 7e-08
AM910986_17(AM910986|pid:none) Plasmodium knowlesi strain H chro... 60 7e-08
DQ288391_1(DQ288391|pid:none) Apis mellifera vasa protein (vasa)... 60 7e-08
BC072214_1(BC072214|pid:none) Xenopus laevis hypothetical protei... 60 7e-08
CP000851_1456(CP000851|pid:none) Shewanella pealeana ATCC 700345... 59 1e-07
AY648812_1(AY648812|pid:none) Danio rerio DEAD/H box 56 RNA heli... 59 1e-07
AF2395(AF2395) ATP-dependent RNA helicase [imported] - Nostoc sp... 59 1e-07
CP000626_76(CP000626|pid:none) Vibrio cholerae O395 chromosome 1... 59 1e-07
(Q4WJE9) RecName: Full=ATP-dependent rRNA helicase rrp3; ... 59 1e-07
AM412317_1765(AM412317|pid:none) Clostridium botulinum A str. AT... 59 1e-07
EF152995_5(EF152995|pid:none) Serratia marcescens Ung (ung), hyp... 59 1e-07
AF186181_2(AF186181|pid:none) Synechococcus PCC7002 slr0082 (slr... 59 1e-07
AE003853_61(AE003853|pid:none) Vibrio cholerae O1 biovar eltor s... 59 1e-07
AP009247_127(AP009247|pid:none) Candidatus Vesicomyosocius okuta... 59 1e-07
CP000117_1948(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 59 1e-07
AE016795_507(AE016795|pid:none) Vibrio vulnificus CMCP6 chromoso... 59 1e-07
AP008955_4361(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 59 1e-07
AE003852_1386(AE003852|pid:none) Vibrio cholerae O1 biovar eltor... 59 1e-07
BC124668_1(BC124668|pid:none) Danio rerio zgc:153386, mRNA (cDNA... 59 1e-07
FM178379_2189(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ... 59 1e-07
CP000382_582(CP000382|pid:none) Clostridium novyi NT, complete g... 59 1e-07
CU928167_371(CU928167|pid:none) Kluyveromyces thermotolerans str... 59 1e-07
(O22907) RecName: Full=DEAD-box ATP-dependent RNA helicase 24; ... 59 1e-07
CP000939_1704(CP000939|pid:none) Clostridium botulinum B1 str. O... 59 1e-07
CP000813_2216(CP000813|pid:none) Bacillus pumilus SAFR-032, comp... 59 1e-07
(Q29S22) RecName: Full=Probable ATP-dependent RNA helicase DDX47... 59 1e-07
CP001052_1212(CP001052|pid:none) Burkholderia phytofirmans PsJN ... 59 1e-07
AJ276704_1(AJ276704|pid:none) Homo sapiens mRNA for DEAD box pro... 59 1e-07
CP001227_779(CP001227|pid:none) Rickettsia peacockii str. Rustic... 59 1e-07
(Q4TVV3) RecName: Full=Probable ATP-dependent RNA helicase DDX46... 59 1e-07
AX888063_1(AX888063|pid:none) Sequence 3926 from Patent EP1033401. 59 1e-07
AB193325_1(AB193325|pid:none) Artemia franciscana vasa mRNA for ... 59 1e-07
CP000783_652(CP000783|pid:none) Enterobacter sakazakii ATCC BAA-... 59 1e-07
CP001337_415(CP001337|pid:none) Chloroflexus aggregans DSM 9485,... 59 1e-07
CP001071_1988(CP001071|pid:none) Akkermansia muciniphila ATCC BA... 59 1e-07
(Q3SZ40) RecName: Full=Probable ATP-dependent RNA helicase DDX56... 59 1e-07
(Q9H0S4) RecName: Full=Probable ATP-dependent RNA helicase DDX47... 59 1e-07
AE008384_2556(AE008384|pid:none) Methanosarcina mazei strain Goe... 59 1e-07
BC009379_1(BC009379|pid:none) Homo sapiens DEAD (Asp-Glu-Ala-Asp... 59 1e-07
CP000931_2672(CP000931|pid:none) Shewanella halifaxensis HAW-EB4... 59 1e-07
CP000352_456(CP000352|pid:none) Ralstonia metallidurans CH34, co... 59 1e-07
CR954246_1880(CR954246|pid:none) Pseudoalteromonas haloplanktis ... 59 2e-07
AB032566_1(AB032566|pid:none) Oncorhynchus mykiss vas mRNA for V... 59 2e-07
(Q5ANB2) RecName: Full=ATP-dependent RNA helicase DBP10; ... 59 2e-07
AE005174_3458(AE005174|pid:none) Escherichia coli O157:H7 EDL933... 59 2e-07
AE005674_2638(AE005674|pid:none) Shigella flexneri 2a str. 301, ... 59 2e-07
AF479820_1(AF479820|pid:none) Cyprinus carpio DEAD box RNA helic... 59 2e-07
(Q7L014) RecName: Full=Probable ATP-dependent RNA helicase DDX46... 59 2e-07
CP000036_2416(CP000036|pid:none) Shigella boydii Sb227, complete... 59 2e-07
AY821683_1(AY821683|pid:none) Carassius auratus vasa-2 mRNA, com... 59 2e-07
CU468135_2251(CU468135|pid:none) Erwinia tasmaniensis strain ET1... 59 2e-07
(Q5VRY0) RecName: Full=DEAD-box ATP-dependent RNA helicase 39; ... 59 2e-07
BX571870_119(BX571870|pid:none) Photorhabdus luminescens subsp. ... 59 2e-07
AB018344_1(AB018344|pid:none) Homo sapiens mRNA for KIAA0801 pro... 59 2e-07
AK129220_1(AK129220|pid:none) Mus musculus premature mRNA for mK... 59 2e-07
BC092240_1(BC092240|pid:none) Mus musculus DEAD (Asp-Glu-Ala-Asp... 59 2e-07
AE016828_581(AE016828|pid:none) Coxiella burnetii RSA 493, compl... 59 2e-07
AF106680_1(AF106680|pid:none) Homo sapiens RNA helicase mRNA, co... 59 2e-07
(A5E2Z9) RecName: Full=ATP-dependent RNA helicase HAS1; ... 59 2e-07
FP236842_2383(FP236842|pid:none) Erwinia pyrifoliae strain Ep1/9... 59 2e-07
AB193324_1(AB193324|pid:none) Daphnia magna vasa mRNA for VASA R... 59 2e-07
AM412317_1763(AM412317|pid:none) Clostridium botulinum A str. AT... 59 2e-07
AE016827_1950(AE016827|pid:none) Mannheimia succiniciproducens M... 59 2e-07
(Q5R6D8) RecName: Full=Probable ATP-dependent RNA helicase DDX46... 59 2e-07
EU897153_1(EU897153|pid:none) Escherichia coli strain TB182A ATP... 59 2e-07
D89592_1(D89592|pid:none) Vibrio alginolyticus rhlE, KtrA and Kt... 59 2e-07
EU532190_1(EU532190|pid:none) Silurus meridionalis Vasa mRNA, co... 59 2e-07
(P21507) RecName: Full=ATP-dependent RNA helicase srmB; ... 59 2e-07
AB193327_2(AB193327|pid:none) Daphnia magna nrk, vasa genes for ... 59 2e-07
(Q569Z5) RecName: Full=Probable ATP-dependent RNA helicase DDX46... 59 2e-07
CP000962_1765(CP000962|pid:none) Clostridium botulinum A3 str. L... 59 2e-07
CP000931_1533(CP000931|pid:none) Shewanella halifaxensis HAW-EB4... 59 2e-07
CP001600_2932(CP001600|pid:none) Edwardsiella ictaluri 93-146, c... 59 2e-07
CP001087_2288(CP001087|pid:none) Desulfobacterium autotrophicum ... 59 2e-07
AK291788_1(AK291788|pid:none) Homo sapiens cDNA FLJ78679 complet... 59 2e-07
(Q0UZ59) RecName: Full=ATP-dependent RNA helicase DBP9; ... 59 2e-07
AP008937_209(AP008937|pid:none) Lactobacillus fermentum IFO 3956... 59 2e-07
EU532191_1(EU532191|pid:none) Silurus meridionalis Vasa short fo... 59 2e-07
AF524865_2(AF524865|pid:none) Francisella tularensis subsp. tula... 58 2e-07
CU928158_2223(CU928158|pid:none) Escherichia fergusonii ATCC 354... 58 2e-07
CP000970_783(CP000970|pid:none) Escherichia coli SMS-3-5, comple... 58 2e-07
(A2RB17) RecName: Full=ATP-dependent rRNA helicase rrp3; ... 58 2e-07
CP000411_1488(CP000411|pid:none) Oenococcus oeni PSU-1, complete... 58 2e-07
AJ719824_1(AJ719824|pid:none) Gallus gallus mRNA for hypothetica... 58 2e-07
AY449462_12(AY449462|pid:none) Oikopleura dioica clone BACOIKO00... 58 2e-07
BT042115_1(BT042115|pid:none) Zea mays full-length cDNA clone ZM... 58 2e-07
BX571864_63(BX571864|pid:none) Photorhabdus luminescens subsp. l... 58 2e-07
CP000608_517(CP000608|pid:none) Francisella tularensis subsp. tu... 58 2e-07
AJ749949_1471(AJ749949|pid:none) Francisella tularensis subsp. t... 58 2e-07
AY957503_1(AY957503|pid:none) Anopheles gambiae vasa-like protei... 58 2e-07
AE005674_747(AE005674|pid:none) Shigella flexneri 2a str. 301, c... 58 2e-07
CP000243_774(CP000243|pid:none) Escherichia coli UTI89, complete... 58 2e-07
CP000964_1195(CP000964|pid:none) Klebsiella pneumoniae 342, comp... 58 2e-07
AM260479_529(AM260479|pid:none) Ralstonia eutropha H16 chromosom... 58 2e-07
AE014075_853(AE014075|pid:none) Escherichia coli CFT073, complet... 58 2e-07
AE005174_868(AE005174|pid:none) Escherichia coli O157:H7 EDL933,... 58 2e-07
CP000422_1194(CP000422|pid:none) Pediococcus pentosaceus ATCC 25... 58 2e-07
AE014296_94(AE014296|pid:none) Drosophila melanogaster chromosom... 58 2e-07
(Q6ATJ8) RecName: Full=DEAD-box ATP-dependent RNA helicase 16; ... 58 2e-07
CU928164_768(CU928164|pid:none) Escherichia coli IAI39 chromosom... 58 2e-07
AE016796_216(AE016796|pid:none) Vibrio vulnificus CMCP6 chromoso... 58 2e-07
AM233362_1391(AM233362|pid:none) Francisella tularensis subsp. h... 58 2e-07
CP000802_805(CP000802|pid:none) Escherichia coli HS, complete ge... 58 2e-07
(A2QAX7) RecName: Full=ATP-dependent RNA helicase drs1; ... 58 2e-07
CP000036_625(CP000036|pid:none) Shigella boydii Sb227, complete ... 58 2e-07
CP000909_3025(CP000909|pid:none) Chloroflexus aurantiacus J-10-f... 58 2e-07
CP000034_749(CP000034|pid:none) Shigella dysenteriae Sd197, comp... 58 2e-07
CP001327_185(CP001327|pid:none) Micromonas sp. RCC299 chromosome... 58 2e-07
CP001083_1869(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 58 2e-07
CP001068_410(CP001068|pid:none) Ralstonia pickettii 12J chromoso... 58 2e-07
CP000937_1856(CP000937|pid:none) Francisella philomiragia subsp.... 58 2e-07
AP007151_1052(AP007151|pid:none) Aspergillus oryzae RIB40 genomi... 58 3e-07
AK222662_1(AK222662|pid:none) Homo sapiens mRNA for DEAD (Asp-Gl... 58 3e-07
BT033618_1(BT033618|pid:none) Zea mays full-length cDNA clone ZM... 58 3e-07
BA000038_360(BA000038|pid:none) Vibrio vulnificus YJ016 DNA, chr... 58 3e-07
CR378675_199(CR378675|pid:none) Photobacterium profundum SS9 chr... 58 3e-07
AP007255_1385(AP007255|pid:none) Magnetospirillum magneticum AMB... 58 3e-07
AE016796_1430(AE016796|pid:none) Vibrio vulnificus CMCP6 chromos... 58 3e-07
AK022774_1(AK022774|pid:none) Homo sapiens cDNA FLJ12712 fis, cl... 58 3e-07
CP000034_2624(CP000034|pid:none) Shigella dysenteriae Sd197, com... 58 3e-07
AL935258_190(AL935258|pid:none) Lactobacillus plantarum strain W... 58 3e-07
CP001022_831(CP001022|pid:none) Exiguobacterium sibiricum 255-15... 58 3e-07
(Q9NY93) RecName: Full=Probable ATP-dependent RNA helicase DDX56... 58 3e-07
CP001091_2095(CP001091|pid:none) Actinobacillus pleuropneumoniae... 58 3e-07
CP000301_3659(CP000301|pid:none) Rhodopseudomonas palustris BisB... 58 3e-07
FM954973_196(FM954973|pid:none) Vibrio splendidus LGP32 chromoso... 58 3e-07
AB236772_1(AB236772|pid:none) Trifolium pratense RNA for putativ... 58 3e-07
CP000884_5318(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 58 3e-07
CP000803_1032(CP000803|pid:none) Francisella tularensis subsp. h... 58 3e-07
CU633749_483(CU633749|pid:none) Cupriavidus taiwanensis str. LMG... 58 3e-07
CP000462_2340(CP000462|pid:none) Aeromonas hydrophila subsp. hyd... 58 3e-07
CP000926_4013(CP000926|pid:none) Pseudomonas putida GB-1, comple... 58 3e-07
BX950229_457(BX950229|pid:none) Methanococcus maripaludis strain... 58 3e-07
CP000721_2740(CP000721|pid:none) Clostridium beijerinckii NCIMB ... 58 3e-07
CP000089_3281(CP000089|pid:none) Dechloromonas aromatica RCB, co... 58 3e-07
AE017340_2119(AE017340|pid:none) Idiomarina loihiensis L2TR, com... 58 3e-07
AF399934_1(AF399934|pid:none) Spisula solidissima RNA helicase p... 57 4e-07
CP000886_2620(CP000886|pid:none) Salmonella enterica subsp. ente... 57 4e-07
AM286415_2746(AM286415|pid:none) Yersinia enterocolitica subsp. ... 57 4e-07
AE017220_817(AE017220|pid:none) Salmonella enterica subsp. enter... 57 4e-07
BT035159_1(BT035159|pid:none) Zea mays full-length cDNA clone ZM... 57 4e-07
(A7TJK8) RecName: Full=Pre-mRNA-processing ATP-dependent RNA hel... 57 4e-07
CU633900_249(CU633900|pid:none) Podospora anserina genomic DNA c... 57 4e-07
AE006468_793(AE006468|pid:none) Salmonella enterica subsp. enter... 57 4e-07
CP000381_1224(CP000381|pid:none) Neisseria meningitidis 053442, ... 57 4e-07
AY113641_1(AY113641|pid:none) Drosophila melanogaster RH74035 fu... 57 4e-07
AE014613_1943(AE014613|pid:none) Salmonella enterica subsp. ente... 57 4e-07
CP000949_3802(CP000949|pid:none) Pseudomonas putida W619, comple... 57 4e-07
CP000822_2273(CP000822|pid:none) Citrobacter koseri ATCC BAA-895... 57 4e-07
AE017042_944(AE017042|pid:none) Yersinia pestis biovar Microtus ... 57 4e-07
AB378581_1(AB378581|pid:none) Pagrus major vasa mRNA for DEAD (A... 57 4e-07
CP000436_1303(CP000436|pid:none) Haemophilus somnus 129PT, compl... 57 4e-07
CP000947_317(CP000947|pid:none) Haemophilus somnus 2336, complet... 57 4e-07
CU207211_422(CU207211|pid:none) Herminiimonas arsenicoxydans chr... 57 4e-07
CP000922_857(CP000922|pid:none) Anoxybacillus flavithermus WK1, ... 57 4e-07
AM933173_784(AM933173|pid:none) Salmonella enterica subsp. enter... 57 4e-07
AE014298_3256(AE014298|pid:none) Drosophila melanogaster chromos... 57 4e-07
CP000885_1978(CP000885|pid:none) Clostridium phytofermentans ISD... 57 4e-07
EU960244_1(EU960244|pid:none) Zea mays clone 222826 ATP-dependen... 57 4e-07
CP000038_726(CP000038|pid:none) Shigella sonnei Ss046, complete ... 57 4e-07
FJ605736_1(FJ605736|pid:none) Asterias forbesi vasa mRNA, comple... 57 4e-07
BX936398_1214(BX936398|pid:none) Yersinia pseudotuberculosis IP3... 57 4e-07
CP001016_1747(CP001016|pid:none) Beijerinckia indica subsp. indi... 57 4e-07
AF426171_17(AF426171|pid:none) Yersinia pestis transposase (tnp)... 57 4e-07
AE006468_2573(AE006468|pid:none) Salmonella enterica subsp. ente... 57 4e-07
(Q757U8) RecName: Full=ATP-dependent RNA helicase DBP10; ... 57 4e-07
AM421808_1207(AM421808|pid:none) Neisseria meningitidis serogrou... 57 4e-07
AD0830(AD0830) ATP-dependent RNA helicase SrmB [imported] - Salm... 57 4e-07
CR954212_61(CR954212|pid:none) Ostreococcus tauri strain OTTH059... 57 4e-07
AE002098_1311(AE002098|pid:none) Neisseria meningitidis MC58, co... 57 4e-07
AM747720_2408(AM747720|pid:none) Burkholderia cenocepacia J2315 ... 57 5e-07
CP000544_905(CP000544|pid:none) Halorhodospira halophila SL1, co... 57 5e-07
CP001503_2521(CP001503|pid:none) Burkholderia glumae BGR1 chromo... 57 5e-07
CP000097_442(CP000097|pid:none) Synechococcus sp. CC9902, comple... 57 5e-07
EU448254_1(EU448254|pid:none) Salvelinus leucomaenis vasa mRNA, ... 57 5e-07
CP001111_480(CP001111|pid:none) Stenotrophomonas maltophilia R55... 57 5e-07
AB047803_1(AB047803|pid:none) Ciona savignyi CsDEAD1b(CsVHb) mRN... 57 5e-07
AM747720_2113(AM747720|pid:none) Burkholderia cenocepacia J2315 ... 57 5e-07
AE003852_648(AE003852|pid:none) Vibrio cholerae O1 biovar eltor ... 57 5e-07
CP000020_1810(CP000020|pid:none) Vibrio fischeri ES114 chromosom... 57 5e-07
CP001600_2527(CP001600|pid:none) Edwardsiella ictaluri 93-146, c... 57 5e-07
CP000423_2419(CP000423|pid:none) Lactobacillus casei ATCC 334, c... 57 5e-07
CP000517_221(CP000517|pid:none) Lactobacillus helveticus DPC 457... 57 5e-07
CP000507_1268(CP000507|pid:none) Shewanella amazonensis SB2B, co... 57 5e-07
CP001139_1842(CP001139|pid:none) Vibrio fischeri MJ11 chromosome... 57 5e-07
CP000627_180(CP000627|pid:none) Vibrio cholerae O395 chromosome ... 57 5e-07
AE005176_410(AE005176|pid:none) Lactococcus lactis subsp. lactis... 57 5e-07
BX842646_296(BX842646|pid:none) Bdellovibrio bacteriovorus compl... 57 5e-07
AP008934_1198(AP008934|pid:none) Staphylococcus saprophyticus su... 57 5e-07
CP000472_3030(CP000472|pid:none) Shewanella piezotolerans WP3, c... 57 5e-07
AB047802_1(AB047802|pid:none) Ciona savignyi CsDEAD1a(CsVHa) mRN... 57 5e-07
CP000440_2346(CP000440|pid:none) Burkholderia ambifaria AMMD chr... 57 5e-07
CP000868_957(CP000868|pid:none) Burkholderia multivorans ATCC 17... 57 5e-07
AE015927_1959(AE015927|pid:none) Clostridium tetani E88, complet... 57 5e-07
AF510054_1(AF510054|pid:none) Schistocerca gregaria vasa-like ge... 57 5e-07
CP001087_3237(CP001087|pid:none) Desulfobacterium autotrophicum ... 57 5e-07
(A6RW56) RecName: Full=ATP-dependent rRNA helicase rrp3; ... 57 5e-07
CP000447_2427(CP000447|pid:none) Shewanella frigidimarina NCIMB ... 57 5e-07
AM494969_47(AM494969|pid:none) Leishmania braziliensis chromosom... 57 5e-07
AY957502_1(AY957502|pid:none) Aedes aegypti vasa-like protein mR... 57 5e-07
AM459847_1(AM459847|pid:none) Vitis vinifera contig VV78X063071.... 57 5e-07
EF144298_1(EF144298|pid:none) Populus trichocarpa clone PX0015_H... 57 5e-07
CP000883_25(CP000883|pid:none) Hemiselmis andersenii chromosome ... 57 5e-07
AB462951_1(AB462951|pid:none) Synthetic construct DNA, clone: pF... 57 5e-07
CP000614_2376(CP000614|pid:none) Burkholderia vietnamiensis G4 c... 57 6e-07
CP001359_3124(CP001359|pid:none) Anaeromyxobacter dehalogenans 2... 57 6e-07
CP000961_3492(CP000961|pid:none) Shewanella woodyi ATCC 51908, c... 57 6e-07
AP009484_1210(AP009484|pid:none) Macrococcus caseolyticus JCSC54... 57 6e-07
AM055943_100(AM055943|pid:none) Toxoplasma gondii RH, genomic DN... 57 6e-07
AY088068_1(AY088068|pid:none) Arabidopsis thaliana clone 40850 m... 57 6e-07
(A7TGW7) RecName: Full=ATP-dependent RNA helicase DBP10; ... 57 6e-07
CP000378_1692(CP000378|pid:none) Burkholderia cenocepacia AU 105... 57 6e-07
AM432347_2(AM432347|pid:none) Vitis vinifera contig VV78X148378.... 57 6e-07
AF432868_1(AF432868|pid:none) Squalus acanthias vasa-like protei... 57 6e-07
CP000248_1287(CP000248|pid:none) Novosphingobium aromaticivorans... 57 6e-07
(Q09719) RecName: Full=ATP-dependent RNA helicase dbp10; ... 57 6e-07
CP000251_2947(CP000251|pid:none) Anaeromyxobacter dehalogenans 2... 57 6e-07
(Q9P6N8) RecName: Full=ATP-dependent rRNA helicase rrp3; ... 57 6e-07
AE014298_1133(AE014298|pid:none) Drosophila melanogaster chromos... 57 6e-07
AF199442_1(AF199442|pid:none) Methanococcoides burtonii DEAD-box... 57 6e-07
(Q6BL34) RecName: Full=ATP-dependent RNA helicase DBP10; ... 57 6e-07
AE016830_1283(AE016830|pid:none) Enterococcus faecalis V583, com... 56 8e-07
CP000388_415(CP000388|pid:none) Pseudoalteromonas atlantica T6c,... 56 8e-07
CP000472_1191(CP000472|pid:none) Shewanella piezotolerans WP3, c... 56 8e-07
AL954747_2041(AL954747|pid:none) Nitrosomonas europaea ATCC 1971... 56 8e-07
DQ452383_1(DQ452383|pid:none) Chlamys farreri vasa mRNA, complet... 56 8e-07
CR378678_331(CR378678|pid:none) Photobacterium profundum SS9 chr... 56 8e-07
CP000086_975(CP000086|pid:none) Burkholderia thailandensis E264 ... 56 8e-07
CP001574_648(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 56 8e-07
AE017143_179(AE017143|pid:none) Haemophilus ducreyi strain 35000... 56 8e-07
CP000589_75(CP000589|pid:none) Ostreococcus lucimarinus CCE9901 ... 56 8e-07
CU234118_971(CU234118|pid:none) Bradyrhizobium sp. ORS278,comple... 56 8e-07
(A5DU73) RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helic... 56 8e-07
CP001279_1502(CP001279|pid:none) Nautilia profundicola AmH, comp... 56 8e-07
(Q9D0R4) RecName: Full=Probable ATP-dependent RNA helicase DDX56... 56 8e-07
(Q84UQ1) RecName: Full=DEAD-box ATP-dependent RNA helicase 42; ... 56 8e-07
AE000782_2227(AE000782|pid:none) Archaeoglobus fulgidus DSM 4304... 56 8e-07
CP000576_1209(CP000576|pid:none) Prochlorococcus marinus str. MI... 56 8e-07
(Q0J7Y8) RecName: Full=DEAD-box ATP-dependent RNA helicase 45; ... 56 8e-07
FJ542313_1(FJ542313|pid:none) Bombyx mori strain Dazao clone 3 v... 56 8e-07
CP001615_579(CP001615|pid:none) Exiguobacterium sp. AT1b, comple... 56 8e-07
CP001068_806(CP001068|pid:none) Ralstonia pickettii 12J chromoso... 56 8e-07
CP000931_2990(CP000931|pid:none) Shewanella halifaxensis HAW-EB4... 56 1e-06
AE017125_1768(AE017125|pid:none) Helicobacter hepaticus ATCC 514... 56 1e-06
CP000825_1234(CP000825|pid:none) Prochlorococcus marinus str. MI... 56 1e-06
CR954247_397(CR954247|pid:none) Pseudoalteromonas haloplanktis s... 56 1e-06
AD2863(AD2863) dead-box ATP-dependent RNA helicase rhlE [importe... 56 1e-06
CP001015_687(CP001015|pid:none) Streptococcus pneumoniae G54, co... 56 1e-06
CP000821_2387(CP000821|pid:none) Shewanella sediminis HAW-EB3, c... 56 1e-06
(P0C2N8) RecName: Full=ATP-dependent RNA helicase drs-1; ... 56 1e-06
CP000083_36(CP000083|pid:none) Colwellia psychrerythraea 34H, co... 56 1e-06
CP000697_2601(CP000697|pid:none) Acidiphilium cryptum JF-5, comp... 56 1e-06
CP000790_1743(CP000790|pid:none) Vibrio harveyi ATCC BAA-1116 ch... 56 1e-06
CP000937_1787(CP000937|pid:none) Francisella philomiragia subsp.... 56 1e-06
CP000851_2914(CP000851|pid:none) Shewanella pealeana ATCC 700345... 56 1e-06
CP000447_2136(CP000447|pid:none) Shewanella frigidimarina NCIMB ... 56 1e-06
(Q7SH33) RecName: Full=Pre-mRNA-processing ATP-dependent RNA hel... 56 1e-06
CP000821_1592(CP000821|pid:none) Shewanella sediminis HAW-EB3, c... 56 1e-06
CP001252_2643(CP001252|pid:none) Shewanella baltica OS223, compl... 56 1e-06
CP000774_2471(CP000774|pid:none) Parvibaculum lavamentivorans DS... 56 1e-06
AE005672_718(AE005672|pid:none) Streptococcus pneumoniae TIGR4, ... 56 1e-06
CU914168_1894(CU914168|pid:none) Ralstonia solanacearum strain I... 56 1e-06
CP000920_701(CP000920|pid:none) Streptococcus pneumoniae P1031, ... 56 1e-06
AC159443_42(AC159443|pid:none) Trypanosoma brucei chromosome 5 c... 56 1e-06
CP000806_4432(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 56 1e-06
CR954208_313(CR954208|pid:none) Ostreococcus tauri strain OTTH05... 56 1e-06
CP000503_2227(CP000503|pid:none) Shewanella sp. W3-18-1, complet... 56 1e-06
AE007317_670(AE007317|pid:none) Streptococcus pneumoniae R6, com... 56 1e-06
AY773078_1(AY773078|pid:none) Carassius auratus gibelio Vasa (va... 56 1e-06
(Q5ACK7) RecName: Full=ATP-dependent RNA helicase DRS1; ... 56 1e-06
BA000031_903(BA000031|pid:none) Vibrio parahaemolyticus RIMD 221... 56 1e-06
CP000742_1606(CP000742|pid:none) Methanococcus vannielii SB, com... 56 1e-06
CP000090_896(CP000090|pid:none) Ralstonia eutropha JMP134 chromo... 56 1e-06
BC074323_1(BC074323|pid:none) Xenopus laevis MGC84147 protein, m... 56 1e-06
(Q5KIK3) RecName: Full=ATP-dependent RNA helicase DRS1; ... 56 1e-06
(Q7Y183) RecName: Full=DEAD-box ATP-dependent RNA helicase 10; ... 56 1e-06
CP001185_949(CP001185|pid:none) Thermosipho africanus TCF52B, co... 56 1e-06
CP000151_2167(CP000151|pid:none) Burkholderia sp. 383 chromosome... 56 1e-06
CP001097_528(CP001097|pid:none) Chlorobium limicola DSM 245, com... 56 1e-06
FN357511_7(FN357511|pid:none) Schistosoma mansoni genome sequenc... 56 1e-06
CP000570_2445(CP000570|pid:none) Burkholderia pseudomallei 668 c... 55 1e-06
BA000038_1159(BA000038|pid:none) Vibrio vulnificus YJ016 DNA, ch... 55 1e-06
CP000380_542(CP000380|pid:none) Burkholderia cenocepacia AU 1054... 55 1e-06
CP000250_1789(CP000250|pid:none) Rhodopseudomonas palustris HaA2... 55 1e-06
X52648_1(X52648|pid:none) Schizosaccharomyces pombe p68 gene for... 55 1e-06
AE014134_3451(AE014134|pid:none) Drosophila melanogaster chromos... 55 1e-06
U13070_1(U13070|pid:none) Caenorhabditis elegans cosmid F01F1, c... 55 1e-06
AE008692_1214(AE008692|pid:none) Zymomonas mobilis subsp. mobili... 55 1e-06
CP000644_2098(CP000644|pid:none) Aeromonas salmonicida subsp. sa... 55 1e-06
(P34580) RecName: Full=Putative ATP-dependent RNA helicase T26G1... 55 1e-06
CP000158_690(CP000158|pid:none) Hyphomonas neptunium ATCC 15444,... 55 1e-06
(Q58083) RecName: Full=Probable ATP-dependent RNA helicase MJ066... 55 1e-06
CP000412_279(CP000412|pid:none) Lactobacillus delbrueckii subsp.... 55 1e-06
(A5DY34) RecName: Full=ATP-dependent RNA helicase DRS1; ... 55 1e-06
CP000551_1204(CP000551|pid:none) Prochlorococcus marinus str. AS... 55 1e-06
AY121677_1(AY121677|pid:none) Drosophila melanogaster RE27528 fu... 55 1e-06
AB047382_1(AB047382|pid:none) Hydra magnipapillata mRNA for vasa... 55 1e-06
CP000416_486(CP000416|pid:none) Lactobacillus brevis ATCC 367, c... 55 1e-06
(Q4IJ56) RecName: Full=ATP-dependent RNA helicase DBP9; ... 55 1e-06
CP000958_2046(CP000958|pid:none) Burkholderia cenocepacia MC0-3 ... 55 1e-06
AL935253_122(AL935253|pid:none) Lactobacillus plantarum strain W... 55 1e-06
CR940353_707(CR940353|pid:none) Theileria annulata strain Ankara... 55 1e-06
CP000094_5278(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 55 1e-06
GQ140633_1(GQ140633|pid:none) Ctenopharyngodon idella vasa mRNA,... 55 1e-06
(A2QI25) RecName: Full=ATP-dependent RNA helicase ded1; ... 55 1e-06
BX548175_1420(BX548175|pid:none) Prochlorococcus marinus MIT9313... 55 1e-06
CP000440_2071(CP000440|pid:none) Burkholderia ambifaria AMMD chr... 55 1e-06
CP001055_760(CP001055|pid:none) Elusimicrobium minutum Pei191, c... 55 1e-06
CP000613_846(CP000613|pid:none) Rhodospirillum centenum SW, comp... 55 1e-06
(Q54QS3) RecName: Full=Probable ATP-dependent RNA helicase ddx3;... 55 1e-06
CP000086_1963(CP000086|pid:none) Burkholderia thailandensis E264... 55 1e-06
CP000117_640(CP000117|pid:none) Anabaena variabilis ATCC 29413, ... 55 1e-06
(Q66HG7) RecName: Full=Probable ATP-dependent RNA helicase DDX59... 55 1e-06
(Q0CIQ3) RecName: Full=ATP-dependent rRNA helicase rrp3; ... 55 1e-06
CP000572_2497(CP000572|pid:none) Burkholderia pseudomallei 1106a... 55 1e-06
CP000089_875(CP000089|pid:none) Dechloromonas aromatica RCB, com... 55 1e-06
CP000133_3112(CP000133|pid:none) Rhizobium etli CFN 42, complete... 55 1e-06
CP001097_1785(CP001097|pid:none) Chlorobium limicola DSM 245, co... 55 1e-06
(P24782) RecName: Full=ATP-dependent RNA helicase dbp2; ... 55 1e-06
CP000124_2581(CP000124|pid:none) Burkholderia pseudomallei 1710b... 55 1e-06
CP001503_1191(CP001503|pid:none) Burkholderia glumae BGR1 chromo... 55 1e-06
AP009385_1982(AP009385|pid:none) Burkholderia multivorans ATCC 1... 55 1e-06
AM920431_1322(AM920431|pid:none) Penicillium chrysogenum Wiscons... 55 1e-06
BT062748_1(BT062748|pid:none) Zea mays full-length cDNA clone ZM... 55 2e-06
CP000282_3192(CP000282|pid:none) Saccharophagus degradans 2-40, ... 55 2e-06
AF487524_1(AF487524|pid:none) Vibrio fischeri ATP-dependent RNA ... 55 2e-06
CP000283_3494(CP000283|pid:none) Rhodopseudomonas palustris BisB... 55 2e-06
CP000302_1406(CP000302|pid:none) Shewanella denitrificans OS217,... 55 2e-06
AK133731_1(AK133731|pid:none) Mus musculus 8 days embryo whole b... 55 2e-06
CP000555_2082(CP000555|pid:none) Methylibium petroleiphilum PM1,... 55 2e-06
FM954973_753(FM954973|pid:none) Vibrio splendidus LGP32 chromoso... 55 2e-06
CP000139_1253(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,... 55 2e-06
(Q7RY59) RecName: Full=ATP-dependent rRNA helicase rrp-3; ... 55 2e-06
CP000612_35(CP000612|pid:none) Desulfotomaculum reducens MI-1, c... 55 2e-06
CP000582_291(CP000582|pid:none) Ostreococcus lucimarinus CCE9901... 55 2e-06
(A5DZT7) RecName: Full=ATP-dependent RNA helicase DBP10; ... 55 2e-06
AF335569_1(AF335569|pid:none) Homo sapiens helicain C mRNA, comp... 55 2e-06
(A7EML8) RecName: Full=ATP-dependent rRNA helicase rrp3; ... 55 2e-06
AE005673_832(AE005673|pid:none) Caulobacter crescentus CB15, com... 55 2e-06
CP000680_3701(CP000680|pid:none) Pseudomonas mendocina ymp, comp... 55 2e-06
(A1D405) RecName: Full=ATP-dependent rRNA helicase rrp3; ... 55 2e-06
CT005272_190(CT005272|pid:none) Leishmania major strain Friedlin... 55 2e-06
AY847069_1(AY847069|pid:none) Toxoplasma gondii DEAD box RNA hel... 55 2e-06
CR555306_2554(CR555306|pid:none) Azoarcus sp. EbN1 complete geno... 55 2e-06
AC146793_11(AC146793|pid:none) Medicago truncatula clone mth2-10... 55 2e-06
AP008937_520(AP008937|pid:none) Lactobacillus fermentum IFO 3956... 55 2e-06
(Q9DBN9) RecName: Full=Probable ATP-dependent RNA helicase DDX59... 55 2e-06
CP000472_1591(CP000472|pid:none) Shewanella piezotolerans WP3, c... 55 2e-06
AK013179_1(AK013179|pid:none) Mus musculus 10, 11 days embryo wh... 55 2e-06
(Q96SX5) RecName: Full=Probable ATP-dependent RNA helicase DDX31... 55 2e-06
FJ011707_1(FJ011707|pid:none) Bombyx mori strain Jam124 vasa-lik... 55 2e-06
(Q6H874) RecName: Full=DEAD-box ATP-dependent RNA helicase 47A; ... 55 2e-06
BC012726_1(BC012726|pid:none) Homo sapiens DEAD (Asp-Glu-Ala-Asp... 55 2e-06
AM039952_3733(AM039952|pid:none) Xanthomonas campestris pv. vesi... 55 2e-06
CP001348_124(CP001348|pid:none) Clostridium cellulolyticum H10, ... 55 2e-06
AE017198_273(AE017198|pid:none) Lactobacillus johnsonii NCC 533,... 55 2e-06
AK302670_1(AK302670|pid:none) Homo sapiens cDNA FLJ59786 complet... 55 2e-06
CP000510_810(CP000510|pid:none) Psychromonas ingrahamii 37, comp... 55 2e-06
CP000413_256(CP000413|pid:none) Lactobacillus gasseri ATCC 33323... 55 2e-06
CP000302_3007(CP000302|pid:none) Shewanella denitrificans OS217,... 55 2e-06
AM180355_2177(AM180355|pid:none) Clostridium difficile 630 compl... 55 2e-06
(Q1E1N5) RecName: Full=ATP-dependent rRNA helicase RRP3; ... 55 2e-06
(Q6FP38) RecName: Full=ATP-dependent RNA helicase DBP1; ... 55 2e-06
AF335568_1(AF335568|pid:none) Homo sapiens helicain B mRNA, comp... 55 2e-06
CP000254_1755(CP000254|pid:none) Methanospirillum hungatei JF-1,... 55 2e-06
BT033536_1(BT033536|pid:none) Zea mays full-length cDNA clone ZM... 55 2e-06
CP000115_313(CP000115|pid:none) Nitrobacter winogradskyi Nb-255,... 55 2e-06
(Q4L7W0) RecName: Full=Probable DEAD-box ATP-dependent RNA helic... 55 2e-06
AL646052_953(AL646052|pid:none) Ralstonia solanacearum GMI1000 c... 55 2e-06
(A6QRQ7) RecName: Full=ATP-dependent rRNA helicase RRP3; ... 55 2e-06
(Q9P7C7) RecName: Full=Pre-mRNA-processing ATP-dependent RNA hel... 55 2e-06
AK291916_1(AK291916|pid:none) Homo sapiens cDNA FLJ77346 complet... 55 2e-06
CP000302_882(CP000302|pid:none) Shewanella denitrificans OS217, ... 55 2e-06
AC024876_4(AC024876|pid:none) Caenorhabditis elegans cosmid Y94H... 55 2e-06
BX640434_6(BX640434|pid:none) Bordetella parapertussis strain 12... 55 2e-06
AE008922_587(AE008922|pid:none) Xanthomonas campestris pv. campe... 55 2e-06
(Q5ACU6) RecName: Full=ATP-dependent rRNA helicase RRP3; ... 55 2e-06
BA000043_2475(BA000043|pid:none) Geobacillus kaustophilus HTA426... 55 2e-06
FM992695_847(FM992695|pid:none) Candida dubliniensis CD36 chromo... 55 2e-06
CP001390_2718(CP001390|pid:none) Geobacter sp. FRC-32, complete ... 55 2e-06
(Q54TD7) RecName: Full=ATP-dependent RNA helicase ddx24; ... 55 2e-06

>AE015929_1245(AE015929|pid:none) Staphylococcus epidermidis ATCC
12228, complete genome.
&CP000029_1100(CP000029|pid:none)
Length = 448

Score = 70.5 bits (171), Expect = 4e-11
Identities = 31/64 (48%), Positives = 46/64 (71%)
Frame = +1

Query: 280 KNDFKEFGLSNELIESIKENNWEKPTDVQKQVIPLIFKGRNTVFSSVTGSGKTGAYLLPF 459
K+ F+ F L LIE++K N+EKPT++Q ++IP I KG N + S TG+GK+ A+LLP
Sbjct: 3 KHPFEHFNLDENLIEAVKNLNFEKPTEIQNRIIPRILKGTNLIGQSQTGTGKSHAFLLPL 62

Query: 460 IQIL 471
IQ++
Sbjct: 63 IQLI 66

Lambda K H
0.312 0.132 0.371

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 622,233,466
Number of extensions: 10434969
Number of successful extensions: 35447
Number of sequences better than 10.0: 2943
Number of HSP's gapped: 35321
Number of HSP's successfully gapped: 2947
Length of query: 220
Length of database: 1,040,966,779
Length adjustment: 124
Effective length of query: 96
Effective length of database: 643,635,439
Effective search space: 61789002144
Effective search space used: 61789002144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.46 gvh: 0.50 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.52 mip: 0.11
nuc: 0.00 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: mitochondrial
24.0 %: cytoplasmic
24.0 %: nuclear
4.0 %: peroxisomal

>> prediction for Contig-U06783-1 is mit

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0