Contig-U06503-1
Contig ID Contig-U06503-1
Contig update 2001. 8.30
Contig sequence
>Contig-U06503-1 (Contig-U06503-1Q) /CSM_Contig/Contig-U06503-1Q.Seq.d
AAACCATTAAATAATGTCATCACCACCAAATAAATCAGTGGAAATTATGG
AGGATTCAGTTATCCAAAATATTTTTGGAGAAAGTAGTGAAGAAGAATTA
GAATTTTCATATCATACATATAAACGTATTGAAAATACAAGAGAAAATAA
AGATGTCAAAGAAATTGTAGTTCGTCTATCTCAAAGACATAGTTTATGGG
CACATTTACCATGGAATGCTGGTATTGCCTTATCTGATTATTTTGATGAA
CATGTTGACTTTAAAAATAAAAATGTACTTGAACTTGGATCAGGAGCAGG
TTTACCATCATTTATAGCAGGATTGAATGGAGCAAAAAAAGTAGTTTTAA
CAGATTACCCAGACACAAATTTAATTGAAAATTTAAATTATAATATTACA
AATTCATTACCAGAGTCAGTTACAAAAGATCGTATATATGGTAAAGGACA
TCTTTGGGGTAAAGAACCTGAATCTTTATTCCAATATTTAGAGAATCCAT
CAACTGAAAAATTTGATATCATCATTCTTTCAGATCTTATTTTCAACCAC
GCAGCTCATGATAAAATGTTAATATCTTGTTCAAAATGTTTATCAGATGA
TGGCGTTATTTATGTAACATTTTCACACCATAGACCAAATAGAATTGCAA
AAGATTTAGCTTTCTTTGAAATTGCCACTGAAGAACCATACAATTTTACA
CCTGAAAAGTTTAATGAACGTAGAATGTGTGCAATGTTTGAAAATGATTT
GGGTCCTGAAGAAATTCGTTCAACTGTTTGTTTTTATACTTTAAAAAGAA
AATAATTTTAAAAATAGAAAAAAAAATAAAAAAATANANCNA

Gap no gap
Contig length 842
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 5030403
End point 5031245
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U06503
List of clone(s)

est1=VSD120E,1,843
Translated Amino Acid sequence
nh*IMSSPPNKSVEIMEDSVIQNIFGESSEEELEFSYHTYKRIENTRENKDVKEIVVRLS
QRHSLWAHLPWNAGIALSDYFDEHVDFKNKNVLELGSGAGLPSFIAGLNGAKKVVLTDYP
DTNLIENLNYNITNSLPESVTKDRIYGKGHLWGKEPESLFQYLENPSTEKFDIIILSDLI
FNHAAHDKMLISCSKCLSDDGVIYVTFSHHRPNRIAKDLAFFEIATEEPYNFTPEKFNER
RMCAMFENDLGPEEIRSTVCFYTLKRK*f*k*kkk*knxx


Translated Amino Acid sequence (All Frames)
Frame A:
kplnnvittk*isgnyggfsypkyfwrk**rririfisyi*ty*kykrk*rcqrncsssi
skt*fmgtftmecwycli*lf**tc*l*k*kct*twirsrftiiysriewskkssfnrlp
rhkfn*kfkl*yykfitrvsykrsyiw*rtslg*rt*ifipifresin*ki*yhhsfrsy
fqprss**nvnilfkmfir*wrylcniftp*tk*nckrfsfl*nch*rtiqfyt*kv**t
*nvcnv*k*fgs*rnsfnclflyfkkkiilkiekkikkxx


Frame B:
nh*IMSSPPNKSVEIMEDSVIQNIFGESSEEELEFSYHTYKRIENTRENKDVKEIVVRLS
QRHSLWAHLPWNAGIALSDYFDEHVDFKNKNVLELGSGAGLPSFIAGLNGAKKVVLTDYP
DTNLIENLNYNITNSLPESVTKDRIYGKGHLWGKEPESLFQYLENPSTEKFDIIILSDLI
FNHAAHDKMLISCSKCLSDDGVIYVTFSHHRPNRIAKDLAFFEIATEEPYNFTPEKFNER
RMCAMFENDLGPEEIRSTVCFYTLKRK*f*k*kkk*knxx


Frame C:
tik*chhhqinqwklwriqlskiflekvvkkn*nfhiihinvlkiqekikmskkl*fvyl
kdivyghiyhgmlvlpyliilmnmltlkikmylnldqeqvyhhl*qd*meqkk*f*qitq
tqi*lki*iiilqihyqsqlqkivymvkdifgvknlnlysni*rihqlknlissffqilf
sttqlmikc*ylvqnvyqmmalfm*hfhtidqielqki*lslklplknhtilhlkslmnv
ecvqclkmiwvlkkfvqlfvfil*kennfknrkknkkixx


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U06503-1 (Contig-U06503-1Q)
/CSM_Contig/Contig-U06503-1Q.Seq.d
(842 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U06503-1 (Contig-U06503-1Q) /CSM_Contig/Conti... 1526 0.0
Contig-U12401-1 (Contig-U12401-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U11770-1 (Contig-U11770-1Q) /CSM_Contig/Conti... 38 0.015
Contig-U05178-1 (Contig-U05178-1Q) /CSM_Contig/Conti... 38 0.015
Contig-U01507-1 (Contig-U01507-1Q) /CSM_Contig/Conti... 38 0.015
Contig-U12497-1 (Contig-U12497-1Q) /CSM_Contig/Conti... 36 0.059
Contig-U06141-1 (Contig-U06141-1Q) /CSM_Contig/Conti... 36 0.059
Contig-U05921-1 (Contig-U05921-1Q) /CSM_Contig/Conti... 36 0.059
Contig-U02945-1 (Contig-U02945-1Q) /CSM_Contig/Conti... 36 0.059
Contig-U01695-1 (Contig-U01695-1Q) /CSM_Contig/Conti... 36 0.059

>Contig-U06503-1 (Contig-U06503-1Q) /CSM_Contig/Contig-U06503-1Q.Seq.d
Length = 842

Score = 1526 bits (770), Expect = 0.0
Identities = 784/791 (99%)
Strand = Plus / Plus


Query: 1 aaaccattaaataatgtcatcaccaccaaataaatcagtggaaattatggaggattcagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaaccattaaataatgtcatcaccaccaaataaatcagtggaaattatggaggattcagt 60


Query: 61 tatccaaaatatttttggagaaagtagtgaagaagaattagaattttcatatcatacata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tatccaaaatatttttggagaaagtagtgaagaagaattagaattttcatatcatacata 120


Query: 121 taaacgtattgaaaatacaagagaaaataaagatgtcaaagaaattgtagttcgtctatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 taaacgtattgaaaatacaagagaaaataaagatgtcaaagaaattgtagttcgtctatc 180


Query: 181 tcaaagacatagtttatgggcacatttaccatggaatgctggtattgccttatctgatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcaaagacatagtttatgggcacatttaccatggaatgctggtattgccttatctgatta 240


Query: 241 ttttgatgaacatgttgactttaaaaataaaaatgtacttgaacttggatcaggagcagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttttgatgaacatgttgactttaaaaataaaaatgtacttgaacttggatcaggagcagg 300


Query: 301 tttaccatcatttatagcaggattgaatggagcnnnnnnngtagttttaacagattaccc 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 301 tttaccatcatttatagcaggattgaatggagcaaaaaaagtagttttaacagattaccc 360


Query: 361 agacacaaatttaattgaaaatttaaattataatattacaaattcattaccagagtcagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agacacaaatttaattgaaaatttaaattataatattacaaattcattaccagagtcagt 420


Query: 421 tacaaaagatcgtatatatggtaaaggacatctttggggtaaagaacctgaatctttatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaaaagatcgtatatatggtaaaggacatctttggggtaaagaacctgaatctttatt 480


Query: 481 ccaatatttagagaatccatcaactgaaaaatttgatatcatcattctttcagatcttat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ccaatatttagagaatccatcaactgaaaaatttgatatcatcattctttcagatcttat 540


Query: 541 tttcaaccacgcagctcatgataaaatgttaatatcttgttcaaaatgtttatcagatga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tttcaaccacgcagctcatgataaaatgttaatatcttgttcaaaatgtttatcagatga 600


Query: 601 tggcgttatttatgtaacattttcacaccatagaccaaatagaattgcaaaagatttagc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tggcgttatttatgtaacattttcacaccatagaccaaatagaattgcaaaagatttagc 660


Query: 661 tttctttgaaattgccactgaagaaccatacaattttacacctgaaaagtttaatgaacg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tttctttgaaattgccactgaagaaccatacaattttacacctgaaaagtttaatgaacg 720


Query: 721 tagaatgtgtgcaatgtttgaaaatgatttgggtcctgaagaaattcgttcaactgtttg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tagaatgtgtgcaatgtttgaaaatgatttgggtcctgaagaaattcgttcaactgtttg 780


Query: 781 tttttatactt 791
|||||||||||
Sbjct: 781 tttttatactt 791


>Contig-U12401-1 (Contig-U12401-1Q) /CSM_Contig/Contig-U12401-1Q.Seq.d
Length = 1746

Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus


Query: 380 aatttaaattataatattacaaatt 404
|||||||||| ||||||||||||||
Sbjct: 1611 aatttaaattgtaatattacaaatt 1635


Score = 36.2 bits (18), Expect = 0.059
Identities = 18/18 (100%)
Strand = Plus / Minus


Query: 380 aatttaaattataatatt 397
||||||||||||||||||
Sbjct: 1620 aatttaaattataatatt 1603


>Contig-U11770-1 (Contig-U11770-1Q) /CSM_Contig/Contig-U11770-1Q.Seq.d
Length = 1595

Score = 38.2 bits (19), Expect = 0.015
Identities = 28/31 (90%)
Strand = Plus / Plus


Query: 365 acaaatttaattgaaaatttaaattataata 395
|||||||||||| | ||||||||| ||||||
Sbjct: 685 acaaatttaattaataatttaaataataata 715


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,124
Number of Sequences: 6905
Number of extensions: 17124
Number of successful extensions: 2227
Number of sequences better than 10.0: 210
length of query: 842
length of database: 5,674,871
effective HSP length: 16
effective length of query: 826
effective length of database: 5,564,391
effective search space: 4596186966
effective search space used: 4596186966
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11. 8
Homology vs DNA
Query= Contig-U06503-1 (Contig-U06503-1Q) /CSM_Contig/Contig-U06503-1Q.Seq.d
(842 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU263503) Dictyostelium discoideum vegetative cDNA clone:VS... 896 0.0 2
(AU263502) Dictyostelium discoideum vegetative cDNA clone:VS... 660 0.0 2
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 32 0.059 14
(BH137960) ENTNX53TF Entamoeba histolytica Sheared DNA Entam... 38 0.12 2
(EI441875) PV_GBa0037P19.r PV_GBa Phaseolus vulgaris genomic... 34 0.40 2
(BH132681) ENTPA82TF Entamoeba histolytica Sheared DNA Entam... 46 0.46 2
(CU927944) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.54 1
(ER502091) 1093015403880 Global-Ocean-Sampling_GS-35-01-01-1... 48 0.54 1
(ER469259) 1092963942994 Global-Ocean-Sampling_GS-35-01-01-1... 48 0.54 1
(ER454653) 1092963863705 Global-Ocean-Sampling_GS-35-01-01-1... 48 0.54 1
(ER452317) 1092963854298 Global-Ocean-Sampling_GS-35-01-01-1... 48 0.54 1
(EJ687909) 1092955206321 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.54 1
(DH071880) Oryzias latipes Fosmid clone:GOLWFno133_c23, forw... 48 0.54 1
(CV624004) mdw32b03.b1 Hc6AR_Y Ajellomyces capsulatus cDNA 3... 48 0.54 1
(EJ318432) 1095403326927 Global-Ocean-Sampling_GS-27-01-01-1... 38 0.81 3
(CU855556) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.91 5
(AC092502) Homo sapiens chromosome 3 clone RP11-204J18, comp... 46 0.95 3
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 34 1.0 15
(AL049830) Human chromosome 14 DNA sequence BAC R-829H16 of ... 42 1.1 5
(AC162649) Bos taurus clone CH240-122O2, WORKING DRAFT SEQUE... 34 1.1 8
(AL589883) Arabidopsis thaliana DNA chromosome 5, BAC clone ... 40 1.3 4
(EK152548) 1095456059323 Global-Ocean-Sampling_GS-31-01-01-1... 40 1.4 2
(BV642575) S215P60240RA11.T0 Clara Pan troglodytes troglodyt... 36 1.5 2
(EC825691) SME00002750 esmbsro2 Sawyeria marylandensis cDNA,... 36 1.5 2
(AL844509) Plasmodium falciparum chromosome 13. 34 1.5 18
(EK090510) 1092961215362 Global-Ocean-Sampling_GS-31-01-01-1... 40 1.5 2
(AC193804) Heliconius erato clone BBAM-38A20, WORKING DRAFT ... 38 1.5 5
(CD000073) AGENCOURT_13642977 NIH_MGC_186 Homo sapiens cDNA ... 44 1.5 2
(EJ587506) 1092961027519 Global-Ocean-Sampling_GS-29-01-01-1... 44 1.6 2
(EJ536849) 1092955264719 Global-Ocean-Sampling_GS-29-01-01-1... 44 1.7 2
(AC147713) Medicago truncatula clone mth2-138b11, complete s... 36 1.8 5
(DJ025883) Genome-wide DNA marker of Saccharomyces cerevisiae. 44 1.9 11
(AC009021) Homo sapiens chromosome 16 clone RP11-105C19, com... 38 1.9 4
(CP000552) Prochlorococcus marinus str. MIT 9515, complete g... 40 2.0 13
(AC164702) Mus musculus BAC clone RP23-402H19 from chromosom... 46 2.1 1
(CP000500) Pichia stipitis CBS 6054 chromosome 6, complete s... 46 2.1 1
(AC160367) Bos taurus clone CH240-74F9, WORKING DRAFT SEQUEN... 46 2.1 1
(AC155708) Bos taurus clone CH240-33A10, *** SEQUENCING IN P... 46 2.1 1
(AC155706) Bos taurus clone CH240-33A16, *** SEQUENCING IN P... 46 2.1 1
(AC151993) Mus musculus chromosome 10 clone RP23-191I4, WORK... 46 2.1 1
(AC138362) Mus musculus chromosome 5 clone RP23-80H23 map 5,... 46 2.1 1
(AC138332) Mus musculus chromosome 10 clone RP23-62C17 map 1... 46 2.1 1
(CU467099) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.1 1
(CU179711) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.1 1
(AC224326) Bos taurus clone CH240-489D10, WORKING DRAFT SEQU... 46 2.1 1
(AC219427) Bos taurus clone CH240-33A16, WORKING DRAFT SEQUE... 46 2.1 1
(AC219426) Bos taurus clone CH240-33A10, WORKING DRAFT SEQUE... 46 2.1 1
(AC175094) Bos taurus clone CH240-461A8, WORKING DRAFT SEQUE... 46 2.1 1
(EJ760011) 1092963119964 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.1 1
(EJ310992) 1095390209625 Global-Ocean-Sampling_GS-27-01-01-1... 46 2.1 1
(DX537425) GH_MBb0048A05r GH_MBb Gossypium hirsutum genomic ... 46 2.1 1
(DX404307) GR_Sa0002E13.b1 Gossypium raimondii WGS library G... 46 2.1 1
(CW986554) KBrH012P09F KBrH, Brassica rapa HindIII BAC libra... 46 2.1 1
(CW983730) KBrH009C23F KBrH, Brassica rapa HindIII BAC libra... 46 2.1 1
(EG253866) MSAM145116_2094_0587 LCM-dissected maize inbred l... 46 2.1 1
(FE858900) CAFX601.fwd CAFX Pichia stipitis oxygen limited x... 46 2.1 1
(FE857562) CAFW546.fwd CAFW Pichia stipitis oxygen limited x... 46 2.1 1
(FE851031) CAFP1499.fwd CAFP Pichia stipitis aerobic xylose ... 46 2.1 1
(FE844220) CAFH1811.fwd CAFH Pichia stipitis aerobic dextros... 46 2.1 1
(AE017332) Mycoplasma hyopneumoniae 232, complete genome. 46 2.1 1
(AE017244) Mycoplasma hyopneumoniae 7448, complete genome. 46 2.1 1
(AE017243) Mycoplasma hyopneumoniae J, complete genome. 46 2.1 1
(EK024569) 1092955357016 Global-Ocean-Sampling_GS-31-01-01-1... 32 2.1 3
(AC149243) Otolemur garnettii clone CH256-179G11, WORKING DR... 36 2.2 8
(EJ130552) 1092343452159 Global-Ocean-Sampling_GS-27-01-01-1... 28 2.3 4
(AC022672) Homo sapiens chromosome 4 clone RP11-684N3 map 4,... 36 2.6 7
(AC209039) Populus trichocarpa clone POP009-N17, complete se... 36 2.7 4
(DQ927303) Tetrahymena malaccensis strain MP75 mitochondrion... 38 2.8 5
(AC186466) Callicebus moloch clone LB5-221I15, WORKING DRAFT... 40 2.8 3
(DE431159) Bombyx mori genomic DNA, Fosmid clone:GBMFno16_a1... 36 2.8 2
(DE429733) Bombyx mori genomic DNA, Fosmid clone:GBMFno14_b1... 36 3.0 2
(EA699052) Sequence 77931 from patent US 7365185. 36 3.4 3
(AC125649) Rattus norvegicus clone CH230-309G16, *** SEQUENC... 38 3.4 7
(AC208278) Nomascus leucogenys leucogenys clone CH271-32P20,... 40 3.5 4
(AP009596) Solanum lycopersicum DNA, chromosome 8, clone: C0... 42 3.9 3
(AC225950) Cavia porcellus clone CH234-312J16, WORKING DRAFT... 32 4.0 2
(CR855865) Zebrafish DNA sequence from clone DKEY-267L2 in l... 38 4.1 4
(AC142203) Homo sapiens chromosome 16 clone RP11-627O23, WOR... 38 4.1 3
(CR955004) Medicago truncatula chromosome 5 clone mte1-9e19,... 38 4.8 5
(CK636904) UI-M-HO0-cnp-i-07-0-UI.r1 NIH_BMAP_HO0 Mus muscul... 36 5.1 2
(AM453072) Vitis vinifera contig VV78X046382.24, whole genom... 36 5.3 3
(AC216643) Solanum lycopersicum chromosome 6 clone C06HBa001... 38 5.3 5
(AC142200) Homo sapiens chromosome 16 clone RP11-380G24, WOR... 38 5.4 3
(ER550206) 1093016219173 Global-Ocean-Sampling_GS-35-01-01-1... 34 5.5 2
(EI310684) GM_WBc0041A08.f GM_WBc Glycine max genomic clone ... 38 5.5 2
(EJ209941) 1092345429625 Global-Ocean-Sampling_GS-27-01-01-1... 40 5.6 2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 34 5.7 13
(EK572007) 1095521083015 Global-Ocean-Sampling_GS-32-01-01-1... 40 5.7 2
(EK579027) 1095521387798 Global-Ocean-Sampling_GS-32-01-01-1... 40 6.0 2
(AC006604) Caenorhabditis elegans cosmid C07F11, complete se... 36 6.1 4
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s... 34 6.1 9
(BX408320) human full-length cDNA 5-PRIME end of clone CS0DH... 40 6.1 2
(CW956359) TcB46.4_D02_T7 Tribolium BAC library Tribolium ca... 42 6.4 2
(CD450972) USDA-FP_103003 Adult Alate Brown Citrus Aphid Tox... 30 6.4 3
(AC020675) Homo sapiens clone RP11-3P6, WORKING DRAFT SEQUEN... 36 6.5 4
(DU059878) 40620 Tomato HindIII BAC Library Solanum lycopers... 40 6.5 2
(EA375954) Sequence 24777 from patent US 7314974. 38 7.0 2
(AC215942) Populus trichocarpa clone POP054-D10, complete se... 36 8.0 4
(DE288911) Bombyx mori genomic DNA, BAC clone:BES_018_H08. 40 8.2 2
(DQ088991) Notechis scutatus L-amino acid oxidase precursor,... 44 8.4 1

>(AU263503) Dictyostelium discoideum vegetative cDNA clone:VSD120,
3' end single read.
Length = 796

Score = 896 bits (452), Expect(2) = 0.0
Identities = 452/452 (100%)
Strand = Plus / Plus


Query: 341 gtagttttaacagattacccagacacaaatttaattgaaaatttaaattataatattaca 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gtagttttaacagattacccagacacaaatttaattgaaaatttaaattataatattaca 353


Query: 401 aattcattaccagagtcagttacaaaagatcgtatatatggtaaaggacatctttggggt 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aattcattaccagagtcagttacaaaagatcgtatatatggtaaaggacatctttggggt 413


Query: 461 aaagaacctgaatctttattccaatatttagagaatccatcaactgaaaaatttgatatc 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 aaagaacctgaatctttattccaatatttagagaatccatcaactgaaaaatttgatatc 473


Query: 521 atcattctttcagatcttattttcaaccacgcagctcatgataaaatgttaatatcttgt 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 atcattctttcagatcttattttcaaccacgcagctcatgataaaatgttaatatcttgt 533


Query: 581 tcaaaatgtttatcagatgatggcgttatttatgtaacattttcacaccatagaccaaat 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tcaaaatgtttatcagatgatggcgttatttatgtaacattttcacaccatagaccaaat 593


Query: 641 agaattgcaaaagatttagctttctttgaaattgccactgaagaaccatacaattttaca 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 agaattgcaaaagatttagctttctttgaaattgccactgaagaaccatacaattttaca 653


Query: 701 cctgaaaagtttaatgaacgtagaatgtgtgcaatgtttgaaaatgatttgggtcctgaa 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 cctgaaaagtttaatgaacgtagaatgtgtgcaatgtttgaaaatgatttgggtcctgaa 713


Query: 761 gaaattcgttcaactgtttgtttttatacttt 792
||||||||||||||||||||||||||||||||
Sbjct: 714 gaaattcgttcaactgtttgtttttatacttt 745

Score = 561 bits (283), Expect(2) = 0.0
Identities = 285/286 (99%)
Strand = Plus / Plus


Query: 48 tggaggattcagttatccaaaatatttttggagaaagtagtgaagaagaattagaatttt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggaggattcagttatccaaaatatttttggagaaagtagtgaagaagaattagaatttt 60


Query: 108 catatcatacatataaacgtattgaaaatacaagagaaaataaagatgtcaaagaaattg 167
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 61 catatcatacatataaacgtattgaaaatncaagagaaaataaagatgtcaaagaaattg 120


Query: 168 tagttcgtctatctcaaagacatagtttatgggcacatttaccatggaatgctggtattg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tagttcgtctatctcaaagacatagtttatgggcacatttaccatggaatgctggtattg 180


Query: 228 ccttatctgattattttgatgaacatgttgactttaaaaataaaaatgtacttgaacttg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ccttatctgattattttgatgaacatgttgactttaaaaataaaaatgtacttgaacttg 240


Query: 288 gatcaggagcaggtttaccatcatttatagcaggattgaatggagc 333
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gatcaggagcaggtttaccatcatttatagcaggattgaatggagc 286

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,127,147,451
Number of extensions: 74667021
Number of successful extensions: 6617492
Number of sequences better than 10.0: 176
Length of query: 842
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 818
Effective length of database: 97,308,875,965
Effective search space: 79598660539370
Effective search space used: 79598660539370
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.22
Homology vs Protein
Query= Contig-U06503-1 (Contig-U06503-1Q) /CSM_Contig/Contig-U06503-1Q.Seq.d
(842 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q05874) RecName: Full=Putative nicotinamide N-methyltransferase... 176 8e-43
(Q9UT28) RecName: Full=Putative nicotinamide N-methyltransferase... 175 1e-42
(Q6FJ22) RecName: Full=Putative nicotinamide N-methyltransferase... 172 9e-42
FN392321_1030(FN392321|pid:none) Pichia pastoris GS115 chromosom... 169 1e-40
(Q6BKI8) RecName: Full=Putative nicotinamide N-methyltransferase... 157 5e-37
FM992695_338(FM992695|pid:none) Candida dubliniensis CD36 chromo... 156 7e-37
CU928171_635(CU928171|pid:none) Kluyveromyces thermotolerans str... 155 1e-36
(Q5KDV2) RecName: Full=Putative nicotinamide N-methyltransferase... 152 1e-35
CP000502_237(CP000502|pid:none) Pichia stipitis CBS 6054 chromos... 152 1e-35
(Q5A013) RecName: Full=Putative nicotinamide N-methyltransferase... 150 7e-35
(Q74ZB5) RecName: Full=Putative nicotinamide N-methyltransferase... 143 6e-33
(Q5BAD0) RecName: Full=Putative nicotinamide N-methyltransferase... 115 2e-24
CU633895_175(CU633895|pid:none) Podospora anserina genomic DNA c... 111 3e-23
EU515145_12(EU515145|pid:none) Epichloe festucae strain Fl1 hypo... 109 1e-22
AP007171_329(AP007171|pid:none) Aspergillus oryzae RIB40 genomic... 69 2e-10
AL513467_31(AL513467|pid:none) Neurospora crassa DNA linkage gro... 65 2e-09
(Q5VZV1) RecName: Full=UPF0567 protein C13orf39; &AL158063_3(AL... 64 5e-09
T23154(T23154) hypothetical protein K01A11.2 - Caenorhabditis el... 63 1e-08
(Q8BLU2) RecName: Full=UPF0567 protein C13orf39 homolog; &AK041... 63 1e-08
(A6QP81) RecName: Full=UPF0567 protein C13orf39 homolog; &BC149... 62 2e-08
(Q55DL2) RecName: Full=UPF0558 protein; 58 4e-07
(A6NDL7) RecName: Full=UPF0567 protein ENSP00000298105; 57 1e-06
CP001323_553(CP001323|pid:none) Micromonas sp. RCC299 chromosome... 56 1e-06
AY800617_1(AY800617|pid:none) Arabidopsis thaliana clone H000000... 55 2e-06
BC076050_1(BC076050|pid:none) Danio rerio zgc:92518, mRNA (cDNA ... 55 3e-06
AP007159_542(AP007159|pid:none) Aspergillus oryzae RIB40 genomic... 55 4e-06
(Q8WXB1) RecName: Full=Protein FAM119A; AltName: Full=Hepatocell... 54 6e-06
AM425292_4(AM425292|pid:none) Vitis vinifera contig VV78X015037.... 54 8e-06
AF455817_1(AF455817|pid:none) Homo sapiens hepatocellular carcin... 53 1e-05
(Q28IN4) RecName: Full=Protein FAM119B; &BC157300_1(BC157300|pi... 53 1e-05
CP000584_4(CP000584|pid:none) Ostreococcus lucimarinus CCE9901 c... 52 2e-05
(A4FV98) RecName: Full=Protein FAM119B; &BC123899_1(BC123899|pi... 52 2e-05
BC026952_1(BC026952|pid:none) Mus musculus family with sequence ... 51 5e-05
AC010556_1(AC010556|pid:none) Arabidopsis thaliana chromosome 1 ... 51 5e-05
AC012396_25(AC012396|pid:none) Arabidopsis thaliana chromosome 1... 51 5e-05
CP000581_112(CP000581|pid:none) Ostreococcus lucimarinus CCE9901... 51 5e-05
(Q8IXQ9) RecName: Full=UPF0516 protein C12orf72; &AK290248_1(AK... 51 5e-05
AY800615_1(AY800615|pid:none) Arabidopsis thaliana clone H000000... 51 5e-05
CR940348_217(CR940348|pid:none) Theileria annulata strain Ankara... 50 7e-05
(Q9CQL0) RecName: Full=Protein FAM119A; &AK009673_1(AK009673|pi... 50 7e-05
AK292276_1(AK292276|pid:none) Homo sapiens cDNA FLJ77367 complet... 49 2e-04
CR382134_330(CR382134|pid:none) Debaryomyces hansenii strain CBS... 49 3e-04
(A4IGU3) RecName: Full=Protein FAM119A; &BC135248_1(BC135248|pi... 49 3e-04
AE014134_562(AE014134|pid:none) Drosophila melanogaster chromoso... 48 3e-04
(Q5BLD8) RecName: Full=Protein FAM119A; &BC090479_1(BC090479|pi... 48 5e-04
CP000496_36(CP000496|pid:none) Pichia stipitis CBS 6054 chromoso... 47 6e-04
CP001101_550(CP001101|pid:none) Chlorobium phaeobacteroides BS1,... 47 6e-04
AK132096_1(AK132096|pid:none) Mus musculus 12 days embryo head c... 47 8e-04
(Q80ZM3) RecName: Full=UPF0516 protein C12orf72 homolog; &BC048... 47 8e-04
(Q6P7Q0) RecName: Full=UPF0516 protein C12orf72 homolog; &BC061... 47 0.001
CR522870_3082(CR522870|pid:none) Desulfotalea psychrophila LSv54... 47 0.001
AY086588_1(AY086588|pid:none) Arabidopsis thaliana clone 25991 m... 47 0.001
AY072417_1(AY072417|pid:none) Arabidopsis thaliana unknown prote... 47 0.001
BC134209_1(BC134209|pid:none) Danio rerio UPF0516 protein, mRNA ... 46 0.001
CR954204_285(CR954204|pid:none) Ostreococcus tauri strain OTTH05... 46 0.001
CP001108_505(CP001108|pid:none) Prosthecochloris aestuarii DSM 2... 46 0.002
CP001141_84(CP001141|pid:none) Phaeodactylum tricornutum CCAP 10... 46 0.002
CP001099_544(CP001099|pid:none) Chlorobaculum parvum NCIB 8327, ... 46 0.002
T08749(T08749)hypothetical protein DKFZp586D0919.1 - human (frag... 46 0.002
(Q5RE14) RecName: Full=Protein FAM119A; &CR857725_1(CR857725|pi... 46 0.002
EF081922_1(EF081922|pid:none) Picea sitchensis clone WS02711_A05... 45 0.002
(A4FV42) RecName: Full=Protein FAM119A; &BC123706_1(BC123706|pi... 45 0.003
AM494960_11(AM494960|pid:none) Leishmania braziliensis chromosom... 45 0.003
CP001576_118(CP001576|pid:none) Micromonas sp. RCC299 chromosome... 45 0.003
BC161637_1(BC161637|pid:none) Xenopus tropicalis hypothetical pr... 45 0.003
CP001159_210(CP001159|pid:none) Thalassiosira pseudonana CCMP133... 45 0.004
AK068478_1(AK068478|pid:none) Oryza sativa Japonica Group cDNA c... 44 0.007
(P40389) RecName: Full=Rapid response to glucose protein 1; &AL... 44 0.009
FM992689_271(FM992689|pid:none) Candida dubliniensis CD36 chromo... 44 0.009
CP001576_255(CP001576|pid:none) Micromonas sp. RCC299 chromosome... 43 0.011
CT005262_11(CT005262|pid:none) Leishmania major strain Friedlin,... 43 0.011
BC093344_1(BC093344|pid:none) Danio rerio protein arginine methy... 43 0.011
CP000246_2308(CP000246|pid:none) Clostridium perfringens ATCC 13... 43 0.011
CU928180_444(CU928180|pid:none) Kluyveromyces thermotolerans str... 43 0.011
EF083640_1(EF083640|pid:none) Picea sitchensis clone WS02814_K10... 43 0.011
CU633438_472(CU633438|pid:none) Podospora anserina genomic DNA c... 43 0.015
AE014186_418(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 42 0.025
AL049862_13(AL049862|pid:none) Arabidopsis thaliana DNA chromoso... 42 0.025
CP001324_560(CP001324|pid:none) Micromonas sp. RCC299 chromosome... 42 0.033
CP001072_357(CP001072|pid:none) Helicobacter pylori Shi470, comp... 42 0.033
CP000478_448(CP000478|pid:none) Syntrophobacter fumaroxidans MPO... 41 0.043
CP000241_362(CP000241|pid:none) Helicobacter pylori HPAG1, compl... 41 0.043
BC083266_1(BC083266|pid:none) Danio rerio family with sequence s... 41 0.056
CP001217_356(CP001217|pid:none) Helicobacter pylori P12, complet... 41 0.056
AK118046_1(AK118046|pid:none) Arabidopsis thaliana At3g50850 mRN... 40 0.073
(Q58338) RecName: Full=Uncharacterized protein MJ0928; AltName: ... 40 0.073
CP000590_198(CP000590|pid:none) Ostreococcus lucimarinus CCE9901... 40 0.073
AE001439_336(AE001439|pid:none) Helicobacter pylori J99, complet... 40 0.095
AM910995_243(AM910995|pid:none) Plasmodium knowlesi strain H chr... 40 0.095
AK118788_1(AK118788|pid:none) Arabidopsis thaliana At1g63855 mRN... 40 0.095
(O70467) RecName: Full=Protein arginine N-methyltransferase 3; ... 40 0.12
CP001331_280(CP001331|pid:none) Micromonas sp. RCC299 chromosome... 39 0.16
CP001142_305(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1... 39 0.16
AK155236_1(AK155236|pid:none) Mus musculus NOD-derived CD11c +ve... 39 0.16
FN357719_9(FN357719|pid:none) Schistosoma mansoni genome sequenc... 39 0.16
AK010534_1(AK010534|pid:none) Mus musculus ES cells cDNA, RIKEN ... 39 0.16
BC008128_1(BC008128|pid:none) Mus musculus protein arginine N-me... 39 0.16
FN357719_8(FN357719|pid:none) Schistosoma mansoni genome sequenc... 39 0.16
AK031738_1(AK031738|pid:none) Mus musculus 14 days embryo thymus... 39 0.16
CR380959_300(CR380959|pid:none) Candida glabrata strain CBS138 c... 39 0.21
AB063050_1(AB063050|pid:none) Macaca fascicularis brain cDNA clo... 39 0.21
CP001173_334(CP001173|pid:none) Helicobacter pylori G27, complet... 39 0.21
AE016814_378(AE016814|pid:none) Ashbya gossypii (= Eremothecium ... 39 0.21
AC116979_73(AC116979|pid:none) Dictyostelium discoideum chromoso... 39 0.21
CP000503_1039(CP000503|pid:none) Shewanella sp. W3-18-1, complet... 39 0.28
(Q9CZ09) RecName: Full=UPF0558 protein C1orf156 homolog; &AK139... 39 0.28
CP000607_1398(CP000607|pid:none) Chlorobium phaeovibrioides DSM ... 39 0.28
CR954201_111(CR954201|pid:none) Ostreococcus tauri strain OTTH05... 38 0.36
CP000383_3224(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 38 0.36
BX842633_14(BX842633|pid:none) Neurospora crassa DNA linkage gro... 38 0.36
(Q6DC04) RecName: Full=Histone-arginine methyltransferase CARM1;... 38 0.36
AE000511_1069(AE000511|pid:none) Helicobacter pylori 26695, comp... 38 0.36
CP000584_265(CP000584|pid:none) Ostreococcus lucimarinus CCE9901... 38 0.36
(Q6DJF8) RecName: Full=UPF0563 protein C17orf95 homolog; &BC075... 38 0.36
(Q4KM84) RecName: Full=UPF0558 protein C1orf156 homolog; &BC098... 38 0.36
(Q8C436) RecName: Full=Uncharacterized protein C14orf138 homolog... 38 0.36
AX452897_1(AX452897|pid:none) Sequence 1 from Patent WO0244358. ... 38 0.47
EU974317_1(EU974317|pid:none) Zea mays clone 445972 hypothetical... 38 0.47
AB201117_1(AB201117|pid:none) Rattus norvegicus CARM1-v4 mRNA fo... 38 0.47
BC147870_1(BC147870|pid:none) Bos taurus protein arginine methyl... 38 0.47
FM992689_57(FM992689|pid:none) Candida dubliniensis CD36 chromos... 38 0.47
CP000487_1530(CP000487|pid:none) Campylobacter fetus subsp. fetu... 38 0.47
BC106370_1(BC106370|pid:none) Xenopus laevis hypothetical protei... 38 0.47
(Q4AE70) RecName: Full=Histone-arginine methyltransferase CARM1;... 38 0.47
(Q86X55) RecName: Full=Histone-arginine methyltransferase CARM1;... 38 0.47
AB201116_1(AB201116|pid:none) Rattus norvegicus CARM1-v3 mRNA fo... 38 0.47
AK158757_1(AK158757|pid:none) Mus musculus visual cortex cDNA, R... 38 0.47
CR954210_199(CR954210|pid:none) Ostreococcus tauri strain OTTH05... 38 0.47
CT005254_73(CT005254|pid:none) Leishmania major strain Friedlin,... 37 0.62
AF059531_1(AF059531|pid:none) Homo sapiens protein arginine N-me... 37 0.62
CR954204_575(CR954204|pid:none) Ostreococcus tauri strain OTTH05... 37 0.62
AK300591_1(AK300591|pid:none) Homo sapiens cDNA FLJ61411 complet... 37 0.62
AB173526_1(AB173526|pid:none) Macaca fascicularis brain cDNA clo... 37 0.62
CP001172_772(CP001172|pid:none) Acinetobacter baumannii AB307-02... 37 0.62
BC019339_1(BC019339|pid:none) Homo sapiens protein arginine meth... 37 0.62
(Q5XK84) RecName: Full=Histone-arginine methyltransferase CARM1;... 37 0.80
CP000589_63(CP000589|pid:none) Ostreococcus lucimarinus CCE9901 ... 37 0.80
CP000681_2844(CP000681|pid:none) Shewanella putrefaciens CN-32, ... 37 0.80
CR382129_137(CR382129|pid:none) Yarrowia lipolytica strain CLIB1... 37 0.80
EF055449_1(EF055449|pid:none) Xenopus laevis coactivator-associa... 37 0.80
BX294136_3(BX294136|pid:none) Rhodopirellula baltica SH 1 comple... 37 0.80
CP000716_550(CP000716|pid:none) Thermosipho melanesiensis BI429,... 37 1.0
(Q9NR22) RecName: Full=Protein arginine N-methyltransferase 8; ... 37 1.0
CP000903_1345(CP000903|pid:none) Bacillus weihenstephanensis KBA... 37 1.0
AK026786_1(AK026786|pid:none) Homo sapiens cDNA: FLJ23133 fis, c... 37 1.0
AK105521_1(AK105521|pid:none) Oryza sativa Japonica Group cDNA c... 37 1.0
BC060250_1(BC060250|pid:none) Mus musculus protein arginine N-me... 37 1.0
AE005673_2567(AE005673|pid:none) Caulobacter crescentus CB15, co... 37 1.0
CP000863_2918(CP000863|pid:none) Acinetobacter baumannii ACICU, ... 37 1.0
DQ892381_1(DQ892381|pid:none) Synthetic construct clone IMAGE:10... 37 1.0
AF263539_1(AF263539|pid:none) Homo sapiens arginine N-methyltran... 37 1.0
(Q6PAK3) RecName: Full=Protein arginine N-methyltransferase 8; ... 37 1.0
AE014187_240(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 37 1.0
AY820755_1(AY820755|pid:none) Toxoplasma gondii chromosome Ia pr... 36 1.4
EU020677_1(EU020677|pid:none) Narceus americanus clone Nam3059f1... 36 1.4
CP001197_5(CP001197|pid:none) Desulfovibrio vulgaris str. 'Miyaz... 36 1.4
BA000023_2121(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA,... 36 1.4
CP001328_666(CP001328|pid:none) Micromonas sp. RCC299 chromosome... 36 1.4
CP001186_2408(CP001186|pid:none) Bacillus cereus G9842, complete... 36 1.4
CP000712_537(CP000712|pid:none) Pseudomonas putida F1, complete ... 36 1.4
EU020684_1(EU020684|pid:none) Tanystylum orbiculare clone Tor305... 36 1.4
CP001186_1332(CP001186|pid:none) Bacillus cereus G9842, complete... 36 1.4
AP007154_384(AP007154|pid:none) Aspergillus oryzae RIB40 genomic... 36 1.4
EU020678_1(EU020678|pid:none) Nebalia hessleri clone Nhe3059f1 p... 36 1.4
CU928171_433(CU928171|pid:none) Kluyveromyces thermotolerans str... 36 1.4
(O01503) RecName: Full=UPF0516 protein C37A2.6; &U97194_6(U9719... 36 1.4
BT070430_1(BT070430|pid:none) Picea sitchensis clone WS02729_D08... 36 1.4
(P34412) RecName: Full=Uncharacterized protein F22B7.9; &L12018... 36 1.4
BX294027_43(BX294027|pid:none) Neurospora crassa DNA linkage gro... 36 1.4
CP001074_2226(CP001074|pid:none) Rhizobium etli CIAT 652, comple... 36 1.8
AK072530_1(AK072530|pid:none) Oryza sativa Japonica Group cDNA c... 36 1.8
AM270409_3(AM270409|pid:none) Aspergillus niger contig An18c0170... 36 1.8
CP000076_5442(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 36 1.8
CU457741_10(CU457741|pid:none) Caenorhabditis elegans Cosmid C42... 36 1.8
CR860001_1(CR860001|pid:none) Pongo abelii mRNA; cDNA DKFZp459J1... 36 1.8
CP001078_850(CP001078|pid:none) Clostridium botulinum E3 str. Al... 36 1.8
(P0C5J1) RecName: Full=Protein FAM86B2; 36 1.8
CR954206_24(CR954206|pid:none) Ostreococcus tauri strain OTTH059... 36 1.8
AK023982_1(AK023982|pid:none) Homo sapiens cDNA FLJ13920 fis, cl... 36 1.8
CR855211_4(CR855211|pid:none) Oryza sativa genomic DNA, chromoso... 36 1.8
AM270021_18(AM270021|pid:none) Aspergillus niger contig An02c026... 36 1.8
CP000962_3354(CP000962|pid:none) Clostridium botulinum A3 str. L... 35 2.3
CP001185_1369(CP001185|pid:none) Thermosipho africanus TCF52B, c... 35 2.3
AK298185_1(AK298185|pid:none) Homo sapiens cDNA FLJ60751 complet... 35 2.3
CP001323_729(CP001323|pid:none) Micromonas sp. RCC299 chromosome... 35 2.3
(P38347) RecName: Full=Uncharacterized protein YBR271W; &AY6926... 35 2.3
AM486261_1(AM486261|pid:none) Vitis vinifera contig VV78X011738.... 35 2.3
EU020680_1(EU020680|pid:none) Podura aquatica clone Paq3059f1 pu... 35 2.3
CP000386_811(CP000386|pid:none) Rubrobacter xylanophilus DSM 994... 35 2.3
CR382122_284(CR382122|pid:none) Kluyveromyces lactis strain NRRL... 35 2.3
BC149565_1(BC149565|pid:none) Bos taurus hypothetical LOC540184,... 35 2.3
CP001323_927(CP001323|pid:none) Micromonas sp. RCC299 chromosome... 35 2.3
(A2BSS6) RecName: Full=Ribosomal protein L11 methyltransferase; ... 35 2.3
EF084759_1(EF084759|pid:none) Picea sitchensis clone WS0274_J05 ... 35 2.3
(A8GM00) RecName: Full=Ribosomal RNA small subunit methyltransfe... 35 2.3
CP000609_1603(CP000609|pid:none) Methanococcus maripaludis C5, c... 35 3.1
AL117265_3(AL117265|pid:none) Oryza sativa genomic DNA, chromoso... 35 3.1
(Q8R6G7) RecName: Full=Ribosomal protein L11 methyltransferase; ... 35 3.1
FN392321_572(FN392321|pid:none) Pichia pastoris GS115 chromosome... 35 3.1
(B0BW04) RecName: Full=Ribosomal RNA small subunit methyltransfe... 35 3.1
(Q4A936) RecName: Full=Dimethyladenosine transferase; E... 35 3.1
CP000599_7(CP000599|pid:none) Ostreococcus lucimarinus CCE9901 c... 35 3.1
AM920436_1202(AM920436|pid:none) Penicillium chrysogenum Wiscons... 35 3.1
(Q4A775) RecName: Full=Dimethyladenosine transferase; E... 35 3.1
(Q4UN89) RecName: Full=Ribosomal RNA small subunit methyltransfe... 35 3.1
AP008215_1111(AP008215|pid:none) Oryza sativa (japonica cultivar... 35 3.1
(A8GQL8) RecName: Full=Ribosomal RNA small subunit methyltransfe... 35 3.1
CP000745_1044(CP000745|pid:none) Methanococcus maripaludis C7, c... 35 3.1
AP009510_366(AP009510|pid:none) Uncultured Termite group 1 bacte... 35 3.1
EU020681_1(EU020681|pid:none) Speleonectes tulumensis clone Stu3... 35 4.0
CR954201_180(CR954201|pid:none) Ostreococcus tauri strain OTTH05... 35 4.0
EF677030_1(EF677030|pid:none) Picea sitchensis clone WS02760_G21... 35 4.0
CP001324_393(CP001324|pid:none) Micromonas sp. RCC299 chromosome... 35 4.0
(Q5ZZN4) RecName: Full=Dimethyladenosine transferase; E... 35 4.0
BT002972_1(BT002972|pid:none) Arabidopsis thaliana clone RAFL15-... 35 4.0
AM270062_8(AM270062|pid:none) Aspergillus niger contig An04c0010... 35 4.0
CP000743_108(CP000743|pid:none) Methanococcus aeolicus Nankai-3,... 35 4.0
BX842649_85(BX842649|pid:none) Bdellovibrio bacteriovorus comple... 35 4.0
DQ017481_1(DQ017481|pid:none) Plasmodium falciparum leucine-rich... 35 4.0
CR382131_748(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 35 4.0
AE002098_1310(AE002098|pid:none) Neisseria meningitidis MC58, co... 34 5.2
BC106275_1(BC106275|pid:none) Xenopus laevis arginine methyltran... 34 5.2
S24460(S41039;S24460)probable membrane protein R08D7.4 - Caenorh... 34 5.2
(Q5RJL2) RecName: Full=UPF0563 protein C17orf95 homolog; &BC086... 34 5.2
AM421808_1206(AM421808|pid:none) Neisseria meningitidis serogrou... 34 5.2
AM920428_272(AM920428|pid:none) Penicillium chrysogenum Wisconsi... 34 5.2
BC074614_1(BC074614|pid:none) Xenopus tropicalis protein arginin... 34 5.2
CP001275_1045(CP001275|pid:none) Thermomicrobium roseum DSM 5159... 34 5.2
AY272042_1(AY272042|pid:none) Emericella nidulans RmtA (rmtA) ge... 34 5.2
CR762238_1(CR762238|pid:none) Xenopus tropicalis finished cDNA, ... 34 5.2
AY375304_1(AY375304|pid:none) Emericella nidulans protein methyl... 34 5.2
CP000847_1200(CP000847|pid:none) Rickettsia akari str. Hartford,... 34 5.2
AE008917_171(AE008917|pid:none) Brucella melitensis 16M chromoso... 34 5.2
AE016818_582(AE016818|pid:none) Ashbya gossypii (= Eremothecium ... 34 5.2
AM747721_2466(AM747721|pid:none) Burkholderia cenocepacia J2315 ... 34 5.2
AK304660_1(AK304660|pid:none) Homo sapiens cDNA FLJ55610 complet... 34 6.8
(Q5WZ79) RecName: Full=Ribosomal protein L11 methyltransferase; ... 34 6.8
(Q4V7W8) RecName: Full=UPF0516 protein C12orf72 homolog; &BC097... 34 6.8
CP001050_2536(CP001050|pid:none) Neisseria gonorrhoeae NCCP11945... 34 6.8
CP000269_3136(CP000269|pid:none) Janthinobacterium sp. Marseille... 34 6.8
AK295973_1(AK295973|pid:none) Homo sapiens cDNA FLJ60588 complet... 34 6.8
(Q9JWE6) RecName: Full=3-demethylubiquinone-9 3-methyltransferas... 34 6.8
(Q9NZ06) RecName: Full=Protein arginine N-methyltransferase 1; ... 34 6.8
AB170133_1(AB170133|pid:none) Macaca fascicularis brain cDNA clo... 34 6.8
(Q92JI2) RecName: Full=Ribosomal RNA small subunit methyltransfe... 34 6.8
CU928169_669(CU928169|pid:none) Kluyveromyces thermotolerans str... 34 6.8
CP001074_4124(CP001074|pid:none) Rhizobium etli CIAT 652, comple... 34 6.8
BT034192_1(BT034192|pid:none) Zea mays full-length cDNA clone ZM... 34 6.8
BX950229_54(BX950229|pid:none) Methanococcus maripaludis strain ... 34 6.8
AY775289_1(AY775289|pid:none) Homo sapiens protein arginine meth... 34 6.8
CP001227_313(CP001227|pid:none) Rickettsia peacockii str. Rustic... 34 6.8
CR940347_206(CR940347|pid:none) Theileria annulata strain Ankara... 34 6.8
AF222689_2(AF222689|pid:none) Homo sapiens protein arginine N-me... 34 6.8
AE016877_1314(AE016877|pid:none) Bacillus cereus ATCC 14579, com... 34 6.8
CP000615_203(CP000615|pid:none) Burkholderia vietnamiensis G4 ch... 34 6.8
(A9M0C4) RecName: Full=3-demethylubiquinone-9 3-methyltransferas... 34 6.8
CP000152_395(CP000152|pid:none) Burkholderia sp. 383 chromosome ... 34 6.8
AL157959_1395(AL157959|pid:none) Neisseria meningitidis serogrou... 34 6.8
Y10807_1(Y10807|pid:none) H.sapiens mRNA for arginine methyltran... 34 6.8
AF428364_1(AF428364|pid:none) Arabidopsis thaliana At2g43320/T1O... 34 6.8
DQ239683_1(DQ239683|pid:none) Ovis aries clone clone TO-UP-O16-1... 34 6.8
Y10805_1(Y10805|pid:none) H.sapiens mRNA for arginine methyltran... 34 6.8
BC122344_1(BC122344|pid:none) Danio rerio zgc:153596, mRNA (cDNA... 34 6.8
BC149511_1(BC149511|pid:none) Bos taurus hypothetical LOC509540,... 34 6.8
CP001401_937(CP001401|pid:none) Sulfolobus islandicus M.16.27, c... 34 6.8
CP000107_394(CP000107|pid:none) Ehrlichia canis str. Jake, compl... 34 6.8
(Q9VH48) RecName: Full=Probable histone-arginine methyltransfera... 33 8.9
T40755(T40755)arginine n-methyltransferase - fission yeast (Sch... 33 8.9
(P34284) RecName: Full=Uncharacterized F-box/LRR-repeat protein ... 33 8.9
CP000526_2091(CP000526|pid:none) Burkholderia mallei SAVP1 chrom... 33 8.9
CP000932_796(CP000932|pid:none) Campylobacter lari RM2100, compl... 33 8.9
CP000570_2491(CP000570|pid:none) Burkholderia pseudomallei 668 c... 33 8.9
(A1CW67) RecName: Full=Glucose-repressible alcohol dehydrogenase... 33 8.9
AM181176_5358(AM181176|pid:none) Pseudomonas fluorescens SBW25 c... 33 8.9
AC152551_1(AC152551|pid:none) Medicago truncatula clone mth2-24d... 33 8.9
CR940348_862(CR940348|pid:none) Theileria annulata strain Ankara... 33 8.9
AM263198_1323(AM263198|pid:none) Listeria welshimeri serovar 6b ... 33 8.9
CP001408_2604(CP001408|pid:none) Burkholderia pseudomallei MSHR3... 33 8.9
CP001600_484(CP001600|pid:none) Edwardsiella ictaluri 93-146, co... 33 8.9
F84864(F84864)hypothetical protein At2g43320 [imported] - Arabid... 33 8.9
CP000546_3111(CP000546|pid:none) Burkholderia mallei NCTC 10229 ... 33 8.9
CR382129_12(CR382129|pid:none) Yarrowia lipolytica strain CLIB12... 33 8.9
CP000512_4094(CP000512|pid:none) Acidovorax citrulli AAC00-1, co... 33 8.9
CP001096_251(CP001096|pid:none) Rhodopseudomonas palustris TIE-1... 33 8.9
BT004851_1(BT004851|pid:none) Drosophila melanogaster RE68504 fu... 33 8.9
L14745_2(L14745|pid:none) Caenorhabditis elegans cosmid C02F5, c... 33 8.9
AM502230_85(AM502230|pid:none) Leishmania infantum chromosome 12. 33 8.9
(Q2KIJ2) RecName: Full=UPF0558 protein C1orf156 homolog; &BC112... 33 8.9
AC002335_5(AC002335|pid:none) Arabidopsis thaliana chromosome 2 ... 33 8.9
AP007151_624(AP007151|pid:none) Aspergillus oryzae RIB40 genomic... 33 8.9
(O13648) RecName: Full=Ribosomal protein arginine N-methytransfe... 33 8.9
(A8F0G4) RecName: Full=Ribosomal RNA small subunit methyltransfe... 33 8.9
CT005251_132(CT005251|pid:none) Leishmania major strain Friedlin... 33 8.9
AE014185_212(AE014185|pid:none) Plasmodium falciparum 3D7 chromo... 33 8.9

>(Q05874) RecName: Full=Putative nicotinamide N-methyltransferase;
EC=2.1.1.1; &AY693038_1(AY693038|pid:none)
&S50370(S50370) &U17243_8(U17243|pid:none)
Length = 261

Score = 176 bits (446), Expect = 8e-43
Identities = 98/229 (42%), Positives = 139/229 (60%), Gaps = 4/229 (1%)
Frame = +2

Query: 119 YKRIENTRENK-DVKEIVVRLSQRHSLWAHLPWNAGIALSDYFDEHVDF-KNKNVLELGS 292
Y+R T+E+K DVK+I +RL LW HL WNAGI +++ D H + K K VLELG+
Sbjct: 32 YQRSHITKESKSDVKDIKLRLVGTSPLWGHLLWNAGIYTANHLDSHPELIKGKTVLELGA 91

Query: 293 GAGLPSFIAGLNGAKKVVLTDYPDTNLIENLNYNITNSLPESVTKDRIYGKGHLWGKEPE 472
A LPS I LNGA+ VV TDYPD +L++N++YNI +++PE + + +G++WG +
Sbjct: 92 AAALPSVICALNGAQMVVSTDYPDPDLMQNIDYNIKSNVPEDF--NNVSTEGYIWGNDYS 149

Query: 473 SLFQYLE--NPSTEKFDIIILSDLIFNHAAHDKMLISCSKCLSDDGVIYVTFSHHRPNRI 646
L ++E + KFD+IILSDL+FNH H K+L + L++ G V FS HRP +
Sbjct: 150 PLLAHIEKIGNNNGKFDLIILSDLVFNHTEHHKLLQTTKDLLAEKGQALVVFSPHRPKLL 209

Query: 647 AKDLAFFEIATEEPYNFTPEKFNERRMCAMFENDLGPEEIRSTVCFYTL 793
KDL FFE+A E ++ P+ MF+ D E+RS V Y L
Sbjct: 210 EKDLEFFELAKNE-FHLVPQLIEMVNWKPMFDEDEETIEVRSRVYAYYL 257

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,298,051,221
Number of extensions: 25515003
Number of successful extensions: 72721
Number of sequences better than 10.0: 294
Number of HSP's gapped: 72602
Number of HSP's successfully gapped: 295
Length of query: 280
Length of database: 1,040,966,779
Length adjustment: 127
Effective length of query: 153
Effective length of database: 634,022,584
Effective search space: 97005455352
Effective search space used: 97005455352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.66 gvh: 0.33 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: extracellular, including cell wall
4.0 %: mitochondrial

>> prediction for Contig-U06503-1 is cyt

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0