| Contig-U06678-1 |
| Contig ID |
Contig-U06678-1 |
| Contig update |
2001. 8.30 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
221 |
| Chromosome number (1..6, M) |
2 |
| Chromosome length |
8467578 |
| Start point |
5168181 |
| End point |
5167988 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
1 |
| Number of EST |
2 |
| Link to clone list |
U06678 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11. 9 |
| Homology vs DNA |
Query= Contig-U06678-1 (Contig-U06678-1Q) /CSM_Contig/Contig-U06678-1Q.Seq.d
(221 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 147 2e-31 1
(AU264718) Dictyostelium discoideum vegetative cDNA clone:VS... 147 2e-31 1
(AU264717) Dictyostelium discoideum vegetative cDNA clone:VS... 147 2e-31 1
(BX957361) Zebrafish DNA sequence from clone DKEY-269O24 in ... 50 0.032 1
(CP000207) Drosophila melanogaster genomic scaffold 21100002... 50 0.032 1
(AC120277) Rattus norvegicus clone CH230-171B18, *** SEQUENC... 50 0.032 1
(AC015087) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 50 0.032 1
(ET111914) QM0AAC21BC05FM1 CCH3 Citrus clementina genomic cl... 50 0.032 1
(ET090021) QM0AAA14DC04FM1 CCL1 Citrus clementina genomic cl... 50 0.032 1
(EI893769) VUH1-72C16TV VUUBBa (VUH1) Vigna unguiculata geno... 50 0.032 1
(DU898914) 411489 Tomato HindIII BAC Library Solanum lycoper... 50 0.032 1
(DU859013) 55708 Tomato HindIII BAC Library Solanum lycopers... 50 0.032 1
(CR848741) Zebrafish DNA sequence from clone DKEYP-68A7 in l... 48 0.12 1
(AC106790) Homo sapiens chromosome 5 clone RP11-376E20, comp... 48 0.12 1
(AC106771) Homo sapiens chromosome 5 clone RP11-308B16, comp... 48 0.12 1
(CU651589) M.truncatula DNA sequence from clone MTH2-193L12 ... 46 0.16 2
(CR936968) Zebrafish DNA sequence from clone DKEY-13N23 in l... 46 0.49 1
(CR391904) Zebrafish DNA sequence from clone DKEY-165J6 in l... 46 0.49 1
(AL450426) Human DNA sequence from clone RP11-317C20 on chro... 46 0.49 1
(AC231167) Bos taurus clone CH240-68M9, WORKING DRAFT SEQUEN... 46 0.49 1
(AC223716) Bos taurus clone CH240-45G11, WORKING DRAFT SEQUE... 46 0.49 1
(AC189152) Cavia porcellus clone CH234-56B17, WORKING DRAFT ... 46 0.49 1
(ET744463) CHO_OF290xp20f1.ab1 CHO_OF Nicotiana tabacum geno... 46 0.49 1
(CZ907233) 4011006A10.y2 4011 - RescueMu Grid J Zea mays gen... 46 0.49 1
(BW562466) Ciona savignyi cDNA, clone:cslv065a12, 3'end, sin... 46 0.49 1
(CT033816) Zebrafish DNA sequence from clone CH211-109N19 in... 44 1.9 1
(BX957306) Zebrafish DNA sequence from clone DKEY-119H24 in ... 44 1.9 1
(BX908795) Zebrafish DNA sequence from clone DKEY-92J12 in l... 44 1.9 1
(AC148598) Xenopus tropicalis clone CH216-154B13, complete s... 44 1.9 1
(AM448070) Vitis vinifera, whole genome shotgun sequence, co... 44 1.9 1
(AX344275) Sequence 122 from Patent WO0200926. 44 1.9 1
(AR119125) Sequence 1 from patent US 6150098. 44 1.9 1
(AC084200) Homo sapiens 12q BAC RP11-654D12 (Roswell Park Ca... 44 1.9 1
(AC012497) Homo sapiens BAC clone RP11-349I7 from 2, complet... 44 1.9 1
(AC159393) Bos taurus clone CH240-71J18, WORKING DRAFT SEQUE... 44 1.9 1
(AC153703) Bos taurus clone CH240-28O16, WORKING DRAFT SEQUE... 44 1.9 1
(AC147205) Xenopus tropicalis clone CH216-163D19, WORKING DR... 44 1.9 1
(AC095937) Rattus norvegicus clone CH230-10F3, WORKING DRAFT... 44 1.9 1
(AC079055) Homo sapiens clone RP11-164M22, WORKING DRAFT SEQ... 44 1.9 1
(BX901959) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 44 1.9 1
(AC219495) Bos taurus clone CH240-332J14, WORKING DRAFT SEQU... 44 1.9 1
(AC218250) Bos taurus clone CH240-289I22, WORKING DRAFT SEQU... 44 1.9 1
(AC205085) Macaca mulatta clone CH250-477B6, WORKING DRAFT S... 44 1.9 1
(AC192313) Atelerix albiventris clone LB4-505D4, WORKING DRA... 44 1.9 1
(AC175768) Bos taurus clone CH240-381L7, WORKING DRAFT SEQUE... 44 1.9 1
(AC169362) Bos taurus clone CH240-202O12, WORKING DRAFT SEQU... 44 1.9 1
(ER328913) 1092344239271 Global-Ocean-Sampling_GS-34-01-01-1... 44 1.9 1
(EK479310) 1095469504800 Global-Ocean-Sampling_GS-32-01-01-1... 44 1.9 1
(EK405386) 1095500039644 Global-Ocean-Sampling_GS-31-01-01-1... 44 1.9 1
(EK354037) 1095468355193 Global-Ocean-Sampling_GS-31-01-01-1... 44 1.9 1
(EK252117) 1095460285541 Global-Ocean-Sampling_GS-31-01-01-1... 44 1.9 1
(EK167821) 1095458060647 Global-Ocean-Sampling_GS-31-01-01-1... 44 1.9 1
(EI937272) VUH2-81H11TV VUUBBa (VUH2) Vigna unguiculata geno... 44 1.9 1
(EI927432) VUH2-67G13TR VUUBBa (VUH2) Vigna unguiculata geno... 44 1.9 1
(EI924149) VUH2-59N24TV VUUBBa (VUH2) Vigna unguiculata geno... 44 1.9 1
(EI924033) VUH2-60H14TR VUUBBa (VUH2) Vigna unguiculata geno... 44 1.9 1
(EI913652) VUH2-64G13TR VUUBBa (VUH2) Vigna unguiculata geno... 44 1.9 1
(EI898772) VUH2-20L7TR VUUBBa (VUH2) Vigna unguiculata genom... 44 1.9 1
(EI897260) VUH2-19O13TV VUUBBa (VUH2) Vigna unguiculata geno... 44 1.9 1
(EI896967) VUH1-73I24TV VUUBBa (VUH1) Vigna unguiculata geno... 44 1.9 1
(EI895953) VUH1-90F21TV VUUBBa (VUH1) Vigna unguiculata geno... 44 1.9 1
(EI895939) VUH1-90D17TV VUUBBa (VUH1) Vigna unguiculata geno... 44 1.9 1
(EI895577) VUH1-77D13TR VUUBBa (VUH1) Vigna unguiculata geno... 44 1.9 1
(EI895097) VUH1-77M10TR VUUBBa (VUH1) Vigna unguiculata geno... 44 1.9 1
(DX539563) GH_MBb0059M14r GH_MBb Gossypium hirsutum genomic ... 44 1.9 1
(DX468330) Cpl10314 Papaya Genomic DNA BAC Library Carica pa... 44 1.9 1
(DU975797) 398679 Tomato MboI BAC Library Solanum lycopersic... 44 1.9 1
(DU940712) 367533 Tomato EcoRI BAC Library Solanum lycopersi... 44 1.9 1
(DE512257) Bombyx mori genomic DNA, Fosmid clone:GBMFno128_g... 44 1.9 1
(CZ907243) 4011006B05.y2 4011 - RescueMu Grid J Zea mays gen... 44 1.9 1
(BX142513) Danio rerio genomic clone DKEY-103N4, genomic sur... 44 1.9 1
(EC291771) BRAINF091694F17 POSSUM_01-POSSUM-C-BRAIN-2KB Tric... 44 1.9 1
(CV155916) MICROMATHUS236_5_A11_1_081 Micromalthus debilis c... 44 1.9 1
(EY319636) CAWX6988.fwd CAWX Helobdella robusta Primary Earl... 44 1.9 1
(AM487145) Vitis vinifera contig VV78X227169.4, whole genome... 36 2.2 2
(AC102844) Mus musculus chromosome 3, clone RP24-389H4, comp... 30 3.7 2
(BX072541) Mouse DNA sequence from clone RP23-189G9 on chrom... 34 3.7 2
(AC161810) Mus musculus chromosome 3, clone RP24-363L5, comp... 30 3.8 2
(AC232041) Solanum tuberosum strain Diploid genotype RH89-03... 30 3.8 2
(CX589181) TTE00035155 Amplicon Express - Conjugative Form T... 40 4.9 2
(EK333479) 1095467032773 Global-Ocean-Sampling_GS-31-01-01-1... 36 5.7 2
(AB198741) Drosophila obscura mitochondrial DNA, origin of r... 38 6.9 2
(CU469569) Zebrafish DNA sequence from clone CH73-76B22 in l... 42 7.7 1
(CU138537) Zebrafish DNA sequence from clone DKEY-126N10. 42 7.7 1
(CT573860) Zebrafish DNA sequence from clone DKEY-189N21 in ... 42 7.7 1
(CR388125) Zebrafish DNA sequence from clone DKEY-102G19 in ... 42 7.7 1
(CR382335) Zebrafish DNA sequence from clone DKEY-56I16 in l... 42 7.7 1
(BX510366) Zebrafish DNA sequence from clone DKEY-189P24 in ... 42 7.7 1
(BX294164) Zebrafish DNA sequence from clone CH211-266D19 in... 42 7.7 1
(AL928800) Zebrafish DNA sequence from clone CH211-233G21 in... 42 7.7 1
(AL662891) Mouse DNA sequence from clone RP23-20N14 on chrom... 42 7.7 1
(AC158402) Mus musculus chromosome 1, clone RP24-328M23, com... 42 7.7 1
(AC158132) Mus musculus chromosome 1, clone RP23-11K8, compl... 42 7.7 1
(AC102609) Mus musculus, clone RP23-403I3, complete sequence. 42 7.7 1
(AC102127) Mus musculus chromosome 1, clone RP23-202A19, com... 42 7.7 1
(AC206537) Pongo abelii BAC clone CH276-59D20 from chromosom... 42 7.7 1
(AC202676) Rhesus Macaque BAC CH250-377M10 () complete sequ... 42 7.7 1
(AC198408) Pan troglodytes BAC clone CH251-288N22 from chrom... 42 7.7 1
(AC192188) Pan troglodytes BAC clone CH251-277E23 from chrom... 42 7.7 1
(AC147379) Pan troglodytes BAC clone RP43-175C18 from chromo... 42 7.7 1
>(AC116305) Dictyostelium discoideum chromosome 2 map 1005175-1418323
strain AX4, complete sequence.
Length = 413138
Score = 147 bits (74), Expect = 2e-31
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 1 cacccaccaatacactctcataaagatataaatatacccacatatttaaataattaattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152789 cacccaccaatacactctcataaagatataaatatacccacatatttaaataattaattt 152848
Query: 61 atttaaacccttcc 74
||||||||||||||
Sbjct: 152849 atttaaacccttcc 152862
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 118,488,266
Number of extensions: 9665630
Number of successful extensions: 3058448
Number of sequences better than 10.0: 223
Length of query: 221
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 198
Effective length of database: 93,106,754,628
Effective search space: 18435137416344
Effective search space used: 18435137416344
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
|
| protein update |
2009. 6.22 |
| Homology vs Protein |
|
| PSORT |
- |
| VS (DIR, S) |
1 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |