Homology vs CSM-cDNA |
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Homology vs DNA |
Query= Contig-U06553-1 (Contig-U06553-1Q) /CSM_Contig/Contig-U06553-1Q.Seq.d (227 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041... 212 4e-51 1 (AU264115) Dictyostelium discoideum vegetative cDNA clone:VS... 212 4e-51 1 (AP009280) Solanum lycopersicum genomic DNA, chromosome 8, c... 40 0.12 4 (AJ828646) Helianthus annuus EST, clone HaCotR010D06. 34 0.38 2 (CU657954) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.51 1 (AY915911) Schistosoma japonicum splicing factor 4 mRNA, com... 46 0.51 1 (BU766692) SJEAIH03 SJE Schistosoma japonicum cDNA similar t... 46 0.51 1 (EK094683) 1092962026858 Global-Ocean-Sampling_GS-31-01-01-1... 34 1.4 2 (BH663698) BOHVD35TF BO_2_3_KB Brassica oleracea genomic clo... 34 1.4 2 (EK108528) 1092963077112 Global-Ocean-Sampling_GS-31-01-01-1... 34 1.4 2 (BH532868) BOGDF29TR BOGD Brassica oleracea genomic clone BO... 34 1.4 2 (EV590925) Dmel_neb_009584_0344_3069 D. melanogaster - 454 s... 32 1.4 3 (EY024125) JGI_CAFF436.rev CAFF Acropora palmata 15 day old ... 34 1.5 2 (CU571160) Zebrafish DNA sequence from clone CH73-160J1 in l... 44 2.0 1 (AC190525) Pan troglodytes BAC clone CH251-257H9 from chromo... 44 2.0 1 (AC095067) Homo sapiens BAC clone RP11-655F21 from 7, comple... 44 2.0 1 (AC126602) Ciona savignyi clone -4791857N6, *** SEQUENCING I... 44 2.0 1 (AC211982) Pan troglodytes chromosome 7 clone CH251-376H21, ... 44 2.0 1 (AC211789) Pan troglodytes chromosome 7 clone CH251-73F4, **... 44 2.0 1 (AC018998) Homo sapiens clone RP11-21H20, WORKING DRAFT SEQU... 44 2.0 1 (EJ543900) 1092955417751 Global-Ocean-Sampling_GS-29-01-01-1... 44 2.0 1 (DU482302) 1098415966513 CHORI-243 Ovis aries genomic clone ... 44 2.0 1 (DE209492) Branchiostoma floridae DNA, clone: CH302-098_K05_... 44 2.0 1 (AC224054) Bos taurus clone CH240-451E1, WORKING DRAFT SEQUE... 34 2.3 3 (CU207209) Medicago truncatula chromosome 5 clone mte1-84c7,... 40 3.2 3 (CR925809) Zebrafish DNA sequence from clone DKEYP-114A1 in ... 42 3.2 5 (BS000563) Pan troglodytes chromosome Y clone:PTB-623C04, co... 32 3.7 4 (AC168330) Strongylocentrotus purpuratus clone R3-58P5, WORK... 32 3.8 2 (AC092097) Homo sapiens chromosome UNK clone RP11-376A21, WO... 34 3.8 2 (AC144632) Mus musculus BAC clone RP23-106G16 from chromosom... 30 3.8 2 (BX005113) Zebrafish DNA sequence from clone CH211-203B20 in... 34 3.8 2 (AC126028) Mus musculus BAC clone RP24-542M6 from chromosome... 30 3.9 2 (AC141529) Rattus norvegicus clone CH230-516M9, WORKING DRAF... 34 3.9 2 (CS789996) Sequence 1252 from Patent WO2005031001. 30 3.9 2 (AC142368) Rattus norvegicus clone CH230-505G4, WORKING DRAF... 34 3.9 2 (AC005078) Homo sapiens BAC clone CTA-252K19 from 7, complet... 34 4.1 2 (AP009269) Solanum lycopersicum genomic DNA, chromosome 8, c... 40 4.3 3 (DU877736) 279002 Tomato HindIII BAC Library Solanum lycoper... 34 5.1 2 (CZ934123) 251575 Tomato EcoRI BAC Library Solanum lycopersi... 32 5.1 2 (FH493702) CHO_OF4610xo01f1.ab1 CHO_OF4 Nicotiana tabacum ge... 32 5.3 2 (DT199506) JGI_CAAS7063.rev CAAS Pimephales promelas brain 7... 40 5.3 2 (ES611758) MTGland_A011_2007-05-04/MTGlandA011_F03_011_1 Med... 32 5.3 2 (BQ140883) NF050B03PH1F1029 Phoma-infected Medicago truncatu... 32 5.6 2 (FH543855) CHO_OF4749xk06r1.ab1 CHO_OF4 Nicotiana tabacum ge... 40 5.6 2 (FH258780) CHO_OF3365xk18r1.ab1 CHO_OF3 Nicotiana tabacum ge... 40 5.7 2 (AC142319) Pan troglodytes BAC clone RP43-57F23 from chromos... 32 6.1 4 (AC218439) Bos taurus clone CH240-269B12, WORKING DRAFT SEQU... 34 6.3 4 (AC147672) Pan troglodytes BAC clone CH251-58K21 from chromo... 32 6.6 4 (BS000537) Pan troglodytes chromosome Y clone:PTB-100K18, co... 32 7.3 4 (CR384053) Zebrafish DNA sequence from clone DKEY-207B21 in ... 42 7.9 1 (BX890619) Zebrafish DNA sequence from clone CH211-288M1. 42 7.9 1 (BX005339) Zebrafish DNA sequence from clone DKEY-71C4 in li... 42 7.9 1 (BX004988) Zebrafish DNA sequence from clone CH211-79C4 in l... 42 7.9 1 (AL627263) Zebrafish DNA sequence from clone RP71-1L9 in lin... 42 7.9 1 (AC191859) Rhesus Macaque BAC CH250-378O7 () complete seque... 42 7.9 1 (CR382125) Kluyveromyces lactis strain NRRL Y-1140 chromosom... 42 7.9 1 (AC174344) Medicago truncatula clone mth2-167b8, complete se... 42 7.9 1 (AC165431) Medicago truncatula clone mth2-117b21, complete s... 42 7.9 1 (AR544957) Sequence 88 from patent US 6747137. 42 7.9 1 (AE014134) Drosophila melanogaster chromosome 2L, complete s... 42 7.9 1 (AC093045) Drosophila melanogaster, chromosome 2L, region 29... 42 7.9 1 (AC009523) Drosophila melanogaster, chromosome 2L, region 29... 42 7.9 1 (AC005417) Drosophila melanogaster, chromosome 2L, region 29... 42 7.9 1 (AL136136) Human DNA sequence from clone RP11-141E20 on chro... 42 7.9 1 (AC162253) Bos taurus clone CH240-109E19, WORKING DRAFT SEQU... 42 7.9 1 (AC161769) Bos taurus clone CH240-109C4, WORKING DRAFT SEQUE... 42 7.9 1 (AC161691) Bos taurus clone CH240-107N7, WORKING DRAFT SEQUE... 42 7.9 1 (AC160450) Bos taurus clone CH240-81G3, WORKING DRAFT SEQUEN... 42 7.9 1 (AC159753) Bos taurus clone CH240-81D13, WORKING DRAFT SEQUE... 42 7.9 1 (AC155086) Bos taurus clone CH240-38H19, WORKING DRAFT SEQUE... 42 7.9 1 (AC155077) Bos taurus clone CH240-35K10, WORKING DRAFT SEQUE... 42 7.9 1 (AC153705) Bos taurus clone CH240-24D5, WORKING DRAFT SEQUEN... 42 7.9 1 (AC153036) Bos taurus clone CH240-22M13, WORKING DRAFT SEQUE... 42 7.9 1 (AC152736) Bos taurus clone CH240-15C4, WORKING DRAFT SEQUEN... 42 7.9 1 (AC152645) Bos taurus clone CH240-16J22, WORKING DRAFT SEQUE... 42 7.9 1 (AC152627) Bos taurus clone CH240-6H4, WORKING DRAFT SEQUENC... 42 7.9 1 (CU651574) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 7.9 1 (AC230804) Bos taurus clone CH240-498N17, WORKING DRAFT SEQU... 42 7.9 1 (AC230652) Bos taurus clone CH240-502I1, WORKING DRAFT SEQUE... 42 7.9 1 (AC230613) Bos taurus clone CH240-503P18, WORKING DRAFT SEQU... 42 7.9 1 (AC230352) Bos taurus clone CH240-511H22, WORKING DRAFT SEQU... 42 7.9 1 (AC222012) Bos taurus clone CH240-374K17, WORKING DRAFT SEQU... 42 7.9 1 (AC221414) Bos taurus clone CH240-406J7, WORKING DRAFT SEQUE... 42 7.9 1 (AC221325) Bos taurus clone CH240-403K22, WORKING DRAFT SEQU... 42 7.9 1 (AC220473) Bos taurus clone CH240-357D17, WORKING DRAFT SEQU... 42 7.9 1 (AC218649) Bos taurus clone CH240-298J15, WORKING DRAFT SEQU... 42 7.9 1 (AC218208) Bos taurus clone CH240-291F7, WORKING DRAFT SEQUE... 42 7.9 1 (AC213387) Zea mays chromosome 4 clone CH201-56A22; ZMMBBc00... 42 7.9 1 (AC207534) Zea mays chromosome 5 clone ZMMBBb-291N5; ZMMBBb0... 42 7.9 1 (AC199547) Zea mays chromosome 4 clone CH201-456M14; ZMMBBc0... 42 7.9 1 (AC192210) Zea mays chromosome 3 clone CH201-347B23; ZMMBBc0... 42 7.9 1 (AC190932) Zea mays chromosome 5 clone CH201-139B10; ZMMBBc0... 42 7.9 1 (AC184487) Strongylocentrotus purpuratus clone R3-1003B3, WO... 42 7.9 1 (AC183913) Zea mays chromosome 3 clone CH201-291H7; ZMMBBc02... 42 7.9 1 (AC182963) Bos taurus clone CH240-221E15, WORKING DRAFT SEQU... 42 7.9 1 (AC178164) Strongylocentrotus purpuratus clone R3-3081J11, W... 42 7.9 1 (AC175191) Bos taurus clone CH240-147G7, *** SEQUENCING IN P... 42 7.9 1 (AC174576) Bos taurus clone CH240-414A9, WORKING DRAFT SEQUE... 42 7.9 1 (AC174197) Bos taurus clone CH240-304G15, WORKING DRAFT SEQU... 42 7.9 1 (AC173009) Bos taurus clone CH240-197F18, WORKING DRAFT SEQU... 42 7.9 1
>(AC116920) Dictyostelium discoideum chromosome 2 map 4415041-4520361 strain AX4, complete sequence. Length = 105320
Score = 212 bits (107), Expect = 4e-51 Identities = 107/107 (100%) Strand = Plus / Plus
Query: 121 tctacaataaccagagtaaaactttattacataaaagatttgtaaaattttgtttaaaga 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 342 tctacaataaccagagtaaaactttattacataaaagatttgtaaaattttgtttaaaga 401
Query: 181 atagtttattaccaaaatcggcaatcattataaaagaaaattaattc 227 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 402 atagtttattaccaaaatcggcaatcattataaaagaaaattaattc 448
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 177,740,469 Number of extensions: 11904060 Number of successful extensions: 3580526 Number of sequences better than 10.0: 123 Length of query: 227 Length of database: 95,242,211,685 Length adjustment: 23 Effective length of query: 204 Effective length of database: 93,106,754,628 Effective search space: 18993777944112 Effective search space used: 18993777944112 X1: 11 (21.8 bits) S2: 21 (42.1 bits)
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Homology vs Protein |
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