Contig-U06538-1 |
Contig ID |
Contig-U06538-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
no gap |
Contig length |
692 |
Chromosome number (1..6, M) |
1 |
Chromosome length |
4919822 |
Start point |
4387659 |
End point |
4388339 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
3 |
Number of EST |
3 |
Link to clone list |
U06538 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11. 9 |
Homology vs DNA |
Query= Contig-U06538-1 (Contig-U06538-1Q) /CSM_Contig/Contig-U06538-1Q.Seq.d (692 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU263989) Dictyostelium discoideum vegetative cDNA clone:VS... 674 0.0 3 (AU271245) Dictyostelium discoideum vegetative cDNA clone:VS... 505 0.0 3 (AU269194) Dictyostelium discoideum vegetative cDNA clone:VS... 622 0.0 2 (AL954824) Mouse DNA sequence from clone RP23-326I8 on chrom... 42 0.020 2 (AL773599) Mouse DNA sequence from clone RP23-326I8 on chrom... 42 0.020 2 (ES803040) UFL_520_23 Cotton fiber 0-10 day post anthesis Go... 52 0.028 1 (DW480881) GH_RMIRS_027_H01_R Cotton Normalized Library rand... 52 0.028 1 (DW480880) GH_RMIRS_027_H01_001_F Cotton Normalized Library ... 52 0.028 1 (AI728149) BNLGHi9994 Six-day Cotton fiber Gossypium hirsutu... 52 0.028 1 (DJ025882) Genome-wide DNA marker of Saccharomyces cerevisiae. 38 0.063 2 (Z69382) S.cerevisiae 37,800 bp segment of chromosome XIV. 38 0.074 2 (Z71387) S.cerevisiae chromosome XIV reading frame ORF YNL111c. 38 0.084 2 (L22494) Saccharomyces cerevisiae cytochrome b5 (CYB5) gene,... 38 0.085 2 (DB650613) Saccharomyces cerevisiae mRNA, clone: S03052-78_H... 38 0.087 2 (DB646219) Saccharomyces cerevisiae mRNA, clone: S03052-42_M... 38 0.088 2 (DB648591) Saccharomyces cerevisiae mRNA, clone: S03052-55_M... 38 0.089 2 (DB639478) Saccharomyces cerevisiae mRNA, clone: S03052-10_F... 38 0.089 2 (DB641064) Saccharomyces cerevisiae mRNA, clone: S03052-16_O... 38 0.089 2 (AY693106) Saccharomyces cerevisiae clone FLH115139.01X YNL1... 38 0.090 2 (EA376839) Sequence 25662 from patent US 7314974. 38 0.090 2 (DJ207695) Method for identification of useful proteins deri... 38 0.090 2 (BD343987) Method of monitoring gene expression. 38 0.090 2 (BD341931) Method of monitoring gene expression. 38 0.090 2 (AL845550) Zebrafish DNA sequence from clone CH211-121D13 in... 50 0.11 1 (CU459094) Zebrafish DNA sequence from clone CH73-106K19 in ... 46 0.17 3 (CK016485) AGENCOURT_16543943 NIH_ZGC_10 Danio rerio cDNA cl... 46 0.32 2 (CR762424) Zebrafish DNA sequence from clone RP71-52E8 in li... 48 0.44 1 (BX004885) Zebrafish DNA sequence from clone CH211-103L6. 48 0.44 1 (AC209105) Populus trichocarpa clone POP086-P02, complete se... 48 0.44 1 (CL590045) OB__Ba0093F22.r OB__Ba Oryza brachyantha genomic ... 48 0.44 1 (AC117082) Dictyostelium discoideum chromosome 2 map complem... 36 1.0 2 (EK265358) 1095462222858 Global-Ocean-Sampling_GS-31-01-01-1... 36 1.2 2 (EK287786) 1095462318678 Global-Ocean-Sampling_GS-31-01-01-1... 36 1.2 2 (AC179390) Strongylocentrotus purpuratus clone R3-60I19, WOR... 42 1.4 4 (AP006634) Lotus japonicus genomic DNA, chromosome 5, clone:... 46 1.4 3 (CU104743) Zebrafish DNA sequence from clone CH73-310I18 in ... 46 1.7 1 (CR382293) Zebrafish DNA sequence from clone CH211-235M18 in... 46 1.7 1 (BX927158) Zebrafish DNA sequence from clone DKEY-106K1 in l... 46 1.7 1 (BX323987) Zebrafish DNA sequence from clone DKEY-125E8. 46 1.7 1 (BX321904) Zebrafish DNA sequence from clone DKEY-279K15 in ... 46 1.7 1 (AL137140) Human DNA sequence from clone RP11-137M6 on chrom... 46 1.7 1 (CU633940) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.7 1 (CU467830) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.7 1 (AC230241) Bos taurus clone CH240-515N23, WORKING DRAFT SEQU... 46 1.7 1 (AC193720) Colobus guereza clone CH272-451F1, WORKING DRAFT ... 46 1.7 1 (AC168548) Strongylocentrotus purpuratus clone R3-3091I21, W... 46 1.7 1 (EE570149) B06_B06fm4i12_pDNRf_533089 Myzus persicae, line F... 46 1.7 1 (DN800140) G.hir-drought stressed seedling 55 5 week old dro... 46 1.7 1 (CT721300) Danio rerio EST, clone ZF_mu_236e17 5'. 46 1.7 1 (CK017383) AGENCOURT_16542856 NIH_ZGC_10 Danio rerio cDNA cl... 46 1.7 1 (CK016507) AGENCOURT_16544134 NIH_ZGC_10 Danio rerio cDNA cl... 46 1.7 1 (BF717532) fd46a09.y1 Zebrafish WashU MPIMG EST Danio rerio ... 46 1.7 1 (EX854964) CBNF11094.rev CBNF Phycomyces blakesleeanus NRRL1... 46 1.7 1 (EX457728) sq27e0118e Alexandrium catenella ACC07 expressed ... 46 1.7 1 (AW018584) fd48g02.y1 Zebrafish WashU MPIMG EST Danio rerio ... 46 1.7 1 (CR955011) Medicago truncatula chromosome 5 clone mth2-85n3,... 38 1.8 2 (EL501848) 093_PFLAB1-S-PLATE5B.AB1 Blood stage Plasmodium f... 30 1.8 3 (CP000253) Staphylococcus aureus subsp. aureus NCTC 8325, co... 38 2.7 13 (BA000018) Staphylococcus aureus subsp. aureus N315 DNA, com... 34 2.8 14 (CP000255) Staphylococcus aureus subsp. aureus USA300_FPR375... 38 3.2 13 (CP000730) Staphylococcus aureus subsp. aureus USA300_TCH151... 38 3.2 13 (BA000017) Staphylococcus aureus subsp. aureus Mu50 DNA, com... 34 3.4 14 (AP009324) Staphylococcus aureus subsp. aureus Mu3 DNA, comp... 34 3.4 14 (CP000736) Staphylococcus aureus subsp. aureus JH1, complete... 34 3.7 14 (CP000703) Staphylococcus aureus subsp. aureus JH9, complete... 34 3.7 14 (FH738030) CHO_OF5144xn03r1.ab1 CHO_OF5 Nicotiana tabacum ge... 42 4.0 2 (BX571857) Staphylococcus aureus strain MSSA476, complete ge... 34 5.9 12 (AC176650) Strongylocentrotus purpuratus clone R3-112N12, WO... 42 6.7 2 (CR388128) Zebrafish DNA sequence from clone CH211-127B17 in... 44 6.9 1 (BX537289) Zebrafish DNA sequence from clone DKEY-35M8 in li... 44 6.9 1 (BX511157) Zebrafish DNA sequence from clone DKEY-197M14 in ... 44 6.9 1 (BX000522) Zebrafish DNA sequence from clone CH211-146K11 in... 44 6.9 1 (BV497838) S217P60689FC6.T0 Noemie Pan troglodytes troglodyt... 44 6.9 1 (BV482065) rqi21e07.g1 Clint Pan troglodytes verus STS genom... 44 6.9 1 (BV477219) G591P642940FH6.T0 Clint Pan troglodytes verus STS... 44 6.9 1 (AC110183) Mus musculus chromosome 3, clone RP24-406M9, comp... 44 6.9 1 (AC206406) Pongo abelii BAC clone CH276-477J4 from chromosom... 44 6.9 1 (AC149269) Medicago truncatula chromosome 6 clone mth2-102b1... 44 6.9 1 (AC145022) Medicago truncatula clone mth2-8m24, complete seq... 44 6.9 1 (AC140547) Medicago truncatula clone mth2-17p16, complete se... 44 6.9 1 (AL591367) Human DNA sequence from clone RP11-805H4 on chrom... 44 6.9 1 (AC130963) Medicago truncatula chromosome 6 clone mth2-36c15... 44 6.9 1 (AC128331) Rattus norvegicus clone CH230-108C19, WORKING DRA... 44 6.9 1 (AC098995) Rattus norvegicus clone CH230-152O5, *** SEQUENCI... 44 6.9 1 (CT027594) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 6.9 1 (CT027581) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 6.9 1 (CT025662) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 6.9 1 (AC222041) Bos taurus clone CH240-373J18, WORKING DRAFT SEQU... 44 6.9 1 (AC196304) Myotis lucifugus clone CH235-133P22, WORKING DRAF... 44 6.9 1 (AC176577) Strongylocentrotus purpuratus clone R3-3077F09, W... 44 6.9 1 (AC176521) Strongylocentrotus purpuratus clone R3-3075E20, W... 44 6.9 1 (AC167591) Bos taurus clone CH240-196I5, WORKING DRAFT SEQUE... 44 6.9 1 (AQ921889) RPCI-23-275P13.TV RPCI-23 Mus musculus genomic cl... 44 6.9 1 (EK484256) 1095469537778 Global-Ocean-Sampling_GS-32-01-01-1... 44 6.9 1 (EK459642) 1095468983481 Global-Ocean-Sampling_GS-32-01-01-1... 44 6.9 1 (EK178836) 1095458111324 Global-Ocean-Sampling_GS-31-01-01-1... 44 6.9 1 (EJ130805) 1092343496801 Global-Ocean-Sampling_GS-27-01-01-1... 44 6.9 1 (DH549909) Rattus norvegicus DNA, BAC clone: RNB1-057O03, 5'... 44 6.9 1 (CR478588) mth2-188G6FM1 BAC end, cultivar Jemalong A17 of M... 44 6.9 1 (EH017026) USDA-FP_189468 Lysiphlebus testaceipes adult whol... 44 6.9 1
>(AU263989) Dictyostelium discoideum vegetative cDNA clone:VSD414, 5' end single read. Length = 687
Score = 674 bits (340), Expect(3) = 0.0 Identities = 340/340 (100%) Strand = Plus / Plus
Query: 172 gagatcttatgcatctggtagtgaagatgaaccatggttattagaaaaagctgatccatc 231 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 167 gagatcttatgcatctggtagtgaagatgaaccatggttattagaaaaagctgatccatc 226
Query: 232 aattcttcaagatgatcatccaggttatccattttcagaattagtagatacaacacttcc 291 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 227 aattcttcaagatgatcatccaggttatccattttcagaattagtagatacaacacttcc 286
Query: 292 agaatttagcattcaagaagtctctcgtcataattcaagagaggattgttggattatcat 351 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 287 agaatttagcattcaagaagtctctcgtcataattcaagagaggattgttggattatcat 346
Query: 352 taatgaaaaagtttacaatgtttcctcatatgtttcatctcatccaggtggtgatatgat 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 347 taatgaaaaagtttacaatgtttcctcatatgtttcatctcatccaggtggtgatatgat 406
Query: 412 tttacaaaatgcagggtggtgaatcaacaactttattcaaagaagcaccaatgacttcat 471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 407 tttacaaaatgcagggtggtgaatcaacaactttattcaaagaagcaccaatgacttcat 466
Query: 472 atgcacatgttatcatgaaagattttcatattggatattg 511 |||||||||||||||||||||||||||||||||||||||| Sbjct: 467 atgcacatgttatcatgaaagattttcatattggatattg 506
Score = 248 bits (125), Expect(3) = 0.0 Identities = 125/125 (100%) Strand = Plus / Plus
Query: 512 gtcgtcatcaaagaagatttgatggcttcactccaagacaacatgacgaagatcatcact 571 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 506 gtcgtcatcaaagaagatttgatggcttcactccaagacaacatgacgaagatcatcact 565
Query: 572 aaattcatttaatctatactactattattatttttatcatcataccaatccgaattttct 631 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 566 aaattcatttaatctatactactattattatttttatcatcataccaatccgaattttct 625
Query: 632 cattt 636 ||||| Sbjct: 626 cattt 630
Score = 186 bits (94), Expect(3) = 0.0 Identities = 94/94 (100%) Strand = Plus / Plus
Query: 12 caaaaatgatgagattttcaaagttagtcagatgtactaatagtatcatcaaatcaaacc 71 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7 caaaaatgatgagattttcaaagttagtcagatgtactaatagtatcatcaaatcaaacc 66
Query: 72 aaattcaaagatcatttatctcaacttcatttgt 105 |||||||||||||||||||||||||||||||||| Sbjct: 67 aaattcaaagatcatttatctcaacttcatttgt 100
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 703,566,253 Number of extensions: 43948180 Number of successful extensions: 3884784 Number of sequences better than 10.0: 109 Length of query: 692 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 668 Effective length of database: 97,308,875,965 Effective search space: 65002329144620 Effective search space used: 65002329144620 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.22 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
3 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |