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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U06741-1
Contig ID Contig-U06741-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U06741-1 (Contig-U06741-1Q) /CSM_Contig/Contig-U06741-1Q.Seq.d
ATACTAGAAAACGTATAGTAGATGATCAAATTCTAATAAAATCAACAGAA
ATTAAAAGTTACATTTTAAAATGTGGATGCAACCCCTGCAACAAAGGAAA
ACGATAATGAAATTAGTATTAATAGAGACGTAAAAGAGAATATAGGTCCA
ATAAAATTATTTAAAGAAACAAATCTTACAAATTGTAATAATAATAATAA
TAATATTACTACTCTACAACCTAATATTGAAATTATATCAAGTTACAATG
AAAATGAAGAAACATACGAAGAAGAAACAAATAAAAAAAGAAAATTAAAT
TTTGAAAATTGTTCAACATATTCCACACAATTTACTTTAGGTTCAAAAAA
AGTTTTAGTTATTTCAACTACTAAAGAAAATATAAATAATTTAGATAATA
AAGAGTCTATTGTAGAAAATTCATTTTTTATTTTTGATAGTTGCCAAATA
GAAAATAATGAAATAAATAACTATAAAGAAATAATATTATCAAAAGTTAG
CCAAGACCCAATGGTTTATTAAATATTTAAACATGTATAAATAAAATAAA
TAATTTAAAAATTTTTAATTA
Gap no gap
Contig length 571
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 1697339
End point 1697910
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 2
Link to clone list U06741
List of clone(s) 

est1=VSF714F,1,572
est2=VSF714Z,1,560
Translated Amino Acid sequence 
ilenv**mikf**nqqklkvtf*NVDATPATKENDNEISINRDVKENIGPIKLFKETNLT
NCNNNNNNITTLQPNIEIISSYNENEETYEEETNKKRKLNFENCSTYSTQFTLGSKKVLV
ISTTKENINNLDNKESIVENSFFIFDSCQIENNEINNYKEIILSKVSQDPMVY*ifkhv*
ik*ii*kfli
Translated Amino Acid sequence (All Frames) 
Frame A:
ilenv**mikf**nqqklkvtf*NVDATPATKENDNEISINRDVKENIGPIKLFKETNLT
NCNNNNNNITTLQPNIEIISSYNENEETYEEETNKKRKLNFENCSTYSTQFTLGSKKVLV
ISTTKENINNLDNKESIVENSFFIFDSCQIENNEINNYKEIILSKVSQDPMVY*ifkhv*
ik*ii*kfli


Frame B:
y*ktysr*snsnkinrn*klhfkmwmqplqqrktimklvliet*kri*vq*nylkkqilq
iviiiiiilllynlilklyqvtmkmkkhtkkkqikken*ilkivqhiphnll*vqkkf*l
fqllkki*ii*iiksll*kihflflivak*kimk*itikk*yyqklaktqwfikylnmyk
*nk*fknf*l


Frame C:
trkrivddqiliksteiksyilkcgcnpcnkgkr**n*y**rrkreyrsnkii*rnksyk
l******yyystt*y*nyiklq*k*rnirrrnk*kkkikf*klfnifhtiyfrfkksfsy
fny*rkyk*fr**rvycrkfifyf**lpnrk**nk*l*rnniiks*prpngllni*tcin
kinnlkifn
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06741-1 (Contig-U06741-1Q)
/CSM_Contig/Contig-U06741-1Q.Seq.d
         (571 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06741-1 (Contig-U06741-1Q) /CSM_Contig/Conti...   456  e-128
Contig-U12897-1 (Contig-U12897-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U14561-1 (Contig-U14561-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U11530-1 (Contig-U11530-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U13983-1 (Contig-U13983-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U13918-1 (Contig-U13918-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U12428-1 (Contig-U12428-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U12269-1 (Contig-U12269-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U13779-1 (Contig-U13779-1Q) /CSM_Contig/Conti...    30  2.5

>Contig-U06741-1 (Contig-U06741-1Q) /CSM_Contig/Contig-U06741-1Q.Seq.d
          Length = 571

 Score =  456 bits (230), Expect = e-128
 Identities = 282/308 (91%)
 Strand = Plus / Plus

                                                                       
Query: 206 ttactactctacaacctaatattgaaattatatcaagttacaatgaaaatgaagaaacat 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ttactactctacaacctaatattgaaattatatcaagttacaatgaaaatgaagaaacat 265

                                                                       
Query: 266 acgaagaagaaacaaatnnnnnnngaaaattaaattttgaaaattgttcaacatattcca 325
           |||||||||||||||||       ||||||||||||||||||||||||||||||||||||
Sbjct: 266 acgaagaagaaacaaataaaaaaagaaaattaaattttgaaaattgttcaacatattcca 325

                                                                       
Query: 326 cacaatttactttaggttcnnnnnnngttttagttatttcaactactaaagaaaatataa 385
           |||||||||||||||||||       ||||||||||||||||||||||||||||||||||
Sbjct: 326 cacaatttactttaggttcaaaaaaagttttagttatttcaactactaaagaaaatataa 385

                                                                       
Query: 386 ataatttagataataaagagtctattgtagaaaattcannnnnnnnnnnngatagttgcc 445
           ||||||||||||||||||||||||||||||||||||||            ||||||||||
Sbjct: 386 ataatttagataataaagagtctattgtagaaaattcattttttatttttgatagttgcc 445

                                                                       
Query: 446 aaatagaaaataatgaaataaataactataaagaaataatattatcaaaagttagccaag 505
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aaatagaaaataatgaaataaataactataaagaaataatattatcaaaagttagccaag 505

                   
Query: 506 acccaatg 513
           ||||||||
Sbjct: 506 acccaatg 513


 Score =  367 bits (185), Expect = e-102
 Identities = 185/185 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atactagaaaacgtatagtagatgatcaaattctaataaaatcaacagaaattaaaagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atactagaaaacgtatagtagatgatcaaattctaataaaatcaacagaaattaaaagtt 60

                                                                       
Query: 61  acattttaaaatgtggatgcaacccctgcaacaaaggaaaacgataatgaaattagtatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  acattttaaaatgtggatgcaacccctgcaacaaaggaaaacgataatgaaattagtatt 120

                                                                       
Query: 121 aatagagacgtaaaagagaatataggtccaataaaattatttaaagaaacaaatcttaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aatagagacgtaaaagagaatataggtccaataaaattatttaaagaaacaaatcttaca 180

                
Query: 181 aattg 185
           |||||
Sbjct: 181 aattg 185


 Score = 28.2 bits (14), Expect = 9.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                        
Query: 61 acattttaaaatgt 74
          ||||||||||||||
Sbjct: 74 acattttaaaatgt 61


>Contig-U12897-1 (Contig-U12897-1Q) /CSM_Contig/Contig-U12897-1Q.Seq.d
          Length = 1279

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 378 aaatataaataatttagataataa 401
           ||||||||||||| ||||||||||
Sbjct: 214 aaatataaataatatagataataa 237


 Score = 32.2 bits (16), Expect = 0.62
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                            
Query: 389  atttagataataaaga 404
            ||||||||||||||||
Sbjct: 1243 atttagataataaaga 1228


 Score = 30.2 bits (15), Expect = 2.5
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                              
Query: 452 aaaataatgaaataaataa 470
           ||||||||||||| |||||
Sbjct: 191 aaaataatgaaatcaataa 209


>Contig-U14561-1 (Contig-U14561-1Q) /CSM_Contig/Contig-U14561-1Q.Seq.d
          Length = 688

 Score = 38.2 bits (19), Expect = 0.010
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 295 ttaaattttgaaaattgtt 313
           |||||||||||||||||||
Sbjct: 134 ttaaattttgaaaattgtt 152


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,949
Number of Sequences: 6905
Number of extensions: 10949
Number of successful extensions: 1417
Number of sequences better than 10.0: 467
length of query: 571
length of database: 5,674,871
effective HSP length: 16
effective length of query: 555
effective length of database: 5,564,391
effective search space: 3088237005
effective search space used: 3088237005
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11. 9
Homology vs DNA 
Query= Contig-U06741-1 (Contig-U06741-1Q) /CSM_Contig/Contig-U06741-1Q.Seq.d
         (571 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU265665) Dictyostelium discoideum vegetative cDNA clone:VS...   190   e-170  6
(AU265666) Dictyostelium discoideum vegetative cDNA clone:VS...   329   e-164  5
(EK163239) 1095458040592 Global-Ocean-Sampling_GS-31-01-01-1...    40   0.001  2
(ER305382) 1092343746062 Global-Ocean-Sampling_GS-34-01-01-1...    50   0.087  1
(EK207524) 1095460081536 Global-Ocean-Sampling_GS-31-01-01-1...    50   0.087  1
(DU334970) 1098312091293 CHORI-243 Ovis aries genomic clone ...    34   0.12   3
(DU262419) 1098574250248 CHORI-243 Ovis aries genomic clone ...    34   0.16   3
(CR954285) Zebrafish DNA sequence from clone DKEYP-87C8 in l...    40   0.21   2
(FC470453) CAXH5428.rev CAXH Mnemiopsis leidyi whole animal ...    38   0.26   2
(AC132137) Mus musculus BAC clone RP23-153E2 from 3, complet...    48   0.35   1
(CQ870385) Sequence 806 from Patent WO2004074320.                  48   0.35   1
(AC098617) Homo sapiens BAC clone RP11-56I1 from 2, complete...    48   0.35   1
(CF469211) P17F2 Plasmodium yoelli 17X axenic hepatic stages...    48   0.35   1
(BG603660) EST502750 Plasmodium yoelii sporozoite cDNA Plasm...    48   0.35   1
(BG603654) EST502744 Plasmodium yoelii sporozoite cDNA Plasm...    48   0.35   1
(BG603650) EST502740 Plasmodium yoelii sporozoite cDNA Plasm...    48   0.35   1
(AZ536836) Gm_ISb001_041_D06_R ISU Soybean BAC Library (pBel...    36   0.58   2
(AC205202) Muntiacus reevesi clone CH245-91M3, WORKING DRAFT...    46   0.60   2
(EK432395) 1095516164511 Global-Ocean-Sampling_GS-31-01-01-1...    40   0.80   2
(AC016046) Homo sapiens chromosome 19, cosmid F25583, comple...    46   1.2    3
(AC187710) Callithrix jacchus BAC clone CH259-11H12 from chr...    46   1.4    1
(AC211306) Populus trichocarpa clone POP004-K18, complete se...    46   1.4    1
(AC144608) Medicago truncatula clone mth2-23d2, complete seq...    46   1.4    1
(AC141106) Medicago truncatula clone mth2-33e18, complete se...    46   1.4    1
(AC008530) Homo sapiens chromosome 19 clone CTC-478M6, compl...    46   1.4    1
(AC130120) Rattus norvegicus clone CH230-156H24, *** SEQUENC...    46   1.4    1
(AC126623) Rattus norvegicus clone CH230-269I18, WORKING DRA...    46   1.4    1
(AC126099) Rattus norvegicus clone CH230-383N18, *** SEQUENC...    46   1.4    1
(AC189250) Brassica rapa subsp. pekinensis clone KBrB019B16,...    46   1.4    1
(AC181893) Strongylocentrotus purpuratus clone R3-1016E07, W...    46   1.4    1
(AQ453692) HS_5155_A2_B10_SP6E RPCI-11 Human Male BAC Librar...    46   1.4    1
(ER369148) 1093022164633 Global-Ocean-Sampling_GS-34-01-01-1...    46   1.4    1
(EK157303) 1095458010914 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.4    1
(EI352015) GM_WBc0101D11.f GM_WBc Glycine max genomic clone ...    46   1.4    1
(DX068279) KBrB076P07F KBrB, Brassica rapa BamHI BAC library...    46   1.4    1
(DX022671) KBrB016N01F KBrB, Brassica rapa BamHI BAC library...    46   1.4    1
(DU982081) KBrH070A24F KBrH (HindIII) BAC library Brassica r...    46   1.4    1
(CK525789) rswfa0_001788.y1 swf Bombyx mori cDNA, mRNA seque...    46   1.4    1
(EY376682) CAXA16315.rev CAXA Helobdella robusta Subtracted ...    42   2.1    2
(AC221642) Bos taurus clone CH240-389L7, WORKING DRAFT SEQUE...    42   2.6    3
(AJ928340) Theileria annulata EST, clone tam025b06_q1k.            38   3.3    2
(Z73975) Caenorhabditis elegans Cosmid T06E8.                      42   3.3    2
(AC172700) Muntiacus reevesi clone CH245-334G20, WORKING DRA...    38   4.6    4
(DW346727) PP_LEc0010P17f Peach shoot Prunus persica cDNA cl...    34   4.7    2
(AC189409) Brassica rapa subsp. pekinensis clone KBrB059L17,...    42   5.1    2
(AC134912) Mus musculus BAC clone RP23-162E15 from chromosom...    40   5.1    5
(AE017308) Mycoplasma mobile 163K complete genome.                 32   5.3    10
(BX537166) Zebrafish DNA sequence from clone DKEY-218I12 in ...    44   5.4    1
(BX537118) Zebrafish DNA sequence from clone CH211-202N8.          44   5.4    1
(BX511209) Zebrafish DNA sequence from clone CH211-129A6 in ...    44   5.4    1
(BX000437) Zebrafish DNA sequence from clone DKEY-106O5 in l...    44   5.4    1
(AC186856) Gallus gallus BAC clone CH261-3F21 from chromosom...    44   5.4    1
(AC154143) Mus musculus chromosome 15, clone RP24-338F24, co...    44   5.4    1
(AC129204) Mus musculus BAC clone RP24-230P5 from chromosome...    44   5.4    1
(AC125488) Mus musculus BAC clone RP23-75M24 from 12, comple...    44   5.4    1
(AC123640) Mus musculus chromosome 15, clone RP23-11D17, com...    44   5.4    1
(AC198150) Nomascus leucogenys BAC clone CH271-185K6 from ch...    44   5.4    1
(D31785) Pichia canadensis mitochondrial genomic DNA, comple...    44   5.4    1
(AF077407) Arabidopsis thaliana BAC F9D12.                         44   5.4    1
(AC196858) Glycine max clone gmw1-8g7, complete sequence.          44   5.4    1
(AC005965) Arabidopsis thaliana BAC T19G15, from chromosome ...    44   5.4    1
(AE014836) Plasmodium falciparum 3D7 chromosome 11 section 1...    44   5.4    1
(AL139353) Human chromosome 14 DNA sequence BAC R-176H8 of l...    44   5.4    1
(AC226692) Homo sapiens FOSMID clone ABC8-40890500F15 from c...    44   5.4    1
(AC160686) Bos taurus clone CH240-93P11, WORKING DRAFT SEQUE...    44   5.4    1
(AC160006) Bos taurus clone CH240-81A3, WORKING DRAFT SEQUEN...    44   5.4    1
(AC155919) Medicago truncatula chromosome 6 clone mth2-119h1...    44   5.4    1
(AC144344) Medicago truncatula chromosome 6 clone mth2-8c18,...    44   5.4    1
(AC134090) Rattus norvegicus clone CH230-499J9, WORKING DRAF...    44   5.4    1
(AC112835) Rattus norvegicus clone CH230-354O21, *** SEQUENC...    44   5.4    1
(AC098663) Rattus norvegicus clone CH230-106J15, WORKING DRA...    44   5.4    1
(CR932984) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   5.4    1
(AL844507) Plasmodium falciparum chromosome 8.                     44   5.4    1
(AC223848) Bos taurus clone CH240-456F5, WORKING DRAFT SEQUE...    44   5.4    1
(AC202398) Zea mays chromosome 9 clone CH201-235F15; ZMMBBc0...    44   5.4    1
(AC200959) Strongylocentrotus purpuratus clone R3-1111E4, WO...    44   5.4    1
(AC184996) Bos taurus clone CH240-310J8, WORKING DRAFT SEQUE...    44   5.4    1
(AC181395) Strongylocentrotus purpuratus clone R3-4J18, WORK...    44   5.4    1
(AC172806) Bos taurus clone CH240-528E4, WORKING DRAFT SEQUE...    44   5.4    1
(AC166462) Bos taurus clone CH240-26I2, WORKING DRAFT SEQUEN...    44   5.4    1
(ET197086) MUGQ_CH252P395F23Sp6_CP751_092 CHORI-252 Vervet M...    44   5.4    1
(EJ286170) 1095368021867 Global-Ocean-Sampling_GS-27-01-01-1...    44   5.4    1
(EI064861) hhc0008da03.g1 hhc Oryza granulata genomic clone ...    44   5.4    1
(ED615818) GM_WBa0008G04.f GM_WBa Glycine max genomic clone ...    44   5.4    1
(DU902290) 418428 Tomato HindIII BAC Library Solanum lycoper...    44   5.4    1
(CZ955016) 269261 Tomato EcoRI BAC Library Solanum lycopersi...    44   5.4    1
(AG699603) Macaca fuscata fuscata DNA, clone: MSB2-138A09_F,...    44   5.4    1
(EL498877) PFLAB1-M_F3_-P8A_D06_08.AB1 Blood stage Plasmodiu...    44   5.4    1
(EE526357) 37RDBRH_UP_055_B01_05DEC2005_013 Brassica rapa 37...    44   5.4    1
(EB500452) 1099435291590 12-DrosW-norm-1P5Kb Drosophila will...    44   5.4    1
(EB491287) 1099341392571 12-DrosW-norm-1P5Kb Drosophila will...    44   5.4    1
(DY890900) CeleSEQ7378 Cunninghamella elegans pBluescript (E...    44   5.4    1
(DY890508) CeleSEQ9537 Cunninghamella elegans pBluescript (E...    44   5.4    1
(DY887197) CeleSEQ3120 Cunninghamella elegans pBluescript (E...    44   5.4    1
(DY887030) CeleSEQ2897 Cunninghamella elegans pBluescript (E...    44   5.4    1
(DN872553) nad20g04.x1 Dog eye cornea. Unnormalized (nad) Ca...    44   5.4    1
(BU748278) CH3#019_A04T3 Canine heart normalized cDNA Librar...    44   5.4    1
(CP000312) Clostridium perfringens SM101, complete genome.         44   5.4    1
(AC210505) Populus trichocarpa clone POP021-M24, complete se...    42   6.0    2
(AC184061) Populus trichocarpa clone Pop1-106E19, complete s...    36   6.0    4

>(AU265665) Dictyostelium discoideum vegetative cDNA clone:VSF714,
          5' end single read.
          Length = 571

 Score =  190 bits (96), Expect(6) = e-170
 Identities = 96/96 (100%)
 Strand = Plus / Plus


Query: 1  atactagaaaacgtatagtagatgatcaaattctaataaaatcaacagaaattaaaagtt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  atactagaaaacgtatagtagatgatcaaattctaataaaatcaacagaaattaaaagtt 60


Query: 61 acattttaaaatgtggatgcaacccctgcaacaaag 96
          ||||||||||||||||||||||||||||||||||||
Sbjct: 61 acattttaaaatgtggatgcaacccctgcaacaaag 96

 Score =  176 bits (89), Expect(6) = e-170
 Identities = 89/89 (100%)
 Strand = Plus / Plus


Query: 97  gaaaacgataatgaaattagtattaatagagacgtaaaagagaatataggtccaataaaa 156
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  gaaaacgataatgaaattagtattaatagagacgtaaaagagaatataggtccaataaaa 155


Query: 157 ttatttaaagaaacaaatcttacaaattg 185
           |||||||||||||||||||||||||||||
Sbjct: 156 ttatttaaagaaacaaatcttacaaattg 184

 Score =  143 bits (72), Expect(6) = e-170
 Identities = 72/72 (100%)
 Strand = Plus / Plus


Query: 352 gttttagttatttcaactactaaagaaaatataaataatttagataataaagagtctatt 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gttttagttatttcaactactaaagaaaatataaataatttagataataaagagtctatt 410


Query: 412 gtagaaaattca 423
           ||||||||||||
Sbjct: 411 gtagaaaattca 422

 Score = 87.7 bits (44), Expect(6) = e-170
 Identities = 44/44 (100%)
 Strand = Plus / Plus


Query: 206 ttactactctacaacctaatattgaaattatatcaagttacaat 249
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ttactactctacaacctaatattgaaattatatcaagttacaat 248

 Score = 69.9 bits (35), Expect(6) = e-170
 Identities = 35/35 (100%)
 Strand = Plus / Plus


Query: 310 tgttcaacatattccacacaatttactttaggttc 344
           |||||||||||||||||||||||||||||||||||
Sbjct: 309 tgttcaacatattccacacaatttactttaggttc 343

 Score = 56.0 bits (28), Expect(6) = e-170
 Identities = 28/28 (100%)
 Strand = Plus / Plus


Query: 487 ttatcaaaagttagccaagacccaatgg 514
           ||||||||||||||||||||||||||||
Sbjct: 486 ttatcaaaagttagccaagacccaatgg 513

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 490,510,659
Number of extensions: 32933969
Number of successful extensions: 3026332
Number of sequences better than 10.0: 114
Length of query: 571
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 548
Effective length of database: 93,106,754,628
Effective search space: 51022501536144
Effective search space used: 51022501536144
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.22
Homology vs Protein 
Query= Contig-U06741-1 (Contig-U06741-1Q) /CSM_Contig/Contig-U06741-1Q.Seq.d
         (571 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 473,831,132
Number of extensions: 5575954
Number of successful extensions: 16292
Number of sequences better than 10.0: 0
Number of HSP's gapped: 16288
Number of HSP's successfully gapped: 0
Length of query: 190
Length of database: 1,040,966,779
Length adjustment: 121
Effective length of query: 69
Effective length of database: 653,248,294
Effective search space: 45074132286
Effective search space used: 45074132286
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.75  gvh: 0.28  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U06741-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0