Contig-U06768-1
Contig ID Contig-U06768-1
Contig update 2001. 8.30
Contig sequence
>Contig-U06768-1 (Contig-U06768-1Q) /CSM_Contig/Contig-U06768-1Q.Seq.d
CCCGCGTCCGAAAAAAAACACAAAAAATGATTTCAAGATTAATTAAACAA
ACAACAAAAGTTAACCAAATTATAACATTTTGTTCAATTACTAATGATCC
AAAAGGAGATAAAATTAGAGATTTATTAAATACAGCTTTAAAACCATCAA
CATTAAATGTTATAGATATGTCTGGTGGTTGTGGTTCTATGTATAAAATT
GAAATTGTATCACCAGAATTTAAAGGTAAATCAATGATAAATCAACATAG
AAAAGTTAATCAAATTTTAAAAAGTGTCATACCGTCACTCCATGGTTTAA
CTTTAGTTACTAAATCTGATGAATAAATAATAAAAATAATTAATAATAAT
GGTAATAAAAAAATAAACTTTACAACATGTATATTTGCAAATAAATATGT
ATATGCATATATATATACTGAGAGTTATCTCTCCTTTTTATTGTTTTAAA
AAAAAA

Gap no gap
Contig length 456
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 4577728
End point 4578161
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 2
Link to clone list U06768
List of clone(s)

est1=VSG122F,1,457
est2=VSG122Z,11,415
Translated Amino Acid sequence
RVRKKTQKMISRLIKQTTKVNQIITFCSITNDPKGDKIRDLLNTALKPSTLNVIDMSGGC
GSMYKIEIVSPEFKGKSMINQHRKVNQILKSVIPSLHGLTLVTKSDE*iikiinnngnkk
infttcifankyvyayiytesylsfllf*kk


Translated Amino Acid sequence (All Frames)
Frame A:
pasekkhkk*fqd*lnkqqkltkl*hfvqllmiqkeikleiy*iql*nhqh*ml*iclvv
vvlciklklyhqnlkvnq**inieklikf*kvsyrhsmv*l*llnlmnk**k*liimvik
k*tlqhvylqinmymhiyilrvispfycfkkk


Frame B:
prpkkntkndfkin*tnnks*pnynilfny**skrr*n*rfikysfktinikcyryvwwl
wfyv*n*ncitri*r*indkst*ks*snfkkchtvtpwfnfsy*i**innknn***w**k
nklynmyick*iciciyiy*elsllfivlkk


Frame C:
RVRKKTQKMISRLIKQTTKVNQIITFCSITNDPKGDKIRDLLNTALKPSTLNVIDMSGGC
GSMYKIEIVSPEFKGKSMINQHRKVNQILKSVIPSLHGLTLVTKSDE*iikiinnngnkk
infttcifankyvyayiytesylsfllf*kk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U06768-1 (Contig-U06768-1Q)
/CSM_Contig/Contig-U06768-1Q.Seq.d
(456 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U06768-1 (Contig-U06768-1Q) /CSM_Contig/Conti... 581 e-166
Contig-U13088-1 (Contig-U13088-1Q) /CSM_Contig/Conti... 38 0.008
Contig-U10257-1 (Contig-U10257-1Q) /CSM_Contig/Conti... 36 0.032
Contig-U07041-1 (Contig-U07041-1Q) /CSM_Contig/Conti... 36 0.032
Contig-U02783-1 (Contig-U02783-1Q) /CSM_Contig/Conti... 36 0.032
Contig-U14332-1 (Contig-U14332-1Q) /CSM_Contig/Conti... 34 0.12
Contig-U10744-1 (Contig-U10744-1Q) /CSM_Contig/Conti... 34 0.12
Contig-U10325-1 (Contig-U10325-1Q) /CSM_Contig/Conti... 34 0.12
Contig-U06612-1 (Contig-U06612-1Q) /CSM_Contig/Conti... 34 0.12
Contig-U06183-1 (Contig-U06183-1Q) /CSM_Contig/Conti... 34 0.12

>Contig-U06768-1 (Contig-U06768-1Q) /CSM_Contig/Contig-U06768-1Q.Seq.d
Length = 456

Score = 581 bits (293), Expect = e-166
Identities = 293/293 (100%)
Strand = Plus / Plus


Query: 28 tgatttcaagattaattaaacaaacaacaaaagttaaccaaattataacattttgttcaa 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28 tgatttcaagattaattaaacaaacaacaaaagttaaccaaattataacattttgttcaa 87


Query: 88 ttactaatgatccaaaaggagataaaattagagatttattaaatacagctttaaaaccat 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 ttactaatgatccaaaaggagataaaattagagatttattaaatacagctttaaaaccat 147


Query: 148 caacattaaatgttatagatatgtctggtggttgtggttctatgtataaaattgaaattg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 caacattaaatgttatagatatgtctggtggttgtggttctatgtataaaattgaaattg 207


Query: 208 tatcaccagaatttaaaggtaaatcaatgataaatcaacatagaaaagttaatcaaattt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 tatcaccagaatttaaaggtaaatcaatgataaatcaacatagaaaagttaatcaaattt 267


Query: 268 taaaaagtgtcataccgtcactccatggtttaactttagttactaaatctgat 320
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 taaaaagtgtcataccgtcactccatggtttaactttagttactaaatctgat 320


Score = 60.0 bits (30), Expect = 2e-09
Identities = 30/30 (100%)
Strand = Plus / Plus


Query: 418 ctgagagttatctctcctttttattgtttt 447
||||||||||||||||||||||||||||||
Sbjct: 418 ctgagagttatctctcctttttattgtttt 447


Score = 32.2 bits (16), Expect = 0.49
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 364 taaactttacaacatg 379
||||||||||||||||
Sbjct: 364 taaactttacaacatg 379


>Contig-U13088-1 (Contig-U13088-1Q) /CSM_Contig/Contig-U13088-1Q.Seq.d
Length = 427

Score = 38.2 bits (19), Expect = 0.008
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 255 gttaatcaaattttaaaaa 273
|||||||||||||||||||
Sbjct: 385 gttaatcaaattttaaaaa 403


>Contig-U10257-1 (Contig-U10257-1Q) /CSM_Contig/Contig-U10257-1Q.Seq.d
Length = 1350

Score = 36.2 bits (18), Expect = 0.032
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 257 taatcaaattttaaaaag 274
||||||||||||||||||
Sbjct: 41 taatcaaattttaaaaag 58


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6813
Number of Sequences: 6905
Number of extensions: 6813
Number of successful extensions: 826
Number of sequences better than 10.0: 279
length of query: 456
length of database: 5,674,871
effective HSP length: 16
effective length of query: 440
effective length of database: 5,564,391
effective search space: 2448332040
effective search space used: 2448332040
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11. 9
Homology vs DNA
Query= Contig-U06768-1 (Contig-U06768-1Q) /CSM_Contig/Contig-U06768-1Q.Seq.d
(456 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU265997) Dictyostelium discoideum vegetative cDNA clone:VS... 484 e-143 2
(AU265998) Dictyostelium discoideum vegetative cDNA clone:VS... 484 e-132 1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 293 e-124 4
(AC178947) Strongylocentrotus purpuratus clone R3-3121F16, W... 48 0.27 1
(CW090888) 104_448_10958178_114_32150_046 Sorghum methylatio... 48 0.27 1
(CW087050) 104_431_10947372_116_33021_042 Sorghum methylatio... 48 0.27 1
(BX664725) Human DNA sequence from clone RP11-96J15 on chrom... 40 0.44 2
(EJ628983) 1092963285882 Global-Ocean-Sampling_GS-29-01-01-1... 44 0.50 2
(AC090196) Homo sapiens chromosome 8, clone RP11-766A10, com... 40 0.68 3
(AC159236) Mus musculus BAC clone RP24-447C11 from chromosom... 46 1.1 1
(EK369908) 1095469412702 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.1 1
(EK366989) 1095469401558 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.1 1
(CD769998) AGENCOURT_14709330 NIH_MGC_190 Mus musculus cDNA ... 46 1.1 1
(AC112856) Rattus norvegicus clone CH230-249K19, *** SEQUENC... 40 1.2 2
(AC110841) Rattus norvegicus clone CH230-210N10, *** SEQUENC... 40 1.3 3
(AC068478) Homo sapiens chromosome 4 clone RP11-393M11 map 4... 34 2.2 2
(AC180773) Strongylocentrotus purpuratus clone R3-3073O14, W... 32 2.2 2
(AC176108) Strongylocentrotus purpuratus clone R3-3023H12, W... 32 2.2 2
(AC114766) Homo sapiens BAC clone RP11-393M11 from 4, comple... 34 2.2 2
(AC021240) Homo sapiens clone RP11-344N2, WORKING DRAFT SEQU... 40 2.5 3
(AC069139) Homo sapiens chromosome 8 clone RP11-813B8, WORKI... 36 2.6 7
(EX001646) BGBV-aae42h11.g1 Snail_EST_pSMART Biomphalaria gl... 32 2.9 2
(AY268139) Hordeum vulgare BAC 184G9, complete sequece. 44 4.3 1
(AM444341) Vitis vinifera contig VV78X037125.3, whole genome... 44 4.3 1
(AM436404) Vitis vinifera contig VV78X261233.35, whole genom... 44 4.3 1
(AC137668) Medicago truncatula clone mth2-5f8, complete sequ... 44 4.3 1
(AC130084) Rattus norvegicus clone CH230-35P7, WORKING DRAFT... 44 4.3 1
(AC098026) Rattus norvegicus clone CH230-93E23, WORKING DRAF... 44 4.3 1
(CU463069) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.3 1
(CU407251) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.3 1
(AC182544) Dasypus novemcinctus clone VMRC5-132L2, WORKING D... 44 4.3 1
(AC016133) Drosophila melanogaster strain y chromosome X clo... 44 4.3 1
(EK222135) 1095460144178 Global-Ocean-Sampling_GS-31-01-01-1... 44 4.3 1
(EK018620) 1092955257234 Global-Ocean-Sampling_GS-31-01-01-1... 44 4.3 1
(EK006230) 1092955097773 Global-Ocean-Sampling_GS-31-01-01-1... 44 4.3 1
(EJ628894) 1092963282810 Global-Ocean-Sampling_GS-29-01-01-1... 44 4.3 1
(DU155477) OG_ABa0037P04.r OG_ABa Oryza granulata genomic cl... 44 4.3 1
(CW470824) fsbb001f224e04f0 Sorghum methylation filtered lib... 44 4.3 1
(CT339615) Sus scrofa genomic clone CH242-314H15, genomic su... 44 4.3 1
(DR437041) ACAB-aaa57e10.g1 Hydra UCI6- barcoded EST's Hydra... 44 4.3 1
(DC431518) Cryptomeria japonica cDNA, clone: CC14115, 5' end... 44 4.3 1
(AU084152) Cryptomeria japonica mRNA, clone:CC0961, 5' end, ... 44 4.3 1
(CX834184) ACAC-aaa58a12.g1 Hydra EST UCI 7 Hydra magnipapil... 44 4.3 1
(CD395567) Gm_ck15594 Soybean induced by Salicylic Acid Glyc... 44 4.3 1
(CA919200) EST636918 MTUS Medicago truncatula cDNA clone MTU... 44 4.3 1
(CA261838) SCBGLB2014C03.g LB2 Saccharum officinarum cDNA cl... 44 4.3 1
(CA261837) SCBGLB2014C02.g LB2 Saccharum officinarum cDNA cl... 44 4.3 1
(BY892542) Cryptomeria japonica cDNA clone: CMFL041_C11, 5'e... 44 4.3 1
(BY886227) Cryptomeria japonica cDNA clone: CMFL023_M24, 5'e... 44 4.3 1
(BY884368) Cryptomeria japonica cDNA clone: CMFL018_M03, 5'e... 44 4.3 1
(BW987920) Chamaecyparis obtusa cDNA, clone: CO01260, 5' end... 44 4.3 1
(BM815267) EST593361 BNIR Medicago truncatula/Meloidogyne in... 44 4.3 1
(BM307672) sak32c12.y1 Gm-c1075 Glycine max cDNA clone SOYBE... 44 4.3 1
(BI969734) GM830009A11A01 Gm-r1083 Glycine max cDNA clone Gm... 44 4.3 1
(BI787093) sag71c07.y1 Gm-c1082 Glycine max cDNA clone GENOM... 44 4.3 1
(BG507548) sac60h07.y1 Gm-c1062 Glycine max cDNA clone GENOM... 44 4.3 1
(BG155204) sab41c08.y1 Gm-c1026 Glycine max cDNA clone GENOM... 44 4.3 1
(BF296311) 035PbC08 Pb cDNA #17, Tommaso Pace, Marta Ponzi, ... 44 4.3 1
(BE821140) GM700014A20A12 Gm-r1070 Glycine max cDNA clone Gm... 44 4.3 1
(BB976849) Plasmodium berghei strain ANKA cDNA clone:OK00678... 44 4.3 1
(FE689444) Pv012B_M13R_F05.ab1 Phaseolus vulgaris cv Early g... 44 4.3 1
(AW509320) sh94b05.y1 Gm-c1016 Glycine max cDNA clone GENOME... 44 4.3 1
(EX926256) lb64c12.g1 Cycas ovule - normalized (NYBG) Cycas ... 44 4.3 1
(EK197507) 1095460044565 Global-Ocean-Sampling_GS-31-01-01-1... 38 6.2 2
(AC166674) Bos taurus clone CH240-182A9, WORKING DRAFT SEQUE... 40 6.8 4
(AC092492) Drosophila melanogaster, chromosome 2L, region 30... 40 8.1 3
(AC112948) Mus musculus chromosome 8, clone RP23-299I18, com... 40 9.0 4
(AC156885) Bos taurus clone CH240-65E21, WORKING DRAFT SEQUE... 36 9.2 4

>(AU265997) Dictyostelium discoideum vegetative cDNA clone:VSG122,
5' end single read.
Length = 457

Score = 484 bits (244), Expect(2) = e-143
Identities = 244/244 (100%)
Strand = Plus / Plus


Query: 78 ttttgttcaattactaatgatccaaaaggagataaaattagagatttattaaatacagct 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 ttttgttcaattactaatgatccaaaaggagataaaattagagatttattaaatacagct 137


Query: 138 ttaaaaccatcaacattaaatgttatagatatgtctggtggttgtggttctatgtataaa 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 ttaaaaccatcaacattaaatgttatagatatgtctggtggttgtggttctatgtataaa 197


Query: 198 attgaaattgtatcaccagaatttaaaggtaaatcaatgataaatcaacatagaaaagtt 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 attgaaattgtatcaccagaatttaaaggtaaatcaatgataaatcaacatagaaaagtt 257


Query: 258 aatcaaattttaaaaagtgtcataccgtcactccatggtttaactttagttactaaatct 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aatcaaattttaaaaagtgtcataccgtcactccatggtttaactttagttactaaatct 317


Query: 318 gatg 321
||||
Sbjct: 318 gatg 321

Score = 60.0 bits (30), Expect(2) = e-143
Identities = 30/30 (100%)
Strand = Plus / Plus


Query: 418 ctgagagttatctctcctttttattgtttt 447
||||||||||||||||||||||||||||||
Sbjct: 418 ctgagagttatctctcctttttattgtttt 447

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 375,511,962
Number of extensions: 24821223
Number of successful extensions: 2100496
Number of sequences better than 10.0: 68
Length of query: 456
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 433
Effective length of database: 93,106,754,628
Effective search space: 40315224753924
Effective search space used: 40315224753924
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 6.22
Homology vs Protein
Query= Contig-U06768-1 (Contig-U06768-1Q) /CSM_Contig/Contig-U06768-1Q.Seq.d
(456 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AM494961_212(AM494961|pid:none) Leishmania braziliensis chromoso... 76 4e-13
FN392321_717(FN392321|pid:none) Pichia pastoris GS115 chromosome... 74 1e-12
CT005263_204(CT005263|pid:none) Leishmania major strain Friedlin... 74 2e-12
AE016817_796(AE016817|pid:none) Ashbya gossypii (= Eremothecium ... 73 3e-12
AP006852_133(AP006852|pid:none) Candida albicans genomic DNA, ch... 72 5e-12
CP000500_507(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 71 1e-11
(P39724) RecName: Full=Uncharacterized bolA-like protein YAL046C... 69 5e-11
CR380959_533(CR380959|pid:none) Candida glabrata strain CBS138 c... 69 5e-11
BC078189_1(BC078189|pid:none) Danio rerio zgc:100870, mRNA (cDNA... 68 1e-10
AC159405_30(AC159405|pid:none) Trypanosoma brucei chromosome 8 c... 65 6e-10
AB016893_3(AB016893|pid:none) Arabidopsis thaliana genomic DNA, ... 65 7e-10
CR382135_739(CR382135|pid:none) Debaryomyces hansenii strain CBS... 65 1e-09
(Q8CEI1) RecName: Full=BolA-like protein 3; &AK028102_1(AK02810... 63 4e-09
(Q53S33) RecName: Full=BolA-like protein 3; &AC073263_3(AC07326... 63 4e-09
CR761390_1(CR761390|pid:none) Xenopus tropicalis finished cDNA, ... 62 5e-09
BC135597_1(BC135597|pid:none) Xenopus tropicalis hypothetical pr... 62 5e-09
(O14280) RecName: Full=Uncharacterized bolA-like protein C8C9.11... 62 8e-09
AE017342_420(AE017342|pid:none) Cryptococcus neoformans var. neo... 61 1e-08
EF085639_1(EF085639|pid:none) Picea sitchensis clone WS02730_D07... 60 2e-08
AM920437_442(AM920437|pid:none) Penicillium chrysogenum Wisconsi... 60 2e-08
CU633900_55(CU633900|pid:none) Podospora anserina genomic DNA ch... 60 2e-08
AL132876_19(AL132876|pid:none) Caenorhabditis elegans YAC Y105E8... 59 7e-08
FN316920_1(FN316920|pid:none) Schistosoma japonicum isolate Anhu... 58 1e-07
CR382130_825(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 57 2e-07
CR940353_242(CR940353|pid:none) Theileria annulata strain Ankara... 57 3e-07
AM270115_25(AM270115|pid:none) Aspergillus niger contig An06c009... 56 3e-07
FN357311_16(FN357311|pid:none) Schistosoma mansoni genome sequen... 56 3e-07
CR954212_141(CR954212|pid:none) Ostreococcus tauri strain OTTH05... 56 4e-07
BT077168_1(BT077168|pid:none) Caligus rogercresseyi clone crog-e... 55 6e-07
AM427554_1(AM427554|pid:none) Vitis vinifera contig VV78X006089.... 55 8e-07
T24859(T24859)hypothetical protein T12D8.3 - Caenorhabditis eleg... 55 1e-06
AE017347_235(AE017347|pid:none) Cryptococcus neoformans var. neo... 52 8e-06
EU574844_1(EU574844|pid:none) Ornithodoros coriaceus clone OC-42... 50 2e-05
BT078718_1(BT078718|pid:none) Lepeophtheirus salmonis clone lsal... 49 4e-05
BC167635_1(BC167635|pid:none) Xenopus tropicalis hypothetical pr... 49 7e-05
AE013599_1613(AE013599|pid:none) Drosophila melanogaster chromos... 48 1e-04
CP000348_1237(CP000348|pid:none) Leptospira borgpetersenii serov... 47 3e-04
AM484444_1(AM484444|pid:none) Vitis vinifera contig VV78X083775.... 47 3e-04
EF676867_1(EF676867|pid:none) Picea sitchensis clone WS02756_I23... 46 5e-04
CR954246_2185(CR954246|pid:none) Pseudoalteromonas haloplanktis ... 45 8e-04
BT056367_1(BT056367|pid:none) Salmo salar clone ssal-evd-556-035... 45 0.001
BC077096_1(BC077096|pid:none) Danio rerio zgc:101119, mRNA (cDNA... 45 0.001
BX842649_194(BX842649|pid:none) Bdellovibrio bacteriovorus compl... 45 0.001
CP001016_3327(CP001016|pid:none) Beijerinckia indica subsp. indi... 45 0.001
AY341152_1(AY341152|pid:none) Anopheles gambiae clone L35_3 BolA... 44 0.001
CP000828_4778(CP000828|pid:none) Acaryochloris marina MBIC11017,... 44 0.001
BX571872_27(BX571872|pid:none) Photorhabdus luminescens subsp. l... 44 0.002
BT073042_1(BT073042|pid:none) Oncorhynchus mykiss clone omyk-evn... 44 0.002
CP001157_3367(CP001157|pid:none) Azotobacter vinelandii DJ, comp... 44 0.002
EF086141_1(EF086141|pid:none) Picea sitchensis clone WS02918_L23... 44 0.002
AF541963_8(AF541963|pid:none) Glycine max cv Williams 82 BAC clo... 44 0.002
CP000113_1966(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 44 0.002
CP000109_986(CP000109|pid:none) Thiomicrospira crunogena XCL-2, ... 43 0.003
AE017340_1048(AE017340|pid:none) Idiomarina loihiensis L2TR, com... 43 0.003
BA000039_874(BA000039|pid:none) Thermosynechococcus elongatus BP... 43 0.003
CP001349_6448(CP001349|pid:none) Methylobacterium nodulans ORS 2... 43 0.003
BC095718_1(BC095718|pid:none) Danio rerio zgc:112271, mRNA (cDNA... 43 0.004
(Q8BGS2) RecName: Full=BolA-like protein 2; &AK002662_1(AK00266... 43 0.004
EU975533_1(EU975533|pid:none) Zea mays clone 491846 EMB1374 mRNA... 43 0.004
BT004190_1(BT004190|pid:none) Arabidopsis thaliana clone RAFL15-... 42 0.005
AY496579_2(AY496579|pid:none) Uncultured bacterium clone pELP81 ... 42 0.005
(P53082) RecName: Full=Uncharacterized bolA-like protein YGL220W... 42 0.005
BX897699_950(BX897699|pid:none) Bartonella henselae strain Houst... 42 0.005
(Q84W65) RecName: Full=SufE-like protein, chloroplastic; AltName... 42 0.005
BT061494_1(BT061494|pid:none) Zea mays full-length cDNA clone ZM... 42 0.005
AE010300_2111(AE010300|pid:none) Leptospira interrogans serovar ... 42 0.005
CP000943_6164(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 42 0.007
CP001196_71(CP001196|pid:none) Oligotropha carboxidovorans OM5 s... 42 0.007
CP000462_1094(CP000462|pid:none) Aeromonas hydrophila subsp. hyd... 42 0.007
CP000031_1833(CP000031|pid:none) Ruegeria pomeroyi DSS-3, comple... 42 0.007
CP000781_4052(CP000781|pid:none) Xanthobacter autotrophicus Py2,... 42 0.009
AK059646_1(AK059646|pid:none) Oryza sativa Japonica Group cDNA c... 42 0.009
CP000133_2249(CP000133|pid:none) Rhizobium etli CFN 42, complete... 42 0.009
BC155042_1(BC155042|pid:none) Xenopus tropicalis hypothetical pr... 42 0.009
CP000319_483(CP000319|pid:none) Nitrobacter hamburgensis X14, co... 41 0.011
CU459003_3153(CU459003|pid:none) Magnetospirillum gryphiswaldens... 41 0.011
CP000774_2570(CP000774|pid:none) Parvibaculum lavamentivorans DS... 41 0.011
CP000697_2628(CP000697|pid:none) Acidiphilium cryptum JF-5, comp... 41 0.015
AL954747_914(AL954747|pid:none) Nitrosomonas europaea ATCC 19718... 41 0.015
AE004091_859(AE004091|pid:none) Pseudomonas aeruginosa PAO1, com... 41 0.015
CP001196_1434(CP001196|pid:none) Oligotropha carboxidovorans OM5... 41 0.015
CP000438_4265(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA... 41 0.015
AY657174_1(AY657174|pid:none) Synthetic construct Peudomonas aer... 41 0.015
CP000084_1121(CP000084|pid:none) Candidatus Pelagibacter ubique ... 40 0.019
CP000931_3160(CP000931|pid:none) Shewanella halifaxensis HAW-EB4... 40 0.019
CP000943_6(CP000943|pid:none) Methylobacterium sp. 4-46, complet... 40 0.019
DQ214382_1(DQ214382|pid:none) Taeniopygia guttata clone 0063P002... 40 0.019
CP000267_2353(CP000267|pid:none) Rhodoferax ferrireducens T118, ... 40 0.019
CP000240_2299(CP000240|pid:none) Synechococcus sp. JA-2-3B'a(2-1... 40 0.025
CP001616_799(CP001616|pid:none) Tolumonas auensis DSM 9187, comp... 40 0.025
CP000158_84(CP000158|pid:none) Hyphomonas neptunium ATCC 15444, ... 40 0.025
DQ214386_1(DQ214386|pid:none) Taeniopygia guttata clone 0058P006... 40 0.025
CP000781_124(CP000781|pid:none) Xanthobacter autotrophicus Py2, ... 40 0.025
CR378665_177(CR378665|pid:none) Photobacterium profundum SS9; se... 40 0.025
CP000319_1554(CP000319|pid:none) Nitrobacter hamburgensis X14, c... 40 0.025
AM260525_1211(AM260525|pid:none) Bartonella tribocorum CIP 10547... 40 0.025
CP000377_646(CP000377|pid:none) Silicibacter sp. TM1040, complet... 40 0.025
BX572594_181(BX572594|pid:none) Rhodopseudomonas palustris CGA00... 40 0.033
CP001001_3645(CP001001|pid:none) Methylobacterium radiotolerans ... 40 0.033
CP000472_1111(CP000472|pid:none) Shewanella piezotolerans WP3, c... 40 0.033
CP000758_2372(CP000758|pid:none) Ochrobactrum anthropi ATCC 4918... 39 0.043
CP001154_1688(CP001154|pid:none) Laribacter hongkongensis HLHK9,... 39 0.043
CR382136_240(CR382136|pid:none) Debaryomyces hansenii strain CBS... 39 0.043
BA000040_185(BA000040|pid:none) Bradyrhizobium japonicum USDA 11... 39 0.043
BT048027_1(BT048027|pid:none) Salmo salar clone ssal-rgb2-555-25... 39 0.043
CP000095_1415(CP000095|pid:none) Prochlorococcus marinus str. NA... 39 0.056
CU234118_2626(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl... 39 0.056
CP000316_2533(CP000316|pid:none) Polaromonas sp. JS666, complete... 39 0.056
CP000394_1671(CP000394|pid:none) Granulibacter bethesdensis CGDN... 39 0.056
CP000815_774(CP000815|pid:none) Paulinella chromatophora chromat... 39 0.056
CP000239_937(CP000239|pid:none) Synechococcus sp. JA-3-3Ab, comp... 39 0.056
CU928171_54(CU928171|pid:none) Kluyveromyces thermotolerans stra... 39 0.056
AP009384_3676(AP009384|pid:none) Azorhizobium caulinodans ORS 57... 39 0.056
CP000847_1147(CP000847|pid:none) Rickettsia akari str. Hartford,... 39 0.073
CP000103_2720(CP000103|pid:none) Nitrosospira multiformis ATCC 2... 39 0.073
CP000488_686(CP000488|pid:none) Candidatus Ruthia magnifica str.... 39 0.073
CP000951_535(CP000951|pid:none) Synechococcus sp. PCC 7002, comp... 39 0.073
CP000031_2784(CP000031|pid:none) Ruegeria pomeroyi DSS-3, comple... 39 0.073
CP000240_2638(CP000240|pid:none) Synechococcus sp. JA-2-3B'a(2-1... 38 0.096
CP000494_5066(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 38 0.096
CP000806_1809(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 38 0.096
CP000435_1119(CP000435|pid:none) Synechococcus sp. CC9311, compl... 38 0.096
CP000529_1815(CP000529|pid:none) Polaromonas naphthalenivorans C... 38 0.096
(Q9H3K6) RecName: Full=BolA-like protein 2; &AF060511_1(AF06051... 38 0.096
AB463446_1(AB463446|pid:none) Synthetic construct DNA, clone: pF... 38 0.096
BA000012_41(BA000012|pid:none) Mesorhizobium loti MAFF303099 DNA... 38 0.096
CP000115_399(CP000115|pid:none) Nitrobacter winogradskyi Nb-255,... 38 0.096
CP000053_1285(CP000053|pid:none) Rickettsia felis URRWXCal2, com... 38 0.13
(Q9ZCE4) RecName: Full=Uncharacterized protein RP812; &AJ235273... 38 0.13
CT971583_1374(CT971583|pid:none) Synechococcus WH7803 complete g... 38 0.13
AB3393(AB3393) bola protein family BMEI1128 [imported] - Brucell... 38 0.13
BX897700_727(BX897700|pid:none) Bartonella quintana str. Toulous... 38 0.13
AP005739_5(AP005739|pid:none) Oryza sativa Japonica Group genomi... 38 0.13
(P91375) RecName: Full=Putative bolA-like protein K11H12.1; &T3... 38 0.13
CP000097_1407(CP000097|pid:none) Synechococcus sp. CC9902, compl... 37 0.16
CP001349_8(CP001349|pid:none) Methylobacterium nodulans ORS 2060... 37 0.16
AK161878_1(AK161878|pid:none) Mus musculus adult male medulla ob... 37 0.16
CP000250_3693(CP000250|pid:none) Rhodopseudomonas palustris HaA2... 37 0.16
AP009247_677(AP009247|pid:none) Candidatus Vesicomyosocius okuta... 37 0.16
FP236842_2621(FP236842|pid:none) Erwinia pyrifoliae strain Ep1/9... 37 0.16
CP000463_138(CP000463|pid:none) Rhodopseudomonas palustris BisA5... 37 0.16
CU914168_1275(CU914168|pid:none) Ralstonia solanacearum strain I... 37 0.21
AP009384_2232(AP009384|pid:none) Azorhizobium caulinodans ORS 57... 37 0.21
CP001010_742(CP001010|pid:none) Polynucleobacter necessarius sub... 37 0.21
CP000235_126(CP000235|pid:none) Anaplasma phagocytophilum HZ, co... 37 0.21
CP000352_1860(CP000352|pid:none) Ralstonia metallidurans CH34, c... 37 0.21
AE005673_2486(AE005673|pid:none) Caulobacter crescentus CB15, co... 37 0.28
CP000076_4267(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 37 0.28
AE017354_1878(AE017354|pid:none) Legionella pneumophila subsp. p... 37 0.28
CP001298_3406(CP001298|pid:none) Methylobacterium chloromethanic... 37 0.28
CP000507_2535(CP000507|pid:none) Shewanella amazonensis SB2B, co... 37 0.28
BX572598_30(BX572598|pid:none) Rhodopseudomonas palustris CGA009... 37 0.28
CP000348_1236(CP000348|pid:none) Leptospira borgpetersenii serov... 37 0.28
CP001340_2587(CP001340|pid:none) Caulobacter crescentus NA1000, ... 37 0.28
CP000908_3190(CP000908|pid:none) Methylobacterium extorquens PA1... 37 0.28
AE017197_766(AE017197|pid:none) Rickettsia typhi str. Wilmington... 37 0.28
AF389294_1(AF389294|pid:none) Arabidopsis thaliana AT1g55800/F14... 36 0.36
CR628337_1889(CR628337|pid:none) Legionella pneumophila str. Len... 36 0.36
CU695238_450(CU695238|pid:none) Ralstonia solanacearum strain Mo... 36 0.36
CP001079_102(CP001079|pid:none) Anaplasma marginale str. Florida... 36 0.36
CP001248_18(CP001248|pid:none) Borrelia afzelii ACA-1 plasmid cp... 36 0.36
AL646052_1744(AL646052|pid:none) Ralstonia solanacearum GMI1000 ... 36 0.36
CP000581_549(CP000581|pid:none) Ostreococcus lucimarinus CCE9901... 36 0.36
CP000494_5522(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 36 0.48
CP001287_3239(CP001287|pid:none) Cyanothece sp. PCC 8801, comple... 36 0.48
CP000675_2006(CP000675|pid:none) Legionella pneumophila str. Cor... 36 0.48
CP000301_531(CP000301|pid:none) Rhodopseudomonas palustris BisB1... 36 0.48
AM181176_4223(AM181176|pid:none) Pseudomonas fluorescens SBW25 c... 36 0.48
AE016853_1697(AE016853|pid:none) Pseudomonas syringae pv. tomato... 36 0.48
CP000463_1604(CP000463|pid:none) Rhodopseudomonas palustris BisA... 36 0.48
CP000109_547(CP000109|pid:none) Thiomicrospira crunogena XCL-2, ... 35 0.62
CP001339_697(CP001339|pid:none) Thioalkalivibrio sp. HL-EbGR7, c... 35 0.62
EF145915_1(EF145915|pid:none) Populus trichocarpa clone WS0114_E... 35 0.62
AL591688_2684(AL591688|pid:none) Sinorhizobium meliloti 1021 com... 35 0.62
CP000738_2532(CP000738|pid:none) Sinorhizobium medicae WSM419, c... 35 0.62
CP000830_1196(CP000830|pid:none) Dinoroseobacter shibae DFL 12, ... 35 0.62
CP000087_19(CP000087|pid:none) Rickettsia bellii RML369-C, compl... 35 0.62
BX569691_196(BX569691|pid:none) Synechococcus sp. WH8102 complet... 35 0.62
AE003849_2436(AE003849|pid:none) Xylella fastidiosa 9a5c, comple... 35 0.62
AE008321_9(AE008321|pid:none) Agrobacterium tumefaciens str. C58... 35 0.81
CP001389_2665(CP001389|pid:none) Rhizobium sp. NGR234, complete ... 35 0.81
CP000100_1144(CP000100|pid:none) Synechococcus elongatus PCC 794... 35 0.81
CR382121_152(CR382121|pid:none) Kluyveromyces lactis strain NRRL... 35 0.81
AP008231_404(AP008231|pid:none) Synechococcus elongatus PCC 6301... 35 0.81
CP001277_52(CP001277|pid:none) Candidatus Hamiltonella defensa 5... 35 1.1
CP000614_1818(CP000614|pid:none) Burkholderia vietnamiensis G4 c... 35 1.1
(Q9KPS0) RecName: Full=Protein bolA; &AE003852_2262(AE003852|pi... 35 1.1
CP001326_50(CP001326|pid:none) Micromonas sp. RCC299 chromosome ... 35 1.1
CP000053_1039(CP000053|pid:none) Rickettsia felis URRWXCal2, com... 35 1.1
CP000094_4086(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 35 1.1
EF134045_1(EF134045|pid:none) Perkinsus chesapeaki isolate Pch_c... 35 1.1
CP000157_657(CP000157|pid:none) Erythrobacter litoralis HTCC2594... 35 1.1
CP000821_3424(CP000821|pid:none) Shewanella sediminis HAW-EB3, c... 35 1.1
CP001485_1014(CP001485|pid:none) Vibrio cholerae MJ-1236 chromos... 35 1.1
CP001227_258(CP001227|pid:none) Rickettsia peacockii str. Rustic... 34 1.4
CP000521_120(CP000521|pid:none) Acinetobacter baumannii ATCC 179... 34 1.4
CU468135_2512(CU468135|pid:none) Erwinia tasmaniensis strain ET1... 34 1.4
CP000450_828(CP000450|pid:none) Nitrosomonas eutropha C91, compl... 34 1.4
CP001132_2578(CP001132|pid:none) Acidithiobacillus ferrooxidans ... 34 1.4
CP001182_161(CP001182|pid:none) Acinetobacter baumannii AB0057, ... 34 1.4
AM999887_138(AM999887|pid:none) Wolbachia endosymbiont of Culex ... 34 1.4
AE015451_1743(AE015451|pid:none) Pseudomonas putida KT2440 compl... 34 1.4
CP000613_961(CP000613|pid:none) Rhodospirillum centenum SW, comp... 34 1.4
AE016825_439(AE016825|pid:none) Chromobacterium violaceum ATCC 1... 34 1.4
CP000941_1464(CP000941|pid:none) Xylella fastidiosa M12, complet... 34 1.4
(Q12238) RecName: Full=UV-induced protein uvi31; &CU329671_754(... 34 1.4
CP000284_244(CP000284|pid:none) Methylobacillus flagellatus KT, ... 34 1.8
CP001612_264(CP001612|pid:none) Rickettsia africae ESF-5, comple... 34 1.8
CP000510_722(CP000510|pid:none) Psychromonas ingrahamii 37, comp... 34 1.8
CP000961_3585(CP000961|pid:none) Shewanella woodyi ATCC 51908, c... 34 1.8
CP001408_2381(CP001408|pid:none) Burkholderia pseudomallei MSHR3... 33 2.4
CP000107_681(CP000107|pid:none) Ehrlichia canis str. Jake, compl... 33 2.4
CP000546_3294(CP000546|pid:none) Burkholderia mallei NCTC 10229 ... 33 2.4
CP000884_3290(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 33 2.4
CP000447_935(CP000447|pid:none) Shewanella frigidimarina NCIMB 4... 33 2.4
AM502239_162(AM502239|pid:none) Leishmania infantum chromosome 21. 33 2.4
CP000356_353(CP000356|pid:none) Sphingopyxis alaskensis RB2256, ... 33 2.4
CP000542_1764(CP000542|pid:none) Verminephrobacter eiseniae EF01... 33 2.4
CP000116_1892(CP000116|pid:none) Thiobacillus denitrificans ATCC... 33 3.1
(Q3T138) RecName: Full=BolA-like protein 1; &BC102140_1(BC10214... 33 3.1
AE008922_2749(AE008922|pid:none) Xanthomonas campestris pv. camp... 33 3.1
CP001191_3557(CP001191|pid:none) Rhizobium leguminosarum bv. tri... 33 3.1
AE008922_2171(AE008922|pid:none) Xanthomonas campestris pv. camp... 33 3.1
CP000613_3011(CP000613|pid:none) Rhodospirillum centenum SW, com... 33 3.1
CP000577_1587(CP000577|pid:none) Rhodobacter sphaeroides ATCC 17... 33 3.1
CP000390_3034(CP000390|pid:none) Mesorhizobium sp. BNC1, complet... 33 3.1
CP000699_2319(CP000699|pid:none) Sphingomonas wittichii RW1, com... 33 3.1
CP000814_253(CP000814|pid:none) Campylobacter jejuni subsp. jeju... 33 3.1
CP000749_2203(CP000749|pid:none) Marinomonas sp. MWYL1, complete... 33 3.1
AE008692_1874(AE008692|pid:none) Zymomonas mobilis subsp. mobili... 33 3.1
AE013598_1270(AE013598|pid:none) Xanthomonas oryzae pv. oryzae K... 33 3.1
CP000025_318(CP000025|pid:none) Campylobacter jejuni RM1221, com... 33 3.1
AP008229_1189(AP008229|pid:none) Xanthomonas oryzae pv. oryzae M... 33 3.1
(Q9PIL7) RecName: Full=Carbamoyl-phosphate synthase large chain;... 33 3.1
CP001600_1026(CP001600|pid:none) Edwardsiella ictaluri 93-146, c... 33 3.1
CP000087_965(CP000087|pid:none) Rickettsia bellii RML369-C, comp... 33 4.0
CP000453_712(CP000453|pid:none) Alkalilimnicola ehrlichii MLHE-1... 33 4.0
CP000440_1891(CP000440|pid:none) Burkholderia ambifaria AMMD chr... 33 4.0
CP000777_1811(CP000777|pid:none) Leptospira biflexa serovar Pato... 33 4.0
CU234118_574(CU234118|pid:none) Bradyrhizobium sp. ORS278,comple... 33 4.0
CP000628_3187(CP000628|pid:none) Agrobacterium radiobacter K84 c... 33 4.0
CP000494_7112(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 33 4.0
CP000151_2023(CP000151|pid:none) Burkholderia sp. 383 chromosome... 33 4.0
CP000926_1339(CP000926|pid:none) Pseudomonas putida GB-1, comple... 33 4.0
AX969343_1(AX969343|pid:none) Sequence 146 from Patent EP1104808. 32 5.3
CP000781_1861(CP000781|pid:none) Xanthobacter autotrophicus Py2,... 32 5.3
(Q5RCE5) RecName: Full=BolA-like protein 1; &CR858326_1(CR85832... 32 5.3
AM398681_1254(AM398681|pid:none) Flavobacterium psychrophilum JI... 32 5.3
AY123135_1(AY123135|pid:none) Griffithsia japonica BolA mRNA, co... 32 5.3
BA000012_2750(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 32 5.3
(Q9Y3E2) RecName: Full=BolA-like protein 1; &AF151901_1(AF15190... 32 5.3
CT005260_222(CT005260|pid:none) Leishmania major strain Friedlin... 32 6.9
CP000633_2967(CP000633|pid:none) Agrobacterium vitis S4 chromoso... 32 6.9
AE016828_786(AE016828|pid:none) Coxiella burnetii RSA 493, compl... 32 6.9
BA000045_691(BA000045|pid:none) Gloeobacter violaceus PCC 7421 D... 32 6.9
AE017321_490(AE017321|pid:none) Wolbachia endosymbiont strain TR... 32 6.9
CP000512_1001(CP000512|pid:none) Acidovorax citrulli AAC00-1, co... 32 9.0
(Q9A4D6) RecName: Full=Carbamoyl-phosphate synthase large chain;... 32 9.0
(P29943) Uncharacterized protein in cobS 5'region (ORF1). &A302... 32 9.0
(A5ESQ5) RecName: Full=tRNA pseudouridine synthase A; E... 32 9.0
CP001147_1205(CP001147|pid:none) Thermodesulfovibrio yellowstoni... 32 9.0
AE016827_311(AE016827|pid:none) Mannheimia succiniciproducens MB... 32 9.0
CT573326_1348(CT573326|pid:none) Pseudomonas entomophila str. L4... 32 9.0

>AM494961_212(AM494961|pid:none) Leishmania braziliensis chromosome
24.
Length = 94

Score = 75.9 bits (185), Expect = 4e-13
Identities = 36/63 (57%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Frame = +3

Query: 135 ALKP-STLNVIDMSGGCGSMYKIEIVSPEFKGKSMINQHRKVNQILKSVIPSLHGLTLVT 311
ALKP +++V+D S GCGS + I+IVSP F+GKS+I+QHR VN +LK I ++HG TL T
Sbjct: 26 ALKPIQSISVVDASAGCGSFFNIDIVSPAFQGKSLIDQHRLVNGVLKEEISAIHGFTLNT 85

Query: 312 KSD 320
KS+
Sbjct: 86 KSE 88

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 556,940,389
Number of extensions: 9549378
Number of successful extensions: 24763
Number of sequences better than 10.0: 263
Number of HSP's gapped: 24627
Number of HSP's successfully gapped: 263
Length of query: 152
Length of database: 1,040,966,779
Length adjustment: 114
Effective length of query: 38
Effective length of database: 675,678,289
Effective search space: 25675774982
Effective search space used: 25675774982
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)

PSORT

psg: 0.63 gvh: 0.40 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.52 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

72.0 %: mitochondrial
20.0 %: cytoplasmic
8.0 %: nuclear

>> prediction for Contig-U06768-1 is mit

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0