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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U06544-1
Contig ID Contig-U06544-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U06544-1 (Contig-U06544-1Q) /CSM_Contig/Contig-U06544-1Q.Seq.d
ATACGGCATCTATATGAATGTTCTAATCTTTCATCTCTAGGTAATTTTTG
GAAATGTTTTAATAAATTTGCTGTTGATGGATTTTTATATAATTCTTCAC
CTGATGTTAATCTATTTGATGGATCAAATTTAGAAGCATTTAATCTTGAT
TCGATTAATCTAAAAGGTGAACCTTTATGAGATTTTTTAAAATGAATATG
ATATGTTTTTGGTTTATCTTTATGTTCTCTTGGAACGATTAATTTTACAC
TATCATCTTCACACCATTCAACCTCTTTAATTGATTTCAATGGTATAATC
TTTCTCTTCTTTTTAACAGAGAATGATCCATAAAATACTATTGAATTATT
AGTGATACCAAATGTATTATAACGTAAATTAAACTTTGATCCTGTCTTTA
ATTTACACTCTTCACAATATATAATTGGTTCATCAATTTTCATACGTCTT
TTTAATTGGTCATTATCAGATTCTGAACTTGACATATCAGATCTTGAACT
ACTTGCACTTTCACTAGCACTTGATGATACACTACCTCTTCTACTTCTTC
CCATTTTTTTATTTATTTGATTTATTTAACTGATTGATTTANTTATTTAT
GTGATATTTAAATATTTATTTATTTATATTTATTTATTTGTTNGTTTATT
AAT
Gap no gap
Contig length 653
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 2211407
End point 2210754
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U06544
List of clone(s) 

est1=VSD443Z,1,654
Translated Amino Acid sequence 
irhlyecsnlsslgnfwkcfnkfavdgflynsspdvnlfdgsnleafnldsinlkgepl*
dflk*i*yvfglslcslgtinftlssshhstslidfngiiflffltendp*ntiellvip
nvl*RKLNFDPVFNLHSSQYIIGSSIFIRLFNWSLSDSELDISDLELLALSLALDDTLPL
LLLPIFLFI*fi*lidlxiyvifkylfiyiylfvxll
Translated Amino Acid sequence (All Frames) 
Frame A:
irhlyecsnlsslgnfwkcfnkfavdgflynsspdvnlfdgsnleafnldsinlkgepl*
dflk*i*yvfglslcslgtinftlssshhstslidfngiiflffltendp*ntiellvip
nvl*RKLNFDPVFNLHSSQYIIGSSIFIRLFNWSLSDSELDISDLELLALSLALDDTLPL
LLLPIFLFI*fi*lidlxiyvifkylfiyiylfvxll


Frame B:
ygiymnvlifhl*vifgnvlinlllmdfyiilhlmliylmdqi*khlilirli*kvnlye
if*neydmflvylyvllerlilhyhlhtiqpl*lismv*sfssf*qrmihkillny**yq
myynvn*tlilsliytlhni*lvhqfsyvflighyqilnltyqilnylhfh*hlmihylf
yffpffylfdlfn*lixlfm*ylniylfifiylxvy*


Frame C:
tasi*mf*sfisr*flemf**icc*wifi*fft*c*si*wikfrsi*s*fd*skr*tfmr
ffkmnmicfwfifmfswnd*fytiiftpfnlfn*fqwynlsllfnre*sikyy*iisdtk
ciit*ikl*scl*ftlftiynwfinfhtsf*lviirf*t*hirs*ttctftst**yttss
tsshffiyliyltd*fxylcdi*ifiylylficxfin
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06544-1 (Contig-U06544-1Q)
/CSM_Contig/Contig-U06544-1Q.Seq.d
         (653 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06544-1 (Contig-U06544-1Q) /CSM_Contig/Conti...  1094  0.0
Contig-U07244-1 (Contig-U07244-1Q) /CSM_Contig/Conti...    42  7e-04
Contig-U13968-1 (Contig-U13968-1Q) /CSM_Contig/Conti...    38  0.012
Contig-U12426-1 (Contig-U12426-1Q) /CSM_Contig/Conti...    38  0.012
Contig-U03742-1 (Contig-U03742-1Q) /CSM_Contig/Conti...    38  0.012
Contig-U12535-1 (Contig-U12535-1Q) /CSM_Contig/Conti...    36  0.046
Contig-U12422-1 (Contig-U12422-1Q) /CSM_Contig/Conti...    36  0.046
Contig-U10906-1 (Contig-U10906-1Q) /CSM_Contig/Conti...    36  0.046
Contig-U10807-1 (Contig-U10807-1Q) /CSM_Contig/Conti...    36  0.046
Contig-U06855-1 (Contig-U06855-1Q) /CSM_Contig/Conti...    36  0.046

>Contig-U06544-1 (Contig-U06544-1Q) /CSM_Contig/Contig-U06544-1Q.Seq.d
          Length = 653

 Score = 1094 bits (552), Expect = 0.0
 Identities = 552/552 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atacggcatctatatgaatgttctaatctttcatctctaggtaatttttggaaatgtttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atacggcatctatatgaatgttctaatctttcatctctaggtaatttttggaaatgtttt 60

                                                                       
Query: 61  aataaatttgctgttgatggatttttatataattcttcacctgatgttaatctatttgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aataaatttgctgttgatggatttttatataattcttcacctgatgttaatctatttgat 120

                                                                       
Query: 121 ggatcaaatttagaagcatttaatcttgattcgattaatctaaaaggtgaacctttatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggatcaaatttagaagcatttaatcttgattcgattaatctaaaaggtgaacctttatga 180

                                                                       
Query: 181 gattttttaaaatgaatatgatatgtttttggtttatctttatgttctcttggaacgatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gattttttaaaatgaatatgatatgtttttggtttatctttatgttctcttggaacgatt 240

                                                                       
Query: 241 aattttacactatcatcttcacaccattcaacctctttaattgatttcaatggtataatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aattttacactatcatcttcacaccattcaacctctttaattgatttcaatggtataatc 300

                                                                       
Query: 301 tttctcttctttttaacagagaatgatccataaaatactattgaattattagtgatacca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttctcttctttttaacagagaatgatccataaaatactattgaattattagtgatacca 360

                                                                       
Query: 361 aatgtattataacgtaaattaaactttgatcctgtctttaatttacactcttcacaatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aatgtattataacgtaaattaaactttgatcctgtctttaatttacactcttcacaatat 420

                                                                       
Query: 421 ataattggttcatcaattttcatacgtctttttaattggtcattatcagattctgaactt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ataattggttcatcaattttcatacgtctttttaattggtcattatcagattctgaactt 480

                                                                       
Query: 481 gacatatcagatcttgaactacttgcactttcactagcacttgatgatacactacctctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gacatatcagatcttgaactacttgcactttcactagcacttgatgatacactacctctt 540

                       
Query: 541 ctacttcttccc 552
           ||||||||||||
Sbjct: 541 ctacttcttccc 552


>Contig-U07244-1 (Contig-U07244-1Q) /CSM_Contig/Contig-U07244-1Q.Seq.d
          Length = 1342

 Score = 42.1 bits (21), Expect = 7e-04
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 48   ttggaaatgttttaataaatttgctgttg 76
            |||||||| ||||| ||||||||||||||
Sbjct: 1107 ttggaaatcttttactaaatttgctgttg 1079


>Contig-U13968-1 (Contig-U13968-1Q) /CSM_Contig/Contig-U13968-1Q.Seq.d
          Length = 1749

 Score = 38.2 bits (19), Expect = 0.012
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 251 tatcatcttcacaccattc 269
           |||||||||||||||||||
Sbjct: 189 tatcatcttcacaccattc 171


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9582
Number of Sequences: 6905
Number of extensions: 9582
Number of successful extensions: 973
Number of sequences better than 10.0: 91
length of query: 653
length of database: 5,674,871
effective HSP length: 16
effective length of query: 637
effective length of database: 5,564,391
effective search space: 3544517067
effective search space used: 3544517067
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11. 9
Homology vs DNA 
Query= Contig-U06544-1 (Contig-U06544-1Q) /CSM_Contig/Contig-U06544-1Q.Seq.d
         (653 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU264039) Dictyostelium discoideum vegetative cDNA clone:VS...  1094   0.0    1
(DB770765) Apis mellifera head cDNA, RIKEN full-length enric...    50   0.10   1
(DB758340) Apis mellifera head cDNA, RIKEN full-length enric...    50   0.10   1
(AC200151) Pongo abelii BAC clone CH276-494G7 from chromosom...    48   0.40   1
(CQ584138) Sequence 11896 from Patent WO0171042.                   48   0.40   1
(AE014296) Drosophila melanogaster chromosome 3L, complete s...    48   0.40   1
(AC093437) Drosophila melanogaster 3L BAC RP98-5P17 (Roswell...    48   0.40   1
(AC023678) Drosophila melanogaster 3L BAC RP98-14K14 (Roswel...    48   0.40   1
(AF131216) Homo sapiens chromosome 8 map 8p23-p22 clone CTB-...    48   0.40   1
(AC100809) Homo sapiens chromosome 8, clone CTC-493P15, comp...    48   0.40   1
(AC134100) Rattus norvegicus clone CH230-69P19, WORKING DRAF...    48   0.40   1
(AC128091) Rattus norvegicus clone CH230-321H16, *** SEQUENC...    48   0.40   1
(AC210037) Zea mays chromosome 6 clone CH201-574B1; ZMMBBc05...    48   0.40   1
(AC014962) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    48   0.40   1
(AC011959) Homo sapiens clone RP11-110L10, WORKING DRAFT SEQ...    48   0.40   1
(BZ717821) PUDAZ19TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    48   0.40   1
(BZ397203) EINDT66TR EI_10_12_KB Entamoeba invadens genomic ...    48   0.40   1
(AF065404) Bacillus anthracis virulence plasmid PX01, comple...    40   0.64   5
(AM623467) Entamoeba invadens IP1 GSS, clone inv132c01.q1k.        44   0.71   2
(AM615938) Entamoeba invadens IP1 GSS, clone inv071f12.q1k.        44   0.77   2
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595...    38   0.81   6
(AC219722) Bos taurus clone CH240-324F14, WORKING DRAFT SEQU...    36   0.84   2
(AL590043) Human DNA sequence from clone RP11-224F14 on chro...    36   0.94   5
(AC069431) Homo sapiens 3 BAC RP11-225N10 (Roswell Park Canc...    44   1.0    3
(FE810164) CCAG29043.b1 CCAG Petrolisthes cinctipes heart, g...    46   1.6    1
(FE800255) CCAG23121.g1 CCAG Petrolisthes cinctipes heart, g...    46   1.6    1
(AC144344) Medicago truncatula chromosome 6 clone mth2-8c18,...    42   1.8    5
(CR391935) Zebrafish DNA sequence from clone DKEY-256K13 in ...    40   2.3    3
(DQ889680) Bacillus cereus strain G9241 plasmid pBCXO1, comp...    40   2.3    5
(BJ399398) Dictyostelium discoideum cDNA clone:dds5c20, 3' e...    42   2.8    2
(AC118301) Rattus norvegicus clone CH230-149C19, WORKING DRA...    34   3.0    2
(EK154607) 1095456069283 Global-Ocean-Sampling_GS-31-01-01-1...    42   3.0    2
(CU618314) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   3.0    2
(AC211367) Zea mays chromosome 5 clone CH201-250N7; ZMMBBc02...    34   3.0    2
(CO164117) FLD1_46_A02.b1_A029 Root flooded Pinus taeda cDNA...    38   3.1    2
(CL688359) PRI0149b_B05_2 - PRI0149b.BR (829) Mixed stage fo...    36   3.4    2
(CO164196) FLD1_46_A02.g1_A029 Root flooded Pinus taeda cDNA...    38   3.5    2
(AC212313) Solanum lycopersicum chromosome 07 clone C07SLm00...    38   3.5    6
(AY372123) Plasmodium falciparum IT4_var4 erythrocyte membra...    32   3.6    4
(ER336170) 1092344308261 Global-Ocean-Sampling_GS-34-01-01-1...    42   3.6    2
(EJ310865) 1095390209201 Global-Ocean-Sampling_GS-27-01-01-1...    42   3.6    2
(EJ510614) 1095407080834 Global-Ocean-Sampling_GS-28-01-01-1...    42   3.6    2
(ER432147) 1092963781907 Global-Ocean-Sampling_GS-35-01-01-1...    42   3.6    2
(EK301646) 1095462366531 Global-Ocean-Sampling_GS-31-01-01-1...    42   3.7    2
(DD270253) Molecular Hepatotoxicology Modeling.                    34   3.8    2
(AJ271682) Rattus norvegicus mRNA for organic anion transpor...    34   3.8    2
(AF208545) Rattus norvegicus liver-specific organic anion tr...    34   3.8    2
(AF217450) Rattus norvegicus liver-specific organic anion tr...    34   3.9    2
(AF147740) Rattus norvegicus liver-specific organic anion tr...    34   3.9    2
(AF272568) Rattus norvegicus liver-specific organic anion tr...    34   4.4    2
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome.    38   5.0    15
(AC128453) Rattus norvegicus clone CH230-204C23, *** SEQUENC...    42   5.0    4
(AL360354) Plasmodium vivax telomeric YAC clone, complete fi...    36   5.5    6
(AL157784) Human DNA sequence *** SEQUENCING CANCELLED *** f...    36   5.5    6
(AL671671) Mouse DNA sequence from clone RP23-419D6 on chrom...    44   6.2    1
(AC133958) Mus musculus BAC clone RP23-367E13 from 14, compl...    44   6.2    1
(CR382127) Yarrowia lipolytica chromosome A of strain CLIB12...    44   6.2    1
(AP009845) Lotus japonicus genomic DNA, chromosome 5, clone:...    44   6.2    1
(AP009741) Lotus japonicus genomic DNA, chromosome 3, clone:...    44   6.2    1
(AP004896) Lotus japonicus genomic DNA, chromosome 5, clone:...    44   6.2    1
(AJ575660) Yarrowia lipolytica iah1, mts1, stl1, sip3, coq6,...    44   6.2    1
(CS741860) Sequence 9856 from Patent WO2005083127.                 44   6.2    1
(AY624075) Lytechinus variegatus axin mRNA, complete cds.          44   6.2    1
(AC092953) Homo sapiens 3 BAC RP11-531F16 (Roswell Park Canc...    44   6.2    1
(AC012450) Homo sapiens BAC clone RP11-351J7 from 2, complet...    44   6.2    1
(AC112489) Homo sapiens chromosome 3q clone RP11-21I23, WORK...    44   6.2    1
(CU914455) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.2    1
(AC036127) Homo sapiens chromosome 3 clone RP11-531F16 map 3...    44   6.2    1
(CU467767) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.2    1
(AP010595) Lotus japonicus genomic DNA, chromosome 5, clone:...    44   6.2    1
(AP010067) Lotus japonicus genomic DNA, chromosome 5, clone:...    44   6.2    1
(AP010026) Lotus japonicus genomic DNA, chromosome 2, clone:...    44   6.2    1
(AP009906) Lotus japonicus genomic DNA, clone: LjT04K19, TM2...    44   6.2    1
(AP007528) Lotus japonicus genomic DNA, chromosome 3, clone:...    44   6.2    1
(FH120282) CHO_OF3046xg18r1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   6.2    1
(ET945679) CHO_OF116xg19f1.ab1 CHO_OF Nicotiana tabacum geno...    44   6.2    1
(EK396728) 1095469524133 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.2    1
(EJ969361) 1093022068710 Global-Ocean-Sampling_GS-30-02-01-1...    44   6.2    1
(EJ944571) 1093018905921 Global-Ocean-Sampling_GS-30-02-01-1...    44   6.2    1
(AM622852) Entamoeba invadens IP1 GSS, clone inv108b08.p1k.        44   6.2    1
(CT324203) Sus scrofa genomic clone CH242-256M1, genomic sur...    44   6.2    1
(CT243445) Sus scrofa genomic clone PigE-5B16, genomic surve...    44   6.2    1
(AG233700) Lotus japonicus DNA, clone:LjB25k15_f.                  44   6.2    1
(CO513223) s13dSG24D0600046_129610 Glandular trichomes Medic...    44   6.2    1
(BF210231) 601873657F1 NIH_MGC_54 Homo sapiens cDNA clone IM...    44   6.2    1
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet...    44   6.2    1
(CP000939) Clostridium botulinum B1 str. Okra, complete genome.    44   6.2    1
(CP000728) Clostridium botulinum F str. Langeland, complete ...    44   6.2    1
(CP000727) Clostridium botulinum A str. Hall, complete genome.     44   6.2    1
(CP000726) Clostridium botulinum A str. ATCC 19397, complete...    44   6.2    1
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g...    44   6.2    1
(AC173085) Bos taurus clone CH240-279K23, WORKING DRAFT SEQU...    36   6.3    6
(AF007261) Reclinomonas americana mitochondrion, complete ge...    38   8.3    4

>(AU264039) Dictyostelium discoideum vegetative cDNA clone:VSD443,
           3' end single read.
          Length = 654

 Score = 1094 bits (552), Expect = 0.0
 Identities = 552/552 (100%)
 Strand = Plus / Plus


Query: 1   atacggcatctatatgaatgttctaatctttcatctctaggtaatttttggaaatgtttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atacggcatctatatgaatgttctaatctttcatctctaggtaatttttggaaatgtttt 60


Query: 61  aataaatttgctgttgatggatttttatataattcttcacctgatgttaatctatttgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aataaatttgctgttgatggatttttatataattcttcacctgatgttaatctatttgat 120


Query: 121 ggatcaaatttagaagcatttaatcttgattcgattaatctaaaaggtgaacctttatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggatcaaatttagaagcatttaatcttgattcgattaatctaaaaggtgaacctttatga 180


Query: 181 gattttttaaaatgaatatgatatgtttttggtttatctttatgttctcttggaacgatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gattttttaaaatgaatatgatatgtttttggtttatctttatgttctcttggaacgatt 240


Query: 241 aattttacactatcatcttcacaccattcaacctctttaattgatttcaatggtataatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aattttacactatcatcttcacaccattcaacctctttaattgatttcaatggtataatc 300


Query: 301 tttctcttctttttaacagagaatgatccataaaatactattgaattattagtgatacca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttctcttctttttaacagagaatgatccataaaatactattgaattattagtgatacca 360


Query: 361 aatgtattataacgtaaattaaactttgatcctgtctttaatttacactcttcacaatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aatgtattataacgtaaattaaactttgatcctgtctttaatttacactcttcacaatat 420


Query: 421 ataattggttcatcaattttcatacgtctttttaattggtcattatcagattctgaactt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ataattggttcatcaattttcatacgtctttttaattggtcattatcagattctgaactt 480


Query: 481 gacatatcagatcttgaactacttgcactttcactagcacttgatgatacactacctctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gacatatcagatcttgaactacttgcactttcactagcacttgatgatacactacctctt 540


Query: 541 ctacttcttccc 552
           ||||||||||||
Sbjct: 541 ctacttcttccc 552

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 757,297,972
Number of extensions: 46804250
Number of successful extensions: 3910229
Number of sequences better than 10.0: 94
Length of query: 653
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 630
Effective length of database: 93,106,754,628
Effective search space: 58657255415640
Effective search space used: 58657255415640
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.22
Homology vs Protein 
Query= Contig-U06544-1 (Contig-U06544-1Q) /CSM_Contig/Contig-U06544-1Q.Seq.d
         (653 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC007166_8(AC007166|pid:none) Arabidopsis thaliana chromosome 2 ...    36   1.1
(Q54IL5) RecName: Full=UDP-sugar-dependent glycosyltransferase 5...    34   4.3
AF098916_1(AF098916|pid:none) Dictyostelium discoideum sterol gl...    34   4.3
CR940347_589(CR940347|pid:none) Theileria annulata strain Ankara...    34   4.3
M96259_1(M96259|pid:none) Spinacia oleracea 85 kDa cold acclimat...    33   5.6
AM999887_104(AM999887|pid:none) Wolbachia endosymbiont of Culex ...    33   7.3
CP000361_1842(CP000361|pid:none) Arcobacter butzleri RM4018, com...    33   9.5

>AC007166_8(AC007166|pid:none) Arabidopsis thaliana chromosome 2
           clone F14P14 map mi421, complete sequence.
           &AF367339_1(AF367339|pid:none)
           &AY093990_1(AY093990|pid:none)
          Length = 510

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 30/111 (27%), Positives = 46/111 (41%)
 Frame = -1

Query: 347 NSIVFYGSFSVKKKRKIIPLKSIKEVEWCEDDSVKLIVPREHKDKPKTYHIHFKKSHKGS 168
           N  +F  SFS         + S+    + E+ +VK         KPKT + H K S  GS
Sbjct: 79  NGCIFEDSFS----DDFCTIHSLLGRRFLEEKTVK----DSKNSKPKTEYSHVKVSIAGS 130

Query: 167 PFRLIESRLNASKFDPSNRLTSGEELYKNPSTANLLKHFQKLPRDERLEHS 15
            F L+   L    F    +  S E L K  ++ + +  F+  P  E++  S
Sbjct: 131 GFLLLCCALCCPCFHKERKANSHEVLPKESNSVHQVSSFEMSPSSEKIPQS 181

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 753,661,358
Number of extensions: 13577053
Number of successful extensions: 34443
Number of sequences better than 10.0: 7
Number of HSP's gapped: 34368
Number of HSP's successfully gapped: 7
Length of query: 217
Length of database: 1,040,966,779
Length adjustment: 123
Effective length of query: 94
Effective length of database: 646,839,724
Effective search space: 60802934056
Effective search space used: 60802934056
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.94  gvh: 0.64  alm: 0.31  top: 0.80  tms: 0.07  mit: 0.38  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.59  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U06544-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0