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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U06588-1
Contig ID Contig-U06588-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U06588-1 (Contig-U06588-1Q) /CSM_Contig/Contig-U06588-1Q.Seq.d
CATCAATTGAATTAATGCAAAAAACCAAAGAGTCATTATCAGGTTTAGTT
TCNTTATCCTTGGGTATTTTCAATGGTCAACAATTATTAACCTCTGAAAA
GAAACAGGAATTATCTTCACCTCTTTTAAAAAATCTTGAATATCAATTAC
CAATGTTGGCTGATAAAAAACAAAGAGCAACTTATTTCATGAGTATTTGT
TGTTATTTAACTGACTCTGATCAAGAACAATATTATTTAAAAAATATTGA
AAAAATAACTAATGCTGGTTGTGAATCATTAGAAAAGAATGAATCAACAT
TTTTATTACGTGAGAATAAAGTTGTTGGATTATTTATAAGAGATAATGTT
GAAAAGATTATTGAATATTTGAATAGATTCATATTGGTAAATGGTGGTGG
TGGTGATGATGGCGTTGATGAAGAGGAAGGTGAGATTAATAGTGAATTCA
TTTCTGTTTTCCATTCAATTTTAAAGAATACCGATTCAAAATTATTCATT
GAAAAGTTTTATTCAATCTTGGTTGAATATTTAAATACATGGAAGGAGGA
ACATCTTACATTGGAGGAGACTCAAGGTTTATTTGAAATCTATCAATCAT
TACCATCCGTTGAGAGTAAAGAACAGTGTATCAAACTTTTATCATGCCAT
GAAAGAGCAATCTCGAATGATGTTATCTATTGTTTAGAAAGTGGTGATTT
GGATGATATCTTAACACCAATGGAATTCTATTTACAATTGATGACATTGG
CACCAAAAGAATGTCAACAACATTTCATGTTTTCCATTCAAAATCATCTT
TCCTCTTATTTCGTCATCTTGTTTGAGGATTCCAAAGAGGAGGGTCAATA
TGGTGGTCTTTACAATGACTATAAAGATTCTGACAAAGAAACTATCGATA
AACTCTTTGATCAATTCTTATTATTAAAATCTCAAACTTGTACAACTAAA
GACTCAAAGAGTTTATTCTTTAAAGAATTTGTTACTGTAGAAAGTAAATA
TTGTCCTCTTTTTAGAAAATATTTNNATTTAAATTAAATTAAAAAA
Gap no gap
Contig length 1046
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 5132287
End point 5131241
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U06588
List of clone(s) 

est1=VSD701E,1,1047
Translated Amino Acid sequence 
SIELMQKTKESLSGLVSLSLGIFNGQQLLTSEKKQELSSPLLKNLEYQLPMLADKKQRAT
YFMSICCYLTDSDQEQYYLKNIEKITNAGCESLEKNESTFLLRENKVVGLFIRDNVEKII
EYLNRFILVNGGGGDDGVDEEEGEINSEFISVFHSILKNTDSKLFIEKFYSILVEYLNTW
KEEHLTLEETQGLFEIYQSLPSVESKEQCIKLLSCHERAISNDVIYCLESGDLDDILTPM
EFYLQLMTLAPKECQQHFMFSIQNHLSSYFVILFEDSKEEGQYGGLYNDYKDSDKETIDK
LFDQFLLLKSQTCTTKDSKSLFFKEFVTVESKYCPLFRKYXXLN*ikk
Translated Amino Acid sequence (All Frames) 
Frame A:
hqln*ckkpkshyqv*fxypwvfsmvnny*plkrnrnylhlf*kilninyqcwliknkeq
lis*vfvvi*ltliknnii*kilkk*lmlvvnh*krmnqhfyyvriklldyl*eimlkrl
lni*idsyw*mvvvvmmalmkrkvrlivnsflfsiqf*ripiqnyslksfiqswlni*ih
grrnilhwrrlkvylksinhyhplrvknsvsnfyhamkeqsrmmlsiv*kvviwmis*hq
wnsiyn**hwhqknvnniscfpfkiifplisssclripkrrvnmvvftmtikiltkklsi
nslinsyy*nlklvqlktqrvyslknlll*kvnivlflenixi*iklk


