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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U06764-1
Contig ID Contig-U06764-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U06764-1 (Contig-U06764-1Q) /CSM_Contig/Contig-U06764-1Q.Seq.d
ATCTCATCACCACCATTACCATCATTACCATAATCATCATAAAGTTGAAA
ACTTAATAGACTCTCATATTTTTATTGGTTTAATGGCTTTTTTAATACTT
TTTATTTTAATGGTAATTGGTTTATTAATTTATAAATATAATTTAAAGAA
AAGAGTTTTAATATTATTAGAGAAACGCTATCAAAGAAAAAAAAAAGTGA
AAACATCACAATTTGGTGATGATTTTACAAGTGCTAAATTTTCTCAAGTT
TTCCCTAAAAATTTAAATATAAATCAAAAAAATAAAGATGATGGTGATGA
TAGCAGTGGTGCTGATGATTTATCAGTTGGTGGAGAATCATTTGATGGTG
AATCAGACTTTGAACATTTTAAAGAAGTTCAAGTGGTTGGNGATATTGAT
AATGTTTTTTTTTTTAAAAATAATAAT
Gap no gap
Contig length 427
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 3463106
End point 3462678
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 2
Link to clone list U06764
List of clone(s) 

est1=VSH122F,1,375
est2=VSG110F,175,428
Translated Amino Acid sequence 
SHHHHYHHYHNHHKVENLIDSHIFIGLMAFLILFILMVIGLLIYKYNLKKRVLILLEKRY
QRKKKVKTSQFGDDFTSAKFSQVFPKNLNINQKNKDDGDDSSGADDLSVGGESFDGESDF
EHFKEVQVVGDIDNVFFFKNNN
Translated Amino Acid sequence (All Frames) 
Frame A:
isspplpslp*ss*s*klnrlsyfywfngffntfyfngnwfinl*i*fkeksfniiretl
skkkksenitiw**fykc*ifssfp*kfkykskk*r*w***qwc**fiswwrii*w*irl
*tf*rsssgwxy**cfff*k**


Frame B:
SHHHHYHHYHNHHKVENLIDSHIFIGLMAFLILFILMVIGLLIYKYNLKKRVLILLEKRY
QRKKKVKTSQFGDDFTSAKFSQVFPKNLNINQKNKDDGDDSSGADDLSVGGESFDGESDF
EHFKEVQVVGDIDNVFFFKNNN


Frame C:
littitiitiiiiklkt**tlifllv*wlf*yflf*w*lvy*finii*rkef*yy*rnai
kekkk*khhnlvmilqvlnflkfslki*i*ikkikmmvmiavvlmiyqlvenhlmvnqtl
nilkkfkwlxilimffflkii
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06764-1 (Contig-U06764-1Q)
/CSM_Contig/Contig-U06764-1Q.Seq.d
         (427 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06764-1 (Contig-U06764-1Q) /CSM_Contig/Conti...   236  2e-62
Contig-U12435-1 (Contig-U12435-1Q) /CSM_Contig/Conti...    38  0.007
Contig-U09608-1 (Contig-U09608-1Q) /CSM_Contig/Conti...    38  0.007
Contig-U12146-1 (Contig-U12146-1Q) /CSM_Contig/Conti...    36  0.029
Contig-U11869-1 (Contig-U11869-1Q) /CSM_Contig/Conti...    36  0.029
Contig-U11388-1 (Contig-U11388-1Q) /CSM_Contig/Conti...    36  0.029
Contig-U10875-1 (Contig-U10875-1Q) /CSM_Contig/Conti...    36  0.029
Contig-U14509-1 (Contig-U14509-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U12036-1 (Contig-U12036-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U11241-1 (Contig-U11241-1Q) /CSM_Contig/Conti...    34  0.12

>Contig-U06764-1 (Contig-U06764-1Q) /CSM_Contig/Contig-U06764-1Q.Seq.d
          Length = 427

 Score =  236 bits (119), Expect = 2e-62
 Identities = 122/122 (100%)
 Strand = Plus / Plus

                                                                       
Query: 283 taaagatgatggtgatgatagcagtggtgctgatgatttatcagttggtggagaatcatt 342
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 taaagatgatggtgatgatagcagtggtgctgatgatttatcagttggtggagaatcatt 342

                                                                       
Query: 343 tgatggtgaatcagactttgaacattttaaagaagttcaagtggttggngatattgataa 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tgatggtgaatcagactttgaacattttaaagaagttcaagtggttggngatattgataa 402

             
Query: 403 tg 404
           ||
Sbjct: 403 tg 404


 Score =  194 bits (98), Expect = 5e-50
 Identities = 118/128 (92%)
 Strand = Plus / Plus

                                                                       
Query: 128 atttataaatataatttaaagaaaagagttttaatattattagagaaacgctatcaaagn 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 128 atttataaatataatttaaagaaaagagttttaatattattagagaaacgctatcaaaga 187

                                                                       
Query: 188 nnnnnnnnngtgaaaacatcacaatttggtgatgattttacaagtgctaaattttctcaa 247
                    |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 aaaaaaaaagtgaaaacatcacaatttggtgatgattttacaagtgctaaattttctcaa 247

                   
Query: 248 gttttccc 255
           ||||||||
Sbjct: 248 gttttccc 255


 Score =  129 bits (65), Expect = 3e-30
 Identities = 65/65 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  atctcatcaccaccattaccatcattaccataatcatcataaagttgaaaacttaataga 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  atctcatcaccaccattaccatcattaccataatcatcataaagttgaaaacttaataga 60

               
Query: 61 ctctc 65
          |||||
Sbjct: 61 ctctc 65


>Contig-U12435-1 (Contig-U12435-1Q) /CSM_Contig/Contig-U12435-1Q.Seq.d
          Length = 1808

 Score = 38.2 bits (19), Expect = 0.007
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 9    accaccattaccatcattaccat 31
            ||||||||||||| |||||||||
Sbjct: 1619 accaccattaccaccattaccat 1597


 Score = 36.2 bits (18), Expect = 0.029
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 9    accaccattaccatcattacca 30
            ||||||||||||| ||||||||
Sbjct: 1628 accaccattaccaccattacca 1607


 Score = 32.2 bits (16), Expect = 0.46
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                
Query: 12   accattaccatcattaccat 31
            ||||||||||| ||||||||
Sbjct: 1601 accattaccattattaccat 1582


>Contig-U09608-1 (Contig-U09608-1Q) /CSM_Contig/Contig-U09608-1Q.Seq.d
          Length = 1109

 Score = 38.2 bits (19), Expect = 0.007
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 145 aaagaaaagagttttaata 163
           |||||||||||||||||||
Sbjct: 165 aaagaaaagagttttaata 183


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9206
Number of Sequences: 6905
Number of extensions: 9206
Number of successful extensions: 1101
Number of sequences better than 10.0: 407
length of query: 427
length of database: 5,674,871
effective HSP length: 16
effective length of query: 411
effective length of database: 5,564,391
effective search space: 2286964701
effective search space used: 2286964701
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11. 9
Homology vs DNA 
Query= Contig-U06764-1 (Contig-U06764-1Q) /CSM_Contig/Contig-U06764-1Q.Seq.d
         (427 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU266940) Dictyostelium discoideum vegetative cDNA clone:VS...   165   e-105  4
(AU265979) Dictyostelium discoideum vegetative cDNA clone:VS...   228   1e-84  2
(AC132758) Rattus norvegicus clone CH230-101A12, *** SEQUENC...    58   3e-04  1
(AC116206) Rattus norvegicus clone CH230-101O4, WORKING DRAF...    58   3e-04  1
(AC116072) Rattus norvegicus clone CH230-249G11, *** SEQUENC...    58   3e-04  1
(AC108277) Rattus norvegicus clone CH230-27E16, *** SEQUENCI...    58   3e-04  1
(AL773579) Human DNA sequence *** SEQUENCING IN PROGRESS ***...    44   8e-04  2
(AL392083) Human DNA sequence from clone RP11-29A19 on chrom...    44   8e-04  2
(AC188263) Callicebus moloch clone LB5-4B18, WORKING DRAFT S...    56   0.001  1
(AP004550) Homo sapiens genomic DNA, chromosome 11q, clone:C...    40   0.003  2
(AC153186) Bos taurus clone CH240-29D19, WORKING DRAFT SEQUE...    54   0.004  1
(AC178813) Strongylocentrotus purpuratus clone R3-22I08, WOR...    36   0.011  2
(AC200926) Strongylocentrotus purpuratus clone R3-1018L04, W...    36   0.011  2
(AC168494) Strongylocentrotus purpuratus clone R3-3117G18, W...    38   0.011  2
(DD369596) COMPOSITIONS, ORGANISMS AND METHODOLOGIES EMPLOYI...    52   0.016  1
(AC222980) Bos taurus clone CH240-432M17, WORKING DRAFT SEQU...    52   0.016  1
(AC182153) Bos taurus clone CH240-514J12, WORKING DRAFT SEQU...    52   0.016  1
(AC207294) Macaca mulatta chromosome UNKNOWN clone CH250-513...    50   0.019  2
(AC010536) Homo sapiens chromosome 16 clone RP11-278A23, com...    38   0.040  2
(CR925829) C.jacchus DNA sequence from clone CH259-147B13.         40   0.040  2
(AC175909) Strongylocentrotus purpuratus clone R3-14B20, WOR...    36   0.040  2
(AC092720) Homo sapiens chromosome 16 clone RP11-482M8, comp...    38   0.041  2
(AF429315) Homo sapiens junctophilin 3 (JPH3) gene, partial ...    42   0.041  2
(AC177748) Strongylocentrotus purpuratus clone R3-1008C10, W...    48   0.056  2
(BV583098) G591P625753FD2.T0 Clint Pan troglodytes verus STS...    50   0.064  1
(BV075061) S212P6048FD6.T0 CZECHII/Ei Mus musculus STS genom...    50   0.064  1
(AL603868) Mouse DNA sequence from clone RP23-101J23 on chro...    50   0.064  1
(AC122888) Mus musculus BAC clone RP23-93F11 from chromosome...    50   0.064  1
(AC102124) Mus musculus chromosome 18, clone RP23-188D1, com...    50   0.064  1
(AC073094) Homo sapiens BAC clone RP11-369D24 from 7, comple...    50   0.064  1
(AC120965) Rattus norvegicus clone CH230-62G7, *** SEQUENCIN...    50   0.064  1
(AC112753) Rattus norvegicus clone CH230-22O15, *** SEQUENCI...    50   0.064  1
(AC111575) Rattus norvegicus clone CH230-68E4, WORKING DRAFT...    50   0.064  1
(AC106289) Rattus norvegicus clone CH230-70G1, *** SEQUENCIN...    50   0.064  1
(AC098981) Rattus norvegicus clone CH230-112J19, *** SEQUENC...    50   0.064  1
(AC205774) Pongo abelii chromosome UNKNOWN clone CH276-207I1...    50   0.064  1
(AC201590) Strongylocentrotus purpuratus clone R3-4019L21, W...    50   0.064  1
(AC184495) Strongylocentrotus purpuratus clone R3-13H9, WORK...    50   0.064  1
(AC181324) Strongylocentrotus purpuratus clone R3-4017O23, W...    50   0.064  1
(AC179327) Strongylocentrotus purpuratus clone R3-57F4, WORK...    50   0.064  1
(AC174244) Strongylocentrotus purpuratus clone R3-12J3, WORK...    50   0.064  1
(AK033312) Mus musculus 15 days embryo male testis cDNA, RIK...    50   0.064  1
(AZ145694) SP_0025_A1_B10_T7 Strongylocentrotus purpuratus, ...    50   0.064  1
(EI182701) MUGQ_CH252P190F12Sp6_CN287_044 CHORI-252 Vervet M...    50   0.064  1
(BZ136796) CH230-288M23.TV CHORI-230 Segment 2 Rattus norveg...    50   0.064  1
(BZ135134) CH230-287N23.TV CHORI-230 Segment 2 Rattus norveg...    50   0.064  1
(BB624477) Mus musculus 15 days embryo male testis cDNA, RIK...    50   0.064  1
(FD700200) CAAA10125.fwd CAAA Petromyzon marinus Petromyzon ...    50   0.064  1
(AC201543) Strongylocentrotus purpuratus clone R3-3102L21, W...    38   0.13   3
(AC181202) Strongylocentrotus purpuratus clone R3-3040K6, WO...    42   0.19   2
(AC198905) Pan troglodytes BAC clone CH251-428E24 from chrom...    48   0.25   1
(AC190317) Rhesus Macaque  BAC CH250-340A9 () complete seque...    48   0.25   1
(AC163768) Pan troglodytes BAC clone CH251-59N11 from chromo...    48   0.25   1
(AC158539) Pan troglodytes BAC clone CH251-510O3 from chromo...    48   0.25   1
(AL583807) Human DNA sequence from clone RP11-105C7 on chrom...    48   0.25   1
(AL390254) Human chromosome 14 DNA sequence BAC R-991C1 of l...    48   0.25   1
(AC207611) Homo sapiens FOSMID clone ABC10-1622570O17 from c...    48   0.25   1
(AC136285) Homo sapiens chromosome 16 clone RP11-899L11, com...    48   0.25   1
(AC131859) Rattus norvegicus clone CH230-198G14, WORKING DRA...    48   0.25   1
(AC128389) Rattus norvegicus clone CH230-137B13, WORKING DRA...    48   0.25   1
(AC121027) Rattus norvegicus clone CH230-430P23, *** SEQUENC...    48   0.25   1
(AC120623) Rattus norvegicus clone CH230-86N16, WORKING DRAF...    48   0.25   1
(AC118131) Rattus norvegicus clone CH230-198O7, WORKING DRAF...    48   0.25   1
(AC110488) Rattus norvegicus clone CH230-170J23, WORKING DRA...    48   0.25   1
(AC110144) Rattus norvegicus clone CH230-324K24, WORKING DRA...    48   0.25   1
(AC107438) Rattus norvegicus clone CH230-160A14, *** SEQUENC...    48   0.25   1
(AC106664) Rattus norvegicus clone CH230-103O6, *** SEQUENCI...    48   0.25   1
(AC106236) Rattus norvegicus clone CH230-131J10, WORKING DRA...    48   0.25   1
(AC103025) Rattus norvegicus clone CH230-199J12, WORKING DRA...    48   0.25   1
(AC096986) Rattus norvegicus clone CH230-30K12, *** SEQUENCI...    48   0.25   1
(CU655937) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.25   1
(AC094328) Rattus norvegicus clone CH230-3I24, *** SEQUENCIN...    48   0.25   1
(AC230275) Bos taurus clone CH240-514L4, WORKING DRAFT SEQUE...    48   0.25   1
(AC186181) Pan troglodytes chromosome UNKNOWN clone CH251-40...    48   0.25   1
(AC181223) Strongylocentrotus purpuratus clone R3-4009M09, W...    48   0.25   1
(AC178805) Strongylocentrotus purpuratus clone R3-22G01, WOR...    48   0.25   1
(AC178363) Strongylocentrotus purpuratus clone R3-3107B10, W...    48   0.25   1
(AC177261) Strongylocentrotus purpuratus clone R3-43K19, WOR...    48   0.25   1
(BH270896) CH230-67G15.TJ CHORI-230 Segment 1 Rattus norvegi...    48   0.25   1
(FG607116) stem_S019_A03.SEQ Opium poppy stem cDNA library P...    48   0.25   1
(FC842747) CBHN2175.fwd CBHN Metridium senile tentacle Metri...    42   0.27   2
(AC055717) Homo sapiens 12 BAC RP11-572C21 (Roswell Park Can...    44   0.31   2
(FC842746) CBHN2175.rev CBHN Metridium senile tentacle Metri...    42   0.34   2
(CQ267237) Sequence 15498 from Patent WO0157277.                   36   0.36   2
(CQ205697) Sequence 7974 from Patent WO0157271.                    36   0.36   2
(CQ181358) Sequence 12754 from Patent WO0157274.                   36   0.36   2
(CQ107236) Sequence 16095 from Patent WO0157272.                   36   0.36   2
(CQ076247) Sequence 12047 from Patent WO0157278.                   36   0.36   2
(CQ056983) Sequence 7803 from Patent WO0157270.                    36   0.36   2
(AC127602) Rattus norvegicus clone CH230-20M3, *** SEQUENCIN...    44   0.38   3
(AC101601) Mus musculus clone RP23-198D17, LOW-PASS SEQUENCE...    46   0.44   2
(AC181189) Strongylocentrotus purpuratus clone R3-13L17, WOR...    42   0.46   3
(AC215987) Homo sapiens chromosome UNK clone ABC13-47488300P...    40   0.50   3
(AC180427) Strongylocentrotus purpuratus clone R3-3103H10, W...    36   0.55   2
(AC201116) Strongylocentrotus purpuratus clone R3-13N1, WORK...    36   0.55   2
(AC179460) Strongylocentrotus purpuratus clone R3-63G3, WORK...    36   0.55   2
(AC201298) Strongylocentrotus purpuratus clone R3-16H4, WORK...    36   0.56   2
(AC179177) Strongylocentrotus purpuratus clone R3-1107H1, WO...    32   0.57   2
(AL589864) Human DNA sequence from clone RP13-63P20 on chrom...    34   0.57   2
(AC125793) Homo sapiens chromosome 16 clone CTD-3253I12, com...    40   0.69   2

>(AU266940) Dictyostelium discoideum vegetative cDNA clone:VSH122,
           5' end single read.
          Length = 375

 Score =  165 bits (83), Expect(4) = e-105
 Identities = 87/89 (97%)
 Strand = Plus / Plus


Query: 287 gatgatggtgatgatagcagtggtgctgatgatttatcagttggtggagaatcatttgat 346
           |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 287 gatgatggtgatgatagcagnggtgctgatgatttatcagttggnggagaatcatttgat 346


Query: 347 ggtgaatcagactttgaacattttaaaga 375
           |||||||||||||||||||||||||||||
Sbjct: 347 ggtgaatcagactttgaacattttaaaga 375

 Score =  131 bits (66), Expect(4) = e-105
 Identities = 66/66 (100%)
 Strand = Plus / Plus


Query: 1  atctcatcaccaccattaccatcattaccataatcatcataaagttgaaaacttaataga 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  atctcatcaccaccattaccatcattaccataatcatcataaagttgaaaacttaataga 60


Query: 61 ctctca 66
          ||||||
Sbjct: 61 ctctca 66

 Score =  117 bits (59), Expect(4) = e-105
 Identities = 59/59 (100%)
 Strand = Plus / Plus


Query: 197 gtgaaaacatcacaatttggtgatgattttacaagtgctaaattttctcaagttttccc 255
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gtgaaaacatcacaatttggtgatgattttacaagtgctaaattttctcaagttttccc 255

 Score = 46.1 bits (23), Expect(4) = e-105
 Identities = 23/23 (100%)
 Strand = Plus / Plus


Query: 164 ttattagagaaacgctatcaaag 186
           |||||||||||||||||||||||
Sbjct: 164 ttattagagaaacgctatcaaag 186

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 316,122,246
Number of extensions: 21904062
Number of successful extensions: 1559824
Number of sequences better than 10.0: 334
Length of query: 427
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 404
Effective length of database: 93,106,754,628
Effective search space: 37615128869712
Effective search space used: 37615128869712
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 6.22
Homology vs Protein 
Query= Contig-U06764-1 (Contig-U06764-1Q) /CSM_Contig/Contig-U06764-1Q.Seq.d
         (427 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54MY4) RecName: Full=Uncharacterized transmembrane protein DDB...   219   2e-56
CR378669_158(CR378669|pid:none) Photobacterium profundum SS9; se...    33   2.4
(Q2FXK8) RecName: Full=Septation ring formation regulator ezrA; ...    32   5.3
AX597028_1(AX597028|pid:none) Sequence 3 from Patent EP1258495.        32   6.9
CR382127_37(CR382127|pid:none) Yarrowia lipolytica strain CLIB12...    32   6.9
(Q8IWT1) RecName: Full=Sodium channel subunit beta-4; Flags: Pre...    32   6.9

>(Q54MY4) RecName: Full=Uncharacterized transmembrane protein
           DDB_G0285607;
          Length = 361

 Score =  219 bits (559), Expect = 2e-56
 Identities = 113/129 (87%), Positives = 113/129 (87%)
 Frame = +2

Query: 41  KVENLIDSHIFIGLMAFLILFILMVIGLLIYKYNLKKRVLILLEKRYQRKKKVKTSQFGD 220
           KVENLIDSHIFIGLMAFLILFILMVIGLLIYKYNLKKRVLILLEKRYQRKKKVKTSQFGD
Sbjct: 216 KVENLIDSHIFIGLMAFLILFILMVIGLLIYKYNLKKRVLILLEKRYQRKKKVKTSQFGD 275

Query: 221 DFTSAKFSQVFPKNLNINQKNKXXXXXXXXXXXXXXXXESFDGESDFEHFKEVQVVGDID 400
           DFTSAKFSQVFPKNLNINQKNK                ESFDGESDFEHFKEVQVVGDID
Sbjct: 276 DFTSAKFSQVFPKNLNINQKNKDDGDDSSGADDLSVGGESFDGESDFEHFKEVQVVGDID 335

Query: 401 NVFFFKNNN 427
           NVFFFKNNN
Sbjct: 336 NVFFFKNNN 344

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 294,684,574
Number of extensions: 3647041
Number of successful extensions: 14574
Number of sequences better than 10.0: 6
Number of HSP's gapped: 14554
Number of HSP's successfully gapped: 6
Length of query: 142
Length of database: 1,040,966,779
Length adjustment: 105
Effective length of query: 37
Effective length of database: 704,516,854
Effective search space: 26067123598
Effective search space used: 26067123598
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)
PSORT 

 psg: 0.57  gvh: 0.58  alm: 0.09  top: 0.77  tms: 0.07  mit: 0.25  mip: 0.00
 nuc: 0.21  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.09  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for Contig-U06764-1 is cyt
VS (DIR, S) 2
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0