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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U06494-1
Contig ID Contig-U06494-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U06494-1 (Contig-U06494-1Q) /CSM_Contig/Contig-U06494-1Q.Seq.d
TGTTGAATCACACCAAGGAAGAATGCACAGAGGTAGTGGCGAACGTCATC
ATCGTGCTGGTGGAAATCAACAACAACCACAACCACCATCAGAACAACAA
GTAGAAAGTTCATACAATAGTAATGATGATGGTTCATCAAATAGTTGGTG
GTCAGCAACTAGTTGGTATGGAGCAGGCACAACCAGTTGGTATTCAGGAG
GTACAACCAGTAACCCAGTAGGCACAACTACTTGGTATTCAGGAGGCACA
ACCAGTAACCCAGTAGGCACAACTAGTTGGTATTCAGGTGGTTTTGGTAC
GTACGATAGTGATTCATCATCTTTCTCATATGAAAACTCTTCAAATGAAA
CCATCGTAATTTATATCAATCCAGTAACTTTGGTTTTTACATTGGTCTTA
TTACTTACTTTTATCGTTCTCACAATTACCCAATCATTAAGAAAATATTA
AACAAGTAGAAACAAAACAAACCGACCAACCAACAATAACAACAACAACA
AATTTGTATCCATACATAACTTTAATTGTAATATTTAATAAATCATCTGA
TTCACCA
Gap no gap
Contig length 557
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 184201
End point 184758
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 2
Link to clone list U06494
List of clone(s) 

est1=VSC834Z,1,558
est2=VSE710Z,33,556
Translated Amino Acid sequence 
VESHQGRMHRGSGERHHRAGGNQQQPQPPSEQQVESSYNSNDDGSSNSWWSATSWYGAGT
TSWYSGGTTSNPVGTTTWYSGGTTSNPVGTTSWYSGGFGTYDSDSSSFSYENSSNETIVI
YINPVTLVFTLVLLLTFIVLTITQSLRKY*tsrnktnrptnnnnnnkfvsihnfncni**
ii*ft
Translated Amino Acid sequence (All Frames) 
Frame A:
c*itprknaqr*wrtssscwwksttttttirttsrkfiq****wfik*lvvsn*lvwsrh
nqlvfrrynq*psrhnylvfrrhnq*psrhn*lvfrwfwyvr**fiifli*klfk*nhrn
lyqssnfgfyiglityfyrshnypiikkilnk*kqnkptnqq*qqqqiciht*l*l*yli
nhlih


Frame B:
VESHQGRMHRGSGERHHRAGGNQQQPQPPSEQQVESSYNSNDDGSSNSWWSATSWYGAGT
TSWYSGGTTSNPVGTTTWYSGGTTSNPVGTTSWYSGGFGTYDSDSSSFSYENSSNETIVI
YINPVTLVFTLVLLLTFIVLTITQSLRKY*tsrnktnrptnnnnnnkfvsihnfncni**
ii*ft


Frame C:
lnhtkeectevvanviivlveinnnhnhhqnnk*kvhtivmmmvhqivggqqlvgmeqaq
pvgiqevqpvtq*aqllgiqeaqpvtq*aqlvgiqvvlvrtivihhlshmktlqmkps*f
isiq*lwflhwsyylllsfsqlpnh*enikqvetkqtdqptittttnlypyitlivifnk
ssdsp
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06494-1 (Contig-U06494-1Q)
/CSM_Contig/Contig-U06494-1Q.Seq.d
         (557 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06494-1 (Contig-U06494-1Q) /CSM_Contig/Conti...   888  0.0
Contig-U09796-1 (Contig-U09796-1Q) /CSM_Contig/Conti...    48  1e-05
Contig-U01343-1 (Contig-U01343-1Q) /CSM_Contig/Conti...    46  4e-05
Contig-U11515-1 (Contig-U11515-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U13852-1 (Contig-U13852-1Q) /CSM_Contig/Conti...    42  6e-04
Contig-U12830-1 (Contig-U12830-1Q) /CSM_Contig/Conti...    42  6e-04
Contig-U12510-1 (Contig-U12510-1Q) /CSM_Contig/Conti...    42  6e-04
Contig-U12341-1 (Contig-U12341-1Q) /CSM_Contig/Conti...    42  6e-04
Contig-U11673-1 (Contig-U11673-1Q) /CSM_Contig/Conti...    42  6e-04
Contig-U10018-1 (Contig-U10018-1Q) /CSM_Contig/Conti...    42  6e-04

>Contig-U06494-1 (Contig-U06494-1Q) /CSM_Contig/Contig-U06494-1Q.Seq.d
          Length = 557

 Score =  888 bits (448), Expect = 0.0
 Identities = 448/448 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttgaatcacaccaaggaagaatgcacagaggtagtggcgaacgtcatcatcgtgctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tgttgaatcacaccaaggaagaatgcacagaggtagtggcgaacgtcatcatcgtgctgg 60

                                                                       
Query: 61  tggaaatcaacaacaaccacaaccaccatcagaacaacaagtagaaagttcatacaatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tggaaatcaacaacaaccacaaccaccatcagaacaacaagtagaaagttcatacaatag 120

                                                                       
Query: 121 taatgatgatggttcatcaaatagttggtggtcagcaactagttggtatggagcaggcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 taatgatgatggttcatcaaatagttggtggtcagcaactagttggtatggagcaggcac 180

                                                                       
Query: 181 aaccagttggtattcaggaggtacaaccagtaacccagtaggcacaactacttggtattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaccagttggtattcaggaggtacaaccagtaacccagtaggcacaactacttggtattc 240

                                                                       
Query: 241 aggaggcacaaccagtaacccagtaggcacaactagttggtattcaggtggttttggtac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aggaggcacaaccagtaacccagtaggcacaactagttggtattcaggtggttttggtac 300

                                                                       
Query: 301 gtacgatagtgattcatcatctttctcatatgaaaactcttcaaatgaaaccatcgtaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtacgatagtgattcatcatctttctcatatgaaaactcttcaaatgaaaccatcgtaat 360

                                                                       
Query: 361 ttatatcaatccagtaactttggtttttacattggtcttattacttacttttatcgttct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttatatcaatccagtaactttggtttttacattggtcttattacttacttttatcgttct 420

                                       
Query: 421 cacaattacccaatcattaagaaaatat 448
           ||||||||||||||||||||||||||||
Sbjct: 421 cacaattacccaatcattaagaaaatat 448


 Score =  109 bits (55), Expect = 3e-24
 Identities = 55/55 (100%)
 Strand = Plus / Plus

                                                                  
Query: 503 tttgtatccatacataactttaattgtaatatttaataaatcatctgattcacca 557
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tttgtatccatacataactttaattgtaatatttaataaatcatctgattcacca 557


>Contig-U09796-1 (Contig-U09796-1Q) /CSM_Contig/Contig-U09796-1Q.Seq.d
          Length = 670

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 68  caacaacaaccacaaccaccatca 91
           ||||||||||||||||||||||||
Sbjct: 295 caacaacaaccacaaccaccatca 318


 Score = 32.2 bits (16), Expect = 0.61
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 67  tcaacaacaaccacaaccac 86
           ||||| ||||||||||||||
Sbjct: 408 tcaaccacaaccacaaccac 427


 Score = 32.2 bits (16), Expect = 0.61
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                   
Query: 68  caacaacaaccacaaccaccatca 91
           |||| |||||||||||||| ||||
Sbjct: 445 caaccacaaccacaaccacaatca 468


 Score = 30.2 bits (15), Expect = 2.4
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                              
Query: 68  caacaacaaccacaaccac 86
           |||| ||||||||||||||
Sbjct: 415 caaccacaaccacaaccac 433


 Score = 30.2 bits (15), Expect = 2.4
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                              
Query: 68  caacaacaaccacaaccac 86
           |||| ||||||||||||||
Sbjct: 421 caaccacaaccacaaccac 439


 Score = 30.2 bits (15), Expect = 2.4
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                              
Query: 68  caacaacaaccacaaccac 86
           |||| ||||||||||||||
Sbjct: 433 caaccacaaccacaaccac 451


 Score = 30.2 bits (15), Expect = 2.4
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                              
Query: 68  caacaacaaccacaaccac 86
           |||| ||||||||||||||
Sbjct: 439 caaccacaaccacaaccac 457


 Score = 30.2 bits (15), Expect = 2.4
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                              
Query: 68  caacaacaaccacaaccac 86
           |||| ||||||||||||||
Sbjct: 427 caaccacaaccacaaccac 445


>Contig-U01343-1 (Contig-U01343-1Q) /CSM_Contig/Contig-U01343-1Q.Seq.d
          Length = 1141

 Score = 46.1 bits (23), Expect = 4e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 68  caacaacaaccacaaccaccatcagaacaac 98
           |||||||||| ||||||||||||| ||||||
Sbjct: 437 caacaacaacaacaaccaccatcacaacaac 467


 Score = 38.2 bits (19), Expect = 0.010
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 68  caacaacaaccacaaccac 86
           |||||||||||||||||||
Sbjct: 329 caacaacaaccacaaccac 347


 Score = 34.2 bits (17), Expect = 0.15
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 80  caaccaccatcagaacaacaa 100
           |||||||||||| ||||||||
Sbjct: 422 caaccaccatcacaacaacaa 442


 Score = 30.2 bits (15), Expect = 2.4
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                              
Query: 68  caacaacaaccacaaccac 86
           |||| ||||||||||||||
Sbjct: 335 caaccacaaccacaaccac 353


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6990
Number of Sequences: 6905
Number of extensions: 6990
Number of successful extensions: 1400
Number of sequences better than 10.0: 489
length of query: 557
length of database: 5,674,871
effective HSP length: 16
effective length of query: 541
effective length of database: 5,564,391
effective search space: 3010335531
effective search space used: 3010335531
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11. 8
Homology vs DNA 
Query= Contig-U06494-1 (Contig-U06494-1Q) /CSM_Contig/Contig-U06494-1Q.Seq.d
         (557 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU262824) Dictyostelium discoideum vegetative cDNA clone:VS...   890   0.0    2
(AU263312) Dictyostelium discoideum vegetative cDNA clone:VS...   819   0.0    2
(EH783629) CNSS22861.b1_I04.ab1 CNS(LMS) yellow starthistle ...    52   0.022  1
(AB231875) Octopus ocellatus mRNA for zinc finger protein Oo...    50   0.085  1
(AC132694) Rattus norvegicus clone CH230-490C22, WORKING DRA...    50   0.085  1
(AC130126) Rattus norvegicus clone CH230-139L11, *** SEQUENC...    50   0.085  1
(AC128004) Rattus norvegicus clone CH230-262L8, *** SEQUENCI...    50   0.085  1
(AU061940) Dictyostelium discoideum slug cDNA, clone SLG706.       46   0.12   2
(AC161884) Mus musculus BAC clone RP23-77K23 from chromosome...    48   0.34   1
(CQ574818) Sequence 2576 from Patent WO0171042.                    48   0.34   1
(CQ574817) Sequence 2575 from Patent WO0171042.                    48   0.34   1
(AE014298) Drosophila melanogaster chromosome X, complete se...    48   0.34   1
(AC116551) Dictyostelium discoideum chromosome 2 map complem...    48   0.34   1
(AC023732) Drosophila melanogaster X BAC RP98-42M11 (Roswell...    48   0.34   1
(AC023705) Drosophila melanogaster X BAC RP98-7L6 (Roswell P...    48   0.34   1
(AC152561) Mus musculus chromosome 14 clone RP23-223N10, ***...    48   0.34   1
(AC121509) Mus musculus clone RP24-365J5, WORKING DRAFT SEQU...    48   0.34   1
(AC163340) Mus musculus chromosome 14 clone RP24-357F12, WOR...    48   0.34   1
(AC014065) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    48   0.34   1
(AU265802) Dictyostelium discoideum vegetative cDNA clone:VS...    48   0.34   1
(CV527620) CS_GIL_06A05_SP6 Blue crab gill, normalized Calli...    48   0.34   1
(CV527141) CS_GIL_10F08_SP6 Blue crab gill, normalized Calli...    48   0.34   1
(CV479322) CS_hyp_43e08_M13Reverse Blue crab hypodermis, nor...    48   0.34   1
(CV303516) CS_hyp_32b06_M13Reverse Blue crab hypodermis, nor...    48   0.34   1
(CV303352) CS_hyp_32e11_M13Reverse Blue crab hypodermis, nor...    48   0.34   1
(CV161987) CS_gil_49D09_M13Reverse Blue crab gill, normalize...    48   0.34   1
(CV161943) CS_gil_49C11_M13Reverse Blue crab gill, normalize...    48   0.34   1
(CK132006) LP13161.5prime LP Drosophila melanogaster larval-...    48   0.34   1
(CK131866) LP12901.5prime LP Drosophila melanogaster larval-...    48   0.34   1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    40   0.98   7
(AC134845) Mus musculus BAC clone RP24-424K5 from chromosome...    46   1.3    1
(AC133102) Mus musculus BAC clone RP23-173H19 from 1, comple...    46   1.3    1
(AC128270) Rattus norvegicus 12 BAC CH230-48A22 (Children's ...    46   1.3    1
(CT476835) Human DNA sequence from clone CH507-286C5 on chro...    46   1.3    1
(AC097520) Homo sapiens BAC clone RP11-562F9 from 4, complet...    46   1.3    1
(AC125574) Rattus norvegicus clone CH230-9J9, *** SEQUENCING...    46   1.3    1
(AC124889) Rattus norvegicus clone CH230-1C21, *** SEQUENCIN...    46   1.3    1
(AC091342) Rattus norvegicus clone CH230-1C20, WORKING DRAFT...    46   1.3    1
(DH471558) Monosiga ovata DNA, fosmid clone: MOF-017L08, gen...    46   1.3    1
(ES930647) 36RDBRG_UP_094_D12_20JAN2006_090 Brassica rapa 36...    46   1.3    1
(EG761911) EST_ssal_sjb_41 ssalsjb mixed_tissue Salmo salar ...    46   1.3    1
(DW154603) CLVX6680.b1_P13.ab1 CLV(XYZ) lettuce virosa Lactu...    46   1.3    1
(BQ859664) QGC13K14.yg.ab1 QG_ABCDI lettuce salinas Lactuca ...    46   1.3    1
(FD989202) RR4GW62TF RR4(PB) Raphanus raphanistrum subsp. la...    46   1.3    1
(FD985017) RR4GW62JQ RR4(PB) Raphanus raphanistrum subsp. la...    46   1.3    1
(EY918817) RR4DL34JQ RR4(PB) Raphanus raphanistrum subsp. la...    46   1.3    1
(EX775384) RR4C182JQ RR4(PB) Raphanus raphanistrum subsp. la...    46   1.3    1
(EX771324) RR4C182TF RR4(PB) Raphanus raphanistrum subsp. la...    46   1.3    1
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    44   1.5    4
(BX510911) Zebrafish DNA sequence from clone CH211-150K17 in...    38   2.5    4
(AC181245) Strongylocentrotus purpuratus clone R3-115L13, WO...    36   2.7    4
(CB282278) BT0249 Blomia tropicalis cDNA library Blomia trop...    42   2.8    2
(CQ589844) Sequence 17602 from Patent WO0171042.                   34   3.0    3
(AR552243) Sequence 7374 from patent US 6747137.                   34   3.4    2
(DR935366) EST1126905 Aquilegia cDNA library Aquilegia formo...    34   3.5    2
(DT738129) EST1171978 Aquilegia cDNA library Aquilegia formo...    34   3.5    2
(DR950816) EST1142355 Aquilegia cDNA library Aquilegia formo...    34   3.5    2
(DT750572) EST1184421 Aquilegia cDNA library Aquilegia formo...    34   3.5    2
(DT767496) EST1201345 Aquilegia cDNA library Aquilegia formo...    34   3.5    2
(DR366348) 11068150 CERES-AN65 Arabidopsis thaliana cDNA clo...    38   4.0    2
(DR366345) 6635952 CERES-AL46 Arabidopsis thaliana cDNA clon...    38   5.0    2
(AC149590) Mus musculus BAC clone RP23-348L9 from chromosome...    44   5.3    1
(AC122466) Mus musculus BAC clone RP24-304N8 from chromosome...    44   5.3    1
(AC120004) Mus musculus chromosome 5, clone RP24-150N15, com...    44   5.3    1
(AP007157) Aspergillus oryzae RIB40 genomic DNA, SC023.            44   5.3    1
(AK252001) Hordeum vulgare subsp. vulgare cDNA clone: FLbaf1...    44   5.3    1
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    44   5.3    1
(AC117080) Dictyostelium discoideum chromosome 2 map complem...    44   5.3    1
(AL137139) Human DNA sequence from clone RP11-134O15 on chro...    44   5.3    1
(AC004803) Homo sapiens 12 BAC RP11-359B12 (Roswell Park Can...    44   5.3    1
(AC131440) Rattus norvegicus clone CH230-5I1, WORKING DRAFT ...    44   5.3    1
(AC128184) Rattus norvegicus clone CH230-378D10, WORKING DRA...    44   5.3    1
(AC095963) Rattus norvegicus clone CH230-10I14, *** SEQUENCI...    44   5.3    1
(AC221434) Bos taurus clone CH240-407D14, WORKING DRAFT SEQU...    44   5.3    1
(AC219824) Bos taurus clone CH240-320O23, WORKING DRAFT SEQU...    44   5.3    1
(FM204352) Triticum aestivum GSS, clone 46-M13-1.                  44   5.3    1
(BZ246926) CH230-273A8.TV CHORI-230 Segment 2 Rattus norvegi...    44   5.3    1
(DV550415) 1000063-B07.GAD10-F UGI-Reseq Zea mays cDNA, mRNA...    44   5.3    1
(DR921567) EST1113106 Aquilegia cDNA library Aquilegia formo...    44   5.3    1
(CO897338) CS_gil_02D04_M13Reverse Blue crab gill, normalize...    44   5.3    1
(CK125306) BES1824107k09 BES1824 Hordeum vulgare subsp. vulg...    44   5.3    1
(BQ470796) HX04A22r HX Hordeum vulgare subsp. vulgare cDNA c...    44   5.3    1
(BJ404476) Dictyostelium discoideum cDNA clone:dds28l13, 3' ...    44   5.3    1
(BJ397743) Dictyostelium discoideum cDNA clone:dds47m08, 5' ...    44   5.3    1
(BJ391835) Dictyostelium discoideum cDNA clone:dds25k07, 5' ...    44   5.3    1
(BJ391562) Dictyostelium discoideum cDNA clone:dds24k07, 5' ...    44   5.3    1
(BJ344616) Dictyostelium discoideum cDNA clone:dda19m24, 3' ...    44   5.3    1
(BF728491) 1000063B07.x1 1000 - Unigene I from Maize Genome ...    44   5.3    1
(FE770000) CCAG535.g6 CCAG Petrolisthes cinctipes heart, gil...    44   5.3    1
(FE767379) CCAG3777.g1 CCAG Petrolisthes cinctipes heart, gi...    44   5.3    1
(AW400071) 707061E07.x1 707 - Mixed adult tissues from Walbo...    44   5.3    1
(EY425372) ZY088161 Aspergillus oryzae EST Library Aspergill...    44   5.3    1
(DR366347) 5790531 CERES-AL45 Arabidopsis thaliana cDNA clon...    38   5.3    2
(DR366346) 12825518 CERES-AN65 Arabidopsis thaliana cDNA clo...    38   6.8    2
(FG089070) CMRC-FF-IH0-acm-p-01-0-CMRC.r1 Ceratitis capitata...    36   8.5    2
(EK200649) 1095460055569 Global-Ocean-Sampling_GS-31-01-01-1...    38   9.5    2

>(AU262824) Dictyostelium discoideum vegetative cDNA clone:VSC834,
           3' end single read.
          Length = 558

 Score =  890 bits (449), Expect(2) = 0.0
 Identities = 449/449 (100%)
 Strand = Plus / Plus


Query: 1   tgttgaatcacaccaaggaagaatgcacagaggtagtggcgaacgtcatcatcgtgctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tgttgaatcacaccaaggaagaatgcacagaggtagtggcgaacgtcatcatcgtgctgg 60


Query: 61  tggaaatcaacaacaaccacaaccaccatcagaacaacaagtagaaagttcatacaatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tggaaatcaacaacaaccacaaccaccatcagaacaacaagtagaaagttcatacaatag 120


Query: 121 taatgatgatggttcatcaaatagttggtggtcagcaactagttggtatggagcaggcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 taatgatgatggttcatcaaatagttggtggtcagcaactagttggtatggagcaggcac 180


Query: 181 aaccagttggtattcaggaggtacaaccagtaacccagtaggcacaactacttggtattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaccagttggtattcaggaggtacaaccagtaacccagtaggcacaactacttggtattc 240


Query: 241 aggaggcacaaccagtaacccagtaggcacaactagttggtattcaggtggttttggtac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aggaggcacaaccagtaacccagtaggcacaactagttggtattcaggtggttttggtac 300


Query: 301 gtacgatagtgattcatcatctttctcatatgaaaactcttcaaatgaaaccatcgtaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtacgatagtgattcatcatctttctcatatgaaaactcttcaaatgaaaccatcgtaat 360


Query: 361 ttatatcaatccagtaactttggtttttacattggtcttattacttacttttatcgttct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttatatcaatccagtaactttggtttttacattggtcttattacttacttttatcgttct 420


Query: 421 cacaattacccaatcattaagaaaatatt 449
           |||||||||||||||||||||||||||||
Sbjct: 421 cacaattacccaatcattaagaaaatatt 449

 Score =  109 bits (55), Expect(2) = 0.0
 Identities = 55/55 (100%)
 Strand = Plus / Plus


Query: 503 tttgtatccatacataactttaattgtaatatttaataaatcatctgattcacca 557
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tttgtatccatacataactttaattgtaatatttaataaatcatctgattcacca 557

 Score =  105 bits (53), Expect = 2e-18
 Identities = 65/69 (94%)
 Strand = Plus / Plus


Query: 220 aggcacaactacttggtattcaggaggcacaaccagtaacccagtaggcacaactagttg 279
           ||||||||| | ||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 175 aggcacaaccagttggtattcaggaggtacaaccagtaacccagtaggcacaactacttg 234


Query: 280 gtattcagg 288
           |||||||||
Sbjct: 235 gtattcagg 243

 Score =  105 bits (53), Expect = 2e-18
 Identities = 65/69 (94%)
 Strand = Plus / Plus


Query: 175 aggcacaaccagttggtattcaggaggtacaaccagtaacccagtaggcacaactacttg 234
           ||||||||| | ||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 220 aggcacaactacttggtattcaggaggcacaaccagtaacccagtaggcacaactagttg 279


Query: 235 gtattcagg 243
           |||||||||
Sbjct: 280 gtattcagg 288

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 525,651,300
Number of extensions: 30173507
Number of successful extensions: 2409796
Number of sequences better than 10.0: 97
Length of query: 557
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 534
Effective length of database: 93,106,754,628
Effective search space: 49719006971352
Effective search space used: 49719006971352
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.22
Homology vs Protein 
Query= Contig-U06494-1 (Contig-U06494-1Q) /CSM_Contig/Contig-U06494-1Q.Seq.d
         (557 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY878349_1(AY878349|pid:none) Danio rerio ribeye a protein mRNA,...    34   2.2
FB824391_1(FB824391|pid:none) Sequence 43664 from Patent WO20080...    33   5.0
FJ006641_1(FJ006641|pid:none) Aegilops longissima gamma-gliadin ...    33   5.0
FJ006711_1(FJ006711|pid:none) Aegilops bicornis gamma-gliadin (t...    33   5.0
FJ006643_1(FJ006643|pid:none) Aegilops longissima gamma-gliadin ...    33   5.0
FJ006704_1(FJ006704|pid:none) Aegilops bicornis gamma-gliadin (t...    33   5.0
FJ006712_1(FJ006712|pid:none) Aegilops bicornis gamma-gliadin (t...    33   5.0

>AY878349_1(AY878349|pid:none) Danio rerio ribeye a protein mRNA,
           complete cds.
          Length = 1147

 Score = 34.3 bits (77), Expect = 2.2
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = +3

Query: 132 VHQIVGGQQLVGMEQAQPVG-IQEVQPVTQ*AQLLGIQEAQPVTQ*AQLVGIQVV 293
           V Q+   Q +  M+QAQPV  +Q+ QPV Q   +  +Q+ QPV Q  Q+  +Q V
Sbjct: 326 VQQMQQVQPVQQMQQAQPVQQMQQAQPVQQMQPVQPVQQMQPVQQVQQVPQVQPV 380

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 688,769,166
Number of extensions: 10966878
Number of successful extensions: 21173
Number of sequences better than 10.0: 7
Number of HSP's gapped: 21073
Number of HSP's successfully gapped: 7
Length of query: 185
Length of database: 1,040,966,779
Length adjustment: 121
Effective length of query: 64
Effective length of database: 653,248,294
Effective search space: 41807890816
Effective search space used: 41807890816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.38  gvh: 0.44  alm: 0.17  top: 0.93  tms: 0.07  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 16.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for Contig-U06494-1 is cyt
VS (DIR, S) 2
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0