Frame B:
in*inaknqrviirfsfxilgyfqwstiinl*ketgiiftsfkks*isitnvg**ktksn
lfheylllfn*l*srtilfkky*knn*cwl*iirke*inifit*e*scwiiykr*c*kdy
*ife*ihigkwwww**wr**rgr*d***ihfcfpfnfkeyrfkiih*kvlfnlg*ifkym
eggtsyiggdsrfi*nlsiitir*e*rtvyqtfimp*ksnle*cyllfrkw*fg*ylntn
gilftiddigtkrmsttfhvfhskssfllfrhlv*gfqrggsiwwslq*l*rf*qrnyr*
tl*siliikisnlyn*rlkefil*ricycrk*ilssf*kifxfkln*k


Frame C:
SIELMQKTKESLSGLVSLSLGIFNGQQLLTSEKKQELSSPLLKNLEYQLPMLADKKQRAT
YFMSICCYLTDSDQEQYYLKNIEKITNAGCESLEKNESTFLLRENKVVGLFIRDNVEKII
EYLNRFILVNGGGGDDGVDEEEGEINSEFISVFHSILKNTDSKLFIEKFYSILVEYLNTW
KEEHLTLEETQGLFEIYQSLPSVESKEQCIKLLSCHERAISNDVIYCLESGDLDDILTPM
EFYLQLMTLAPKECQQHFMFSIQNHLSSYFVILFEDSKEEGQYGGLYNDYKDSDKETIDK
LFDQFLLLKSQTCTTKDSKSLFFKEFVTVESKYCPLFRKYXXLN*ikk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06588-1 (Contig-U06588-1Q)
/CSM_Contig/Contig-U06588-1Q.Seq.d
         (1046 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06588-1 (Contig-U06588-1Q) /CSM_Contig/Conti...  2056  0.0
Contig-U06714-1 (Contig-U06714-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U11299-1 (Contig-U11299-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U11467-1 (Contig-U11467-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U09163-1 (Contig-U09163-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U02102-1 (Contig-U02102-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U01396-1 (Contig-U01396-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U11912-1 (Contig-U11912-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U10742-1 (Contig-U10742-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U05876-1 (Contig-U05876-1Q) /CSM_Contig/Conti...    34  0.29

>Contig-U06588-1 (Contig-U06588-1Q) /CSM_Contig/Contig-U06588-1Q.Seq.d
          Length = 1046

 Score = 2056 bits (1037), Expect = 0.0
 Identities = 1046/1046 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1    catcaattgaattaatgcaaaaaaccaaagagtcattatcaggtttagtttcnttatcct 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    catcaattgaattaatgcaaaaaaccaaagagtcattatcaggtttagtttcnttatcct 60

                                                                        
Query: 61   tgggtattttcaatggtcaacaattattaacctctgaaaagaaacaggaattatcttcac 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   tgggtattttcaatggtcaacaattattaacctctgaaaagaaacaggaattatcttcac 120

                                                                        
Query: 121  ctcttttaaaaaatcttgaatatcaattaccaatgttggctgataaaaaacaaagagcaa 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  ctcttttaaaaaatcttgaatatcaattaccaatgttggctgataaaaaacaaagagcaa 180

                                                                        
Query: 181  cttatttcatgagtatttgttgttatttaactgactctgatcaagaacaatattatttaa 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  cttatttcatgagtatttgttgttatttaactgactctgatcaagaacaatattatttaa 240

                                                                        
Query: 241  aaaatattgaaaaaataactaatgctggttgtgaatcattagaaaagaatgaatcaacat 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  aaaatattgaaaaaataactaatgctggttgtgaatcattagaaaagaatgaatcaacat 300

                                                                        
Query: 301  ttttattacgtgagaataaagttgttggattatttataagagataatgttgaaaagatta 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  ttttattacgtgagaataaagttgttggattatttataagagataatgttgaaaagatta 360

                                                                        
Query: 361  ttgaatatttgaatagattcatattggtaaatggtggtggtggtgatgatggcgttgatg 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  ttgaatatttgaatagattcatattggtaaatggtggtggtggtgatgatggcgttgatg 420

                                                                        
Query: 421  aagaggaaggtgagattaatagtgaattcatttctgttttccattcaattttaaagaata 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  aagaggaaggtgagattaatagtgaattcatttctgttttccattcaattttaaagaata 480

                                                                        
Query: 481  ccgattcaaaattattcattgaaaagttttattcaatcttggttgaatatttaaatacat 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  ccgattcaaaattattcattgaaaagttttattcaatcttggttgaatatttaaatacat 540

                                                                        
Query: 541  ggaaggaggaacatcttacattggaggagactcaaggtttatttgaaatctatcaatcat 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  ggaaggaggaacatcttacattggaggagactcaaggtttatttgaaatctatcaatcat 600

                                                                        
Query: 601  taccatccgttgagagtaaagaacagtgtatcaaacttttatcatgccatgaaagagcaa 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  taccatccgttgagagtaaagaacagtgtatcaaacttttatcatgccatgaaagagcaa 660

                                                                        
Query: 661  tctcgaatgatgttatctattgtttagaaagtggtgatttggatgatatcttaacaccaa 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  tctcgaatgatgttatctattgtttagaaagtggtgatttggatgatatcttaacaccaa 720

                                                                        
Query: 721  tggaattctatttacaattgatgacattggcaccaaaagaatgtcaacaacatttcatgt 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  tggaattctatttacaattgatgacattggcaccaaaagaatgtcaacaacatttcatgt 780

                                                                        
Query: 781  tttccattcaaaatcatctttcctcttatttcgtcatcttgtttgaggattccaaagagg 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  tttccattcaaaatcatctttcctcttatttcgtcatcttgtttgaggattccaaagagg 840

                                                                        
Query: 841  agggtcaatatggtggtctttacaatgactataaagattctgacaaagaaactatcgata 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  agggtcaatatggtggtctttacaatgactataaagattctgacaaagaaactatcgata 900

                                                                        
Query: 901  aactctttgatcaattcttattattaaaatctcaaacttgtacaactaaagactcaaaga 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  aactctttgatcaattcttattattaaaatctcaaacttgtacaactaaagactcaaaga 960

                                                                        
Query: 961  gtttattctttaaagaatttgttactgtagaaagtaaatattgtcctctttttagaaaat 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  gtttattctttaaagaatttgttactgtagaaagtaaatattgtcctctttttagaaaat 1020

                                      
Query: 1021 atttnnatttaaattaaattaaaaaa 1046
            ||||||||||||||||||||||||||
Sbjct: 1021 atttnnatttaaattaaattaaaaaa 1046


>Contig-U06714-1 (Contig-U06714-1Q) /CSM_Contig/Contig-U06714-1Q.Seq.d
          Length = 538

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 488 aaaattattcattgaaaagttt 509
           ||||||||||||||||||||||
Sbjct: 311 aaaattattcattgaaaagttt 332


>Contig-U11299-1 (Contig-U11299-1Q) /CSM_Contig/Contig-U11299-1Q.Seq.d
          Length = 2166

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 391 atggtggtggtggtgatgatg 411
           |||||||||||||||||||||
Sbjct: 69  atggtggtggtggtgatgatg 49


 Score = 32.2 bits (16), Expect = 1.2
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                               
Query: 392 tggtggtggtggtgatgatg 411
           ||||||||||| ||||||||
Sbjct: 65  tggtggtggtgatgatgatg 46


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,350
Number of Sequences: 6905
Number of extensions: 23350
Number of successful extensions: 3267
Number of sequences better than 10.0: 428
length of query: 1046
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1030
effective length of database: 5,564,391
effective search space: 5731322730
effective search space used: 5731322730
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11. 9
Homology vs DNA 
Query= Contig-U06588-1 (Contig-U06588-1Q) /CSM_Contig/Contig-U06588-1Q.Seq.d
         (1046 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU264425) Dictyostelium discoideum vegetative cDNA clone:VS...  1362   0.0    1
(AU264424) Dictyostelium discoideum vegetative cDNA clone:VS...   864   0.0    1
(AC179119) Strongylocentrotus purpuratus clone R3-4011I22, W...    42   6e-04  5
(AC152132) Dasypus novemcinctus clone VMRC5-198J6, WORKING D...    40   9e-04  6
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    38   0.003  13
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    36   0.005  13
(AC013268) Homo sapiens BAC clone RP11-322F4 from 2, complet...    52   0.007  5
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    42   0.008  13
(EY001289) CBAH2137.b1:P T. versicolor peonidin treated reve...    38   0.009  2
(EY001695) CBAH2345.b1:P T. versicolor peonidin treated reve...    38   0.009  2
(U40946) Caenorhabditis elegans cosmid W05H9, complete seque...    54   0.011  1
(AJ235271) Rickettsia prowazekii strain Madrid E, complete g...    38   0.013  12
(AC177562) Strongylocentrotus purpuratus clone R3-1026F13, W...    52   0.022  2
(AC027704) Homo sapiens chromosome 1 clone RP11-459O20 map 1...    52   0.022  5
(BG039561) NXSI_100_D11_F NXSI (Nsf Xylem Side wood Inclined...    44   0.023  2
(AC184531) Strongylocentrotus purpuratus clone R3-3110K19, W...    42   0.028  2
(DR386107) RTHG1_13_B02.b1_A029 Roots plus added mercury Pin...    44   0.031  2
(AC141284) Homo sapiens chromosome 16 clone RP11-349F11, WOR...    52   0.031  5
(CO173770) NDL1_39_D09.b1_A029 Needles control Pinus taeda c...    44   0.033  2
(DR050576) RTBOR1_24_H10.b1_A029 Roots plus added boron Pinu...    44   0.033  2
(CO173831) NDL1_39_D09.g1_A029 Needles control Pinus taeda c...    44   0.034  2
(FL641392) TS04-B2 Reticulitermes flavipes symbiont library ...    42   0.036  2
(CX650076) COLD1_43_H03.b1_A029 Root cold Pinus taeda cDNA c...    44   0.038  2
(CO364517) RTK1_16_D12.b1_A029 Roots minus potassium Pinus t...    44   0.039  2
(AL050344) Human DNA sequence from clone RP4-799D16 on chrom...    52   0.043  1
(AC140490) Homo sapiens BAC clone RP11-335A19 from 2, comple...    52   0.043  1
(AC140479) Homo sapiens BAC clone RP11-1223D19 from 2, compl...    52   0.043  1
(AC112229) Homo sapiens BAC clone RP13-1039J1 from 2, comple...    52   0.043  1
(AC132789) Rattus norvegicus clone CH230-268H24, WORKING DRA...    52   0.043  1
(AC128114) Rattus norvegicus clone CH230-413M22, WORKING DRA...    52   0.043  1
(CU469432) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    52   0.043  1
(CU469114) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    52   0.043  1
(AC176710) Strongylocentrotus purpuratus clone R3-3095B20, W...    52   0.043  1
(AC020990) Homo sapiens clone RP11-20N5, WORKING DRAFT SEQUE...    52   0.043  1
(AC011919) Homo sapiens clone RP11-14F19, WORKING DRAFT SEQU...    52   0.043  1
(CC132493) NDL.87M4.SP6 Notre Dame Liverpool Aedes aegypti g...    52   0.043  1
(CK259147) EST742784 potato callus cDNA library, normalized ...    52   0.043  1
(CK255336) EST738973 potato callus cDNA library, normalized ...    52   0.043  1
(CK248404) EST732041 potato callus cDNA library, normalized ...    52   0.043  1
(CK248121) EST731758 potato callus cDNA library, normalized ...    52   0.043  1
(CK247752) EST731389 potato callus cDNA library, normalized ...    52   0.043  1
(CK243204) EST726841 potato callus cDNA library, normalized ...    52   0.043  1
(CK243203) EST726840 potato callus cDNA library, normalized ...    52   0.043  1
(AW846056) PM4-CT0173-011099-002-A09 CT0173 Homo sapiens cDN...    52   0.043  1
(CF667822) RTCNT1_32_E12.g1_A029 Root control Pinus taeda cD...    44   0.044  2
(AC181693) Strongylocentrotus purpuratus clone R3-1036I2, WO...    40   0.044  3
(CU207254) Zebrafish DNA sequence from clone CH211-265I1.          34   0.045  7
(DR014511) HEAT1_50_A03.b1_A029 Root at 37 C for 24 hr Pinus...    44   0.045  2
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    34   0.057  12
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    36   0.059  12
(AC180440) Strongylocentrotus purpuratus clone R3-3102L05, W...    44   0.064  5
(AC073733) Mus musculus clone RP23-251J11, WORKING DRAFT SEQ...    42   0.086  3
(BX322651) Zebrafish DNA sequence from clone DKEYP-32G10 in ...    38   0.091  5
(AC095402) Rattus norvegicus 2 BAC CH230-7A22 (Children's Ho...    40   0.10   2
(AC125746) Rattus norvegicus clone CH230-137I10, *** SEQUENC...    46   0.12   5
(AC135319) Medicago truncatula clone mth2-6g4, complete sequ...    34   0.12   7
(CO732122) JBW031D09.b_073.abi Pineapple green mature fruit ...    40   0.13   2
(CO731264) JBW019E06.g_040.abi Pineapple green mature fruit ...    40   0.13   2
(AC180932) Strongylocentrotus purpuratus clone R3-3061I15, W...    44   0.14   9
(AP008213) Oryza sativa (japonica cultivar-group) genomic DN...    50   0.17   1
(AP003848) Oryza sativa Japonica Group genomic DNA, chromoso...    50   0.17   1
(AP003743) Oryza sativa Japonica Group genomic DNA, chromoso...    50   0.17   1
(AK121816) Oryza sativa Japonica Group cDNA clone:J033098K22...    50   0.17   1
(EA690653) Sequence 69532 from patent US 7365185.                  50   0.17   1
(AC094349) Rattus norvegicus clone CH230-3K8, WORKING DRAFT ...    50   0.17   1
(AC181214) Strongylocentrotus purpuratus clone R3-4008N7, WO...    50   0.17   1
(AC178846) Strongylocentrotus purpuratus clone R3-26F6, WORK...    50   0.17   1
(CL780760) OR_BBa0096E10.r OR_BBa Oryza nivara genomic clone...    50   0.17   1
(AM545905) Paracentrotus lividus EST, clone MPMGp1171G21214Q...    50   0.17   1
(AM515828) Paracentrotus lividus EST, clone MPMGp1171G0626Q,...    50   0.17   1
(CX119011) PANICD02 A normalized whole-life-cycle cDNA libra...    50   0.17   1
(CI616893) Oryza sativa Japonica Group cDNA, clone: J03B3098...    50   0.17   1
(CI611238) Oryza sativa Japonica Group cDNA, clone: J03B3057...    50   0.17   1
(CI606538) Oryza sativa Japonica Group cDNA, clone: J03B3025...    50   0.17   1
(CI119226) Oryza sativa Japonica Group cDNA, clone: 024-M020...    50   0.17   1
(BF296113) 031PbE02 Pb cDNA #17, Tommaso Pace, Marta Ponzi, ...    50   0.17   1
(AP003040) Homo sapiens genomic DNA, chromosome 11q clone:RP...    42   0.22   2
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    40   0.23   12
(CT573100) Mouse DNA sequence from clone RP23-218E7 on chrom...    42   0.28   7
(AC113767) Rattus norvegicus clone CH230-88H11, WORKING DRAF...    38   0.37   2
(AC123866) Mus musculus BAC clone RP23-124I3 from chromosome...    36   0.37   2
(AC113795) Rattus norvegicus clone CH230-253E4, WORKING DRAF...    38   0.37   2
(AC132578) Mus musculus BAC clone RP24-458M10 from 8, comple...    36   0.38   2
(AC142517) Rattus norvegicus clone CH230-unknown, *** SEQUEN...    38   0.39   2
(AC178686) Strongylocentrotus purpuratus clone R3-3006L04, W...    40   0.40   5
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    32   0.41   12
(AC176759) Strongylocentrotus purpuratus clone R3-3097N4, WO...    40   0.42   4
(AC179379) Strongylocentrotus purpuratus clone R3-1101M12, W...    44   0.44   5
(AC120939) Rattus norvegicus clone CH230-520D9, WORKING DRAF...    38   0.44   6
(CP000048) Borrelia hermsii DAH, complete genome.                  36   0.46   17
(EY000842) CBAH1897.g1:P T. versicolor peonidin treated reve...    36   0.49   2
(AC205300) Canis lupus familiaris clone XX-134O13, *** SEQUE...    44   0.50   2
(AC177244) Strongylocentrotus purpuratus clone R3-1034F15, W...    44   0.52   4
(BX546465) Mouse DNA sequence from clone RP23-167N13 on chro...    36   0.53   6
(BM159573) EST562096 PyBS Plasmodium yoelii yoelii cDNA clon...    44   0.53   2
(AL844509) Plasmodium falciparum chromosome 13.                    36   0.59   16
(AC141823) Apis mellifera clone CH224-62B18, WORKING DRAFT S...    40   0.59   7
(AQ740739) HS_5507_A2_G08_SP6 RPCI-11 Human Male BAC Library...    40   0.60   2
(AC099191) Rattus norvegicus clone CH230-167G23, WORKING DRA...    40   0.60   9
(AC181810) Strongylocentrotus purpuratus clone R3-1024L10, W...    44   0.63   8

>(AU264425) Dictyostelium discoideum vegetative cDNA clone:VSD701, 3'
            end single read.
          Length = 694

 Score = 1362 bits (687), Expect = 0.0
 Identities = 693/693 (100%)
 Strand = Plus / Plus


Query: 354  aagattattgaatatttgaatagattcatattggtaaatggtggtggtggtgatgatggc 413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    aagattattgaatatttgaatagattcatattggtaaatggtggtggtggtgatgatggc 60


Query: 414  gttgatgaagaggaaggtgagattaatagtgaattcatttctgttttccattcaatttta 473
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   gttgatgaagaggaaggtgagattaatagtgaattcatttctgttttccattcaatttta 120


Query: 474  aagaataccgattcaaaattattcattgaaaagttttattcaatcttggttgaatattta 533
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  aagaataccgattcaaaattattcattgaaaagttttattcaatcttggttgaatattta 180


Query: 534  aatacatggaaggaggaacatcttacattggaggagactcaaggtttatttgaaatctat 593
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  aatacatggaaggaggaacatcttacattggaggagactcaaggtttatttgaaatctat 240


Query: 594  caatcattaccatccgttgagagtaaagaacagtgtatcaaacttttatcatgccatgaa 653
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  caatcattaccatccgttgagagtaaagaacagtgtatcaaacttttatcatgccatgaa 300


Query: 654  agagcaatctcgaatgatgttatctattgtttagaaagtggtgatttggatgatatctta 713
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  agagcaatctcgaatgatgttatctattgtttagaaagtggtgatttggatgatatctta 360


Query: 714  acaccaatggaattctatttacaattgatgacattggcaccaaaagaatgtcaacaacat 773
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  acaccaatggaattctatttacaattgatgacattggcaccaaaagaatgtcaacaacat 420


Query: 774  ttcatgttttccattcaaaatcatctttcctcttatttcgtcatcttgtttgaggattcc 833
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  ttcatgttttccattcaaaatcatctttcctcttatttcgtcatcttgtttgaggattcc 480


Query: 834  aaagaggagggtcaatatggtggtctttacaatgactataaagattctgacaaagaaact 893
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  aaagaggagggtcaatatggtggtctttacaatgactataaagattctgacaaagaaact 540


Query: 894  atcgataaactctttgatcaattcttattattaaaatctcaaacttgtacaactaaagac 953
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  atcgataaactctttgatcaattcttattattaaaatctcaaacttgtacaactaaagac 600


Query: 954  tcaaagagtttattctttaaagaatttgttactgtagaaagtaaatattgtcctcttttt 1013
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  tcaaagagtttattctttaaagaatttgttactgtagaaagtaaatattgtcctcttttt 660


Query: 1014 agaaaatatttnnatttaaattaaattaaaaaa 1046
            |||||||||||||||||||||||||||||||||
Sbjct: 661  agaaaatatttnnatttaaattaaattaaaaaa 693

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,548,726,296
Number of extensions: 104932134
Number of successful extensions: 10122457
Number of sequences better than 10.0: 631
Length of query: 1046
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1022
Effective length of database: 97,308,875,965
Effective search space: 99449671236230
Effective search space used: 99449671236230
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.22
Homology vs Protein 
Query= Contig-U06588-1 (Contig-U06588-1Q) /CSM_Contig/Contig-U06588-1Q.Seq.d
         (1046 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC072830_1(BC072830|pid:none) Xenopus laevis MGC80186 protein, m...    40   0.10
BC129213_1(BC129213|pid:none) Danio rerio zgc:158370, mRNA (cDNA...    39   0.23
AE001439_1249(AE001439|pid:none) Helicobacter pylori J99, comple...    39   0.23
BC090584_1(BC090584|pid:none) Xenopus tropicalis hypothetical pr...    39   0.30
CP000361_729(CP000361|pid:none) Arcobacter butzleri RM4018, comp...    39   0.39
BC066382_1(BC066382|pid:none) Danio rerio zgc:56304, mRNA (cDNA ...    38   0.51
BC046059_1(BC046059|pid:none) Danio rerio zgc:56304, mRNA (cDNA ...    38   0.51
CP000806_2710(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    38   0.51
BC095583_1(BC095583|pid:none) Danio rerio zgc:56304, mRNA (cDNA ...    38   0.51
CP000263_2(CP000263|pid:none) Buchnera aphidicola str. Cc (Cinar...    38   0.67
BC076729_1(BC076729|pid:none) Xenopus laevis MGC81268 protein, m...    37   0.87
CT573072_714(CT573072|pid:none) Kuenenia stuttgartiensis genome ...    37   1.1
BC064172_1(BC064172|pid:none) Xenopus tropicalis GTPase activati...    37   1.1
BC065323_1(BC065323|pid:none) Danio rerio GTPase activating prot...    37   1.5
CP000472_3658(CP000472|pid:none) Shewanella piezotolerans WP3, c...    36   1.9
AJ719353_1(AJ719353|pid:none) Gallus gallus mRNA for hypothetica...    36   1.9
(A1A081) RecName: Full=50S ribosomal protein L5;  &AP009256_333(...    35   5.7
CP001173_1253(CP001173|pid:none) Helicobacter pylori G27, comple...    34   7.4
AC150566_3(AC150566|pid:none) Medicago truncatula clone mth2-21o...    34   7.4
FM992692_231(FM992692|pid:none) Candida dubliniensis CD36 chromo...    34   7.4
AE000511_1315(AE000511|pid:none) Helicobacter pylori 26695, comp...    34   7.4
CP001217_1290(CP001217|pid:none) Helicobacter pylori P12, comple...    34   9.6
(B0T2D4) RecName: Full=50S ribosomal protein L5;  &CP000927_1617...    34   9.6
CR932135_1(CR932135|pid:none) Paramecium tetraurelia macronuclea...    34   9.6

>BC072830_1(BC072830|pid:none) Xenopus laevis MGC80186 protein, mRNA
           (cDNA clone MGC:80186 IMAGE:4970622), complete cds.
          Length = 470

 Score = 40.4 bits (93), Expect = 0.10
 Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
 Frame = +3

Query: 435 INSEFISVFHSILKNTDSKLFIEKFYSILVEYLNTWKEEH-LTLEETQGLFEIYQSLPSV 611
           +  EF+  ++++L       F+ +FY     Y++   + +   +E   G  +I++ + S+
Sbjct: 11  VGREFVRQYYTLLNQAPD--FLHRFYGKSSSYVHGGLDSNGKPVEAVYGQTDIHKKVMSL 68

Query: 612 ESKEQCIKLLSCHERAISNDVIYCLESGDLDDILTPMEFYLQLMTLAPKECQQHFMFSIQ 791
             K+   K+      A  ND +     G+L +   PM  ++Q   LAP+    +  F +
Sbjct: 69  NFKDCRTKIRHVDAHATLNDGVVVQVMGELSNNRQPMRRFMQTFVLAPEGSVAN-KFYVH 127

Query: 792 NHLSSYFVILFEDSKEE 842
           N +  Y   +F DS  E
Sbjct: 128 NDIFRYQDEIFGDSDTE 144

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,510,031,707
Number of extensions: 28752826
Number of successful extensions: 75423
Number of sequences better than 10.0: 24
Number of HSP's gapped: 75387
Number of HSP's successfully gapped: 24
Length of query: 348
Length of database: 1,040,966,779
Length adjustment: 129
Effective length of query: 219
Effective length of database: 627,614,014
Effective search space: 137447469066
Effective search space used: 137447469066
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.93  gvh: 0.56  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U06588-1 is cyt
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0