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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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Contig-U06620-1
Contig ID Contig-U06620-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U06620-1 (Contig-U06620-1Q) /CSM_Contig/Contig-U06620-1Q.Seq.d
GTAGCAAAAAATTTGAAGATAAAGTTTCAAAAGCCTGCATCAAGTTTGCC
AATCGTGGTTATTTCCACAATGATTTAGACCGCTGCCATGTAGCAAAAAT
GAAATATAAAAATACTACTGAAGTTGTTTTTATTGATCTTTATAGNGTCG
AAAAAATAAAAGGTAATCAAAAAAAAGAAAAAGCTGATGCAATGTTTAAT
ACTTTATATGGAAACTCAACACCAATCGTTCACTATTCCTCATCTTCATC
CCCTTTTTCATCCTCTTCTTCATCCTNTTCAAAAAGGCCCCCAAAAATTA
AAGTACAAAAGAAAAGAAATACGCAATATTTTAAAAAAACAGCCTNTTNT
AAAATCCCTCCAAAATTTNGAACCAAACTATTAACATTTCATACCCCTGA
AAAGGATCCATNTTTTAAAAAAACTCTTGTAAATAAAAAATAGTATAGTT
TAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gap no gap
Contig length 496
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 668662
End point 669119
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U06620
List of clone(s) 

est1=VSE254Z,1,497
Translated Amino Acid sequence 
SKKFEDKVSKACIKFANRGYFHNDLDRCHVAKMKYKNTTEVVFIDLYXVEKIKGNQKKEK
ADAMFNTLYGNSTPIVHYSSSSSPFSSSSSSXSKRPPKIKVQKKRNTQYFKKTAXXKIPP
KFXTKLLTFHTPEKDPXFKKTLVNKK*yslnkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
vaknlkikfqkpasslpivvistmi*taam*qk*nikillklfllifixskk*kvikkkk
klmqclilymetqhqsftiphlhplfhpllhpxqkgpqklkykrkeirnilkkqpxxksl
qnxepny*hfiplkrihxlkkll*iknsiv*ikkkkkkkkkkkkk


Frame B:
*qki*r*sfkslhqvcqswlfpq*frplpcsknei*kyy*scfy*sl*xrknkr*skkrk
s*cnv*yfiwklntnrslflifipffilffilfkkapkn*stkekkyaif*knslx*nps
kixnqtinisyp*kgsxf*knsck*kiv*fk*kkkkkkkkkkkkk


Frame C:
SKKFEDKVSKACIKFANRGYFHNDLDRCHVAKMKYKNTTEVVFIDLYXVEKIKGNQKKEK
ADAMFNTLYGNSTPIVHYSSSSSPFSSSSSSXSKRPPKIKVQKKRNTQYFKKTAXXKIPP
KFXTKLLTFHTPEKDPXFKKTLVNKK*yslnkkkkkkkkkkkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06620-1 (Contig-U06620-1Q)
/CSM_Contig/Contig-U06620-1Q.Seq.d
         (496 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06620-1 (Contig-U06620-1Q) /CSM_Contig/Conti...   291  4e-79
Contig-U11196-1 (Contig-U11196-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U10073-1 (Contig-U10073-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U12071-1 (Contig-U12071-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U04171-1 (Contig-U04171-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U13938-1 (Contig-U13938-1Q) /CSM_Contig/Conti...    36  0.034
Contig-U12049-1 (Contig-U12049-1Q) /CSM_Contig/Conti...    36  0.034
Contig-U11131-1 (Contig-U11131-1Q) /CSM_Contig/Conti...    36  0.034
Contig-U13566-1 (Contig-U13566-1Q) /CSM_Contig/Conti...    34  0.14

>Contig-U06620-1 (Contig-U06620-1Q) /CSM_Contig/Contig-U06620-1Q.Seq.d
          Length = 496

 Score =  291 bits (147), Expect = 4e-79
 Identities = 150/150 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtagcaaaaaatttgaagataaagtttcaaaagcctgcatcaagtttgccaatcgtggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtagcaaaaaatttgaagataaagtttcaaaagcctgcatcaagtttgccaatcgtggtt 60

                                                                       
Query: 61  atttccacaatgatttagaccgctgccatgtagcaaaaatgaaatataaaaatactactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atttccacaatgatttagaccgctgccatgtagcaaaaatgaaatataaaaatactactg 120

                                         
Query: 121 aagttgtttttattgatctttatagngtcg 150
           ||||||||||||||||||||||||||||||
Sbjct: 121 aagttgtttttattgatctttatagngtcg 150


 Score =  186 bits (94), Expect = 2e-47
 Identities = 94/94 (100%)
 Strand = Plus / Plus

                                                                       
Query: 183 gctgatgcaatgtttaatactttatatggaaactcaacaccaatcgttcactattcctca 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gctgatgcaatgtttaatactttatatggaaactcaacaccaatcgttcactattcctca 242

                                             
Query: 243 tcttcatcccctttttcatcctcttcttcatcct 276
           ||||||||||||||||||||||||||||||||||
Sbjct: 243 tcttcatcccctttttcatcctcttcttcatcct 276


 Score =  165 bits (83), Expect = 6e-41
 Identities = 109/116 (93%)
 Strand = Plus / Plus

                                                                       
Query: 340 cagcctnttntaaaatccctccaaaatttngaaccaaactattaacatttcatacccctg 399
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 cagcctnttntaaaatccctccaaaatttngaaccaaactattaacatttcatacccctg 399

                                                                   
Query: 400 aaaaggatccatnttttnnnnnnnctcttgtaaataaaaaatagtatagtttaaat 455
           |||||||||||||||||       ||||||||||||||||||||||||||||||||
Sbjct: 400 aaaaggatccatnttttaaaaaaactcttgtaaataaaaaatagtatagtttaaat 455


>Contig-U11196-1 (Contig-U11196-1Q) /CSM_Contig/Contig-U11196-1Q.Seq.d
          Length = 2477

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 254 tttttcatcctcttcttcat 273
           ||||||||||||||||||||
Sbjct: 749 tttttcatcctcttcttcat 730


 Score = 30.2 bits (15), Expect = 2.1
 Identities = 27/31 (87%)
 Strand = Plus / Minus

                                           
Query: 243  tcttcatcccctttttcatcctcttcttcat 273
            ||||| ||| ||| ||| |||||||||||||
Sbjct: 1648 tcttcttcctcttcttcctcctcttcttcat 1618


>Contig-U10073-1 (Contig-U10073-1Q) /CSM_Contig/Contig-U10073-1Q.Seq.d
          Length = 585

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 257 ttcatcctcttcttcatcct 276
           ||||||||||||||||||||
Sbjct: 574 ttcatcctcttcttcatcct 555


 Score = 40.1 bits (20), Expect = 0.002
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 257 ttcatcctcttcttcatcct 276
           ||||||||||||||||||||
Sbjct: 493 ttcatcctcttcttcatcct 474


 Score = 40.1 bits (20), Expect = 0.002
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 243 tcttcatcccctttttcatcctcttcttcatc 274
           ||||||||| ||| |||||||||||| |||||
Sbjct: 576 tcttcatcctcttcttcatcctcttcatcatc 545


 Score = 36.2 bits (18), Expect = 0.034
 Identities = 24/26 (92%)
 Strand = Plus / Minus

                                     
Query: 243 tcttcatcccctttttcatcctcttc 268
           ||||||||| ||| ||||||||||||
Sbjct: 495 tcttcatcctcttcttcatcctcttc 470


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6382
Number of Sequences: 6905
Number of extensions: 6382
Number of successful extensions: 644
Number of sequences better than 10.0: 197
length of query: 496
length of database: 5,674,871
effective HSP length: 16
effective length of query: 480
effective length of database: 5,564,391
effective search space: 2670907680
effective search space used: 2670907680
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11. 9
Homology vs DNA 
Query= Contig-U06620-1 (Contig-U06620-1Q) /CSM_Contig/Contig-U06620-1Q.Seq.d
         (496 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU262975) Dictyostelium discoideum vegetative cDNA clone:VS...   291   e-154  3
(AM055942) Toxoplasma gondii RH, genomic DNA chromosome Ia.        56   0.001  1
(EK084929) 1092961137303 Global-Ocean-Sampling_GS-31-01-01-1...    56   0.001  1
(EK045517) 1092959547878 Global-Ocean-Sampling_GS-31-01-01-1...    56   0.001  1
(FG750600) G1146P341RM14.T0 Anolis carolinensis pooled norma...    38   0.016  2
(FG791706) G1148P317RP2.T0 Anolis carolinensis pooled normal...    38   0.016  2
(FG764681) G1146P340RF1.T0 Anolis carolinensis pooled normal...    38   0.016  2
(FG755303) G1146P319RO5.T0 Anolis carolinensis pooled normal...    38   0.016  2
(FG739146) G1145P336RD6.T0 Anolis carolinensis pooled normal...    38   0.016  2
(FG764622) G1146P348RA20.T0 Anolis carolinensis pooled norma...    38   0.016  2
(FG791843) G1148P334RM24.T0 Anolis carolinensis pooled norma...    38   0.016  2
(FG657715) G1142P321RP22.T0 Anolis carolinensis pooled norma...    38   0.016  2
(FG662172) G1142P319RD19.T0 Anolis carolinensis pooled norma...    38   0.016  2
(FG092869) s13dLA57G03RT010_528509 Lupinus albus L. (white l...    38   0.060  2
(CR382121) Kluyveromyces lactis strain NRRL Y-1140 chromosom...    50   0.075  1
(AL034557) Plasmodium falciparum MAL4P1.                           50   0.075  1
(EL578880) Physarum06981 Physarum polycephalum starvation st...    50   0.075  1
(EL566024) Physarum01113 Physarum polycephalum starvation st...    50   0.075  1
(AC202321) Medicago truncatula clone mth2-15o9, WORKING DRAF...    36   0.18   2
(BC151955) Danio rerio zgc:171740, mRNA (cDNA clone MGC:1717...    48   0.30   1
(EK090237) 1092961212035 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.30   1
(EK070203) 1092960185079 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.30   1
(CZ543709) SRAA-aad51e09.g1 Strongyloides ratti whole genome...    48   0.30   1
(CT027659) Macaca mulatta chromosome 9 BAC CH250-288D8.            36   0.64   2
(CA981821) AGENCOURT_11241184 Wellcome CRC pSK egg Xenopus l...    32   0.83   2
(BU914279) AGENCOURT_10492362 NICHD_XGC_OO1 Xenopus laevis c...    32   0.83   2
(CA985465) AGENCOURT_11076778 NICHD_XGC_OO1 Xenopus laevis c...    32   0.83   2
(BP735973) Xenopus laevis NBRP cDNA clone:XL507c02ex, 3' end.      32   0.83   2
(EB644585) AGENCOURT_77440519 NICHD_XGC_thy Xenopus laevis c...    32   0.83   2
(DC013593) Xenopus laevis NBRP cDNA clone:rxlk134m18ex, 3' end.    32   0.83   2
(CB938827) IpCGJx13_39_A08_23 IpCGJx13 Ictalurus punctatus c...    36   0.83   2
(DC033551) Xenopus laevis NBRP cDNA clone:xlk53g20ex, 5' end.      32   0.83   2
(BU905859) AGENCOURT_10456545 NICHD_XGC_Emb1 Xenopus laevis ...    32   0.83   2
(DC096083) Xenopus laevis NBRP cDNA clone:rxl329p13, 3' end.       32   0.83   2
(DY562880) AGENCOURT_69612652 NICHD_XGC_Ov1 Xenopus laevis c...    32   0.83   2
(DC077159) Xenopus laevis NBRP cDNA clone:rxl260h07, 3' end.       32   0.84   2
(BX854564) RZPD Xenopus laevis cDNA clone IMAGp998B0614226 =...    32   0.84   2
(BP680812) Xenopus laevis NBRP cDNA clone:XL435o16ex, 5' end.      32   0.84   2
(DC124364) Xenopus laevis NBRP cDNA clone:xl304g08, 5' end.        32   0.84   2
(DC054065) Xenopus laevis NBRP cDNA clone:xlk4h21ex, 5' end.       32   0.84   2
(BP677037) Xenopus laevis NBRP cDNA clone:XL424k15ex, 5' end.      32   0.84   2
(DC102152) Xenopus laevis NBRP cDNA clone:xl228e15, 5' end.        32   0.84   2
(BJ033603) Xenopus laevis cDNA clone:XL022e18, 5' end, singl...    32   0.84   2
(DC128626) Xenopus laevis NBRP cDNA clone:xl318n18, 5' end.        32   0.84   2
(BP698780) Xenopus laevis NBRP cDNA clone:XL485m10ex, 5' end.      32   0.84   2
(BJ038614) Xenopus laevis cDNA clone:XL043p19, 5' end, singl...    32   0.84   2
(ES543338) Kr_K06_02F24_attB1_seq K06 Euphausia superba cDNA...    32   0.84   2
(BV481376) sno26a07.b1 Clint Pan troglodytes verus STS genom...    46   1.2    1
(BV455512) qlz95h04.g1 Clint Pan troglodytes verus STS genom...    46   1.2    1
(AL669892) Mouse DNA sequence from clone RP23-31K14 on chrom...    46   1.2    1
(AC187921) Pan troglodytes chromosome X clone CH251-78B18 ma...    46   1.2    1
(AC181984) Pan troglodytes chromosome X clone CH251-244H4 ma...    46   1.2    1
(AC189510) Brassica rapa subsp. pekinensis clone KBrB089D07,...    46   1.2    1
(AF241728) Homo sapiens chromosome X clone RP4-646N3 map p11...    46   1.2    1
(AC022212) Homo sapiens BAC clone RP11-708E9 from Xq23, comp...    46   1.2    1
(AC160342) Bos taurus clone CH240-94L20, WORKING DRAFT SEQUE...    46   1.2    1
(AC156532) Bos taurus clone CH240-58K21, WORKING DRAFT SEQUE...    46   1.2    1
(AC117332) Rattus norvegicus clone CH230-332H3, *** SEQUENCI...    46   1.2    1
(AC108556) Rattus norvegicus clone CH230-101M22, *** SEQUENC...    46   1.2    1
(AC104552) Mus musculus clone RP24-150N3, LOW-PASS SEQUENCE ...    46   1.2    1
(AC096243) Rattus norvegicus clone CH230-35J15, *** SEQUENCI...    46   1.2    1
(AC212425) Macaca mulatta clone CH250-359G9, WORKING DRAFT S...    46   1.2    1
(AC180319) Strongylocentrotus purpuratus clone R3-3119E14, W...    46   1.2    1
(AC180296) Strongylocentrotus purpuratus clone R3-3119I18, W...    46   1.2    1
(AQ636705) RPCI-11-481E7.TV RPCI-11 Homo sapiens genomic clo...    46   1.2    1
(EK122717) 1092964704563 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.2    1
(CP000099) Methanosarcina barkeri str. Fusaro, complete genome.    46   1.2    1
(AX151655) Sequence 260 from Patent WO0138351.                     38   2.0    2
(U84223) Canid herpesvirus 1 cIR6, cUS2, cUS3, cUS4, cUS6, c...    32   2.7    2
(AR869637) Sequence 52 from patent US 7041813.                     32   2.7    2
(AR869636) Sequence 51 from patent US 7041813.                     32   2.7    2
(AR120641) Sequence 52 from patent US 6159478.                     32   2.7    2
(AR120640) Sequence 51 from patent US 6159478.                     32   2.7    2
(AR037674) Sequence 52 from patent US 5804197.                     32   2.7    2
(AR037673) Sequence 51 from patent US 5804197.                     32   2.7    2
(AR869599) Sequence 2 from patent US 7041813.                      32   2.8    2
(AR869598) Sequence 1 from patent US 7041813.                      32   2.8    2
(AR120603) Sequence 2 from patent US 6159478.                      32   2.8    2
(AR120602) Sequence 1 from patent US 6159478.                      32   2.8    2
(AR037636) Sequence 2 from patent US 5804197.                      32   2.8    2
(AR037635) Sequence 1 from patent US 5804197.                      32   2.8    2
(AR007996) Sequence 2 from patent US 5753235.                      32   2.8    2
(AR007995) Sequence 1 from patent US 5753235.                      32   2.8    2
(U49380) Canine herpesvirus gI, gE, US8.5, and US9 genes, co...    32   2.8    2
(U61387) Canine herpesvirus unique short region, protein kin...    32   2.9    2
(BT027616) Gasterosteus aculeatus clone CGX62-G08 mRNA seque...    34   2.9    2
(DN689120) CGX62-G08.y1d-s SHGC-CGX Gasterosteus aculeatus c...    34   3.0    2
(AR869601) Sequence 5 from patent US 7041813.                      32   3.0    2
(AR120605) Sequence 5 from patent US 6159478.                      32   3.0    2
(AR037638) Sequence 5 from patent US 5804197.                      32   3.0    2
(AR007998) Sequence 5 from patent US 5753235.                      32   3.0    2
(DW612431) CLJ269-A04.y1d-s SHGC-CLJ2 Gasterosteus aculeatus...    34   3.0    2
(EY283328) 1106492597609 03BABOON-C-01-1-3KB Papio anubis cD...    32   3.1    2
(FG799996) G1148P311RN7.T0 Anolis carolinensis pooled normal...    32   3.1    2
(EL486139) CHUS1351.b1_M02.ab1 CHU(LMS) puzzle sunflower Hel...    32   3.1    2
(EI107595) ChBa_A_032A06.x01 Chesapeake Bay viral metagenome...    34   3.1    2
(FG661211) G1142P321FF18.T0 Anolis carolinensis pooled norma...    32   3.1    2
(DR078089) RTFEPL1_1_G11.g1_A029 Roots plus added iron Pinus...    34   3.1    2
(FG662219) G1142P319FD19.T0 Anolis carolinensis pooled norma...    32   3.1    2
(BQ410949) GA__Ed0035E06r Gossypium arboreum 7-10 dpa fiber ...    34   3.1    2

>(AU262975) Dictyostelium discoideum vegetative cDNA clone:VSE254,
           3' end single read.
          Length = 497

 Score =  291 bits (147), Expect(3) = e-154
 Identities = 150/150 (100%)
 Strand = Plus / Plus


Query: 1   gtagcaaaaaatttgaagataaagtttcaaaagcctgcatcaagtttgccaatcgtggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtagcaaaaaatttgaagataaagtttcaaaagcctgcatcaagtttgccaatcgtggtt 60


Query: 61  atttccacaatgatttagaccgctgccatgtagcaaaaatgaaatataaaaatactactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atttccacaatgatttagaccgctgccatgtagcaaaaatgaaatataaaaatactactg 120


Query: 121 aagttgtttttattgatctttatagngtcg 150
           ||||||||||||||||||||||||||||||
Sbjct: 121 aagttgtttttattgatctttatagngtcg 150

 Score =  186 bits (94), Expect(3) = e-154
 Identities = 94/94 (100%)
 Strand = Plus / Plus


Query: 183 gctgatgcaatgtttaatactttatatggaaactcaacaccaatcgttcactattcctca 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gctgatgcaatgtttaatactttatatggaaactcaacaccaatcgttcactattcctca 242


Query: 243 tcttcatcccctttttcatcctcttcttcatcct 276
           ||||||||||||||||||||||||||||||||||
Sbjct: 243 tcttcatcccctttttcatcctcttcttcatcct 276

 Score =  127 bits (64), Expect(3) = e-154
 Identities = 76/76 (100%)
 Strand = Plus / Plus


Query: 340 cagcctnttntaaaatccctccaaaatttngaaccaaactattaacatttcatacccctg 399
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 cagcctnttntaaaatccctccaaaatttngaaccaaactattaacatttcatacccctg 399


Query: 400 aaaaggatccatnttt 415
           ||||||||||||||||
Sbjct: 400 aaaaggatccatnttt 415

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 391,325,539
Number of extensions: 25157318
Number of successful extensions: 2221494
Number of sequences better than 10.0: 168
Length of query: 496
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 473
Effective length of database: 93,106,754,628
Effective search space: 44039494939044
Effective search space used: 44039494939044
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 6.22
Homology vs Protein 
Query= Contig-U06620-1 (Contig-U06620-1Q) /CSM_Contig/Contig-U06620-1Q.Seq.d
         (496 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116956_83(AC116956|pid:none) Dictyostelium discoideum chromoso...    44   0.003
AC091553_25(AC091553|pid:none) Trypanosoma brucei chromosome 7 c...    33   4.8

>AC116956_83(AC116956|pid:none) Dictyostelium discoideum chromosome
           2 map 1418423-1684967 strain AX4, complete sequence.
          Length = 434

 Score = 43.5 bits (101), Expect = 0.003
 Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +3

Query: 9   KFEDKVSKACIKFANRGYFHNDLDRCHVAKMKYKNTTE-VVFIDLYXVEKIKGNQKKEKA 185
           +F   V  AC++FA  GY H DL R HVA+    N    VVFIDL  V+ I        +
Sbjct: 295 RFLKLVELACLRFARAGYKHLDLKRRHVARHSTPNNDRVVVFIDLSSVDPIDPLDIDAVS 354

Query: 186 DAMFNTL 206
           + M+ TL
Sbjct: 355 NEMYQTL 361

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 573,803,618
Number of extensions: 8532973
Number of successful extensions: 15511
Number of sequences better than 10.0: 2
Number of HSP's gapped: 15509
Number of HSP's successfully gapped: 2
Length of query: 165
Length of database: 1,040,966,779
Length adjustment: 119
Effective length of query: 46
Effective length of database: 659,656,864
Effective search space: 30344215744
Effective search space used: 30344215744
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.61  gvh: 0.35  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for Contig-U06620-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0