| Contig-U06590-1 |
| Contig ID |
Contig-U06590-1 |
| Contig update |
2001. 8.30 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
652 |
| Chromosome number (1..6, M) |
5 |
| Chromosome length |
5062330 |
| Start point |
2184060 |
| End point |
2184712 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
4 |
| Number of EST |
4 |
| Link to clone list |
U06590 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11. 9 |
| Homology vs DNA |
Query= Contig-U06590-1 (Contig-U06590-1Q) /CSM_Contig/Contig-U06590-1Q.Seq.d
(652 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AU266330) Dictyostelium discoideum vegetative cDNA clone:VS... 1150 0.0 1
(AU268050) Dictyostelium discoideum vegetative cDNA clone:VS... 1148 0.0 1
(AU263138) Dictyostelium discoideum vegetative cDNA clone:VS... 1063 0.0 1
(AU264452) Dictyostelium discoideum vegetative cDNA clone:VS... 773 0.0 1
(CP000382) Clostridium novyi NT, complete genome. 44 0.009 16
(EK581048) 1095521697034 Global-Ocean-Sampling_GS-32-01-01-1... 32 0.19 4
(CC633264) OGJBI78TV ZM_0.7_1.5_KB Zea mays genomic clone ZM... 40 0.24 2
(CR388139) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 36 0.34 8
(EI605178) Wang-VSVGgfp-Jurkat-454-Mse-029424_3454_0710 Wang... 48 0.40 1
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 30 0.45 17
(BX530409) Zebrafish DNA sequence from clone DKEY-69K9 in li... 32 0.82 2
(AC130425) Homo sapiens chromosome 3 clone RP11-33A1, *** SE... 34 0.96 6
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1... 34 1.1 10
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6... 34 1.3 6
(CU633962) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 1.3 5
(AC183438) Bos taurus clone CH240-429E2, WORKING DRAFT SEQUE... 44 1.3 4
(AC180769) Strongylocentrotus purpuratus clone R3-3073M15, W... 46 1.6 1
(AC177966) Strongylocentrotus purpuratus clone R3-3049K2, WO... 46 1.6 1
(BH138106) ENTOU42TR Entamoeba histolytica Sheared DNA Entam... 46 1.6 1
(EJ851316) 1093017888529 Global-Ocean-Sampling_GS-30-02-01-1... 46 1.6 1
(EJ839411) 1093017819992 Global-Ocean-Sampling_GS-30-02-01-1... 46 1.6 1
(DU135344) Mde5i24_T7 Hessian Fly Mde BAC Library Mayetiola ... 46 1.6 1
(AM285311) Spiroplasma citri GII3-3X chromosome, contig Cont... 34 2.1 5
(D82024) Dictyostelium discoideum topA gene for DNA topoisom... 38 2.2 4
(AC212603) Macaca mulatta BAC CH250-74J22 (Children's Hospi... 40 2.4 4
(BX168906) Danio rerio genomic clone DKEY-171K14, genomic su... 36 2.8 2
(BX200581) Danio rerio genomic clone DKEY-208B18, genomic su... 36 2.8 2
(EJ590219) 1092961045252 Global-Ocean-Sampling_GS-29-01-01-1... 40 3.3 2
(ER337158) 1092344317338 Global-Ocean-Sampling_GS-34-01-01-1... 36 3.4 2
(CZ961062) 307091 Tomato EcoRI BAC Library Solanum lycopersi... 40 3.5 2
(EJ118912) 1092343364661 Global-Ocean-Sampling_GS-27-01-01-1... 38 3.6 2
(AC007770) Drosophila melanogaster, chromosome 3R, region 86... 34 3.7 7
(EJ570170) 1092960031664 Global-Ocean-Sampling_GS-29-01-01-1... 40 3.7 2
(AC083977) Homo sapiens chromosome 8, clone RP11-317J8, comp... 42 3.7 4
(EE618416) CHWM5734.b1_L18.ab1 CHW(LMS) silverleaf sunflower... 34 4.1 2
(EB265894) MCCN20-F-133114-501 Normalized MCC Neurons Aplysi... 32 4.1 2
(AW850214) IL3-CT0219-281099-024-H06 CT0219 Homo sapiens cDN... 34 4.2 2
(AE014852) Plasmodium falciparum 3D7 chromosome 12, section ... 34 4.3 6
(AE017308) Mycoplasma mobile 163K complete genome. 34 4.8 14
(AC184178) Strongylocentrotus purpuratus clone R3-6J11, WORK... 34 5.1 6
(AC004153) Plasmodium falciparum chromosome 12 clone 3D7, **... 38 5.5 6
(AP001305) Arabidopsis thaliana genomic DNA, chromosome 3, P... 40 5.6 4
(AC124951) Medicago truncatula chromosome 6 clone mth2-7p23,... 36 6.0 5
(AC161528) Mus musculus chromosome 8, clone RP23-369H18, com... 44 6.2 1
(AC102381) Mus musculus chromosome 8, clone RP24-180I19, com... 44 6.2 1
(EF577389) Pichia pastoris Apl2p-like protein (APL2) gene, p... 44 6.2 1
(AC157537) Medicago truncatula clone mth2-124a3, complete se... 44 6.2 1
(AC152551) Medicago truncatula clone mth2-24d6, complete seq... 44 6.2 1
(CQ869730) Sequence 151 from Patent WO2004074320. 44 6.2 1
(CQ587933) Sequence 15691 from Patent WO0171042. 44 6.2 1
(AE014134) Drosophila melanogaster chromosome 2L, complete s... 44 6.2 1
(AC093096) Drosophila melanogaster, chromosome 2L, region 35... 44 6.2 1
(AC092229) Drosophila melanogaster clone BACR23I04, complete... 44 6.2 1
(AC009202) Drosophila melanogaster, chromosome 2L, region 36... 44 6.2 1
(AC105922) Homo sapiens BAC clone RP11-548K13 from 2, comple... 44 6.2 1
(AC023051) Homo sapiens 12 BAC RP11-666F17 (Roswell Park Can... 44 6.2 1
(AC161067) Bos taurus clone CH240-96C11, WORKING DRAFT SEQUE... 44 6.2 1
(AC160485) Bos taurus clone CH240-89C17, WORKING DRAFT SEQUE... 44 6.2 1
(AC155663) Bos taurus clone CH240-38C16, WORKING DRAFT SEQUE... 44 6.2 1
(AC141906) Rattus norvegicus clone CH230-406C3, WORKING DRAF... 44 6.2 1
(AC130182) Rattus norvegicus clone CH230-3L20, *** SEQUENCIN... 44 6.2 1
(AC112878) Rattus norvegicus clone CH230-369I16, WORKING DRA... 44 6.2 1
(AC112712) Homo sapiens chromosome 2 clone RP11-16B6, WORKIN... 44 6.2 1
(AC230933) Bos taurus clone CH240-496A13, WORKING DRAFT SEQU... 44 6.2 1
(AC221180) Bos taurus clone CH240-396F16, WORKING DRAFT SEQU... 44 6.2 1
(AC218694) Bos taurus clone CH240-296M20, WORKING DRAFT SEQU... 44 6.2 1
(AC204494) Macaca mulatta clone CH250-79D4, WORKING DRAFT SE... 44 6.2 1
(AC182139) Bos taurus clone CH240-331F14, WORKING DRAFT SEQU... 44 6.2 1
(AC166811) Bos taurus clone CH240-180D21, WORKING DRAFT SEQU... 44 6.2 1
(AC020099) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 44 6.2 1
(AC018393) Homo sapiens clone RP11-13K14, WORKING DRAFT SEQU... 44 6.2 1
(AC018021) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 44 6.2 1
(AC011064) Drosophila melanogaster strain y chromosome X clo... 44 6.2 1
(ER607482) 1093016285966 Global-Ocean-Sampling_GS-36-01-01-2... 44 6.2 1
(ER392609) 1095335026626 Global-Ocean-Sampling_GS-34-01-01-1... 44 6.2 1
(ER353718) 1092347072351 Global-Ocean-Sampling_GS-34-01-01-1... 44 6.2 1
(ER330280) 1092344249333 Global-Ocean-Sampling_GS-34-01-01-1... 44 6.2 1
(EK491904) 1095505093183 Global-Ocean-Sampling_GS-32-01-01-1... 44 6.2 1
(EJ995621) 1093023086017 Global-Ocean-Sampling_GS-30-02-01-1... 44 6.2 1
(EJ987116) 1093023019009 Global-Ocean-Sampling_GS-30-02-01-1... 44 6.2 1
(EJ912209) 1093018542710 Global-Ocean-Sampling_GS-30-02-01-1... 44 6.2 1
(EJ803472) 1093017442554 Global-Ocean-Sampling_GS-30-02-01-1... 44 6.2 1
(EJ709412) 1092956067683 Global-Ocean-Sampling_GS-30-02-01-1... 44 6.2 1
(EJ658365) 1092955014405 Global-Ocean-Sampling_GS-30-02-01-1... 44 6.2 1
(EJ607457) 1092962018263 Global-Ocean-Sampling_GS-29-01-01-1... 44 6.2 1
(EJ572869) 1092960062576 Global-Ocean-Sampling_GS-29-01-01-1... 44 6.2 1
(EJ539021) 1092955345949 Global-Ocean-Sampling_GS-29-01-01-1... 44 6.2 1
(EJ423040) 1093012242447 Global-Ocean-Sampling_GS-28-01-01-1... 44 6.2 1
(EJ292586) 1095386012077 Global-Ocean-Sampling_GS-27-01-01-1... 44 6.2 1
(EJ207146) 1092344362200 Global-Ocean-Sampling_GS-27-01-01-1... 44 6.2 1
(EJ132712) 1092343573290 Global-Ocean-Sampling_GS-27-01-01-1... 44 6.2 1
(EJ110294) 1092343152298 Global-Ocean-Sampling_GS-27-01-01-1... 44 6.2 1
(DU553745) OO__Ba0032K21.f OO__Ba Oryza officinalis genomic ... 44 6.2 1
(DU495407) 1098415935323 CHORI-243 Ovis aries genomic clone ... 44 6.2 1
(AL283270) Tetraodon nigroviridis genome survey sequence PUC... 44 6.2 1
(DE565073) Bombyx mori genomic DNA, Fosmid clone:GBMFno207_p... 44 6.2 1
(DE489124) Bombyx mori genomic DNA, Fosmid clone:GBMFno96_a1... 44 6.2 1
(DE485430) Bombyx mori genomic DNA, Fosmid clone:GBMFno91_a0... 44 6.2 1
(CZ773676) OC__Ba0131P24.r OC__Ba Oryza coarctata genomic cl... 44 6.2 1
(CZ585073) OA_BBa0176O21.f OA_BBa Oryza alta genomic clone O... 44 6.2 1
>(AU266330) Dictyostelium discoideum vegetative cDNA clone:VSG338,
3' end single read.
Length = 596
Score = 1150 bits (580), Expect = 0.0
Identities = 580/580 (100%)
Strand = Plus / Plus
Query: 1 caacaaatgttgcaactaaaactaaagtttatgaattaaaaacatataatattttagcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caacaaatgttgcaactaaaactaaagtttatgaattaaaaacatataatattttagcaa 60
Query: 61 ataatattccatcattttttgaattattaggagaaaataaaggttcaaatagtttaggta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ataatattccatcattttttgaattattaggagaaaataaaggttcaaatagtttaggta 120
Query: 121 cttgggtaactgaaatgggtagttcaaatcaagttattagtttagttgaacatgaaagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cttgggtaactgaaatgggtagttcaaatcaagttattagtttagttgaacatgaaagtt 180
Query: 181 tagatgacagacaaatgaatgaatggaatactaaatttcaatcaaaagcagctaaattaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tagatgacagacaaatgaatgaatggaatactaaatttcaatcaaaagcagctaaattaa 240
Query: 241 ttgaaaaacaagaatcattaattcttagagaattcccatgggcaccatttcaaaagattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttgaaaaacaagaatcattaattcttagagaattcccatgggcaccatttcaaaagattt 300
Query: 301 ccaatgaaaaatcaaatgaaaataaagtttgggaattaagaacttatcaatccaaaccag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccaatgaaaaatcaaatgaaaataaagtttgggaattaagaacttatcaatccaaaccag 360
Query: 361 gtaaattaggtcaatgggccatcgattttacaacaggtttcgctgaaagaaagaaaatct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtaaattaggtcaatgggccatcgattttacaacaggtttcgctgaaagaaagaaaatct 420
Query: 421 ctgaaccagttggtgttttctatagtgaattcggtcctttaaatacaatcgttcatttat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctgaaccagttggtgttttctatagtgaattcggtcctttaaatacaatcgttcatttat 480
Query: 481 ggccatataaaagttttgaagatagatttagaattagagatttagctttaaaaaatccag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ggccatataaaagttttgaagatagatttagaattagagatttagctttaaaaaatccag 540
Query: 541 tttgggttgaaactgttgctaaaacaactgcaaatttaga 580
||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tttgggttgaaactgttgctaaaacaactgcaaatttaga 580
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 842,348,312
Number of extensions: 55687396
Number of successful extensions: 4999575
Number of sequences better than 10.0: 134
Length of query: 652
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 629
Effective length of database: 93,106,754,628
Effective search space: 58564148661012
Effective search space used: 58564148661012
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 6.22 |
| Homology vs Protein |
Query= Contig-U06590-1 (Contig-U06590-1Q) /CSM_Contig/Contig-U06590-1Q.Seq.d
(652 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM920435_310(AM920435|pid:none) Penicillium chrysogenum Wisconsi... 94 3e-18
AP007167_282(AP007167|pid:none) Aspergillus oryzae RIB40 genomic... 93 6e-18
CU633872_291(CU633872|pid:none) Podospora anserina genomic DNA c... 91 3e-17
AJ720622_1(AJ720622|pid:none) Gallus gallus mRNA for hypothetica... 87 3e-16
AM270250_5(AM270250|pid:none) Aspergillus niger contig An11c0330... 86 7e-16
AE017348_64(AE017348|pid:none) Cryptococcus neoformans var. neof... 86 7e-16
DQ311201_1(DQ311201|pid:none) Bombyx mori NIPSNAP protein mRNA, ... 86 1e-15
BC089879_1(BC089879|pid:none) Rattus norvegicus 4-nitrophenylpho... 84 4e-15
(O55125) RecName: Full=Protein NipSnap homolog 1; Short... 84 5e-15
BC049027_1(BC049027|pid:none) Danio rerio zgc:56466, mRNA (cDNA ... 83 8e-15
BT049888_1(BT049888|pid:none) Salmo salar clone ssal-sjb-018-003... 82 1e-14
BC119913_1(BC119913|pid:none) Bos taurus nipsnap homolog 1 (C. e... 82 1e-14
EU016639_34(EU016639|pid:none) Uncultured marine microorganism H... 82 2e-14
DQ213244_1(DQ213244|pid:none) Taeniopygia guttata clone 0061P000... 81 2e-14
(Q9BPW8) RecName: Full=Protein NipSnap homolog 1; Short... 81 2e-14
AK290953_1(AK290953|pid:none) Homo sapiens cDNA FLJ78131 complet... 81 3e-14
BC171021_1(BC171021|pid:none) Xenopus tropicalis nipsnap homolog... 80 4e-14
BC086385_1(BC086385|pid:none) Rattus norvegicus glioblastoma amp... 80 4e-14
AK170336_1(AK170336|pid:none) Mus musculus NOD-derived CD11c +ve... 80 5e-14
CR382130_1015(CR382130|pid:none) Yarrowia lipolytica strain CLIB... 80 7e-14
L14710_1(L14710|pid:none) Caenorhabditis elegans cosmid K02D10, ... 79 9e-14
(P34492) RecName: Full=Putative NipSnap protein K02D10.1; &L147... 79 9e-14
BC104622_1(BC104622|pid:none) Bos taurus glioblastoma amplified ... 79 9e-14
AJ001262_1(AJ001262|pid:none) Caenorhabditis elegans mRNA for NI... 79 9e-14
BT081009_1(BT081009|pid:none) Caligus clemensi clone ccle-evs-50... 79 1e-13
(O55126) RecName: Full=Protein NipSnap homolog 2; Short... 79 1e-13
AY892293_1(AY892293|pid:none) Synthetic construct Homo sapiens c... 78 2e-13
AJ001259_1(AJ001259|pid:none) Homo sapiens mRNA for NIPSNAP2 pro... 78 2e-13
BC154968_1(BC154968|pid:none) Xenopus laevis hypothetical protei... 77 4e-13
EU711269_1(EU711269|pid:none) Caenorhabditis brenneri clone 12C1... 76 1e-12
BC075217_1(BC075217|pid:none) Xenopus laevis MGC84322 protein, m... 76 1e-12
BC122249_1(BC122249|pid:none) Danio rerio nipsnap1, mRNA (cDNA c... 75 2e-12
AJ249796_1(AJ249796|pid:none) Danio rerio partial mRNA for NIPSN... 75 2e-12
AJ249797_1(AJ249797|pid:none) Danio rerio partial mRNA for NIPSN... 75 2e-12
BT080827_1(BT080827|pid:none) Caligus clemensi clone ccle-evs-50... 74 4e-12
BC060436_1(BC060436|pid:none) Xenopus laevis hypothetical protei... 74 4e-12
AK147786_1(AK147786|pid:none) Mus musculus melanocyte cDNA, RIKE... 74 5e-12
(Q9UFN0) RecName: Full=Protein NipSnap homolog 3A; Shor... 71 2e-11
(Q5RAA9) RecName: Full=Protein NipSnap homolog 3A; Shor... 71 2e-11
S44837(S44837)K02D10.1 protein - Caenorhabditis elegans 70 7e-11
AF161417_1(AF161417|pid:none) Homo sapiens HSPC299 mRNA, partial... 69 9e-11
(Q9CQE1) RecName: Full=Protein NipSnap homolog 3A; Shor... 69 2e-10
BC087643_1(BC087643|pid:none) Rattus norvegicus nipsnap homolog ... 66 8e-10
FN318477_1(FN318477|pid:none) Schistosoma japonicum isolate Anhu... 65 2e-09
AK301410_1(AK301410|pid:none) Homo sapiens cDNA FLJ58863 complet... 65 2e-09
BX571965_1662(BX571965|pid:none) Burkholderia pseudomallei strai... 64 4e-09
BT080268_1(BT080268|pid:none) Caligus clemensi clone ccle-evs-50... 64 5e-09
BT076605_1(BT076605|pid:none) Caligus rogercresseyi clone crog-e... 64 5e-09
CP000271_884(CP000271|pid:none) Burkholderia xenovorans LB400 ch... 61 2e-08
CP000884_41(CP000884|pid:none) Delftia acidovorans SPH-1, comple... 61 3e-08
CP001331_24(CP001331|pid:none) Micromonas sp. RCC299 chromosome ... 60 7e-08
CP001013_2413(CP001013|pid:none) Leptothrix cholodnii SP-6, comp... 59 2e-07
CP000740_1019(CP000740|pid:none) Sinorhizobium medicae WSM419 pl... 59 2e-07
CR954216_153(CR954216|pid:none) Ostreococcus tauri strain OTTH05... 58 3e-07
CP000390_2507(CP000390|pid:none) Mesorhizobium sp. BNC1, complet... 58 3e-07
CP000271_886(CP000271|pid:none) Burkholderia xenovorans LB400 ch... 57 5e-07
AY316746_139(AY316746|pid:none) Rhizobium sp. NGR234 megaplasmid... 57 6e-07
CP001192_1136(CP001192|pid:none) Rhizobium leguminosarum bv. tri... 54 4e-06
AM236084_249(AM236084|pid:none) Rhizobium leguminosarum bv. vici... 54 4e-06
CP000926_3195(CP000926|pid:none) Pseudomonas putida GB-1, comple... 54 5e-06
CP000390_2926(CP000390|pid:none) Mesorhizobium sp. BNC1, complet... 53 7e-06
CP000264_2268(CP000264|pid:none) Jannaschia sp. CCS1, complete g... 53 7e-06
CP000629_2119(CP000629|pid:none) Agrobacterium radiobacter K84 c... 53 9e-06
CP000529_2678(CP000529|pid:none) Polaromonas naphthalenivorans C... 52 1e-05
AE015451_2580(AE015451|pid:none) Pseudomonas putida KT2440 compl... 52 1e-05
AB088420_191(AB088420|pid:none) Pseudomonas resinovorans plasmid... 51 3e-05
CT573213_389(CT573213|pid:none) Frankia alni str. ACN14A chromos... 50 4e-05
CP000144_169(CP000144|pid:none) Rhodobacter sphaeroides 2.4.1 ch... 50 4e-05
AX969421_1(AX969421|pid:none) Sequence 224 from Patent EP1104808. 50 6e-05
AP006725_1114(AP006725|pid:none) Klebsiella pneumoniae NTUH-K204... 50 7e-05
CP000270_840(CP000270|pid:none) Burkholderia xenovorans LB400 ch... 49 1e-04
CP000647_376(CP000647|pid:none) Klebsiella pneumoniae subsp. pne... 49 1e-04
DQ149577_31(DQ149577|pid:none) Paracoccus pantotrophus transposo... 49 2e-04
CP001504_73(CP001504|pid:none) Burkholderia glumae BGR1 chromoso... 48 3e-04
AL772397_8(AL772397|pid:none) Mouse DNA sequence from clone RP23... 47 5e-04
CP000390_412(CP000390|pid:none) Mesorhizobium sp. BNC1, complete... 47 5e-04
CP000781_2675(CP000781|pid:none) Xanthobacter autotrophicus Py2,... 47 6e-04
AC3187(AC3187) conserved hypothetical protein Atu5224 [imported]... 47 6e-04
CP000595_118(CP000595|pid:none) Ostreococcus lucimarinus CCE9901... 46 0.001
AK006782_1(AK006782|pid:none) Mus musculus adult male testis cDN... 44 0.004
BA000040_3671(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 44 0.004
CP000830_608(CP000830|pid:none) Dinoroseobacter shibae DFL 12, c... 43 0.009
CP001349_2629(CP001349|pid:none) Methylobacterium nodulans ORS 2... 42 0.015
CP000927_581(CP000927|pid:none) Caulobacter sp. K31, complete ge... 42 0.015
CP000529_2686(CP000529|pid:none) Polaromonas naphthalenivorans C... 41 0.035
CP001157_1971(CP001157|pid:none) Azotobacter vinelandii DJ, comp... 40 0.059
CP000271_2890(CP000271|pid:none) Burkholderia xenovorans LB400 c... 40 0.059
CP000152_2737(CP000152|pid:none) Burkholderia sp. 383 chromosome... 40 0.077
AJ249798_1(AJ249798|pid:none) Drosophila melanogaster partial mR... 40 0.077
CP001001_2125(CP001001|pid:none) Methylobacterium radiotolerans ... 39 0.10
CP000390_2276(CP000390|pid:none) Mesorhizobium sp. BNC1, complet... 39 0.13
CT005272_357(CT005272|pid:none) Leishmania major strain Friedlin... 38 0.22
CP000353_1865(CP000353|pid:none) Ralstonia metallidurans CH34 me... 35 1.9
CP000614_1155(CP000614|pid:none) Burkholderia vietnamiensis G4 c... 35 1.9
CP001013_1195(CP001013|pid:none) Leptothrix cholodnii SP-6, comp... 34 3.2
CP000227_3546(CP000227|pid:none) Bacillus cereus Q1, complete ge... 34 3.2
CP000001_3584(CP000001|pid:none) Bacillus cereus E33L, complete ... 34 3.2
CP001177_3727(CP001177|pid:none) Bacillus cereus AH187, complete... 34 3.2
AF064035_1(AF064035|pid:none) Clostridium pasteurianum pyruvate-... 34 4.2
AM902716_1669(AM902716|pid:none) Bordetella petrii strain DSM 12... 34 4.2
CP001186_3874(CP001186|pid:none) Bacillus cereus G9842, complete... 34 4.2
FN357504_13(FN357504|pid:none) Schistosoma mansoni genome sequen... 33 5.5
CP000382_1943(CP000382|pid:none) Clostridium novyi NT, complete ... 33 5.5
(Q57684) RecName: Full=Uncharacterized protein MJ0231; &H64328(... 33 7.2
CU633455_72(CU633455|pid:none) Podospora anserina genomic DNA ch... 33 7.2
AK295226_1(AK295226|pid:none) Homo sapiens cDNA FLJ60256 complet... 33 9.4
(O60486) RecName: Full=Plexin-C1; AltName: Full=Virus-encoded se... 33 9.4
CP000686_1270(CP000686|pid:none) Roseiflexus sp. RS-1, complete ... 33 9.4
AB208934_1(AB208934|pid:none) Homo sapiens mRNA for plexin C1 va... 33 9.4
AB269771_3(AB269771|pid:none) Escherichia coli ykfC, fllA, orf26... 33 9.4
(Q9QZC2) RecName: Full=Plexin-C1; AltName: Full=Virus-encoded se... 33 9.4
>AM920435_310(AM920435|pid:none) Penicillium chrysogenum Wisconsin
54-1255 complete genome, contig Pc00c20.
Length = 380
Score = 94.0 bits (232), Expect = 3e-18
Identities = 53/211 (25%), Positives = 106/211 (50%), Gaps = 16/211 (7%)
Frame = +3
Query: 27 VYELKTYNILANNIPSFFELLG---------ENKGSNSLGTWVTEMGSSNQVISLVE--- 170
V+ + +++ + + + +L+G E N +G+W T++G ++ + + E
Sbjct: 168 VHSIVMHDVKPDKVDEYVDLVGQWYPRMAGTEENRVNLVGSWRTQVGDNDTFVHIWEYQR 227
Query: 171 ----HESLDDRQMNEWNTKFQSKAAKLIEKQESLILREFPWAPFQKISNEKSNENKVWEL 338
H+SL + + +F K LI+ + + +++EF + P + ++EL
Sbjct: 228 YEGYHDSLHNISQHPEFREFDRKLKSLIKSKRTSLMQEFSFWP----TTPPRRLGGLFEL 283
Query: 339 RTYQSKPGKLGQWAIDFTTGFAERKKISEPVGVFYSEFGPLNTIVHLWPYKSFEDRFRIR 518
R+Y PG L +W + G R+++ E VG ++ + G LNT+ HLW + + E+R R
Sbjct: 284 RSYTLHPGNLLEWETHWRRGLTARREVMEGVGAWFVQIGELNTVHHLWQFANLEERKICR 343
Query: 519 DLALKNPVWVETVAKTTANLDSMESKTIIPV 611
+ + W ETV KT + SM+S+ ++P+
Sbjct: 344 EQSWGIEGWAETVHKTVPLIQSMQSRILVPM 374
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 823,195,951
Number of extensions: 14757648
Number of successful extensions: 40698
Number of sequences better than 10.0: 111
Number of HSP's gapped: 40615
Number of HSP's successfully gapped: 136
Length of query: 217
Length of database: 1,040,966,779
Length adjustment: 123
Effective length of query: 94
Effective length of database: 646,839,724
Effective search space: 60802934056
Effective search space used: 60802934056
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
|
| PSORT |
|
| VS (DIR, S) |
4 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |