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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U06617-1
Contig ID Contig-U06617-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U06617-1 (Contig-U06617-1Q) /CSM_Contig/Contig-U06617-1Q.Seq.d
CAGTACCAGCCTATCTTTTGGATAGAGAGGGAGTTAGTAGAGCAAAGGTA
CTCTCAAATATGGTTAAACAAAAGAGAAAAGAGAAAGCAGGTAAATGGGA
TGTACCATTACCAAAAGTTAGAGCCATTAGTGAGGATGAAATGTTTAAAG
TTGTTAAATCTGGTAAACGTCAAAAGAAAGCATGGAAACGTTTTGTTACA
AAAGTCACCTTTGTTGGTGAAGGTTTCACTCGTAAACCACCCAAGTATGA
ACGTTTTATTCGTCCAACTGGTTTACGTTTCAAAAAGGCTCATGTAACTC
ATCCAGAGTTAAAATCAACTTTTTATCTCGATATTTTATCAGTTAAAAAG
AATCCACAATCTCCAACCTATACTCAATTGGGTGTTATCACTAAAGGTAC
TATCCTTGAAGTTAATGTTTCCGATCTTGGTTTAGTAACTCAAACTGGTA
AAGTAGTTTGGGGTAAAATGGCTCAAGTAACTAATAATCCTGAAAATGAT
GGTTGTATTAATGCAGTTTTATTAGTTTAAAAAATATATATTTTTTTTTT
ATTAAAATTATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
GAAATAAAAAAAAAGAAATAAAAAAAAAAAAATTAAAAATTAA
Gap no gap
Contig length 643
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 3525640
End point 3526283
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 2
Link to clone list U06617
List of clone(s) 

est1=VSE517Z,1,623
est2=VSE232Z,352,644
Translated Amino Acid sequence 
VPAYLLDREGVSRAKVLSNMVKQKRKEKAGKWDVPLPKVRAISEDEMFKVVKSGKRQKKA
WKRFVTKVTFVGEGFTRKPPKYERFIRPTGLRFKKAHVTHPELKSTFYLDILSVKKNPQS
PTYTQLGVITKGTILEVNVSDLGLVTQTGKVVWGKMAQVTNNPENDGCINAVLLV*kiyi
ffllkly*kkkkkkkkkkkrnkkkeikkkklki
Translated Amino Acid sequence (All Frames) 
Frame A:
qyqpifwierelveqrysqiwlnkrekrkqvngmyhyqkleplvrmkclkllnlvnvkrk
hgnvllqkspllvkvslvnhpsmnvlfvqlvyvskrlm*liqs*nqlfisifyqlkrihn
lqpilnwvlslkvlslklmfpilv**lklvk*fgvkwlk*liilkmmvvlmqfy*fkkyi
fffy*nyikkkkkkkkkkkkeikkkk*kkkn*kl


Frame B:
stslsfg*rgs**skgtlkyg*tkekresr*mgctitks*sh**g*nv*sc*iw*tskes
metfcykshlcw*rfhs*ttqv*tfyssnwftfqkgscnssrvkinflsryfis*kesti
snlysigcyh*ryyp*s*cfrswfsnsnw*sslg*ngssn**s*k*wly*csfislkniy
fffikiilkkkkkkkkkkkkk*kkrnkkkkikn*


Frame C:
VPAYLLDREGVSRAKVLSNMVKQKRKEKAGKWDVPLPKVRAISEDEMFKVVKSGKRQKKA
WKRFVTKVTFVGEGFTRKPPKYERFIRPTGLRFKKAHVTHPELKSTFYLDILSVKKNPQS
PTYTQLGVITKGTILEVNVSDLGLVTQTGKVVWGKMAQVTNNPENDGCINAVLLV*kiyi
ffllkly*kkkkkkkkkkkrnkkkeikkkklki
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06617-1 (Contig-U06617-1Q)
/CSM_Contig/Contig-U06617-1Q.Seq.d
         (643 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06617-1 (Contig-U06617-1Q) /CSM_Contig/Conti...  1118  0.0
Contig-U01120-1 (Contig-U01120-1Q) /CSM_Contig/Conti...    46  5e-05
Contig-U04561-1 (Contig-U04561-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U10263-1 (Contig-U10263-1Q) /CSM_Contig/Conti...    42  7e-04
Contig-U06354-1 (Contig-U06354-1Q) /CSM_Contig/Conti...    42  7e-04
Contig-U14699-1 (Contig-U14699-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U13061-1 (Contig-U13061-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U12180-1 (Contig-U12180-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U10807-1 (Contig-U10807-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U09447-1 (Contig-U09447-1Q) /CSM_Contig/Conti...    40  0.003

>Contig-U06617-1 (Contig-U06617-1Q) /CSM_Contig/Contig-U06617-1Q.Seq.d
          Length = 643

 Score = 1118 bits (564), Expect = 0.0
 Identities = 564/564 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtaccagcctatcttttggatagagagggagttagtagagcaaaggtactctcaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cagtaccagcctatcttttggatagagagggagttagtagagcaaaggtactctcaaata 60

                                                                       
Query: 61  tggttaaacaaaagagaaaagagaaagcaggtaaatgggatgtaccattaccaaaagtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tggttaaacaaaagagaaaagagaaagcaggtaaatgggatgtaccattaccaaaagtta 120

                                                                       
Query: 121 gagccattagtgaggatgaaatgtttaaagttgttaaatctggtaaacgtcaaaagaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gagccattagtgaggatgaaatgtttaaagttgttaaatctggtaaacgtcaaaagaaag 180

                                                                       
Query: 181 catggaaacgttttgttacaaaagtcacctttgttggtgaaggtttcactcgtaaaccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 catggaaacgttttgttacaaaagtcacctttgttggtgaaggtttcactcgtaaaccac 240

                                                                       
Query: 241 ccaagtatgaacgttttattcgtccaactggtttacgtttcaaaaaggctcatgtaactc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccaagtatgaacgttttattcgtccaactggtttacgtttcaaaaaggctcatgtaactc 300

                                                                       
Query: 301 atccagagttaaaatcaactttttatctcgatattttatcagttaaaaagaatccacaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atccagagttaaaatcaactttttatctcgatattttatcagttaaaaagaatccacaat 360

                                                                       
Query: 361 ctccaacctatactcaattgggtgttatcactaaaggtactatccttgaagttaatgttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctccaacctatactcaattgggtgttatcactaaaggtactatccttgaagttaatgttt 420

                                                                       
Query: 421 ccgatcttggtttagtaactcaaactggtaaagtagtttggggtaaaatggctcaagtaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ccgatcttggtttagtaactcaaactggtaaagtagtttggggtaaaatggctcaagtaa 480

                                                                       
Query: 481 ctaataatcctgaaaatgatggttgtattaatgcagttttattagtttaaaaaatatata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ctaataatcctgaaaatgatggttgtattaatgcagttttattagtttaaaaaatatata 540

                                   
Query: 541 ttttttttttattaaaattatatt 564
           ||||||||||||||||||||||||
Sbjct: 541 ttttttttttattaaaattatatt 564


 Score = 36.2 bits (18), Expect = 0.045
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 529 aaaaaatatatatttttt 546
           ||||||||||||||||||
Sbjct: 546 aaaaaatatatatttttt 529


>Contig-U01120-1 (Contig-U01120-1Q) /CSM_Contig/Contig-U01120-1Q.Seq.d
          Length = 1718

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 535  tatatattttttttttattaaaattat 561
            |||||||||||||||| ||||||||||
Sbjct: 1666 tatatatttttttttttttaaaattat 1640


>Contig-U04561-1 (Contig-U04561-1Q) /CSM_Contig/Contig-U04561-1Q.Seq.d
          Length = 206

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 526 tttaaaaaatatatattttttt 547
           ||||||||||||||||||||||
Sbjct: 178 tttaaaaaatatatattttttt 157


 Score = 36.2 bits (18), Expect = 0.045
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 529 aaaaaatatatatttttt 546
           ||||||||||||||||||
Sbjct: 158 aaaaaatatatatttttt 175


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,633
Number of Sequences: 6905
Number of extensions: 18633
Number of successful extensions: 3579
Number of sequences better than 10.0: 541
length of query: 643
length of database: 5,674,871
effective HSP length: 16
effective length of query: 627
effective length of database: 5,564,391
effective search space: 3488873157
effective search space used: 3488873157
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11. 9
Homology vs DNA 
Query= Contig-U06617-1 (Contig-U06617-1Q) /CSM_Contig/Contig-U06617-1Q.Seq.d
         (643 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU263162) Dictyostelium discoideum vegetative cDNA clone:VS...  1070   0.0    2
(AU262960) Dictyostelium discoideum vegetative cDNA clone:VS...   246   8e-61  1
(DY889376) CeleSEQ10902 Cunninghamella elegans pBluescript (...   101   2e-42  4
(EH011039) USDA-FP_182008 Lysiphlebus testaceipes adult whol...    94   2e-33  4
(AZ547790) ENTEX73TR Entamoeba histolytica Sheared DNA Entam...    68   1e-32  4
(EH014043) USDA-FP_186782 Lysiphlebus testaceipes adult whol...    94   7e-29  4
(DV742635) ID0AFF7CF08CM1 ID0AFF Acyrthosiphon pisum cDNA cl...    50   2e-28  5
(DY885460) CeleSEQ709 Cunninghamella elegans pBluescript (Ec...    76   2e-28  5
(FF300165) 279337597 Pea aphid whole body normalized full le...    50   5e-28  5
(EX638746) 256625190 Pea aphid whole body normalized full le...    50   7e-28  5
(EX611116) 255375479 Pea aphid whole body normalized full le...    50   8e-28  5
(FF297122) 279314533 Pea aphid whole body normalized full le...    50   9e-28  5
(FC662265) CAXW2553.rev CAXW Lottia gigantea from female gon...    60   9e-28  5
(FF332526) 280449855 Pea aphid whole body normalized full le...    50   9e-28  5
(FF297090) 279315984 Pea aphid whole body normalized full le...    50   1e-27  5
(FC662266) CAXW2553.fwd CAXW Lottia gigantea from female gon...    60   2e-27  5
(DW273303) UI-S-GS1-acr-p-08-0-UI.s1 UI-S-GS1 Euprymna scolo...    66   3e-27  4
(FC838396) CBHI7736.rev CBHI Metridium senile tentacle Metri...    66   1e-26  4
(FC828466) CBHI2293.rev CBHI Metridium senile tentacle Metri...    66   1e-26  4
(FC827791) CBHI1917.rev CBHI Metridium senile tentacle Metri...    66   1e-26  4
(FC828735) CBHI2439.rev CBHI Metridium senile tentacle Metri...    66   1e-26  4
(FC830619) CBHI3551.rev CBHI Metridium senile tentacle Metri...    66   2e-26  4
(EW967398) LS_12_J02_T7 Headlice composite library with all ...    70   2e-26  3
(FC829574) CBHI2931.rev CBHI Metridium senile tentacle Metri...    66   2e-26  4
(DT509204) WS02423.BR_B13 PTxD-ICC-N-A-14 Populus trichocarp...    56   2e-26  5
(CV237142) WS01226.B21_D18 PT-GT-FL-A-3 Populus trichocarpa ...    56   2e-26  5
(FC827675) CBHI1851.rev CBHI Metridium senile tentacle Metri...    66   2e-26  4
(DT476537) WS01229.B21_O19 PT-GT-FL-A-3 Populus trichocarpa ...    56   2e-26  5
(DT473532) WS01229.BR_O19 PT-GT-FL-A-3 Populus trichocarpa c...    56   2e-26  5
(CV832843) ID0ACC21AH02RM1 ID0ACC Acyrthosiphon pisum cDNA c...    50   4e-26  5
(DW273678) UI-S-GS1-act-g-20-0-UI.s1 UI-S-GS1 Euprymna scolo...    66   4e-26  3
(DW255071) UI-S-GB1-aaj-g-06-0-UI.s1 UI-S-GB1 Euprymna scolo...    66   4e-26  3
(DW278760) UI-S-HH0-adi-m-12-0-UI.s1 UI-S-HH0 Euprymna scolo...    66   5e-26  3
(DW258800) UI-S-GG1-aba-j-13-0-UI.s1 UI-S-GG1 Euprymna scolo...    66   5e-26  3
(DW284220) UI-S-HH0-aea-o-18-0-UI.s1 UI-S-HH0 Euprymna scolo...    66   5e-26  3
(DW257052) UI-S-GG0-aas-a-08-0-UI.s1 UI-S-GG0 Euprymna scolo...    66   5e-26  3
(EF146115) Populus trichocarpa clone WS0115_K01 unknown mRNA.      56   7e-26  5
(FC651901) CAXW12182.fwd CAXW Lottia gigantea from female go...    54   1e-25  5
(FC674385) CAXW9979.rev CAXW Lottia gigantea from female gon...    54   1e-25  5
(FC745224) CBBI1479.rev CBBI Lottia gigantea 26h,37h,61h Lar...    54   1e-25  5
(FC729782) CBBG5596.rev CBBG Lottia gigantea 12,15,18h embry...    54   2e-25  5
(FC616007) CAXS8015.rev CAXS Lottia gigantea from head, foot...    54   2e-25  5
(FC755947) CBBI9053.rev CBBI Lottia gigantea 26h,37h,61h Lar...    54   2e-25  5
(FC623929) CAXT3623.rev CAXT Lottia gigantea from mantle Lot...    54   2e-25  5
(FC721109) CBBG13830.fwd CBBG Lottia gigantea 12,15,18h embr...    54   3e-25  5
(FC755948) CBBI9053.fwd CBBI Lottia gigantea 26h,37h,61h Lar...    54   3e-25  5
(FC664331) CAXW3765.rev CAXW Lottia gigantea from female gon...    54   3e-25  5
(FC705132) CAXY2984.rev CAXY Lottia gigantea from male gonad...    54   3e-25  5
(FC664332) CAXW3765.fwd CAXW Lottia gigantea from female gon...    54   4e-25  5
(CV999091) iv48f06.g1 Right Cardiac Ventricle (DOGEST6) Cani...    56   6e-25  5
(DW266401) UI-S-GN1-abq-m-18-0-UI.s1 UI-S-GN1 Euprymna scolo...    66   6e-25  3
(CV999137) iv48h10.g1 Right Cardiac Ventricle (DOGEST6) Cani...    56   6e-25  5
(CE619032) tigr-gss-dog-17000313619017 Dog Library Canis lup...    56   8e-25  5
(EH014924) USDA-FP_187577 Lysiphlebus testaceipes adult whol...    94   8e-25  3
(CV998405) iv48f06.b1 Right Cardiac Ventricle (DOGEST6) Cani...    56   8e-25  5
(DN408303) LIB4007-004-Q6-K1-B7 LIB4007 Canis lupus familiar...    54   1e-24  5
(CV998410) iv48h10.b1 Right Cardiac Ventricle (DOGEST6) Cani...    56   1e-24  5
(FC835109) CBHI5951.rev CBHI Metridium senile tentacle Metri...    66   2e-24  4
(FC616008) CAXS8015.fwd CAXS Lottia gigantea from head, foot...    54   4e-24  5
(FG211421) Aafb00382 Antheraea assama fifth instar larval fa...    72   6e-24  4
(CV238099) WS0125.B21_E20 PT-GT-FL-A-3 Populus trichocarpa c...    56   6e-24  4
(CV237876) WS0124.B21_H01 PT-GT-FL-A-3 Populus trichocarpa c...    56   9e-24  4
(DC876148) Samia cynthia ricini cDNA, clone: S06A01NCLL0013_...    64   1e-23  5
(ES626582) NGPR004TR NGPP Nasonia giraulti cDNA, mRNA sequence.   107   1e-23  2
(DC872691) Samia cynthia ricini cDNA, clone: S06A01NCLL0003_...    64   1e-23  5
(ES616317) NGPBA47TR NGPA Nasonia giraulti cDNA, mRNA sequence.   107   1e-23  2
(ES645468) NVPR590TR NVPP Nasonia vitripennis cDNA, mRNA seq...   107   1e-23  2
(EB079812) EST1230434 Nasonia vitripennis (wasp) pre-pupal E...   107   1e-23  2
(ES623305) NGPP735TR NGPP Nasonia giraulti cDNA, mRNA sequence.   107   1e-23  2
(ES644083) NVPQG49TR NVPP Nasonia vitripennis cDNA, mRNA seq...   107   1e-23  2
(EB079608) EST1230230 Nasonia vitripennis (wasp) pre-pupal E...   107   1e-23  2
(ES621144) NGPE008TR NGPA Nasonia giraulti cDNA, mRNA sequence.   107   1e-23  2
(ES640688) NVPEQ37TR NVPA Nasonia vitripennis cDNA, mRNA seq...   107   2e-23  2
(EB079063) EST1229685 Nasonia vitripennis (wasp) pupal-adult...   107   2e-23  2
(ES630760) NGPT140TR NGPP Nasonia giraulti cDNA, mRNA sequence.   107   2e-23  2
(ES624436) NGPPR42TR NGPP Nasonia giraulti cDNA, mRNA sequence.   107   2e-23  2
(ES640723) NVPER01TR NVPA Nasonia vitripennis cDNA, mRNA seq...   107   2e-23  2
(EB079068) EST1229690 Nasonia vitripennis (wasp) pupal-adult...   107   2e-23  2
(DV740406) ID0AFF1BD02CM1 ID0AFF Acyrthosiphon pisum cDNA cl...    50   2e-23  5
(CV174224) EUCLIDIA25PCR_H09_1_076 Euclidia glyphica cDNA Eu...    64   3e-23  4
(CV174511) EUCLIDIA2POLYT_H09_1_076 Euclidia glyphica cDNA E...    64   4e-23  4
(CX987130) DOG_EST_P36D08 Canis familiaris testis cDNA Canis...    50   4e-23  5
(DV609617) EST1212613 Glossina morsitans morsitans Fat body ...    76   4e-23  3
(FC782913) CBGC14015.rev CBGC Lottia gigantea 15h 18h embryo...    54   4e-23  4
(FC619615) CAXT10095.rev CAXT Lottia gigantea from mantle Lo...    54   5e-23  4
(FC605337) CAXS2043.rev CAXS Lottia gigantea from head, foot...    54   5e-23  4
(FC619616) CAXT10095.fwd CAXT Lottia gigantea from mantle Lo...    54   5e-23  4
(EX196311) SGT20d3_G07 normalized library from a mix of tamm...    84   5e-23  2
(FC627763) CAXT5714.rev CAXT Lottia gigantea from mantle Lot...    54   5e-23  4
(FC642498) CAXU6022.rev CAXU Lottia gigantea from female gon...    54   6e-23  4
(FC562150) CAWF4237.rev CAWF Lottia gigantea from mantle (H)...    54   6e-23  4
(FC740910) CBBI12132.rev CBBI Lottia gigantea 26h,37h,61h La...    54   6e-23  4
(FC598147) CAXS11277.rev CAXS Lottia gigantea from head, foo...    54   6e-23  4
(DV609618) EST1212614 Glossina morsitans morsitans Fat body ...    76   6e-23  3
(FC630345) CAXT7080.rev CAXT Lottia gigantea from mantle Lot...    54   7e-23  4
(FC630346) CAXT7080.fwd CAXT Lottia gigantea from mantle Lot...    54   8e-23  4
(FC605338) CAXS2043.fwd CAXS Lottia gigantea from head, foot...    54   8e-23  4
(FC642499) CAXU6022.fwd CAXU Lottia gigantea from female gon...    54   9e-23  4
(FE267170) CAZO5952.rev CAZO Naegleria gruberi Flagellate St...    70   1e-22  3
(EC360251) IMMUNEF088807J4 POSSUM_01-C-POSSUM-IMMUNE-2KB Tri...    72   2e-22  4

>(AU263162) Dictyostelium discoideum vegetative cDNA clone:VSE517,
           3' end single read.
          Length = 623

 Score = 1070 bits (540), Expect(2) = 0.0
 Identities = 540/540 (100%)
 Strand = Plus / Plus


Query: 1   cagtaccagcctatcttttggatagagagggagttagtagagcaaaggtactctcaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cagtaccagcctatcttttggatagagagggagttagtagagcaaaggtactctcaaata 60


Query: 61  tggttaaacaaaagagaaaagagaaagcaggtaaatgggatgtaccattaccaaaagtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tggttaaacaaaagagaaaagagaaagcaggtaaatgggatgtaccattaccaaaagtta 120


Query: 121 gagccattagtgaggatgaaatgtttaaagttgttaaatctggtaaacgtcaaaagaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gagccattagtgaggatgaaatgtttaaagttgttaaatctggtaaacgtcaaaagaaag 180


Query: 181 catggaaacgttttgttacaaaagtcacctttgttggtgaaggtttcactcgtaaaccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 catggaaacgttttgttacaaaagtcacctttgttggtgaaggtttcactcgtaaaccac 240


Query: 241 ccaagtatgaacgttttattcgtccaactggtttacgtttcaaaaaggctcatgtaactc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccaagtatgaacgttttattcgtccaactggtttacgtttcaaaaaggctcatgtaactc 300


Query: 301 atccagagttaaaatcaactttttatctcgatattttatcagttaaaaagaatccacaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atccagagttaaaatcaactttttatctcgatattttatcagttaaaaagaatccacaat 360


Query: 361 ctccaacctatactcaattgggtgttatcactaaaggtactatccttgaagttaatgttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctccaacctatactcaattgggtgttatcactaaaggtactatccttgaagttaatgttt 420


Query: 421 ccgatcttggtttagtaactcaaactggtaaagtagtttggggtaaaatggctcaagtaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ccgatcttggtttagtaactcaaactggtaaagtagtttggggtaaaatggctcaagtaa 480


Query: 481 ctaataatcctgaaaatgatggttgtattaatgcagttttattagtttaaaaaatatata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ctaataatcctgaaaatgatggttgtattaatgcagttttattagtttaaaaaatatata 540

 Score = 28.2 bits (14), Expect(2) = 0.0
 Identities = 14/14 (100%)
 Strand = Plus / Plus


Query: 551 attaaaattatatt 564
           ||||||||||||||
Sbjct: 551 attaaaattatatt 564

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 652,861,894
Number of extensions: 38400696
Number of successful extensions: 3165376
Number of sequences better than 10.0: 3050
Length of query: 643
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 620
Effective length of database: 93,106,754,628
Effective search space: 57726187869360
Effective search space used: 57726187869360
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.22
Homology vs Protein 
Query= Contig-U06617-1 (Contig-U06617-1Q) /CSM_Contig/Contig-U06617-1Q.Seq.d
         (643 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54GN8) RecName: Full=Ribosome biogenesis protein NSA2 homolog;      353   3e-96
BT082393_1(BT082393|pid:none) Anoplopoma fimbria clone afim-evh-...   305   9e-82
BT075285_1(BT075285|pid:none) Osmerus mordax clone omor-eva-510-...   304   1e-81
(O95478) RecName: Full=Ribosome biogenesis protein NSA2 homolog;...   302   6e-81
AF238866_1(AF238866|pid:none) Mus musculus LNR42 mRNA, complete ...   302   6e-81
(Q3SX11) RecName: Full=Ribosome biogenesis protein NSA2 homolog;...   302   6e-81
(Q9CR47) RecName: Full=Ribosome biogenesis protein NSA2 homolog;...   302   6e-81
BC086776_1(BC086776|pid:none) Mus musculus RIKEN cDNA 5730427N09...   302   6e-81
AJ719405_1(AJ719405|pid:none) Gallus gallus mRNA for hypothetica...   301   1e-80
BC073255_1(BC073255|pid:none) Xenopus laevis cDNA clone MGC:8060...   301   1e-80
BC135791_1(BC135791|pid:none) Xenopus tropicalis TGF beta-induci...   301   1e-80
BT079029_1(BT079029|pid:none) Esox lucius clone eluc-evq-531-126...   301   1e-80
BT043757_1(BT043757|pid:none) Salmo salar clone HM6_1028 TGF bet...   300   2e-80
DQ213395_1(DQ213395|pid:none) Taeniopygia guttata clone 0064P000...   299   5e-80
BT048070_1(BT048070|pid:none) Salmo salar clone ssal-eve-557-308...   299   5e-80
BT047823_1(BT047823|pid:none) Salmo salar clone ssal-eve-568-143...   299   5e-80
BC046083_1(BC046083|pid:none) Danio rerio zgc:56334, mRNA (cDNA ...   298   7e-80
(Q9QYU7) RecName: Full=Ribosome biogenesis protein NSA2 homolog;...   298   1e-79
AK017605_1(AK017605|pid:none) Mus musculus 8 days embryo whole b...   297   2e-79
CP001330_347(CP001330|pid:none) Micromonas sp. RCC299 chromosome...   296   3e-79
CP000596_243(CP000596|pid:none) Ostreococcus lucimarinus CCE9901...   294   1e-78
DQ424947_1(DQ424947|pid:none) Bombyx mori TGF beta-inducible nuc...   292   5e-78
BT033374_1(BT033374|pid:none) Zea mays full-length cDNA clone ZM...   292   6e-78
CR940352_777(CR940352|pid:none) Theileria annulata strain Ankara...   291   8e-78
AB006700_12(AB006700|pid:none) Arabidopsis thaliana genomic DNA,...   290   2e-77
AY826168_1(AY826168|pid:none) Aedes albopictus clone AL_421 hair...   290   2e-77
AF275672_1(AF275672|pid:none) Aedes triseriatus clone ATE-001 un...   290   2e-77
EF070567_1(EF070567|pid:none) Maconellicoccus hirsutus clone WHM...   287   2e-76
AK060100_1(AK060100|pid:none) Oryza sativa Japonica Group cDNA c...   283   2e-75
AL032650_4(AL032650|pid:none) Caenorhabditis elegans YAC Y6B3A, ...   276   4e-73
FN318158_1(FN318158|pid:none) Schistosoma japonicum isolate Anhu...   275   1e-72
FN314077_1(FN314077|pid:none) Schistosoma japonicum isolate Anhu...   275   1e-72
CT005272_662(CT005272|pid:none) Leishmania major strain Friedlin...   268   8e-71
AM494972_674(AM494972|pid:none) Leishmania braziliensis chromoso...   267   2e-70
BT078534_1(BT078534|pid:none) Lepeophtheirus salmonis clone lsal...   266   5e-70
(Q5K7T7) RecName: Full=Ribosome biogenesis protein NSA2;  &AE017...   263   3e-69
CU928179_790(CU928179|pid:none) Zygosaccharomyces rouxii strain ...   261   2e-68
(Q9UU79) RecName: Full=Ribosome biogenesis protein nsa2;  &AL117...   258   8e-68
AM910983_59(AM910983|pid:none) Plasmodium knowlesi strain H chro...   258   1e-67
(Q0UV95) RecName: Full=Ribosome biogenesis protein NSA2;              258   1e-67
(A6S4J2) RecName: Full=Ribosome biogenesis protein nsa2;              256   5e-67
(A7TIZ1) RecName: Full=Ribosome biogenesis protein NSA2;              255   9e-67
(Q6CNC5) RecName: Full=Ribosome biogenesis protein NSA2;  &CR382...   254   1e-66
AL844506_82(AL844506|pid:none) Plasmodium falciparum 3D7 chromos...   254   1e-66
(Q6C6D1) RecName: Full=Ribosome biogenesis protein NSA2;  &CR382...   254   2e-66
(Q6FN72) RecName: Full=Ribosome biogenesis protein NSA2;  &CR380...   253   3e-66
(A6ZR80) RecName: Full=Ribosome biogenesis protein NSA2; AltName...   253   4e-66
CU928169_283(CU928169|pid:none) Kluyveromyces thermotolerans str...   251   1e-65
(A3LQ06) RecName: Full=Ribosome biogenesis protein NSA2;  &CP000...   251   2e-65
(Q6BU14) RecName: Full=Ribosome biogenesis protein NSA2;  &CR382...   251   2e-65
FM992690_573(FM992690|pid:none) Candida dubliniensis CD36 chromo...   250   2e-65
(Q5A2Y7) RecName: Full=Ribosome biogenesis protein NSA2;              250   3e-65
(A1CJS8) RecName: Full=Ribosome biogenesis protein nsa2;              248   1e-64
AM920435_650(AM920435|pid:none) Penicillium chrysogenum Wisconsi...   248   1e-64
CU633899_241(CU633899|pid:none) Podospora anserina genomic DNA c...   248   1e-64
AP007151_1264(AP007151|pid:none) Aspergillus oryzae RIB40 genomi...   247   2e-64
AY811809_1(AY811809|pid:none) Schistosoma japonicum SJCHGC06987 ...   246   4e-64
AL590450_81(AL590450|pid:none) chromosome XI of strain GB-M1 of ...   233   3e-60
AM260497_1(AM260497|pid:none) Platanus acerifolia partial mRNA f...   197   2e-49
BT050628_1(BT050628|pid:none) Medicago truncatula clone MTYF5_F6...   162   1e-38
AY231657_1(AY231657|pid:none) Drosophila yakuba clone yak-em_Ip2...   139   5e-32
AY818401_1(AY818401|pid:none) Aspergillus fumigatus 66S pre-ribo...   117   2e-25
Y17325_1(Y17325|pid:none) Rattus norvegicus CDK105 mRNA.               97   4e-19
AX885115_1(AX885115|pid:none) Sequence 978 from Patent EP1033401.      89   1e-16
AY438655_1(AY438655|pid:none) Quercus robur TGF-beta inducible p...    50   7e-05
AE017261_984(AE017261|pid:none) Picrophilus torridus DSM 9790, c...    49   1e-04
(A2BK08) RecName: Full=30S ribosomal protein S8e;  &CP000493_438...    47   5e-04
(Q0W1L5) RecName: Full=30S ribosomal protein S8e;  &AM114193_529...    47   6e-04
(Q4JAP5) RecName: Full=30S ribosomal protein S8e;  &CP000077_704...    46   0.001
(Q8TV55) RecName: Full=30S ribosomal protein S8e;  &AE009439_154...    44   0.004
(Q976K3) RecName: Full=30S ribosomal protein S8e;  &BA000023_203...    43   0.007
(O28130) RecName: Full=30S ribosomal protein S8e;  &AE000782_212...    43   0.009
AY714830_27(AY714830|pid:none) Uncultured archaeon GZfos19C7 clo...    42   0.015
AY714873_32(AY714873|pid:none) Uncultured archaeon GZfos9E5 clon...    42   0.015
(A5UNB3) RecName: Full=30S ribosomal protein S8e;  &CP000678_148...    42   0.015
CR936257_2387(CR936257|pid:none) Natronomonas pharaonis DSM 2160...    41   0.033
GM016639_205(GM016639|pid:none) Sequence 1469 from Patent EP1923...    41   0.033
(A3CSQ2) RecName: Full=30S ribosomal protein S8e;  &CP000562_467...    41   0.033
(Q5JGF3) RecName: Full=30S ribosomal protein S8e;  &AP006878_119...    41   0.033
(P61301) RecName: Full=30S ribosomal protein S8e;  &AE017199_457...    40   0.074
(B1Y9T9) RecName: Full=30S ribosomal protein S8e;  &CP001014_153...    40   0.074
(A3DNX9) RecName: Full=30S ribosomal protein S8e;  &CP000575_122...    39   0.097
(O58830) RecName: Full=30S ribosomal protein S8e;  &BA000001_113...    39   0.13
(Q8U1Y5) RecName: Full=30S ribosomal protein S8e;  &AE009950_106...    39   0.17
(Q9UZL4) RecName: Full=30S ribosomal protein S8e;  &AJ248286_189...    39   0.17
(P49402) RecName: Full=30S ribosomal protein S8e; AltName: Full=...    38   0.22
(A4WLM9) RecName: Full=30S ribosomal protein S8e;  &CP000660_167...    38   0.22
(A1RS21) RecName: Full=30S ribosomal protein S8e;  &CP000504_569...    38   0.28
(A0B8P7) RecName: Full=30S ribosomal protein S8e;  &CP000477_126...    37   0.48
(Q8TS82) RecName: Full=30S ribosomal protein S8e;  &AE010299_902...    37   0.48
AM428299_3(AM428299|pid:none) Vitis vinifera contig VV79X003679....    37   0.48
(Q12UA1) RecName: Full=30S ribosomal protein S8e;  &CP000300_195...    37   0.63
(A8AAJ7) RecName: Full=30S ribosomal protein S8e;  &CP000816_765...    36   0.82
(Q2FU12) RecName: Full=30S ribosomal protein S8e;  &CP000254_240...    36   0.82
CP000852_1599(CP000852|pid:none) Caldivirga maquilingensis IC-16...    36   1.1
(B6YTF2) RecName: Full=30S ribosomal protein S8e;  &CP000855_356...    36   1.1
CP000866_516(CP000866|pid:none) Nitrosopumilus maritimus SCM1, c...    35   1.8
(A6VHS1) RecName: Full=30S ribosomal protein S8e;  &CP000745_924...    35   2.4
(A9A907) RecName: Full=30S ribosomal protein S8e;  &CP000867_100...    35   2.4
(Q9YDY0) RecName: Full=30S ribosomal protein S8e;  &BA000002_552...    34   3.1
(P61300) RecName: Full=30S ribosomal protein S8e;  &BX950229_165...    34   3.1
(A4G0R4) RecName: Full=30S ribosomal protein S8e;  &CP000609_173...    34   4.1
(Q465V4) RecName: Full=30S ribosomal protein S8e;  &CP000099_334...    34   4.1
CP001365_1939(CP001365|pid:none) Halorubrum lacusprofundi ATCC 4...    33   7.0
AC005312_4(AC005312|pid:none) Arabidopsis thaliana chromosome 2 ...    33   7.0
(Q8U445) RecName: Full=Uncharacterized HTH-type transcriptional ...    33   9.1
AE009950_250(AE009950|pid:none) Pyrococcus furiosus DSM 3638, co...    33   9.1
CP001399_1975(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,...    33   9.1

>(Q54GN8) RecName: Full=Ribosome biogenesis protein NSA2 homolog;
          Length = 260

 Score =  353 bits (905), Expect = 3e-96
 Identities = 175/175 (100%), Positives = 175/175 (100%)
 Frame = +3

Query: 3   VPAYLLDREGVSRAKVLSNMVKQKRKEKAGKWDVPLPKVRAISEDEMFKVVKSGKRQKKA 182
           VPAYLLDREGVSRAKVLSNMVKQKRKEKAGKWDVPLPKVRAISEDEMFKVVKSGKRQKKA
Sbjct: 86  VPAYLLDREGVSRAKVLSNMVKQKRKEKAGKWDVPLPKVRAISEDEMFKVVKSGKRQKKA 145

Query: 183 WKRFVTKVTFVGEGFTRKPPKYERFIRPTGLRFKKAHVTHPELKSTFYLDILSVKKNPQS 362
           WKRFVTKVTFVGEGFTRKPPKYERFIRPTGLRFKKAHVTHPELKSTFYLDILSVKKNPQS
Sbjct: 146 WKRFVTKVTFVGEGFTRKPPKYERFIRPTGLRFKKAHVTHPELKSTFYLDILSVKKNPQS 205

Query: 363 PTYTQLGVITKGTILEVNVSDLGLVTQTGKVVWGKMAQVTNNPENDGCINAVLLV 527
           PTYTQLGVITKGTILEVNVSDLGLVTQTGKVVWGKMAQVTNNPENDGCINAVLLV
Sbjct: 206 PTYTQLGVITKGTILEVNVSDLGLVTQTGKVVWGKMAQVTNNPENDGCINAVLLV 260

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 910,298,539
Number of extensions: 17917527
Number of successful extensions: 44391
Number of sequences better than 10.0: 108
Number of HSP's gapped: 44340
Number of HSP's successfully gapped: 108
Length of query: 214
Length of database: 1,040,966,779
Length adjustment: 123
Effective length of query: 91
Effective length of database: 646,839,724
Effective search space: 58862414884
Effective search space used: 58862414884
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.75  gvh: 0.43  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U06617-1 is cyt
VS (DIR, S) 2
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0