NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U06695-1
Contig ID Contig-U06695-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U06695-1 (Contig-U06695-1Q) /CSM_Contig/Contig-U06695-1Q.Seq.d
AAAAAAAAAANGAATTNTAATTAATTNCAANGGATNTAATTATTAATAAT
AATAATGTCATCAATNTTAAAGAGTAGTNCTGGAAGTAACCATAGCAGTN
CTAGTAATCATAGTAGCATAAATAATATAAGTCAGCTAAGNGGATCTCAT
GGTGTAGAACAACCAACAACTTAGACCAGTATTAACATTAGATGCATCAA
CAGCTAAACTAATGTACCAAACTAGTCAAGAAATGTCAAGTTATATACAA
CAAGTTGCAAATGAACCAACAATTGGTTTATTTCATGTTCAAGATCATAT
AAGAAGAAACATACCTAAAAATGTCGAATTAAAAAAAAATATTAAAGCGT
TGGGAGAAAAAATAGAAGAGAAATCATTTGATATTGATTATAGTACAAAA
ACAATAAAAACATTCTCAGAGATTCAAACATTTTCAAATATATCCTCACT
ATTACAACAATCAATTGAAAGAGCAAATAAATTAGTTAATAATAAATCAC
TTTTATTTGTAAACTCTCAAATGGCTGCACCTTCTTCATCTAAAACATTT
TCATCATTTCAACAACAACATAAAATTTATCAACAACAACAAACCAATTT
AACCCCTTCAAAACCGACACTTTCAAACGATAAAACTAACGATAATAATA
ACAATAATAATAACTTAAATTTTGTTGAAAAAATAGAAAAAGAAGAAAAA
ATAGAAAAAGAAGATGAGGGAAAAGAAAAAGAGAAAAAGAAAAAGAGATA
AAGATTTAAANAAAAAATAAATTAATAACCAA
Gap no gap
Contig length 782
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 1146712
End point 1147499
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U06695
List of clone(s) 

est1=VSF326E,1,783
Translated Amino Acid sequence 
kkkxixinxxgxny****chqx*rvvlevtiavlviiva*ii*vs*xdlmv*NNQQLRPV
LTLDASTAKLMYQTSQEMSSYIQQVANEPTIGLFHVQDHIRRNIPKNVELKKNIKALGEK
IEEKSFDIDYSTKTIKTFSEIQTFSNISSLLQQSIERANKLVNNKSLLFVNSQMAAPSSS
KTFSSFQQQHKIYQQQQTNLTPSKPTLSNDKTNDNNNNNNNLNFVEKIEKEEKIEKEDEG
KEKEKKKKR*rfkxkin**p
Translated Amino Acid sequence (All Frames) 
Frame A:
kkkxnxn*xqxx*lliiimssxlkssxgsnhssxsnhssinnisqlxgshgveqptt*ts
inircins*tnvpn*srnvklyttsck*tnnwfiscsrsykkkht*kcrikkky*svgrk
nrreii*y*l*yknnknilrdsnifkyiltittin*ksk*is***itficklsngctffi
*nifiisttt*nlstttnqfnpfktdtfkr*n*r***q***lkfc*knrkrrknrkrr*g
krkrekekeiki*xknklit


Frame B:
kkkxixinxxgxny****chqx*rvvlevtiavlviiva*ii*vs*xdlmv*NNQQLRPV
LTLDASTAKLMYQTSQEMSSYIQQVANEPTIGLFHVQDHIRRNIPKNVELKKNIKALGEK
IEEKSFDIDYSTKTIKTFSEIQTFSNISSLLQQSIERANKLVNNKSLLFVNSQMAAPSSS
KTFSSFQQQHKIYQQQQTNLTPSKPTLSNDKTNDNNNNNNNLNFVEKIEKEEKIEKEDEG
KEKEKKKKR*rfkxkin**p


Frame C:
kkxex*lixxdxiinnnnvinxke*xwk*p*qx**s**hk*yksakxiswcrttnnldqy
*h*mhqqln*ctklvkkcqviynklqmnqqlvyfmfkii*eetylkmsn*kkilkrwekk
*krnhliliivqkq*khsqrfkhfqiyphyynnqlkeqin*liinhfyl*tlkwlhllhl
khfhhfnnnikfinnnkpi*plqnrhfqtikltiiitiiit*illkk*kkkkk*kkkmre
kkkrkrkrdkdlxkk*innq
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06695-1 (Contig-U06695-1Q)
/CSM_Contig/Contig-U06695-1Q.Seq.d
         (782 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06695-1 (Contig-U06695-1Q) /CSM_Contig/Conti...  1120  0.0
Contig-U11240-1 (Contig-U11240-1Q) /CSM_Contig/Conti...    42  9e-04
Contig-U11507-1 (Contig-U11507-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U07084-1 (Contig-U07084-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U06468-1 (Contig-U06468-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U04044-1 (Contig-U04044-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U00884-1 (Contig-U00884-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U14698-1 (Contig-U14698-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U14562-1 (Contig-U14562-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U14558-1 (Contig-U14558-1Q) /CSM_Contig/Conti...    38  0.014

>Contig-U06695-1 (Contig-U06695-1Q) /CSM_Contig/Contig-U06695-1Q.Seq.d
          Length = 782

 Score = 1120 bits (565), Expect = 0.0
 Identities = 607/616 (98%)
 Strand = Plus / Plus

                                                                       
Query: 12  gaattntaattaattncaanggatntaattattaataataataatgtcatcaatnttaaa 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12  gaattntaattaattncaanggatntaattattaataataataatgtcatcaatnttaaa 71

                                                                       
Query: 72  gagtagtnctggaagtaaccatagcagtnctagtaatcatagtagcataaataatataag 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  gagtagtnctggaagtaaccatagcagtnctagtaatcatagtagcataaataatataag 131

                                                                       
Query: 132 tcagctaagnggatctcatggtgtagaacaaccaacaacttagaccagtattaacattag 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 tcagctaagnggatctcatggtgtagaacaaccaacaacttagaccagtattaacattag 191

                                                                       
Query: 192 atgcatcaacagctaaactaatgtaccaaactagtcaagaaatgtcaagttatatacaac 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 atgcatcaacagctaaactaatgtaccaaactagtcaagaaatgtcaagttatatacaac 251

                                                                       
Query: 252 aagttgcaaatgaaccaacaattggtttatttcatgttcaagatcatataagaagaaaca 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aagttgcaaatgaaccaacaattggtttatttcatgttcaagatcatataagaagaaaca 311

                                                                       
Query: 312 tacctaaaaatgtcgaattnnnnnnnnntattaaagcgttgggagaaaaaatagaagaga 371
           |||||||||||||||||||         ||||||||||||||||||||||||||||||||
Sbjct: 312 tacctaaaaatgtcgaattaaaaaaaaatattaaagcgttgggagaaaaaatagaagaga 371

                                                                       
Query: 372 aatcatttgatattgattatagtacaaaaacaataaaaacattctcagagattcaaacat 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aatcatttgatattgattatagtacaaaaacaataaaaacattctcagagattcaaacat 431

                                                                       
Query: 432 tttcaaatatatcctcactattacaacaatcaattgaaagagcaaataaattagttaata 491
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tttcaaatatatcctcactattacaacaatcaattgaaagagcaaataaattagttaata 491

                                                                       
Query: 492 ataaatcacttttatttgtaaactctcaaatggctgcaccttcttcatctaaaacatttt 551
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ataaatcacttttatttgtaaactctcaaatggctgcaccttcttcatctaaaacatttt 551

                                                                       
Query: 552 catcatttcaacaacaacataaaatttatcaacaacaacaaaccaatttaaccccttcaa 611
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 catcatttcaacaacaacataaaatttatcaacaacaacaaaccaatttaaccccttcaa 611

                           
Query: 612 aaccgacactttcaaa 627
           ||||||||||||||||
Sbjct: 612 aaccgacactttcaaa 627


>Contig-U11240-1 (Contig-U11240-1Q) /CSM_Contig/Contig-U11240-1Q.Seq.d
          Length = 889

 Score = 42.1 bits (21), Expect = 9e-04
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 560 caacaacaacataaaatttatcaacaacaacaa 592
           |||||||||||  || |||||||||||||||||
Sbjct: 755 caacaacaacaacaattttatcaacaacaacaa 787


>Contig-U11507-1 (Contig-U11507-1Q) /CSM_Contig/Contig-U11507-1Q.Seq.d
          Length = 2800

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 37  taattattaataataataat 56
           ||||||||||||||||||||
Sbjct: 682 taattattaataataataat 701


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 35,344
Number of Sequences: 6905
Number of extensions: 35344
Number of successful extensions: 9780
Number of sequences better than 10.0: 510
length of query: 782
length of database: 5,674,871
effective HSP length: 16
effective length of query: 766
effective length of database: 5,564,391
effective search space: 4262323506
effective search space used: 4262323506
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11. 9
Homology vs DNA 
Query= Contig-U06695-1 (Contig-U06695-1Q) /CSM_Contig/Contig-U06695-1Q.Seq.d
         (782 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU265056) Dictyostelium discoideum vegetative cDNA clone:VS...   400   0.0    2
(AU265055) Dictyostelium discoideum vegetative cDNA clone:VS...   289   e-175  3
(AC184501) Strongylocentrotus purpuratus clone R3-16H10, WOR...    40   0.29   4
(CU554524) Spc_A1CF02 cDNA clone of Developmental Stages Lib...    34   0.37   2
(EK455503) 1095468109038 Global-Ocean-Sampling_GS-32-01-01-1...    46   0.41   2
(CU062481) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   0.44   5
(CR628406) Zebrafish DNA sequence from clone CH211-146A2 in ...    36   0.68   3
(CU179646) Zebrafish DNA sequence from clone CH211-5G9.            40   0.88   3
(BX072538) Zebrafish DNA sequence from clone DKEY-217K21 in ...    36   1.2    7
(CV845750) ID0AEE13AF10RM1 ID0AEE Acyrthosiphon pisum cDNA c...    40   1.2    2
(CV848331) ID0AEE5BC03RM1 ID0AEE Acyrthosiphon pisum cDNA cl...    40   1.4    2
(BG851054) 1024030B07.y2 C. reinhardtii CC-1690, normalized,...    44   1.8    2
(DQ642846) Plasmodium falciparum HB3 apicoplast, complete ge...    38   1.8    3
(BX005425) Zebrafish DNA sequence from clone DKEY-7O6 in lin...    38   2.0    7
(BX957316) Zebrafish DNA sequence from clone CH211-120B19 in...    46   2.0    1
(EF197847) Capsella rubella miR319a microRNA locus, genomic ...    46   2.0    1
(AM473893) Vitis vinifera contig VV78X254780.8, whole genome...    46   2.0    1
(AC214158) Homo sapiens FOSMID clone ABC12-46993200J22 from ...    46   2.0    1
(AC024603) Homo sapiens chromosome 10 clone RP11-325D15, com...    46   2.0    1
(AZ779386) 2M0015E14R Mouse 10kb plasmid UUGC1M library Mus ...    46   2.0    1
(EK274412) 1095462270710 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.0    1
(EK212879) 1095460105214 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.0    1
(DX439322) BE1071_H04_R IASMA L1 HindIII BAC library Vitis v...    46   2.0    1
(CL689366) PRI0151a_A11_2 - PRI0151a.BR (812) Mixed stage fo...    46   2.0    1
(CL338005) RPCI44_265D15.f RPCI-44 Sus scrofa genomic clone ...    46   2.0    1
(EY636402) CAWW25342.fwd CAWW Capitella sp. I ECS-2004 Subtr...    46   2.0    1
(EY636401) CAWW25342.rev CAWW Capitella sp. I ECS-2004 Subtr...    46   2.0    1
(EY632485) CAWW22728.rev CAWW Capitella sp. I ECS-2004 Subtr...    46   2.0    1
(EY624172) CAWW18380.fwd CAWW Capitella sp. I ECS-2004 Subtr...    46   2.0    1
(EY624171) CAWW18380.rev CAWW Capitella sp. I ECS-2004 Subtr...    46   2.0    1
(EY550309) CAWT18024.fwd CAWT Capitella sp. I ECS-2004 Prima...    46   2.0    1
(EY550308) CAWT18024.rev CAWT Capitella sp. I ECS-2004 Prima...    46   2.0    1
(CP000817) Lysinibacillus sphaericus C3-41, complete genome.       46   2.0    1
(CT737148) Zebrafish DNA sequence from clone CH211-149K21 in...    38   2.3    3
(L36899) Saccharomyces cerevisiae mitochondrion origin of re...    38   2.5    3
(BX322663) Zebrafish DNA sequence from clone CH211-224D23 in...    40   2.9    4
(AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5...    36   3.1    6
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    44   3.4    3
(BQ515045) EST622460 Generation of a set of potato cDNA clon...    40   3.5    2
(BC036312) Homo sapiens cDNA clone IMAGE:4837142.                  36   3.9    3
(CR385039) Zebrafish DNA sequence from clone DKEYP-31D1 in l...    36   4.0    4
(AL049828) Human chromosome 14 DNA sequence BAC R-1074O12 of...    42   4.1    3
(EE672804) SAAH-aab78f11.g1 Agen 0058 Schmidtea mediterranea...    36   4.2    2
(EE672607) SAAH-aab76g03.g1 Agen 0058 Schmidtea mediterranea...    36   4.2    2
(Z70268) Caenorhabditis elegans Cosmid T21E8.                      32   4.2    2
(CZ776667) OC__Ba0136G07.f OC__Ba Oryza coarctata genomic cl...    40   4.2    2
(EE671479) SAAH-aac58c07.g1 Agen 0058 Schmidtea mediterranea...    36   4.2    2
(EG344572) SAAH-aad33d06.g1 Agen 0058 Schmidtea mediterranea...    36   4.3    2
(EE668768) SAAH-aab46c01.g1 Agen 0058 Schmidtea mediterranea...    36   4.4    2
(EE671585) SAAH-aac59c11.g1 Agen 0058 Schmidtea mediterranea...    36   4.4    2
(AC027333) Homo sapiens chromosome 5 clone CTD-2194F12, comp...    36   4.4    5
(AC137645) Danio rerio strain Tue clone CH211-11E12, WORKING...    40   4.4    5
(EJ012465) 1095407043801 Global-Ocean-Sampling_GS-26-01-01-1...    40   4.5    2
(EG408442) SAAH-aac58c07.b1 Agen 0058 Schmidtea mediterranea...    36   4.5    2
(AC189495) Brassica rapa subsp. pekinensis clone KBrB085G17,...    42   4.5    3
(EG414421) SAAH-aab21e02.b1 Agen 0058 Schmidtea mediterranea...    36   4.6    2
(AC023398) Homo sapiens clone RP11-770P21, WORKING DRAFT SEQ...    36   4.8    4
(CR352236) Zebrafish DNA sequence from clone DKEYP-123E12 in...    40   4.8    4
(EY384323) CAXA5085.fwd CAXA Helobdella robusta Subtracted L...    36   4.8    2
(ER632326) 1093018507717 Global-Ocean-Sampling_GS-36-01-01-2...    32   5.1    2
(DU538451) OO__Ba0010B09.r OO__Ba Oryza officinalis genomic ...    40   5.1    2
(BX323084) Zebrafish DNA sequence from clone DKEYP-9G5 in li...    38   5.2    3
(CT027540) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   5.3    3
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    40   5.5    7
(AX392733) Sequence 23 from Patent WO0212526.                      36   7.4    5
(AR707080) Sequence 23 from patent US 6933145.                     36   7.4    5
(CR848031) Zebrafish DNA sequence from clone DKEY-288I10 in ...    44   7.8    1
(CR377214) Zebrafish DNA sequence from clone CH211-261F19 in...    44   7.8    1
(BX470267) Zebrafish DNA sequence from clone DKEY-98H23.           44   7.8    1
(BX000361) Zebrafish DNA sequence from clone DKEY-181F18 in ...    44   7.8    1
(AL607146) Mouse DNA sequence from clone RP23-312G6 on chrom...    44   7.8    1
(AC158555) Mus musculus chromosome 3, clone RP23-14B10, comp...    44   7.8    1
(AC131679) Mus musculus BAC clone RP23-339I6 from chromosome...    44   7.8    1
(AC102418) Mus musculus chromosome 3, clone RP24-499L10, com...    44   7.8    1
(CT573096) RP43-083N14, complete sequence.                         44   7.8    1
(AC220994) Pan troglodytes chromosome X clone CH251-252B20 m...    44   7.8    1
(AC187504) Rhesus macaque BAC clone CH250-41H12 from chromos...    44   7.8    1
(AC122175) Pan troglodytes clone rp43-99g12, complete sequence.    44   7.8    1
(CU633203) M.truncatula DNA sequence from clone MTE1-29P1 on...    44   7.8    1
(CU302334) Medicago truncatula chromosome 5 clone mth2-5j11,...    44   7.8    1
(AM429076) Vitis vinifera contig VV78X039912.12, whole genom...    44   7.8    1
(AL137079) Arabidopsis thaliana DNA chromosome 3, BAC clone ...    44   7.8    1
(AC147774) Medicago truncatula chromosome 2 BAC clone mth2-1...    44   7.8    1
(DD000807) PLANT ARTIFICIAL CHROMOSOME COMPOSITIONS AND METH...    44   7.8    1
(AX059492) Sequence 225 from Patent WO0055325.                     44   7.8    1
(AR777046) Sequence 201 from patent US 6972197.                    44   7.8    1
(AL596285) Human DNA sequence from clone RP11-330K13 on chro...    44   7.8    1
(AL592205) Human DNA sequence from clone RP11-184D20 on chro...    44   7.8    1
(AC131459) Rattus norvegicus clone CH230-286N23, *** SEQUENC...    44   7.8    1
(AC125979) Rattus norvegicus clone CH230-185G19, *** SEQUENC...    44   7.8    1
(AC123429) Rattus norvegicus clone CH230-433P4, *** SEQUENCI...    44   7.8    1
(AC121683) Rattus norvegicus clone CH230-447N17, *** SEQUENC...    44   7.8    1
(AC120937) Rattus norvegicus clone CH230-21F3, *** SEQUENCIN...    44   7.8    1
(AC118481) Rattus norvegicus clone CH230-10J17, *** SEQUENCI...    44   7.8    1
(AC111805) Rattus norvegicus clone CH230-31B9, *** SEQUENCIN...    44   7.8    1
(AC095332) Rattus norvegicus clone CH230-101B1, *** SEQUENCI...    44   7.8    1
(AC095079) Rattus norvegicus clone CH230-6P12, *** SEQUENCIN...    44   7.8    1
(CU571002) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.8    1
(CT027790) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   7.8    1
(AL590107) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   7.8    1

>(AU265056) Dictyostelium discoideum vegetative cDNA clone:VSF326,
           3' end single read.
          Length = 637

 Score =  400 bits (202), Expect(2) = 0.0
 Identities = 202/202 (100%)
 Strand = Plus / Plus


Query: 340 tattaaagcgttgggagaaaaaatagaagagaaatcatttgatattgattatagtacaaa 399
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 tattaaagcgttgggagaaaaaatagaagagaaatcatttgatattgattatagtacaaa 253


Query: 400 aacaataaaaacattctcagagattcaaacattttcaaatatatcctcactattacaaca 459
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aacaataaaaacattctcagagattcaaacattttcaaatatatcctcactattacaaca 313


Query: 460 atcaattgaaagagcaaataaattagttaataataaatcacttttatttgtaaactctca 519
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 atcaattgaaagagcaaataaattagttaataataaatcacttttatttgtaaactctca 373


Query: 520 aatggctgcaccttcttcatct 541
           ||||||||||||||||||||||
Sbjct: 374 aatggctgcaccttcttcatct 395

 Score =  365 bits (184), Expect(2) = 0.0
 Identities = 184/184 (100%)
 Strand = Plus / Plus


Query: 147 tcatggtgtagaacaaccaacaacttagaccagtattaacattagatgcatcaacagcta 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tcatggtgtagaacaaccaacaacttagaccagtattaacattagatgcatcaacagcta 60


Query: 207 aactaatgtaccaaactagtcaagaaatgtcaagttatatacaacaagttgcaaatgaac 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aactaatgtaccaaactagtcaagaaatgtcaagttatatacaacaagttgcaaatgaac 120


Query: 267 caacaattggtttatttcatgttcaagatcatataagaagaaacatacctaaaaatgtcg 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caacaattggtttatttcatgttcaagatcatataagaagaaacatacctaaaaatgtcg 180


Query: 327 aatt 330
           ||||
Sbjct: 181 aatt 184

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 658,478,926
Number of extensions: 45950515
Number of successful extensions: 6486406
Number of sequences better than 10.0: 139
Length of query: 782
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 758
Effective length of database: 97,308,875,965
Effective search space: 73760127981470
Effective search space used: 73760127981470
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.22
Homology vs Protein 
Query= Contig-U06695-1 (Contig-U06695-1Q) /CSM_Contig/Contig-U06695-1Q.Seq.d
         (782 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54JC6) RecName: Full=UPF0402 protein;                               251   1e-65
(A7SGF0) RecName: Full=UPF0402 protein v1g233178;                      63   9e-09
FN357308_9(FN357308|pid:none) Schistosoma mansoni genome sequenc...    57   7e-07
(Q4S3C1) RecName: Full=UPF0402 protein;                                56   1e-06
DQ213993_1(DQ213993|pid:none) Taeniopygia guttata clone 0058P004...    52   2e-05
(Q8IR45) RecName: Full=UPF0402 protein CG32590;  &AE014298_2151(...    52   3e-05
(Q96FH0) RecName: Full=UPF0402 protein;  &BC010931_1(BC010931|pi...    47   5e-04
EF087137_1(EF087137|pid:none) Picea sitchensis clone WS02918_G06...    43   0.010
EU959899_1(EU959899|pid:none) Zea mays clone 220353 hypothetical...    38   0.32
BT055800_1(BT055800|pid:none) Zea mays full-length cDNA clone ZM...    38   0.32
AK145010_1(AK145010|pid:none) Mus musculus mammary gland RCB-052...    37   0.92
(Q3UMB5) RecName: Full=Smith-Magenis syndrome chromosomal region...    37   0.92
BC085095_1(BC085095|pid:none) Mus musculus Smith-Magenis syndrom...    37   0.92
(P47460) RecName: Full=Cytadherence high molecular weight protei...    36   1.2
CP001399_1522(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,...    35   2.7
AF467440_1(AF467440|pid:none) Homo sapiens Smith-Magenis syndrom...    35   3.5
(Q9UWW9) RecName: Full=V-type ATP synthase subunit D; AltName: F...    35   3.5
CP000678_524(CP000678|pid:none) Methanobrevibacter smithii ATCC ...    35   3.5
CP000500_417(CP000500|pid:none) Pichia stipitis CBS 6054 chromos...    35   3.5
(Q6ZUS5) RecName: Full=Coiled-coil domain-containing protein 121...    35   3.5
AC074091_5(AC074091|pid:none) Homo sapiens BAC clone RP11-158I13...    35   3.5
(Q8TEV9) RecName: Full=Smith-Magenis syndrome chromosomal region...    35   3.5
BC074129_1(BC074129|pid:none) Xenopus laevis MGC81838 protein, m...    35   3.5
CP000439_1356(CP000439|pid:none) Francisella tularensis subsp. n...    34   4.6
AP009484_291(AP009484|pid:none) Macrococcus caseolyticus JCSC540...    34   6.0
EU730902_10(EU730902|pid:none) Brachypodium distachyon clone BAC...    33   7.8

>(Q54JC6) RecName: Full=UPF0402 protein;
          Length = 240

 Score =  251 bits (642), Expect(2) = 1e-65
 Identities = 134/154 (87%), Positives = 134/154 (87%)
 Frame = +2

Query: 164 QQLRPVLTLDASTAKLMYQTSQEMSSYIQQVANEPTIGLFHVQDHIRRNIPKNVELKKNI 343
           QQLRPVLTLDASTAKLMYQTSQEMSSYIQQVANEPTIGLFHVQDHIRRNIPKNVELKKNI
Sbjct: 37  QQLRPVLTLDASTAKLMYQTSQEMSSYIQQVANEPTIGLFHVQDHIRRNIPKNVELKKNI 96

Query: 344 KALGEKIEEKSFDIDYSTKTIKTFSEIQTFSNISSLLQQSIERANKLVNNKSLLFVNSQM 523
           KALGEKIEEKSFDIDYSTKTIKTFSEIQTFSNISSLLQQSIERANKLVNNKSLLFVNSQM
Sbjct: 97  KALGEKIEEKSFDIDYSTKTIKTFSEIQTFSNISSLLQQSIERANKLVNNKSLLFVNSQM 156

Query: 524 AAPXXXXXXXXXXXXXXXXXXXXTNLTPSKPTLS 625
           AAP                    TNLTPSKPTLS
Sbjct: 157 AAPSSSKTFSSFQQQHKIYQQQQTNLTPSKPTLS 190

 Score = 22.3 bits (46), Expect(2) = 1e-65
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 133 QLXGSHGVEQ 162
           QL GSHGVEQ
Sbjct: 27  QLSGSHGVEQ 36

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 607,317,394
Number of extensions: 8469498
Number of successful extensions: 23732
Number of sequences better than 10.0: 26
Number of HSP's gapped: 23707
Number of HSP's successfully gapped: 27
Length of query: 260
Length of database: 1,040,966,779
Length adjustment: 126
Effective length of query: 134
Effective length of database: 637,226,869
Effective search space: 85388400446
Effective search space used: 85388400446
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.78  gvh: 0.41  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.02
 nuc: 0.08  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  4.0 %: peroxisomal

>> prediction for Contig-U06695-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0