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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U06541-1
Contig ID Contig-U06541-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U06541-1 (Contig-U06541-1Q) /CSM_Contig/Contig-U06541-1Q.Seq.d
ACTTAAATAGATACTAATAAAAAAATGAAATTATTATTTATTTTATTAAT
TTTAACAATAACTATTAAAAATTGTTTATCAATTAATATAAACGATAATA
ATAATCAAATTATAAATTTAAAAATAAACGATACATCCTATTCAATGGTA
CCATATCAAGATGAAGCATGTGCTAATTTGGAAGAAAGTATTGGTTTTAC
ATTCCCAAGTTCACCATCAAAAGTAAAAGAGGTAATGACAGTTTTTGGTC
AATTTAATAATAATTTCTGTGTAGTGATTTCAAATGATGGTTCAGGTACA
TTTGAGATTGAATGGTATATCGATCAAGATTGTTCAAACATCGCACCAAA
ATCAAAACCATATTCAACTGAACAATATCAAATTGGGAAATGTTTATACC
TCAAGTACAATGGGTTCATACTATACTCTAACTGAGACCGATCAAGTCCA
ATTCGATGAAAACACATTAATCATTCAAGATACCATCAAACAAGATAATA
GTAAATGTAATTCAGTTAGAGAGGGTTATTATAGTTTTGTTAAAAACTCT
ACTCAATTCCAAGAAATGAGAGGCTGGGTGACCTTTACTGATACTTATTA
TTGTACTGACAATTTACAACCATTTTGTTATTCTTGTTCCGATGAGGGTT
GTAATCAACTTTATTTAGAACAAACTTGTGTTCAACAAGATAACTTTAAT
ATTAAATGTTTGGTTCATCATCATCTTCTTCTTTCTAAATTTTAATAAA
Gap no gap
Contig length 749
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 4966214
End point 4966964
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 2
Link to clone list U06541
List of clone(s) 

est1=VSD427E,1,750
est2=VSD827F,158,359
Translated Amino Acid sequence 
lk*ilikk*nyylfy*f*q*llkivyqli*tiiiikl*i*k*tihpiqwyhikmkhvliw
kkvlvlhsqvhhqk*kr**qflvnliiisv**FQMMVQVHLRLNGISIKIVQTSHQNQNH
IQLNNIKLGNVYTSSTMGSYYTLTETDQVQFDENTLIIQDTIKQDNSKCNSVREGYYSFV
KNSTQFQEMRGWVTFTDTYYCTDNLQPFCYSCSDEGCNQLYLEQTCVQQDNFNIKCLVHH
HLLLSKF**
Translated Amino Acid sequence (All Frames) 
Frame A:
t*idtnkkmkllfilliltitiknclsinindnnnqiinlkindtsysmvpyqdeacanl
eesigftfpsspskvkevmtvfgqfnnnfcvvisndgsgtfeiewyidqdcsniapkskp
ysteqyqigkclylkyngfilysn*drsspir*khinhsryhqtr***m*fs*rgll*fc
*klysiprnerlgdly*yllly*qfttillflfr*gl*stlfrtnlcstr*l*y*mfgss
ssssf*ili


Frame B:
lk*ilikk*nyylfy*f*q*llkivyqli*tiiiikl*i*k*tihpiqwyhikmkhvliw
kkvlvlhsqvhhqk*kr**qflvnliiisv**FQMMVQVHLRLNGISIKIVQTSHQNQNH
IQLNNIKLGNVYTSSTMGSYYTLTETDQVQFDENTLIIQDTIKQDNSKCNSVREGYYSFV
KNSTQFQEMRGWVTFTDTYYCTDNLQPFCYSCSDEGCNQLYLEQTCVQQDNFNIKCLVHH
HLLLSKF**


Frame C:
lnry**kneiiiyfinfnnny*klfin*ykr***snykfknkryilfngtisr*smc*fg
rkywfyipkftikskrgndsfwsi***flcsdfk*wfryi*d*mvyrsrlfkhrtkikti
fn*tisnwemfipqvqwvhtil*lrpiksnsmkth*sfkipsnkiivnviqlerviivll
ktllnskk*eag*plliliivltiynhfvilvpmrvvinfi*nklvfnkitlilnvwfii
iffflnfnk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06541-1 (Contig-U06541-1Q)
/CSM_Contig/Contig-U06541-1Q.Seq.d
         (749 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06541-1 (Contig-U06541-1Q) /CSM_Contig/Conti...  1253  0.0
Contig-U12531-1 (Contig-U12531-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U11385-1 (Contig-U11385-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U10817-1 (Contig-U10817-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U14570-1 (Contig-U14570-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U14400-1 (Contig-U14400-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U13894-1 (Contig-U13894-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U13362-1 (Contig-U13362-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U12528-1 (Contig-U12528-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U11472-1 (Contig-U11472-1Q) /CSM_Contig/Conti...    38  0.013

>Contig-U06541-1 (Contig-U06541-1Q) /CSM_Contig/Contig-U06541-1Q.Seq.d
          Length = 749

 Score = 1253 bits (632), Expect = 0.0
 Identities = 632/632 (100%)
 Strand = Plus / Plus

                                                                       
Query: 118 ttaaaaataaacgatacatcctattcaatggtaccatatcaagatgaagcatgtgctaat 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 ttaaaaataaacgatacatcctattcaatggtaccatatcaagatgaagcatgtgctaat 177

                                                                       
Query: 178 ttggaagaaagtattggttttacattcccaagttcaccatcaaaagtaaaagaggtaatg 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ttggaagaaagtattggttttacattcccaagttcaccatcaaaagtaaaagaggtaatg 237

                                                                       
Query: 238 acagtttttggtcaatttaataataatttctgtgtagtgatttcaaatgatggttcaggt 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 acagtttttggtcaatttaataataatttctgtgtagtgatttcaaatgatggttcaggt 297

                                                                       
Query: 298 acatttgagattgaatggtatatcgatcaagattgttcaaacatcgcaccaaaatcaaaa 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 acatttgagattgaatggtatatcgatcaagattgttcaaacatcgcaccaaaatcaaaa 357

                                                                       
Query: 358 ccatattcaactgaacaatatcaaattgggaaatgtttatacctcaagtacaatgggttc 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ccatattcaactgaacaatatcaaattgggaaatgtttatacctcaagtacaatgggttc 417

                                                                       
Query: 418 atactatactctaactgagaccgatcaagtccaattcgatgaaaacacattaatcattca 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 atactatactctaactgagaccgatcaagtccaattcgatgaaaacacattaatcattca 477

                                                                       
Query: 478 agataccatcaaacaagataatagtaaatgtaattcagttagagagggttattatagttt 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 agataccatcaaacaagataatagtaaatgtaattcagttagagagggttattatagttt 537

                                                                       
Query: 538 tgttaaaaactctactcaattccaagaaatgagaggctgggtgacctttactgatactta 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tgttaaaaactctactcaattccaagaaatgagaggctgggtgacctttactgatactta 597

                                                                       
Query: 598 ttattgtactgacaatttacaaccattttgttattcttgttccgatgagggttgtaatca 657
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttattgtactgacaatttacaaccattttgttattcttgttccgatgagggttgtaatca 657

                                                                       
Query: 658 actttatttagaacaaacttgtgttcaacaagataactttaatattaaatgtttggttca 717
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 actttatttagaacaaacttgtgttcaacaagataactttaatattaaatgtttggttca 717

                                           
Query: 718 tcatcatcttcttctttctaaattttaataaa 749
           ||||||||||||||||||||||||||||||||
Sbjct: 718 tcatcatcttcttctttctaaattttaataaa 749


 Score = 36.2 bits (18), Expect = 0.053
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                            
Query: 1  acttaaatagatactaat 18
          ||||||||||||||||||
Sbjct: 1  acttaaatagatactaat 18


>Contig-U12531-1 (Contig-U12531-1Q) /CSM_Contig/Contig-U12531-1Q.Seq.d
          Length = 1189

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 714 ttcatcatcatcttcttctt 733
           ||||||||||||||||||||
Sbjct: 341 ttcatcatcatcttcttctt 322


>Contig-U11385-1 (Contig-U11385-1Q) /CSM_Contig/Contig-U11385-1Q.Seq.d
          Length = 2148

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 714 ttcatcatcatcttcttctt 733
           ||||||||||||||||||||
Sbjct: 129 ttcatcatcatcttcttctt 110


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,597
Number of Sequences: 6905
Number of extensions: 12597
Number of successful extensions: 1319
Number of sequences better than 10.0: 177
length of query: 749
length of database: 5,674,871
effective HSP length: 16
effective length of query: 733
effective length of database: 5,564,391
effective search space: 4078698603
effective search space used: 4078698603
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11. 9
Homology vs DNA 
Query= Contig-U06541-1 (Contig-U06541-1Q) /CSM_Contig/Contig-U06541-1Q.Seq.d
         (749 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU264013) Dictyostelium discoideum vegetative cDNA clone:VS...   694   0.0    2
(AU264012) Dictyostelium discoideum vegetative cDNA clone:VS...   765   0.0    2
(AU264615) Dictyostelium discoideum vegetative cDNA clone:VS...   327   3e-85  1
(AP004536) Lotus japonicus genomic DNA, chromosome 4, clone:...    40   0.17   4
(AC189734) Trichinella spiralis BAC clone TS195-20H12 from c...    40   0.65   4
(DJ357782) METHODS AND NUCLEIC ACIDS FOR THE ANALYSIS OF GEN...    42   0.95   2
(DJ357664) METHODS AND NUCLEIC ACIDS FOR THE ANALYSIS OF GEN...    42   0.95   2
(CS113501) Sequence 259 from Patent WO2005054517.                  42   0.95   2
(CS113383) Sequence 141 from Patent WO2005054517.                  42   0.95   2
(CZ931968) 251978 Tomato EcoRI BAC Library Solanum lycopersi...    40   1.6    2
(AP010579) Lotus japonicus genomic DNA, clone: LjT06N24, TM1...    46   1.9    1
(AP010578) Lotus japonicus genomic DNA, clone: LjT46I13, TM1...    46   1.9    1
(AC009767) Homo sapiens chromosome 15 clone RP11-343A10 map ...    46   1.9    1
(EK470420) 1095469448788 Global-Ocean-Sampling_GS-32-01-01-1...    46   1.9    1
(ED434320) AUAC-aau89b03.b1 Ascaris suum whole genome shotgu...    46   1.9    1
(ED197514) AUAC-aay62a09.b1 Ascaris suum whole genome shotgu...    46   1.9    1
(DX538610) GH_MBb0046E24f GH_MBb Gossypium hirsutum genomic ...    46   1.9    1
(ES226393) MpSG_ag6_H04 Myzus persicae, tobacco lineage, aph...    46   1.9    1
(ES222169) MpGVN_ag2_O17 Myzus persicae, line G006, PLRV fre...    46   1.9    1
(ES221451) MpGV_ag3_J16 Myzus persicae, line G006, PLRV infe...    46   1.9    1
(EG617027) REPROTRACTF095449F22 POSSUM_01-POSSUM-C-REPROTRAC...    46   1.9    1
(EE570712) A01_A01fv4m1_pDNRf_531608 Myzus persicae, line F0...    46   1.9    1
(EE263373) F02_F02gf1c4_pDNRf_501665 Myzus persicae, line G0...    46   1.9    1
(DW156493) CLVX8538.b1_C23.ab1 CLV(XYZ) lettuce virosa Lactu...    46   1.9    1
(DW149076) CLVX1440.b1_O24.ab1 CLV(XYZ) lettuce virosa Lactu...    46   1.9    1
(FG890086) UCRVU08_CCNS11067_b1 Cowpea IT97K-461-4 Mixed Tis...    46   1.9    1
(FG889721) UCRVU08_CCNS10875_b1 Cowpea IT97K-461-4 Mixed Tis...    46   1.9    1
(DY842948) CTOZ9446.b1_K10.ab1 CTO(XYZ) dandelion Taraxacum ...    42   2.4    2
(AM435048) Vitis vinifera, whole genome shotgun sequence, co...    36   2.4    4
(AC180729) Strongylocentrotus purpuratus clone R3-3083K1, WO...    32   3.6    2
(EL905910) INIT2_7_B09.g1_A006 G5 trophont cDNA (INIT2) Icht...    36   4.5    2
(AZ682295) ENTKS88TF Entamoeba histolytica Sheared DNA Entam...    38   4.7    2
(DY892665) CeleSEQ11257 Cunninghamella elegans pBluescript (...    32   6.7    3
(AC213429) Populus trichocarpa clone POP097-P07, complete se...    38   6.7    2
(AJ304832) Blumeria graminis bac1 gene for adenylate cyclase...    44   7.5    1
(EF152287) Strongylocentrotus purpuratus BRCA1 (brca1) mRNA,...    44   7.5    1
(AC131169) Rattus norvegicus clone CH230-82I19, *** SEQUENCI...    44   7.5    1
(AC112329) Rattus norvegicus clone CH230-184F19, *** SEQUENC...    44   7.5    1
(AC094410) Rattus norvegicus clone CH230-3M24, WORKING DRAFT...    44   7.5    1
(AC219677) Bos taurus clone CH240-325N4, WORKING DRAFT SEQUE...    44   7.5    1
(AC219015) Solanum tuberosum chromosome 6 clone RHPOTKEY197N...    44   7.5    1
(AC188842) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    44   7.5    1
(ER526930) 1093015689742 Global-Ocean-Sampling_GS-35-01-01-1...    44   7.5    1
(EK565960) 1095521040777 Global-Ocean-Sampling_GS-32-01-01-1...    44   7.5    1
(EJ370423) 1092963722542 Global-Ocean-Sampling_GS-28-01-01-1...    44   7.5    1
(ED814387) ML__Ba0092I20r ML__Ba Mimulus lewisii genomic, ge...    44   7.5    1
(CW927722) EDCBN39TR A. castellanii, 6-8 kb library from tot...    44   7.5    1
(CW927554) EDCBM45TF A. castellanii, 6-8 kb library from tot...    44   7.5    1
(CL534328) trib011xa13.g1 T. reesei HindIII BAC library Hypo...    44   7.5    1
(CL531533) trib005xd13.b1 T. reesei HindIII BAC library Hypo...    44   7.5    1
(CL048834) CH216-68N15_RM1.1 CH216 Xenopus (Silurana) tropic...    44   7.5    1
(CC908274) t041n22ba.r1 TAMBT Bos taurus genomic clone t041n...    44   7.5    1
(BZ119613) CH230-366A9.TJ CHORI-230 Segment 2 Rattus norvegi...    44   7.5    1
(BH920846) odh94e05.b1 B.oleracea002 Brassica oleracea genom...    44   7.5    1
(DW476284) GH_RMIRS_002_B08_R Cotton Normalized Library rand...    44   7.5    1
(DW476283) GH_RMIRS_002_B08_F Cotton Normalized Library rand...    44   7.5    1
(DR951133) EST1142672 Aquilegia cDNA library Aquilegia formo...    44   7.5    1
(CX819543) AGM_P0_1G Adult male salivary glands 0-2 days aft...    44   7.5    1
(CV694978) SJS_016_17.T7 SJS Schistosoma japonicum cDNA, mRN...    44   7.5    1
(AL826778) Triticum aestivum (mercia) clone C07_p537_plate_9...    44   7.5    1
(CK273325) EST719403 potato abiotic stress cDNA library Sola...    44   7.5    1
(FG844345) UCRVU05_CCNN6295_b1 Cowpea IT84S-2049 Mixed Tissu...    44   7.5    1
(FG816419) UCRVU04_CCNI3549_b1 Cowpea 524B Mixed Tissue and ...    44   7.5    1
(AW356957) 39674 MARC 2BOV Bos taurus cDNA 5', mRNA sequence.      44   7.5    1
(FC458936) UCRVU07_CCNP644_b1 Cowpea UCR 779 Mixed Tissue an...    44   7.5    1
(DQ121376) Uncultured bacterium clone YC01G10, partial seque...    44   7.5    1
(AM469731) Vitis vinifera contig VV78X234630.4, whole genome...    42   9.2    2
(CU914681) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   9.5    5

>(AU264013) Dictyostelium discoideum vegetative cDNA clone:VSD427,
           3' end single read.
          Length = 749

 Score =  694 bits (350), Expect(2) = 0.0
 Identities = 350/350 (100%)
 Strand = Plus / Plus


Query: 400 ctcaagtacaatgggttcatactatactctaactgagaccgatcaagtccaattcgatga 459
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ctcaagtacaatgggttcatactatactctaactgagaccgatcaagtccaattcgatga 458


Query: 460 aaacacattaatcattcaagataccatcaaacaagataatagtaaatgtaattcagttag 519
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aaacacattaatcattcaagataccatcaaacaagataatagtaaatgtaattcagttag 518


Query: 520 agagggttattatagttttgttaaaaactctactcaattccaagaaatgagaggctgggt 579
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 agagggttattatagttttgttaaaaactctactcaattccaagaaatgagaggctgggt 578


Query: 580 gacctttactgatacttattattgtactgacaatttacaaccattttgttattcttgttc 639
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gacctttactgatacttattattgtactgacaatttacaaccattttgttattcttgttc 638


Query: 640 cgatgagggttgtaatcaactttatttagaacaaacttgtgttcaacaagataactttaa 699
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 cgatgagggttgtaatcaactttatttagaacaaacttgtgttcaacaagataactttaa 698


Query: 700 tattaaatgtttggttcatcatcatcttcttctttctaaattttaataaa 749
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 tattaaatgtttggttcatcatcatcttcttctttctaaattttaataaa 748

 Score =  527 bits (266), Expect(2) = 0.0
 Identities = 266/266 (100%)
 Strand = Plus / Plus


Query: 134 catcctattcaatggtaccatatcaagatgaagcatgtgctaatttggaagaaagtattg 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 catcctattcaatggtaccatatcaagatgaagcatgtgctaatttggaagaaagtattg 193


Query: 194 gttttacattcccaagttcaccatcaaaagtaaaagaggtaatgacagtttttggtcaat 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 gttttacattcccaagttcaccatcaaaagtaaaagaggtaatgacagtttttggtcaat 253


Query: 254 ttaataataatttctgtgtagtgatttcaaatgatggttcaggtacatttgagattgaat 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ttaataataatttctgtgtagtgatttcaaatgatggttcaggtacatttgagattgaat 313


Query: 314 ggtatatcgatcaagattgttcaaacatcgcaccaaaatcaaaaccatattcaactgaac 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ggtatatcgatcaagattgttcaaacatcgcaccaaaatcaaaaccatattcaactgaac 373


Query: 374 aatatcaaattgggaaatgtttatac 399
           ||||||||||||||||||||||||||
Sbjct: 374 aatatcaaattgggaaatgtttatac 399

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 786,247,239
Number of extensions: 50573318
Number of successful extensions: 4209607
Number of sequences better than 10.0: 68
Length of query: 749
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 725
Effective length of database: 97,308,875,965
Effective search space: 70548935074625
Effective search space used: 70548935074625
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.22
Homology vs Protein 
Query= Contig-U06541-1 (Contig-U06541-1Q) /CSM_Contig/Contig-U06541-1Q.Seq.d
         (749 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115680_23(AC115680|pid:none) Dictyostelium discoideum chromoso...    39   0.23
AL766850_70(AL766850|pid:none) Streptococcus agalactiae NEM316 c...    37   0.50
AY142086_2(AY142086|pid:none) Borrelia burgdorferi strain N40 pl...    35   1.9
AM270289_6(AM270289|pid:none) Aspergillus niger contig An12c0330...    35   2.5
T32326(T32326)hypothetical protein C41H7.7 - Caenorhabditis eleg...    27   7.0
AF025450_9(AF025450|pid:none) Caenorhabditis elegans cosmid C41H...    27   7.0
AM412317_2162(AM412317|pid:none) Clostridium botulinum A str. AT...    33   7.3
BC099323_1(BC099323|pid:none) Xenopus laevis hypothetical protei...    33   7.3

>AC115680_23(AC115680|pid:none) Dictyostelium discoideum chromosome
           2 map 4915084-5005461 strain AX4, complete sequence.
          Length = 222

 Score = 38.5 bits (88), Expect = 0.23
 Identities = 28/108 (25%), Positives = 47/108 (43%)
 Frame = +2

Query: 419 YYTLTETDQVQFDENTLIIQDTIKQDNSKCNSVREGYYSFVKNSTQFQEMRGWVTFTDTY 598
           +Y ++ ++Q   + N+ I       D+  CN        +  N+T+  E     +   +Y
Sbjct: 118 FYKVSISNQPLINSNSYIKSFMYNVDS--CNENEVTNIQYFSNATKAIEKS--TSRPSSY 173

Query: 599 YCTDNLQPFCYSCSDEGCNQLYLEQTCVQQDNFNIKCLVHHHLLLSKF 742
           YC+ + QP+ Y CS  GC   Y    C QQ N     L++ +   S F
Sbjct: 174 YCSASNQPYTYYCSIWGCGPSYTSANC-QQINSTSPTLINENNYYSVF 220

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,026,505,805
Number of extensions: 19299358
Number of successful extensions: 39964
Number of sequences better than 10.0: 8
Number of HSP's gapped: 39949
Number of HSP's successfully gapped: 10
Length of query: 249
Length of database: 1,040,966,779
Length adjustment: 125
Effective length of query: 124
Effective length of database: 640,431,154
Effective search space: 79413463096
Effective search space used: 79413463096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.76  gvh: 0.43  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.60  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: peroxisomal
	 16.0 %: mitochondrial
	 12.0 %: nuclear
	  4.0 %: cytoskeletal

>> prediction for Contig-U06541-1 is cyt
VS (DIR, S) 2
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0