| Contig-U06499-1 |
| Contig ID |
Contig-U06499-1 |
| Contig update |
2001. 8.30 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
434 |
| Chromosome number (1..6, M) |
4 |
| Chromosome length |
5430582 |
| Start point |
4829104 |
| End point |
4829538 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
1 |
| Number of EST |
1 |
| Link to clone list |
U06499 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11. 8 |
| Homology vs DNA |
Query= Contig-U06499-1 (Contig-U06499-1Q) /CSM_Contig/Contig-U06499-1Q.Seq.d
(434 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AU262839) Dictyostelium discoideum vegetative cDNA clone:VS... 767 0.0 1
(EJ319293) 1095403340580 Global-Ocean-Sampling_GS-27-01-01-1... 62 3e-06 2
(EK316020) 1095462413063 Global-Ocean-Sampling_GS-31-01-01-1... 62 2e-05 1
(EK057369) 1092960038775 Global-Ocean-Sampling_GS-31-01-01-1... 54 5e-04 2
(EK160841) 1095458030228 Global-Ocean-Sampling_GS-31-01-01-1... 54 5e-04 2
(EJ424296) 1093012254092 Global-Ocean-Sampling_GS-28-01-01-1... 54 5e-04 2
(EJ404394) 1093012079341 Global-Ocean-Sampling_GS-28-01-01-1... 54 6e-04 2
(EK333934) 1095467033959 Global-Ocean-Sampling_GS-31-01-01-1... 54 6e-04 2
(EJ765390) 1092963204314 Global-Ocean-Sampling_GS-30-02-01-1... 54 0.004 1
(EJ764019) 1092963168570 Global-Ocean-Sampling_GS-30-02-01-1... 54 0.004 1
(EJ407513) 1093012107054 Global-Ocean-Sampling_GS-28-01-01-1... 54 0.004 1
(EJ219361) 1092351190901 Global-Ocean-Sampling_GS-27-01-01-1... 54 0.004 1
(AC027119) Homo sapiens chromosome 3 clone RP11-113L10 map 3... 38 0.011 7
(CS468856) Sequence 47 from Patent EP1748080. 40 0.028 4
(CS419333) Sequence 47 from Patent WO2006094836. 40 0.028 4
(EK158067) 1095458013418 Global-Ocean-Sampling_GS-31-01-01-1... 46 0.030 2
(EK410121) 1095505158302 Global-Ocean-Sampling_GS-31-01-01-1... 50 0.066 1
(EK330308) 1095467022012 Global-Ocean-Sampling_GS-31-01-01-1... 50 0.066 1
(EK300914) 1095462364233 Global-Ocean-Sampling_GS-31-01-01-1... 50 0.066 1
(EK292121) 1095462334007 Global-Ocean-Sampling_GS-31-01-01-1... 50 0.066 1
(BM643876) 17000687313204 A.Gam.ad.cDNA1 Anopheles gambiae c... 50 0.066 1
(BM634154) 17000687508738 A.Gam.ad.cDNA1 Anopheles gambiae c... 50 0.066 1
(BM621273) 17000687446439 A.Gam.ad.cDNA1 Anopheles gambiae c... 50 0.066 1
(BM596501) 17000687479278 A.Gam.ad.cDNA.blood1 Anopheles gam... 50 0.066 1
(BM580362) 17000687242479 A.Gam.ad.cDNA.blood1 Anopheles gam... 50 0.066 1
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 38 0.072 7
(AC084197) Caenorhabditis elegans cosmid Y73B6BL, complete s... 36 0.075 8
(CS468855) Sequence 46 from Patent EP1748080. 40 0.095 4
(CS419332) Sequence 46 from Patent WO2006094836. 40 0.095 4
(ER545173) 1093016163888 Global-Ocean-Sampling_GS-35-01-01-1... 46 0.11 2
(DQ146364) Anopheles funestus mitochondrion, complete genome. 46 0.11 3
(L04272) Anopheles quadrimaculatus A strain Orlando mitochon... 46 0.11 3
(BX895347) Arabidopsis thaliana T-DNA flanking sequence GK-7... 32 0.14 3
(DQ471381) Eurosta cribrata 16S ribosomal RNA gene, partial ... 44 0.16 2
(AC015010) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 48 0.16 2
(Z68117) Caenorhabditis elegans Cosmid F45E6. 36 0.17 2
(AF043693) Caenorhabditis elegans cosmid C34B2, complete seq... 38 0.17 2
(AE014135) Drosophila melanogaster chromosome 4, complete se... 48 0.26 1
(AC011250) Drosophila melanogaster clone BACR21B19, complete... 48 0.26 1
(AC010839) Drosophila melanogaster clone BACN19N21, complete... 48 0.26 1
(AC192262) Zea mays chromosome 3 clone ZMMBBb-606H9; ZMMBBb0... 48 0.26 1
(CC732813) OGWCR83TH ZM_0.7_1.5_KB Zea mays genomic clone ZM... 48 0.26 1
(BZ421462) if81c08.b2 WGS-ZmaysF (DH5a methyl filtered) Zea ... 48 0.26 1
(AC046188) Homo sapiens chromosome 4 clone RP11-342E13 map 4... 34 0.31 7
(AC108669) Homo sapiens chromosome 3 clone RP11-13F21, *** S... 42 0.40 3
(BK006337) TPA_exp: Drosophila persimilis mitochondrion, com... 46 0.41 2
(AR516557) Sequence 21517 from patent US 6703491. 36 0.54 2
(AR501275) Sequence 6235 from patent US 6703491. 36 0.54 2
(AC185722) Bos taurus clone RP42-269L1, WORKING DRAFT SEQUEN... 42 0.54 3
(CT009484) M.truncatula DNA sequence from clone MTH2-69D3 on... 40 0.56 4
(CU467805) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 0.56 2
(AC172391) Strongylocentrotus purpuratus clone R3-14O19, WOR... 34 0.59 5
(Z75546) Caenorhabditis elegans Cosmid R05D11. 36 0.59 4
(AG442006) Mus musculus molossinus DNA, clone:MSMg01-323K06.... 38 0.65 2
(ER570425) 1093015790396 Global-Ocean-Sampling_GS-36-01-01-2... 34 0.73 2
(AM446763) Vitis vinifera contig VV78X156042.2, whole genome... 28 0.73 4
(AC141759) Apis mellifera clone CH224-60D17, WORKING DRAFT S... 36 0.82 3
(AC187275) Gallus gallus BAC clone CH261-7I3 from chromosome... 46 1.0 1
(AC186358) Gallus gallus BAC clone CH261-99P4 from chromosom... 46 1.0 1
(X01078) Aedes albopictus mit-gene for large ribosomal subun... 46 1.0 1
(U39378) Gymnocarena mexicana 16S ribosomal RNA gene, partia... 46 1.0 1
(EU494536) Zaprionus lineosus voucher 103961 16S ribosomal R... 46 1.0 1
(EU494535) Scaptodrosophila pattersoni voucher 105497 16S ri... 46 1.0 1
(EU494534) Scaptodrosophila lebanonensis voucher 105639 16S ... 46 1.0 1
(EU494531) Samoaia leonensis voucher 109375 16S ribosomal RN... 46 1.0 1
(EU494528) Scaptomyza palmae voucher 106323 16S ribosomal RN... 46 1.0 1
(EU494524) Scaptomyza remota voucher 108519 16S ribosomal RN... 46 1.0 1
(EU494512) Drosophila micromyia voucher 109454 16S ribosomal... 46 1.0 1
(EU494510) Drosophila kambysellisi voucher 105683 16S riboso... 46 1.0 1
(EU494507) Drosophila hirtitibia voucher 109429 16S ribosoma... 46 1.0 1
(EU494504) Drosophila flavibasis voucher 109443 16S ribosoma... 46 1.0 1
(EU494484) Drosophila pseudoobscura voucher 105505 16S ribos... 46 1.0 1
(EU494465) Drosophila paramelanica voucher 109372 16S riboso... 46 1.0 1
(EU494464) Drosophila micromelanica voucher 109371 16S ribos... 46 1.0 1
(EU494463) Drosophila melanica voucher 105499 16S ribosomal ... 46 1.0 1
(EU494452) Drosophila nannoptera voucher 105440 16S ribosoma... 46 1.0 1
(EU494451) Drosophila acanthoptera voucher 105622 16S riboso... 46 1.0 1
(EU494450) Drosophila macroptera voucher 109393 16S ribosoma... 46 1.0 1
(EU494432) Drosophila funebris voucher 103952 16S ribosomal ... 46 1.0 1
(EU189433) Drosophila persimilis strain 14011-0111.49 16S ri... 46 1.0 1
(DQ471412) Trupanea amoena 16S ribosomal RNA gene, partial s... 46 1.0 1
(DQ287368) Anopheles funestus 16S ribosomal RNA, partial seq... 46 1.0 1
(DQ201970) Drosophila acanthoptera voucher AMCC 101823 16S r... 46 1.0 1
(AY573136) Piophila nigriceps 16S ribosomal RNA gene, partia... 46 1.0 1
(AY573131) Prochyliza xanthostoma 16S ribosomal RNA gene, pa... 46 1.0 1
(AY573119) Lotophila atra 16S ribosomal RNA gene, partial se... 46 1.0 1
(AJ422212) Lucilia sericata complete mitochondrial genome. 46 1.0 1
(AC162546) Bos taurus clone CH240-122I19, WORKING DRAFT SEQU... 46 1.0 1
(AC224360) Bos taurus clone CH240-487O6, WORKING DRAFT SEQUE... 46 1.0 1
(AC222130) Bos taurus clone CH240-370O2, WORKING DRAFT SEQUE... 46 1.0 1
(AC182297) Bos taurus clone CH240-487O7, WORKING DRAFT SEQUE... 46 1.0 1
(ER947112) CH260-89H14_T7 CHORI-260 Meleagris gallopavo geno... 46 1.0 1
(EK562423) 1095521014856 Global-Ocean-Sampling_GS-32-01-01-1... 46 1.0 1
(EK249389) 1095460271308 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.0 1
(DE518312) Bombyx mori genomic DNA, Fosmid clone:GBMFno136_l... 46 1.0 1
(DE186153) Bombyx mori genomic DNA, Fosmid clone:RO0341-L15_R. 46 1.0 1
(CT346999) Sus scrofa genomic clone CH242-42D7, genomic surv... 46 1.0 1
(CL352115) RPCI44_313N6.r RPCI-44 Sus scrofa genomic clone R... 46 1.0 1
(CL352102) RPCI44_313L4.r RPCI-44 Sus scrofa genomic clone R... 46 1.0 1
(EC082817) 124448 CK01 Drosophila melanogaster cDNA clone CK... 46 1.0 1
>(AU262839) Dictyostelium discoideum vegetative cDNA clone:VSC853,
3' end single read.
Length = 435
Score = 767 bits (387), Expect = 0.0
Identities = 393/393 (100%)
Strand = Plus / Plus
Query: 1 gaaagaatttcaatcatttcaaatcatttaacaatgtcagatacatcatcaaatttaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaaagaatttcaatcatttcaaatcatttaacaatgtcagatacatcatcaaatttaaaa 60
Query: 61 acacattcaacaatatcaacacatgttttagatacaaccactggattaccagcaatggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acacattcaacaatatcaacacatgttttagatacaaccactggattaccagcaatggat 120
Query: 121 atgaaagttatattngaaaaagataatggtaatggtcaatatataacaataaaaagtgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgaaagttatattngaaaaagataatggtaatggtcaatatataacaataaaaagtgtt 180
Query: 181 ttaaccaattctgatggtagatcaagagaatttccagaattngaaaatggaatttataaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttaaccaattctgatggtagatcaagagaatttccagaattngaaaatggaatttataaa 240
Query: 241 attactttctttacagaagaatactttaaaaatcaaaatttttcaaattatttctttcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 attactttctttacagaagaatactttaaaaatcaaaatttttcaaattatttctttcca 300
Query: 301 aaagcaagtgttgattttataattaatcaagcaaaacattatcatgtgcctttattatta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaagcaagtgttgattttataattaatcaagcaaaacattatcatgtgcctttattatta 360
Query: 361 tcaccatatagcttttcaacttatagaggtagt 393
|||||||||||||||||||||||||||||||||
Sbjct: 361 tcaccatatagcttttcaacttatagaggtagt 393
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 598,099,101
Number of extensions: 40467298
Number of successful extensions: 3593733
Number of sequences better than 10.0: 378
Length of query: 434
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 411
Effective length of database: 93,106,754,628
Effective search space: 38266876152108
Effective search space used: 38266876152108
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
|
| protein update |
2009. 6.22 |
| Homology vs Protein |
Query= Contig-U06499-1 (Contig-U06499-1Q) /CSM_Contig/Contig-U06499-1Q.Seq.d
(434 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CP001172_1208(CP001172|pid:none) Acinetobacter baumannii AB307-0... 94 1e-18
(P76341) RecName: Full=5-hydroxyisourate hydrolase; Sho... 92 7e-18
FM180568_2081(FM180568|pid:none) Escherichia coli 0127:H6 E2348/... 91 2e-17
AE005674_2017(AE005674|pid:none) Shigella flexneri 2a str. 301, ... 91 2e-17
CP001063_780(CP001063|pid:none) Shigella boydii CDC 3083-94, com... 89 4e-17
CP000964_4025(CP000964|pid:none) Klebsiella pneumoniae 342, comp... 88 8e-17
AM167904_2046(AM167904|pid:none) Bordetella avium 197N complete ... 88 8e-17
CP000647_477(CP000647|pid:none) Klebsiella pneumoniae subsp. pne... 88 1e-16
CP000653_63(CP000653|pid:none) Enterobacter sp. 638, complete ge... 88 1e-16
AL111168_671(AL111168|pid:none) Campylobacter jejuni subsp. jeju... 87 2e-16
CP000569_806(CP000569|pid:none) Actinobacillus pleuropneumoniae ... 87 2e-16
AP008957_2115(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 86 3e-16
AM420293_6546(AM420293|pid:none) Saccharopolyspora erythraea NRR... 85 7e-16
CP000323_1909(CP000323|pid:none) Psychrobacter cryohalolentis K5... 85 9e-16
AM181176_191(AM181176|pid:none) Pseudomonas fluorescens SBW25 co... 83 3e-15
CP001341_3409(CP001341|pid:none) Arthrobacter chlorophenolicus A... 83 3e-15
BT081265_1(BT081265|pid:none) Caligus clemensi clone ccle-evs-51... 82 4e-15
CP001326_647(CP001326|pid:none) Micromonas sp. RCC299 chromosome... 82 6e-15
BT076835_1(BT076835|pid:none) Caligus rogercresseyi clone crog-e... 82 6e-15
CP000884_2114(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 82 6e-15
CR543861_1078(CR543861|pid:none) Acinetobacter sp. ADP1 complete... 82 6e-15
AP006618_5263(AP006618|pid:none) Nocardia farcinica IFM 10152 DN... 82 8e-15
BT076973_1(BT076973|pid:none) Caligus rogercresseyi clone crog-e... 81 1e-14
AP009152_1976(AP009152|pid:none) Kocuria rhizophila DC2201 DNA, ... 80 2e-14
(Q8ZQ52) RecName: Full=5-hydroxyisourate hydrolase; Sho... 80 2e-14
CP000826_935(CP000826|pid:none) Serratia proteamaculans 568, com... 80 2e-14
CP000026_1633(CP000026|pid:none) Salmonella enterica subsp. ente... 80 2e-14
CP001127_1086(CP001127|pid:none) Salmonella enterica subsp. ente... 80 2e-14
(Q4VYA5) RecName: Full=5-hydroxyisourate hydrolase; Sho... 80 2e-14
CP000511_5197(CP000511|pid:none) Mycobacterium vanbaalenii PYR-1... 80 3e-14
CP001172_128(CP001172|pid:none) Acinetobacter baumannii AB307-02... 79 5e-14
(Q06S87) RecName: Full=5-hydroxyisourate hydrolase; Sho... 79 5e-14
CP000076_192(CP000076|pid:none) Pseudomonas fluorescens Pf-5, co... 79 5e-14
CU234118_812(CU234118|pid:none) Bradyrhizobium sp. ORS278,comple... 79 6e-14
CP000083_4727(CP000083|pid:none) Colwellia psychrerythraea 34H, ... 78 8e-14
CP000094_200(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, c... 78 1e-13
CP000388_2411(CP000388|pid:none) Pseudoalteromonas atlantica T6c... 77 1e-13
CP000512_1093(CP000512|pid:none) Acidovorax citrulli AAC00-1, co... 77 1e-13
CU468230_3336(CU468230|pid:none) Acinetobacter baumannii str. SD... 77 2e-13
CP000539_1100(CP000539|pid:none) Acidovorax sp. JS42, complete g... 77 2e-13
AB110190_1(AB110190|pid:none) Oryza sativa Japonica Group mRNA f... 77 2e-13
(Q9LVM5) RecName: Full=Uric acid degradation bifunctional protei... 77 2e-13
CP001002_75(CP001002|pid:none) Methylobacterium radiotolerans JC... 76 4e-13
CP000249_831(CP000249|pid:none) Frankia sp. CcI3, complete genome. 75 5e-13
CP000820_5560(CP000820|pid:none) Frankia sp. EAN1pec, complete g... 75 5e-13
BA000030_2026(BA000030|pid:none) Streptomyces avermitilis MA-468... 75 5e-13
(Q98CI7) RecName: Full=5-hydroxyisourate hydrolase; Sho... 75 7e-13
AM746676_5888(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 75 7e-13
CR543861_3180(CR543861|pid:none) Acinetobacter sp. ADP1 complete... 75 7e-13
AY509004_150(AY509004|pid:none) Salmonella enterica subsp. enter... 74 2e-12
(Q8YFU1) RecName: Full=5-hydroxyisourate hydrolase; Sho... 74 2e-12
AE008917_1428(AE008917|pid:none) Brucella melitensis 16M chromos... 74 2e-12
CP000090_2414(CP000090|pid:none) Ralstonia eutropha JMP134 chrom... 74 2e-12
BC141764_1(BC141764|pid:none) Xenopus laevis hypothetical protei... 74 2e-12
CP000758_449(CP000758|pid:none) Ochrobactrum anthropi ATCC 49188... 73 3e-12
AL591985_1178(AL591985|pid:none) Sinorhizobium meliloti 1021 pla... 73 3e-12
DQ056143_4(DQ056143|pid:none) Coprinellus disseminatus strain C3... 72 5e-12
CP000264_2609(CP000264|pid:none) Jannaschia sp. CCS1, complete g... 72 5e-12
(Q92VB9) RecName: Full=5-hydroxyisourate hydrolase 1; S... 72 5e-12
(Q8G228) RecName: Full=5-hydroxyisourate hydrolase; Sho... 72 5e-12
CU633749_967(CU633749|pid:none) Cupriavidus taiwanensis str. LMG... 72 5e-12
CP000480_1262(CP000480|pid:none) Mycobacterium smegmatis str. MC... 72 6e-12
CP000758_688(CP000758|pid:none) Ochrobactrum anthropi ATCC 49188... 72 6e-12
CP000509_1109(CP000509|pid:none) Nocardioides sp. JS614, complet... 72 6e-12
CP000633_2432(CP000633|pid:none) Agrobacterium vitis S4 chromoso... 72 6e-12
T24096(T24096) hypothetical protein R09H10.3 - Caenorhabditis el... 72 6e-12
EF583981_2(EF583981|pid:none) Uncultured haloarchaeon clone fosm... 72 6e-12
AM260479_999(AM260479|pid:none) Ralstonia eutropha H16 chromosom... 72 8e-12
CU458896_2905(CU458896|pid:none) Mycobacterium abscessus chromos... 72 8e-12
CP000739_903(CP000739|pid:none) Sinorhizobium medicae WSM419 pla... 72 8e-12
AP009385_1900(AP009385|pid:none) Burkholderia multivorans ATCC 1... 71 1e-11
CP000868_1305(CP000868|pid:none) Burkholderia multivorans ATCC 1... 71 1e-11
CP000926_3823(CP000926|pid:none) Pseudomonas putida GB-1, comple... 71 1e-11
CP000739_1028(CP000739|pid:none) Sinorhizobium medicae WSM419 pl... 71 1e-11
EU016580_41(EU016580|pid:none) Uncultured marine microorganism H... 71 1e-11
CP000830_2668(CP000830|pid:none) Dinoroseobacter shibae DFL 12, ... 71 1e-11
AM747720_2025(AM747720|pid:none) Burkholderia cenocepacia J2315 ... 70 2e-11
CP001025_1851(CP001025|pid:none) Burkholderia ambifaria MC40-6 c... 70 2e-11
CP000830_3189(CP000830|pid:none) Dinoroseobacter shibae DFL 12, ... 70 2e-11
BT039942_1(BT039942|pid:none) Zea mays full-length cDNA clone ZM... 70 2e-11
CP000362_3862(CP000362|pid:none) Roseobacter denitrificans OCh 1... 70 2e-11
BT041775_1(BT041775|pid:none) Zea mays full-length cDNA clone ZM... 70 2e-11
AK226943_1(AK226943|pid:none) Arabidopsis thaliana mRNA for hypo... 70 2e-11
CP001068_2223(CP001068|pid:none) Ralstonia pickettii 12J chromos... 70 2e-11
CP000680_2737(CP000680|pid:none) Pseudomonas mendocina ymp, comp... 70 2e-11
CP000390_2803(CP000390|pid:none) Mesorhizobium sp. BNC1, complet... 70 3e-11
CP000376_443(CP000376|pid:none) Silicibacter sp. TM1040 mega pla... 70 3e-11
CP001150_2952(CP001150|pid:none) Rhodobacter sphaeroides KD131 c... 69 5e-11
D88957(D88957)protein ZK697.8 [imported] - Caenorhabditis elegans 69 5e-11
CP000076_4306(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 69 5e-11
(O44578) RecName: Full=Probable 5-hydroxyisourate hydrolase ZK69... 69 5e-11
CP000380_632(CP000380|pid:none) Burkholderia cenocepacia AU 1054... 69 5e-11
CP000542_4297(CP000542|pid:none) Verminephrobacter eiseniae EF01... 69 7e-11
CP000316_1408(CP000316|pid:none) Polaromonas sp. JS666, complete... 68 1e-10
CP000490_1065(CP000490|pid:none) Paracoccus denitrificans PD1222... 68 1e-10
A97639(A97639) hypothetical protein AGR_C_4223 [imported] - Agro... 68 1e-10
CP000661_3008(CP000661|pid:none) Rhodobacter sphaeroides ATCC 17... 67 1e-10
CP000325_382(CP000325|pid:none) Mycobacterium ulcerans Agy99, co... 67 1e-10
CP000570_2360(CP000570|pid:none) Burkholderia pseudomallei 668 c... 67 2e-10
BX571965_2133(BX571965|pid:none) Burkholderia pseudomallei strai... 67 2e-10
EU966862_1(EU966862|pid:none) Zea mays clone 297807 unknown mRNA. 67 2e-10
CP000124_2496(CP000124|pid:none) Burkholderia pseudomallei 1710b... 67 2e-10
CU695239_225(CU695239|pid:none) Ralstonia solanacearum strain Mo... 67 3e-10
CP000438_3580(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA... 67 3e-10
CP000386_2775(CP000386|pid:none) Rubrobacter xylanophilus DSM 99... 67 3e-10
(Q9I3J5) RecName: Full=5-hydroxyisourate hydrolase; Sho... 66 3e-10
AE017346_321(AE017346|pid:none) Cryptococcus neoformans var. neo... 66 3e-10
AY657415_1(AY657415|pid:none) Synthetic construct Peudomonas aer... 66 3e-10
CU914168_1942(CU914168|pid:none) Ralstonia solanacearum strain I... 66 4e-10
CP000058_1692(CP000058|pid:none) Pseudomonas syringae pv. phaseo... 65 6e-10
CU928180_304(CU928180|pid:none) Kluyveromyces thermotolerans str... 65 6e-10
AP009384_789(AP009384|pid:none) Azorhizobium caulinodans ORS 571... 65 6e-10
CP000358_396(CP000358|pid:none) Deinococcus geothermalis DSM 113... 65 6e-10
AP006725_2450(AP006725|pid:none) Klebsiella pneumoniae NTUH-K204... 65 6e-10
CP001013_1095(CP001013|pid:none) Leptothrix cholodnii SP-6, comp... 65 7e-10
CP000075_1809(CP000075|pid:none) Pseudomonas syringae pv. syring... 65 1e-09
CP000285_67(CP000285|pid:none) Chromohalobacter salexigens DSM 3... 64 2e-09
CP000155_1050(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 64 2e-09
EU884423_7(EU884423|pid:none) Klebsiella oxytoca M5al (hypo)xant... 64 2e-09
CR382123_510(CR382123|pid:none) Kluyveromyces lactis strain NRRL... 64 2e-09
AP006627_3723(AP006627|pid:none) Bacillus clausii KSM-K16 DNA, c... 64 2e-09
(O32142) RecName: Full=5-hydroxyisourate hydrolase; Sho... 63 3e-09
H70016(H70016) conserved hypothetical protein yunM - Bacillus su... 63 3e-09
CP000270_2493(CP000270|pid:none) Burkholderia xenovorans LB400 c... 63 4e-09
(Q9A545) RecName: Full=5-hydroxyisourate hydrolase; Sho... 63 4e-09
AM236080_3585(AM236080|pid:none) Rhizobium leguminosarum bv. vic... 63 4e-09
AM039952_303(AM039952|pid:none) Xanthomonas campestris pv. vesic... 62 6e-09
CP000628_2513(CP000628|pid:none) Agrobacterium radiobacter K84 c... 62 6e-09
CP000781_3261(CP000781|pid:none) Xanthobacter autotrophicus Py2,... 62 6e-09
CP001074_3318(CP001074|pid:none) Rhizobium etli CIAT 652, comple... 62 8e-09
CR382136_159(CR382136|pid:none) Debaryomyces hansenii strain CBS... 62 8e-09
CP001157_2047(CP001157|pid:none) Azotobacter vinelandii DJ, comp... 61 1e-08
FM992689_759(FM992689|pid:none) Candida dubliniensis CD36 chromo... 61 1e-08
AM260480_979(AM260480|pid:none) Ralstonia eutropha H16 chromosom... 61 1e-08
CP001191_2849(CP001191|pid:none) Rhizobium leguminosarum bv. tri... 61 1e-08
FN392319_1111(FN392319|pid:none) Pichia pastoris GS115 chromosom... 60 2e-08
CP000498_373(CP000498|pid:none) Pichia stipitis CBS 6054 chromos... 60 2e-08
AE008922_278(AE008922|pid:none) Xanthomonas campestris pv. campe... 60 3e-08
AM889285_1992(AM889285|pid:none) Gluconacetobacter diazotrophicu... 59 4e-08
CP000473_356(CP000473|pid:none) Solibacter usitatus Ellin6076, c... 59 4e-08
CP001189_210(CP001189|pid:none) Gluconacetobacter diazotrophicus... 59 4e-08
CU640366_1150(CU640366|pid:none) Podospora anserina genomic DNA ... 59 5e-08
CU633750_792(CU633750|pid:none) Cupriavidus taiwanensis str. LMG... 59 5e-08
CT573213_1417(CT573213|pid:none) Frankia alni str. ACN14A chromo... 57 2e-07
CP001298_1941(CP001298|pid:none) Methylobacterium chloromethanic... 57 3e-07
BT046788_1(BT046788|pid:none) Salmo salar clone ssal-evf-507-147... 55 1e-06
(P31779) RecName: Full=Transthyretin; AltName: Full=Prealbumin; ... 54 1e-06
CP000394_1243(CP000394|pid:none) Granulibacter bethesdensis CGDN... 54 1e-06
CP001349_5590(CP001349|pid:none) Methylobacterium nodulans ORS 2... 54 2e-06
EU073714_1(EU073714|pid:none) Perca flavescens transthyretin pre... 53 4e-06
BT046762_1(BT046762|pid:none) Salmo salar clone ssal-evf-521-131... 52 5e-06
DQ855961_1(DQ855961|pid:none) Lampetra appendix transthyretin (T... 52 5e-06
CP000034_967(CP000034|pid:none) Shigella dysenteriae Sd197, comp... 52 6e-06
CP000937_1331(CP000937|pid:none) Francisella philomiragia subsp.... 50 2e-05
(P42204) RecName: Full=Transthyretin; AltName: Full=Prealbumin; ... 50 2e-05
FJ426113_1(FJ426113|pid:none) Epinephelus coioides transthyretin... 50 2e-05
(P49143) RecName: Full=Transthyretin; AltName: Full=Prealbumin; ... 50 2e-05
AK014454_1(AK014454|pid:none) Mus musculus 18 days pregnant adul... 50 3e-05
AP008229_4113(AP008229|pid:none) Xanthomonas oryzae pv. oryzae M... 50 3e-05
CP000943_4986(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 50 3e-05
AF047443_1(AF047443|pid:none) Sparus aurata transthyretin precur... 50 3e-05
(P07309) RecName: Full=Transthyretin; AltName: Full=Prealbumin; ... 50 3e-05
K03252_1(K03252|pid:none) Rat prealbumin (transthyretin) mRNA, c... 49 4e-05
(Q8HXW1) RecName: Full=Transthyretin; AltName: Full=Prealbumin; ... 49 7e-05
(Q29616) RecName: Full=Transthyretin; AltName: Full=Prealbumin; ... 48 9e-05
AE013598_4268(AE013598|pid:none) Xanthomonas oryzae pv. oryzae K... 48 9e-05
AP007155_594(AP007155|pid:none) Aspergillus oryzae RIB40 genomic... 48 9e-05
AB083330_1(AB083330|pid:none) Macaca fascicularis ttr mRNA for t... 48 9e-05
BC170444_1(BC170444|pid:none) Xenopus laevis transthyretin, mRNA... 48 9e-05
DQ334337_1(DQ334337|pid:none) Anas platyrhynchos transthyretin p... 48 1e-04
(P49141) RecName: Full=Transthyretin; AltName: Full=Prealbumin; ... 47 2e-04
AB026996_1(AB026996|pid:none) Xenopus laevis mRNA for transthyre... 47 3e-04
EF192019_1(EF192019|pid:none) Taeniopygia guttata clone 0064P001... 47 3e-04
CP001002_74(CP001002|pid:none) Methylobacterium radiotolerans JC... 46 4e-04
BC135936_1(BC135936|pid:none) Xenopus tropicalis hypothetical pr... 45 6e-04
CP000967_411(CP000967|pid:none) Xanthomonas oryzae pv. oryzae PX... 45 6e-04
X87846_1(X87846|pid:none) S.scrofa mRNA for transthyretin. 45 6e-04
AF059193_1(AF059193|pid:none) Sparus aurata transthyretin precur... 45 8e-04
DQ215962_1(DQ215962|pid:none) Taeniopygia guttata clone 0058P000... 45 0.001
DQ215963_1(DQ215963|pid:none) Taeniopygia guttata clone 0058P000... 45 0.001
AM747720_3092(AM747720|pid:none) Burkholderia cenocepacia J2315 ... 44 0.002
CU633750_793(CU633750|pid:none) Cupriavidus taiwanensis str. LMG... 44 0.002
AY665292_1(AY665292|pid:none) Pan troglodytes transthyretin mRNA... 44 0.002
(Q5U7I5) RecName: Full=Transthyretin; AltName: Full=Prealbumin; ... 44 0.002
DQ215976_1(DQ215976|pid:none) Taeniopygia guttata clone 0058P002... 43 0.003
CR456908_1(CR456908|pid:none) Homo sapiens full open reading fra... 43 0.004
NRL(1TLMA) Transthyretin (also called prealbumin) complex with 43 0.004
(P02766) RecName: Full=Transthyretin; AltName: Full=Prealbumin; ... 43 0.004
M11714_1(M11714|pid:none) Human transthyretin mRNA, partial cds. 43 0.004
AY892493_1(AY892493|pid:none) Synthetic construct Homo sapiens c... 43 0.004
NRL(1THCA) Transthyretin (also called prealbumin) complex with 3', 43 0.004
NRL(1ETBA) Transthyretin (prealbumin) mutant with ala 109 replac... 43 0.004
NRL(1THAA) Transthyretin (also called prealbumin) complex with 3... 43 0.004
NRL(1THCB) Transthyretin (also called prealbumin) complex with 3', 43 0.004
CP000975_2330(CP000975|pid:none) Methylacidiphilum infernorum V4... 42 0.007
CP000494_6771(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 42 0.009
D00096_1(D00096|pid:none) Homo sapiens mRNA for prealbumin, comp... 42 0.009
DQ215964_1(DQ215964|pid:none) Taeniopygia guttata clone 0058P006... 42 0.009
BC081488_1(BC081488|pid:none) Danio rerio transthyretin (prealbu... 41 0.011
CP000943_3813(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 40 0.025
CU234118_816(CU234118|pid:none) Bradyrhizobium sp. ORS278,comple... 38 0.096
(O46654) RecName: Full=Transthyretin; AltName: Full=Prealbumin; ... 36 0.36
DQ398024_1(DQ398024|pid:none) Rana pipiens transthyretin mRNA, p... 36 0.48
EU746613_1(EU746613|pid:none) Nasonia vitripennis strain AsymC 1... 35 0.81
EU746617_1(EU746617|pid:none) Nasonia vitripennis strain HiCD12 ... 35 0.81
CU633900_458(CU633900|pid:none) Podospora anserina genomic DNA c... 35 1.1
BA000040_3283(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 34 1.4
EU967456_1(EU967456|pid:none) Zea mays clone 303269 carrier/ ste... 34 1.4
AM114193_1193(AM114193|pid:none) Uncultured methanogenic archaeo... 34 1.4
BA000016_1231(BA000016|pid:none) Clostridium perfringens str. 13... 34 1.4
AY601284_1(AY601284|pid:none) Haemophilus influenzae strain AAr9... 34 1.8
CP000102_486(CP000102|pid:none) Methanosphaera stadtmanae DSM 30... 33 2.4
AC115680_12(AC115680|pid:none) Dictyostelium discoideum chromoso... 33 3.1
CP000312_1216(CP000312|pid:none) Clostridium perfringens SM101, ... 33 4.0
(Q9KUR9) RecName: Full=LPS-assembly protein lptD; AltName: Full=... 33 4.0
CU928179_614(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 33 4.0
CP001322_1862(CP001322|pid:none) Desulfatibacillum alkenivorans ... 33 4.0
CP001233_420(CP001233|pid:none) Vibrio cholerae M66-2 chromosome... 33 4.0
CP000904_137(CP000904|pid:none) Bacillus weihenstephanensis KBAB... 32 5.3
AE008384_83(AE008384|pid:none) Methanosarcina mazei strain Goe1,... 32 6.9
(Q7A780) RecName: Full=Serine-aspartate repeat-containing protei... 32 6.9
AX647707_1(AX647707|pid:none) Sequence 1899 from Patent EP1270724. 32 6.9
AM076203_1(AM076203|pid:none) Staphylococcus aureus partial sdrD... 32 6.9
AM076200_1(AM076200|pid:none) Staphylococcus aureus partial sdrD... 32 6.9
AM076196_1(AM076196|pid:none) Staphylococcus aureus partial sdrD... 32 6.9
AM076227_1(AM076227|pid:none) Staphylococcus aureus partial sdrD... 32 6.9
AM076198_1(AM076198|pid:none) Staphylococcus aureus partial sdrD... 32 6.9
CP000703_575(CP000703|pid:none) Staphylococcus aureus subsp. aur... 32 6.9
(Q8NXX6) RecName: Full=Serine-aspartate repeat-containing protei... 32 6.9
BX293980_286(BX293980|pid:none) Mycoplasma mycoides subsp. mycoi... 32 9.0
(P34853) RecName: Full=NADH-ubiquinone oxidoreductase chain 4; ... 32 9.0
>CP001172_1208(CP001172|pid:none) Acinetobacter baumannii
AB307-0294, complete genome.
&CP001182_2482(CP001182|pid:none)
&CU459141_1261(CU459141|pid:none)
Length = 133
Score = 94.4 bits (233), Expect = 1e-18
Identities = 52/121 (42%), Positives = 78/121 (64%), Gaps = 5/121 (4%)
Frame = +1
Query: 46 SSNLKTHSTISTHVLDTTTGLPAMDMKVIXEKDNGNGQYITIKSVLTNSDGR-SREFPEX 222
S+ + +S HVL+ TGLP+ ++V+ EK N N Q++ + +T+S+GR + +PE
Sbjct: 15 SATFAQTNPLSVHVLNLETGLPSSQVEVVLEK-NTNNQWVKLNQQVTDSNGRITALYPEN 73
Query: 223 ---ENGIYKITFFTEEYFKNQNFSNYFFPKASVDFIIN-QAKHYHVPLLLSPYSFSTYRG 390
E G+YK+TF TEE+FK +N FF + V F ++ HYH+PLLLSPY +STYRG
Sbjct: 74 KKLEQGVYKVTFKTEEWFK-KNKQQTFFSEVPVIFKVDGSVNHYHIPLLLSPYGYSTYRG 132
Query: 391 S 393
+
Sbjct: 133 N 133
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 544,821,750
Number of extensions: 9560859
Number of successful extensions: 28331
Number of sequences better than 10.0: 231
Number of HSP's gapped: 28066
Number of HSP's successfully gapped: 231
Length of query: 144
Length of database: 1,040,966,779
Length adjustment: 107
Effective length of query: 37
Effective length of database: 698,108,284
Effective search space: 25830006508
Effective search space used: 25830006508
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)
|
| PSORT |
|
| VS (DIR, S) |
1 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |