NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01321-1
Contig ID Contig-U01321-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U01321-1 (Contig-U01321-1Q) /CSM_Contig/Contig-U01321-1Q.Seq.d
CACCATCAACATCACCATCAACAACTTCAGTTGCACCAAATAAACAACCA
TTAGAAATTTCATCTTCAAATATAAAACAACCATTATCATCATCATTACC
AGCTGCATCGCCAACCACAACATCAACACCTTCCTCTGTAGTAAATAAAA
AACCAAATAATATTATAAATTCTCCATCCACCTCAACTGAAAGTTTAATT
TCATCACCACTTTCAAAATTCACAACTCCATTGGGTTCAATTAGTGGTCC
AAATAACATTAATAATAATAGTAATAATAATAATAATAATAAT-------
---ATGGTGGTAGTATTGGTAGAGAGAGTGGTAATAATTTTTTAAATTTT
TCAAATAGTAGTAATTTTGTAACATTATCATCATCACCATCTTCATCAAA
TTCAATTGGATCACCAAATAAATTCAGTTTAACATCATCACCATTCCTTT
CACAATCACCATCTTCATCTTCATCACCATCTTCATCAAATTCAATTTTA
CATTCTTCAAATTCAAATTCATCACTAAGTACAATCACAAGTAATCATCA
TAAATCTTATCCAAGATATTTATGTCAATCTTGTTTCGATGAATGTTCAA
ATATTTGTCCGCGTTGTAATAATGTTGTTCAATATAGATGTAAAAATCAT
TTAGGTAAAAAATGGCATCCAGATTGTTTATCATTATATGAATCTGATAA
TATTGCTAATAATAATATTAATAATAATACCAATAATACTTCTTTTGAAA
TAGCTTTCTAGTTGGGTGTAAAATAAAATAGAATAAATAAATAAAAAT
Gap gap included
Contig length 788
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 607969
End point 607180
Strand (PLUS/MINUS) MINUS
Number of clones 3
Number of EST 4
Link to clone list U01321
List of clone(s) 

est1=SLF841F,1,231
est2=SLH245F,1,294
est3=SSE814F,295,772
est4=SLF841Z,591,790
Translated Amino Acid sequence 
PSTSPSTTSVAPNKQPLEISSSNIKQPLSSSLPAASPTTTSTPSSVVNKKPNNIINSPST
STESLISSPLSKFTTPLGSISGPNNINNNSNNNNNNN---

---GGSIGRESGNNFLNFSNSSNFVTLSSSPSSSNSIGSPNKFSLTSSPFLSQSPSSSSS
PSSSNSILHSSNSNSSLSTITSNHHKSYPRYLCQSCFDECSNICPRCNNVVQYRCKNHLG
KKWHPDCLSLYESDNIANNNINNNTNNTSFEIAF*lgvk*nrink*k
Translated Amino Acid sequence (All Frames) 
Frame A:
hhqhhhqqlqlhqinnh*kfhlqi*nnhyhhhyqlhrqpqhqhlpl**iknqiil*ilhp
pqlkv*fhhhfqnsqlhwvqlvvqitliiiviiiiii---

---mvvvlvervviif*ifqivvil*hyhhhhlhqiqldhqinsv*hhhhsfhnhhlhlh
hhlhqiqfyilqiqihh*vqsqviiinliqdiyvnlvsmnvqifvrvvimlfnidvkii*
vkngiqivyhymnliilliiiliiipiilllk*lsswv*nkie*inkn

Frame B:
tinitinnfsctk*ttirnfifkykttiiiiitscianhnintflcsk*ktk*yykfsih
ln*kfnfittfkihnsigfn*wsk*h***********---

---ww*yw*rew**ffkffk***fcniiiitifikfnwitk*iqfniitipftitififi
tifikfnftffkfkfitkynhk*ss*ilskifmsilfr*mfkylsal**ccsi*m*ksfr
*kmasrlfiii*i**yc***y***yq*yff*nsflvgckik*nk*ik

Frame C:
PSTSPSTTSVAPNKQPLEISSSNIKQPLSSSLPAASPTTTSTPSSVVNKKPNNIINSPST
STESLISSPLSKFTTPLGSISGPNNINNNSNNNNNNN---

---GGSIGRESGNNFLNFSNSSNFVTLSSSPSSSNSIGSPNKFSLTSSPFLSQSPSSSSS
PSSSNSILHSSNSNSSLSTITSNHHKSYPRYLCQSCFDECSNICPRCNNVVQYRCKNHLG
KKWHPDCLSLYESDNIANNNINNNTNNTSFEIAF*lgvk*nrink*k
own update 2004. 6. 7
Homology vs CSM-cDNA 
Query= Contig-U01321-1 (Contig-U01321-1Q)
/CSM_Contig/Contig-U01321-1Q.Seq.d
         (798 letters)

Database: CSM
           8361 sequences; 7,895,291 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01321-1 (Contig-U01321-1Q) /CSM_Contig/Conti...   779  0.0
Contig-U00405-1 (Contig-U00405-1Q) /CSM_Contig/Conti...    48  2e-05
Contig-U14111-1 (Contig-U14111-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U13362-1 (Contig-U13362-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U12446-1 (Contig-U12446-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U12382-1 (Contig-U12382-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U07288-1 (Contig-U07288-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U13845-1 (Contig-U13845-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U13211-1 (Contig-U13211-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U12222-1 (Contig-U12222-1Q) /CSM_Contig/Conti...    42  0.001

>Contig-U01321-1 (Contig-U01321-1Q) /CSM_Contig/Contig-U01321-1Q.Seq.d
          Length = 798

 Score =  779 bits (393), Expect = 0.0
 Identities = 393/393 (100%)
 Strand = Plus / Plus

                                                                       
Query: 304 atggtggtagtattggtagagagagtggtaataattttttaaatttttcaaatagtagta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 atggtggtagtattggtagagagagtggtaataattttttaaatttttcaaatagtagta 363

                                                                       
Query: 364 attttgtaacattatcatcatcaccatcttcatcaaattcaattggatcaccaaataaat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 attttgtaacattatcatcatcaccatcttcatcaaattcaattggatcaccaaataaat 423

                                                                       
Query: 424 tcagtttaacatcatcaccattcctttcacaatcaccatcttcatcttcatcaccatctt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tcagtttaacatcatcaccattcctttcacaatcaccatcttcatcttcatcaccatctt 483

                                                                       
Query: 484 catcaaattcaattttacattcttcaaattcaaattcatcactaagtacaatcacaagta 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 catcaaattcaattttacattcttcaaattcaaattcatcactaagtacaatcacaagta 543

                                                                       
Query: 544 atcatcataaatcttatccaagatatttatgtcaatcttgtttcgatgaatgttcaaata 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 atcatcataaatcttatccaagatatttatgtcaatcttgtttcgatgaatgttcaaata 603

                                                                       
Query: 604 tttgtccgcgttgtaataatgttgttcaatatagatgtaaaaatcatttaggtaaaaaat 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tttgtccgcgttgtaataatgttgttcaatatagatgtaaaaatcatttaggtaaaaaat 663

                                            
Query: 664 ggcatccagattgtttatcattatatgaatctg 696
           |||||||||||||||||||||||||||||||||
Sbjct: 664 ggcatccagattgtttatcattatatgaatctg 696


 Score =  513 bits (259), Expect = e-145
 Identities = 259/259 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caccatcaacatcaccatcaacaacttcagttgcaccaaataaacaaccattagaaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   caccatcaacatcaccatcaacaacttcagttgcaccaaataaacaaccattagaaattt 60

                                                                       
Query: 61  catcttcaaatataaaacaaccattatcatcatcattaccagctgcatcgccaaccacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  catcttcaaatataaaacaaccattatcatcatcattaccagctgcatcgccaaccacaa 120

                                                                       
Query: 121 catcaacaccttcctctgtagtaaataaaaaaccaaataatattataaattctccatcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 catcaacaccttcctctgtagtaaataaaaaaccaaataatattataaattctccatcca 180

                                                                       
Query: 181 cctcaactgaaagtttaatttcatcaccactttcaaaattcacaactccattgggttcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cctcaactgaaagtttaatttcatcaccactttcaaaattcacaactccattgggttcaa 240

                              
Query: 241 ttagtggtccaaataacat 259
           |||||||||||||||||||
Sbjct: 241 ttagtggtccaaataacat 259


 Score = 60.0 bits (30), Expect = 5e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 739 cttcttttgaaatagctttctagttgggtg 768
           ||||||||||||||||||||||||||||||
Sbjct: 739 cttcttttgaaatagctttctagttgggtg 768


>Contig-U00405-1 (Contig-U00405-1Q) /CSM_Contig/Contig-U00405-1Q.Seq.d
          Length = 1586

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 461 atcttcatcttcatcaccatcttcatca 488
           |||||||||||||||| |||||||||||
Sbjct: 599 atcttcatcttcatcatcatcttcatca 626


>Contig-U14111-1 (Contig-U14111-1Q) /CSM_Contig/Contig-U14111-1Q.Seq.d
          Length = 1239

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 460 catcttcatcttcatcaccatcttcatcaaattc 493
           |||||||||| |||||| |||| |||||||||||
Sbjct: 567 catcttcatcatcatcatcatcatcatcaaattc 600


 Score = 40.1 bits (20), Expect = 0.005
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 461 atcttcatcttcatcaccatcttcatca 488
           |||||||||||||||| |||| ||||||
Sbjct: 562 atcttcatcttcatcatcatcatcatca 589


 Score = 38.2 bits (19), Expect = 0.020
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 377 atcatcatcaccatcttcatcaaattc 403
           |||||||||| |||| |||||||||||
Sbjct: 574 atcatcatcatcatcatcatcaaattc 600


  Database: CSM
    Posted date:  Jun 7, 2004  8:33 AM
  Number of letters in database: 7,895,291
  Number of sequences in database:  8361
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 29,927
Number of Sequences: 8361
Number of extensions: 29927
Number of successful extensions: 5339
Number of sequences better than 10.0: 784
length of query: 798
length of database: 7,895,291
effective HSP length: 16
effective length of query: 782
effective length of database: 7,761,515
effective search space: 6069504730
effective search space used: 6069504730
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 4.26
Homology vs DNA 
Query= Contig-U01321-1 (Contig-U01321-1Q) /CSM_Contig/Contig-U01321-1Q.Seq.d
         (798 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU062024) Dictyostelium discoideum slug cDNA, clone SLH245.      513   e-141  1
(AU061776) Dictyostelium discoideum slug cDNA, clone SLF841.      458   e-124  1
(AU072534) Dictyostelium discoideum slug cDNA, clone SSE814.      256   1e-67  2
(AU053158) Dictyostelium discoideum slug cDNA, clone SLF841.      186   2e-53  2
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135...    38   1e-05  9
(CQ346213) Sequence 20307 from Patent WO0157275.                   38   7e-05  3
(CQ309605) Sequence 20710 from Patent WO0186003.                   38   7e-05  3
(CQ271971) Sequence 20232 from Patent WO0157277.                   38   7e-05  3
(CQ234274) Sequence 21113 from Patent WO0157273.                   38   7e-05  3
(CQ185016) Sequence 16412 from Patent WO0157274.                   38   7e-05  3
(CQ150932) Sequence 20954 from Patent WO0157276.                   38   7e-05  3
(CQ112113) Sequence 20972 from Patent WO0157272.                   38   7e-05  3
(CQ079774) Sequence 15574 from Patent WO0157278.                   38   7e-05  3
(CQ333548) Sequence 7642 from Patent WO0157275.                    38   8e-05  3
(CQ297189) Sequence 8294 from Patent WO0186003.                    38   8e-05  3
(CQ259463) Sequence 7724 from Patent WO0157277.                    38   8e-05  3
(CQ221368) Sequence 8207 from Patent WO0157273.                    38   8e-05  3
(CQ175158) Sequence 6554 from Patent WO0157274.                    38   8e-05  3
(CQ137994) Sequence 8016 from Patent WO0157276.                    38   8e-05  3
(CQ099062) Sequence 7921 from Patent WO0157272.                    38   8e-05  3
(CQ070594) Sequence 6394 from Patent WO0157278.                    38   8e-05  3
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    36   8e-05  10
(L30166) Human STS UT7983, sequence tagged site.                   38   1e-04  3
(FC265030) CAGN15693.rev CAGN Nematostella vectensis Nemve m...    34   2e-04  4
(FC219673) CAGF5517.fwd CAGF Nematostella vectensis Nemve Ea...    34   2e-04  4
(AC146985) Strongylocentrotus purpuratus clone R3-55A17, WOR...    52   2e-04  7
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    38   3e-04  11
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    44   3e-04  10
(AC117082) Dictyostelium discoideum chromosome 2 map complem...    42   4e-04  5
(AE014846) Plasmodium falciparum 3D7 chromosome 12, section ...    36   7e-04  11
(AC131484) Lytechinus variegatus clone Lv177F13, *** SEQUENC...    52   7e-04  3
(BZ164233) CH230-246O13.TJB CHORI-230 Segment 2 Rattus norve...    38   0.001  3
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098...    40   0.001  7
(AM181592) Dictyostelium discoideum AX2 mRNA for Trix, Rac g...    38   0.002  2
(DN030272) JGI_CAAR7807.fwd NIH_XGC_tropLiv1 Xenopus (Silura...    42   0.002  2
(EF608043) Schistosoma haematobium microsatellite B4 sequence.     38   0.002  3
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    38   0.002  9
(GM197642) Sequence 148320 from Patent WO2005116250.               32   0.003  3
(GM197641) Sequence 148319 from Patent WO2005116250.               32   0.003  3
(DH775032) Rattus norvegicus DNA, BAC clone: RNB1-361E21, 3'...    38   0.003  3
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595...    40   0.003  8
(AZ192988) SP_1022_B1_E03_T7A Strongylocentrotus purpuratus,...    44   0.003  3
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    36   0.003  13
(CC586704) CH240_384I7.T7 CHORI-240 Bos taurus genomic clone...    36   0.004  3
(DJ471693) Method for analysing genome using microsatellite ...    38   0.004  3
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    40   0.005  10
(GE049137) 454GmaGlobSeed791785 Soybean Seeds Containing Glo...    46   0.005  2
(AC176902) Strongylocentrotus purpuratus clone R3-31O1, WORK...    44   0.005  3
(AZ188316) SP_1011_B2_C11_SP6E Strongylocentrotus purpuratus...    36   0.006  3
(AM190356) Paracentrotus lividus EST, clone MPMGp1172M0124Q,...    40   0.008  3
(AC005552) Homo sapiens chromosome 17, clone RP11-212E8, com...    38   0.008  6
(GD681757) 454GmaGlobSeed424406 Soybean Seeds Containing Glo...    46   0.008  2
(AM491202) Ensis arcuatus microsatellite DNA, locus P04D01, ...    36   0.009  3
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    36   0.009  8
(EY373880) CAXA14789.rev CAXA Helobdella robusta Subtracted ...    40   0.009  3
(AJ496547) Takifugu rubripes slc11 alpha gene for solute car...    40   0.011  3
(BV677730) SOX11_863.2 Rhesus macaque genomic DNA Macaca mul...    36   0.012  3
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975...    44   0.012  7
(BJ340664) Dictyostelium discoideum cDNA clone:dda3a10, 3' e...    36   0.013  3
(FM172656) Oryzias latipes EST, clone M074--C11_091.               36   0.013  3
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    36   0.014  10
(CQ326669) Sequence 763 from Patent WO0157275.                     44   0.015  3
(CQ289698) Sequence 803 from Patent WO0186003.                     44   0.015  3
(CQ252552) Sequence 813 from Patent WO0157277.                     44   0.015  3
(CQ213968) Sequence 807 from Patent WO0157273.                     44   0.015  3
(CQ198504) Sequence 781 from Patent WO0157271.                     44   0.015  3
(CQ169368) Sequence 764 from Patent WO0157274.                     44   0.015  3
(CQ130759) Sequence 781 from Patent WO0157276.                     44   0.015  3
(CQ091943) Sequence 802 from Patent WO0157272.                     44   0.015  3
(CQ064990) Sequence 790 from Patent WO0157278.                     44   0.015  3
(CQ049952) Sequence 772 from Patent WO0157270.                     44   0.015  3
(CN839034) AGENCOURT_25023397 NIH_ZGC_4 Danio rerio cDNA clo...    36   0.017  3
(EK766629) 1093017103857 Global-Ocean-Sampling_GS-33-01-01-1...    36   0.019  3
(AC180791) Strongylocentrotus purpuratus clone R3-3073E14, W...    40   0.019  4
(FM170376) Oryzias latipes EST, clone M066--H8_050.                36   0.020  3
(AY753053) Penaeus monodon clone zt113 microsatellite sequence.    38   0.020  3
(EY358053) CAWZ5582.rev CAWZ Helobdella robusta Primary Late...    44   0.023  2
(EV282457) GLNBG74TF JCVI-SOY3 Glycine max cDNA 5', mRNA seq...    46   0.023  2
(FD857840) CBHA7143.rev CBHA Volvox carteri f. nagariensis i...    40   0.024  2
(FD844573) CBHA12067.rev CBHA Volvox carteri f. nagariensis ...    40   0.024  2
(FD857841) CBHA7143.fwd CBHA Volvox carteri f. nagariensis i...    40   0.024  2
(FD844574) CBHA12067.fwd CBHA Volvox carteri f. nagariensis ...    40   0.024  2
(FD840241) CBGZ8487.fwd CBGZ Volvox carteri f. nagariensis i...    40   0.024  2
(AC091579) Homo sapiens clone RP11-962O23, WORKING DRAFT SEQ...    38   0.024  6
(FD916367) CBOX19213.fwd CBOX Volvox carteri f. nagariensis ...    40   0.025  2
(AC178584) Strongylocentrotus purpuratus clone R3-3023A3, WO...    44   0.025  5
(FD926076) CBOX602.rev CBOX Volvox carteri f. nagariensis in...    40   0.025  2
(FD914187) CBOX18045.fwd CBOX Volvox carteri f. nagariensis ...    40   0.025  2
(FD908265) CBOX14706.fwd CBOX Volvox carteri f. nagariensis ...    40   0.026  2
(FD820799) CBGZ21508.rev CBGZ Volvox carteri f. nagariensis ...    40   0.026  2
(FD916366) CBOX19213.rev CBOX Volvox carteri f. nagariensis ...    40   0.026  2
(FD908264) CBOX14706.rev CBOX Volvox carteri f. nagariensis ...    40   0.026  2
(FD857258) CBHA6834.rev CBHA Volvox carteri f. nagariensis i...    40   0.026  2
(FE841156) HA_MX3_03h03_SP6 Lobster Multiple Tissues, Normal...    36   0.026  3
(FD857259) CBHA6834.fwd CBHA Volvox carteri f. nagariensis i...    40   0.027  2
(AL034560) Plasmodium falciparum MAL3P8.                           44   0.030  5
(AL731814) Mouse DNA sequence from clone RP23-109J20 on chro...    52   0.033  1
(EU416883) Trifolium repens clone CloverSSR-036_F04_011_1 mi...    52   0.033  1
(FK868081) CF_WO1_16F01_SP6 Copepod Whole Organism, Normaliz...    52   0.033  1
(BH327522) CH230-174H21.TV CHORI-230 Segment 1 Rattus norveg...    36   0.035  3
(AZ196050) SP_1031_A2_E05_SP6E Strongylocentrotus purpuratus...    36   0.035  3
(EU327078) Pseudopodoces humilis clone 41 microsatellite PMA...    36   0.036  3
(DH660811) Rattus norvegicus DNA, BAC clone: RNB1-207D07, 3'...    36   0.036  3
(AC115581) Dictyostelium discoideum chromosome 2 map complem...    40   0.038  5
(DX098601) AU_BAC021A1A09_T7 CHORI212 Ictalurus punctatus ge...    34   0.042  3
(AX196297) Sequence 4 from Patent WO0151627.                       38   0.042  7
(AU087119) Plasmodium falciparum 3D7 cDNA clone from Sugano ...    36   0.042  3
(AZ189205) SP_1013_B2_B03_T7A Strongylocentrotus purpuratus,...    36   0.045  3
(AC177720) Strongylocentrotus purpuratus clone R3-1011B13, W...    40   0.045  5
(AM480790) Vitis vinifera contig VV78X216311.8, whole genome...    50   0.050  2
(EG964077) AU_Ich_001A_G11 Whole organism normalized cDNA li...    36   0.052  3
(AC177740) Strongylocentrotus purpuratus clone R3-1008I10, W...    36   0.056  5
(AC176479) Strongylocentrotus purpuratus clone R3-3070L16, W...    44   0.056  2
(AF430396) Penaeus esculentus microsatellite CSGES268 sequence.    36   0.058  3
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    36   0.060  10
(AC168532) Strongylocentrotus purpuratus clone R3-3091N16, W...    44   0.061  4
(AF128626) Dictyostelium discoideum RNA binding protein PufA...    38   0.075  4
(EY934859) RS2DO01JQ RS2(RS) Raphanus sativus cDNA 3', mRNA ...    32   0.077  3
(AC184437) Strongylocentrotus purpuratus clone R3-3016B16, W...    44   0.078  5
(BJ334208) Dictyostelium discoideum cDNA clone:dda45c18, 5' ...    34   0.079  3
(FE150044) LV_LO_RA006J18f Litopenaeus vannamei lymphoid org...    46   0.084  2
(BJ426235) Dictyostelium discoideum cDNA clone:ddv58g09, 5' ...    34   0.086  3
(BJ339183) Dictyostelium discoideum cDNA clone:dda64n10, 5' ...    34   0.087  3
(AC016765) Homo sapiens chromosome 11 clone RP11-555F1, WORK...    44   0.089  3
(EY368497) CAXA11838.rev CAXA Helobdella robusta Subtracted ...    38   0.090  2
(EF715437) Mus musculus C57BL/6N IST10065A4BBR1 gene trap em...    36   0.091  3
(BJ422241) Dictyostelium discoideum cDNA clone:ddv45f10, 5' ...    34   0.092  3
(DH713936) Rattus norvegicus DNA, BAC clone: RNB1-278L18, 5'...    42   0.094  2
(EL428367) CHCM7649.b1_B18.ab1 CHC(LMS) Texas blueweed Helia...    30   0.095  4
(BJ365360) Dictyostelium discoideum cDNA clone:ddc35h03, 5' ...    34   0.099  3
(EY303520) CAWX16757.rev CAWX Helobdella robusta Primary Ear...    36   0.099  3
(BJ333530) Dictyostelium discoideum cDNA clone:dda43g04, 5' ...    34   0.10   3
(DQ471453) Takifugu rubripes immunoglobulin light chain T2a ...    36   0.10   3
(AC177472) Strongylocentrotus purpuratus clone R3-61F12, WOR...    44   0.10   4
(CO113213) GR__Eb013F04.r GR__Eb Gossypium raimondii cDNA cl...    44   0.10   2
(AC108448) Homo sapiens chromosome 11, clone CTD-2544D21, co...    44   0.10   3
(AC179333) Strongylocentrotus purpuratus clone R3-1102K17, W...    44   0.10   5
(EY303521) CAWX16757.fwd CAWX Helobdella robusta Primary Ear...    36   0.11   3
(EJ605447) 1092962003194 Global-Ocean-Sampling_GS-29-01-01-1...    44   0.11   2
(BJ334915) Dictyostelium discoideum cDNA clone:dda48c11, 5' ...    34   0.11   3
(DQ471454) Takifugu rubripes immunoglobulin light chain T2b ...    38   0.11   3
(DW166923) CLVY5374.b1_L24.ab1 CLV(XYZ) lettuce virosa Lactu...    40   0.11   2
(CV409945) RC1-NN0073-090800-017-a07 NN0073 Homo sapiens cDN...    38   0.11   2
(DN785977) 93914588 Sea Urchin primary mesenchyme cell cDNA ...    38   0.11   2
(EY351804) CAWZ18310.rev CAWZ Helobdella robusta Primary Lat...    36   0.11   3
(EY312199) CAWX23885.rev CAWX Helobdella robusta Primary Ear...    34   0.12   3
(FC840397) CBHN10812.rev CBHN Metridium senile tentacle Metr...    36   0.13   3
(EY320652) CAWX7492.rev CAWX Helobdella robusta Primary Earl...    34   0.13   3
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    38   0.13   14
(AC126907) Rattus norvegicus clone CH230-150D22, WORKING DRA...    50   0.13   1
(AC112542) Rattus norvegicus clone CH230-10C21, *** SEQUENCI...    50   0.13   1
(AC095857) Rattus norvegicus clone CH230-10B21, *** SEQUENCI...    50   0.13   1
(AC179739) Strongylocentrotus purpuratus clone R3-1018H15, W...    50   0.13   1
(AC177728) Strongylocentrotus purpuratus clone R3-1008P10, W...    50   0.13   1
(AC176404) Strongylocentrotus purpuratus clone R3-3044J15, W...    50   0.13   1
(AC168615) Strongylocentrotus purpuratus clone R3-3046F6, WO...    50   0.13   1
(AC168580) Strongylocentrotus purpuratus clone R3-3065H7, WO...    50   0.13   1
(AC168527) Strongylocentrotus purpuratus clone R3-3091P24, W...    50   0.13   1
(CT563153) A BAC library has been constructed from cultivar ...    50   0.13   1
(AM513202) Paracentrotus lividus EST, clone MPMGp1171A026Q, ...    44   0.13   3
(BV771206) pRRL2:Newb:20080411:145514 USMARC Pig Breed SNP D...    32   0.13   3
(FC840398) CBHN10812.fwd CBHN Metridium senile tentacle Metr...    36   0.13   3
(EY354227) CAWZ2948.rev CAWZ Helobdella robusta Primary Late...    32   0.13   3
(FC830776) CBHI3636.fwd CBHI Metridium senile tentacle Metri...    40   0.13   3
(FD729794) CAAA9959.fwd CAAA Petromyzon marinus Petromyzon m...    36   0.13   3
(AC171135) Helobdella robusta clone CH306-1A6, complete sequ...    44   0.14   5
(FC851407) CBHN6823.fwd CBHN Metridium senile tentacle Metri...    34   0.14   3
(FC851406) CBHN6823.rev CBHN Metridium senile tentacle Metri...    34   0.14   3
(AC177438) Strongylocentrotus purpuratus clone R3-1030P10, W...    44   0.16   3
(CP001047) Mycoplasma arthritidis 158L3-1, complete genome.        38   0.17   11
(AG988822) Hemicentrotus pulcherrimus BAC clone: BUB1-12F09_...    36   0.17   3
(EY303982) CAWX17396.fwd CAWX Helobdella robusta Primary Ear...    36   0.18   3
(U92974) Lactococcus lactis unknown gene, partial cds, and H...    46   0.18   2
(EF207629) Excirolana hirsuticauda clone Ehir16 microsatelli...    34   0.18   3
(CT164674) Sus scrofa genomic clone CH242-125A23, genomic su...    32   0.18   3
(AC135880) Rattus norvegicus clone CH230-381B23, *** SEQUENC...    42   0.18   2
(DU447065) 1098448099609 CHORI-243 Ovis aries genomic clone ...    44   0.19   2
(EJ484142) 1095403487639 Global-Ocean-Sampling_GS-28-01-01-1...    32   0.20   3
(BH109957) RPCI-24-402C3.TV RPCI-24 Mus musculus genomic clo...    42   0.20   2
(AM413086) Arabidopsis lyrata subsp. petraea microsatellite ...    38   0.21   3
(EA048113) Sequence 4 from patent US 7154021.                      38   0.21   8
(GP062386) Sequence 4 from patent US 7485770.                      38   0.21   8
(CU158994) Equus caballus GSS, BAC clone CH241-289C3, SP6 en...    36   0.22   2
(DE226327) Trifolium pratense DNA, clone:RCG18741.                 36   0.23   3
(DX822315) MUGQ_CH252P073J13T7_CP18_055 CHORI-252 Vervet Mon...    40   0.23   2
(AZ167278) SP_0098_A1_A10_SP6E Strongylocentrotus purpuratus...    36   0.23   3
(EK257036) 1095462015567 Global-Ocean-Sampling_GS-31-01-01-1...    34   0.23   3
(CR382399) Plasmodium falciparum chromosome 6, complete sequ...    32   0.24   8
(EH016819) USDA-FP_189281 Lysiphlebus testaceipes adult whol...    42   0.24   2
(AC179705) Strongylocentrotus purpuratus clone R3-1021I2, WO...    44   0.25   6
(AC176094) Strongylocentrotus purpuratus clone R3-24C2, WORK...    40   0.25   4
(DD231439) UNIVERSAL LIBRARIES FOR IMMUNOGLOBULINS.                34   0.26   2
(AC177777) Strongylocentrotus purpuratus clone R3-1002L11, W...    42   0.26   4
(EY316780) CAWX26815.rev CAWX Helobdella robusta Primary Ear...    40   0.26   2
(AC168616) Strongylocentrotus purpuratus clone R3-3046F7, WO...    44   0.27   6
(CE207310) tigr-gss-dog-17000372667372 Dog Library Canis lup...    36   0.27   3
(AY258721) Xiphophorus maculatus microsatellite Msb077 seque...    36   0.27   2
(AC142437) Rattus norvegicus clone CH230-48H22, WORKING DRAF...    42   0.28   2
(EY319382) CAWX6859.rev CAWX Helobdella robusta Primary Earl...    40   0.29   2
(EY323473) CAWX9018.rev CAWX Helobdella robusta Primary Earl...    40   0.29   2
(FD832556) CBGZ34303.rev CBGZ Volvox carteri f. nagariensis ...    34   0.30   3
(FP101884) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   0.30   6
(M10126) Leishmania tarentolae kinetoplast pre-edited mitoch...    44   0.30   4
(BJ328860) Dictyostelium discoideum cDNA clone:dda29f23, 5' ...    38   0.30   2
(FD154562) CBZC23023.g1 CBZC: Normalized blue catfish cDNA l...    36   0.31   2
(FJ770082) Homo sapiens chromosome 7 PCR sequence PCR_NA1855...    36   0.31   3
(EY301319) CAWX15511.rev CAWX Helobdella robusta Primary Ear...    40   0.32   2
(FC313288) CAIC3830.fwd CAIC Nematostella vectensis Nemve wh...    32   0.32   3
(CU124324) Equus caballus GSS, BAC clone CH241-239B20, SP6 e...    36   0.32   2
(EY353689) CAWZ2248.rev CAWZ Helobdella robusta Primary Late...    40   0.32   2
(EY318093) CAWX6209.rev CAWX Helobdella robusta Primary Earl...    40   0.32   2
(FD084683) CBFH24733.g1 CBFH: Normalized blue catfish cDNA l...    36   0.33   2
(FC161735) 1106908675624 BABEVPN-C-01-1-7KB Papio anubis cDN...    40   0.33   2
(EY361017) CAWZ7490.rev CAWZ Helobdella robusta Primary Late...    40   0.33   2
(EY341113) CAWZ10979.rev CAWZ Helobdella robusta Primary Lat...    40   0.33   2
(EY344092) CAWZ12884.rev CAWZ Helobdella robusta Primary Lat...    40   0.33   2
(AC096931) Rattus norvegicus clone CH230-96E21, WORKING DRAF...    36   0.34   5
(FD165549) CBZC7281.g1 CBZC: Normalized blue catfish cDNA li...    36   0.34   2
(EY347890) CAWZ16200.fwd CAWZ Helobdella robusta Primary Lat...    40   0.35   2
(DV085515) 327-384-16_O17_T7 Nematostella vectensis normaliz...    38   0.35   3
(CD341913) StrPu536.005734 Sea urchin embryo 40hr gastrula s...    42   0.35   2
(EY312665) CAWX24139.rev CAWX Helobdella robusta Primary Ear...    40   0.35   2
(EY379104) CAXA17617.fwd CAXA Helobdella robusta Subtracted ...    38   0.35   2
(CQ343372) Sequence 17466 from Patent WO0157275.                   36   0.36   3
(CQ306244) Sequence 17349 from Patent WO0186003.                   36   0.36   3
(CQ269213) Sequence 17474 from Patent WO0157277.                   36   0.36   3
(CQ231057) Sequence 17896 from Patent WO0157273.                   36   0.36   3
(CQ207588) Sequence 9865 from Patent WO0157271.                    36   0.36   3
(CQ183165) Sequence 14561 from Patent WO0157274.                   36   0.36   3
(CQ147819) Sequence 17841 from Patent WO0157276.                   36   0.36   3
(CQ109177) Sequence 18036 from Patent WO0157272.                   36   0.36   3
(CQ078184) Sequence 13984 from Patent WO0157278.                   36   0.36   3
(CQ058805) Sequence 9625 from Patent WO0157270.                    36   0.36   3
(EY390576) CAXA8806.fwd CAXA Helobdella robusta Subtracted L...    38   0.36   2
(EY388452) CAXA7312.rev CAXA Helobdella robusta Subtracted L...    34   0.36   3
(EY301320) CAWX15511.fwd CAWX Helobdella robusta Primary Ear...    40   0.37   2
(BH356455) CH230-163J19.TV CHORI-230 Segment 1 Rattus norveg...    38   0.38   2
(DY891711) CeleSEQ8357 Cunninghamella elegans pBluescript (E...    36   0.39   2
(CU023412) Equus caballus GSS, BAC clone CH241-93P2, T7 end ...    40   0.39   3
(BJ340307) Dictyostelium discoideum cDNA clone:dda12d18, 3' ...    32   0.40   3
(AX647377) Sequence 1569 from Patent EP1270724.                    38   0.41   4
(AC181526) Strongylocentrotus purpuratus clone R3-1110B11, W...    38   0.41   4
(AC117267) Dictyostelium discoideum chromosome 2 map 5836255...    32   0.42   6
(FD922549) CBOX4060.rev CBOX Volvox carteri f. nagariensis i...    34   0.43   3
(DH738056) Rattus norvegicus DNA, BAC clone: RNB1-311F04, 5'...    32   0.43   3
(AU072466) Dictyostelium discoideum slug cDNA, clone SSE623.       40   0.43   2
(EY303111) CAWX16534.rev CAWX Helobdella robusta Primary Ear...    34   0.43   3
(FE746659) CAYC3858.b1 CAYC Petrolisthes cinctipes heart, ne...    36   0.44   3
(FB656721) Sequence 55 from Patent EP1873257.                      36   0.44   3
(DD106004) COMPOSITIONS AND METHODS FOR THE INFERENCE OF PIG...    36   0.44   3
(EY303112) CAWX16534.fwd CAWX Helobdella robusta Primary Ear...    34   0.44   3
(AM453122) Vitis vinifera contig VV78X094877.6, whole genome...    44   0.45   2
(AB102778) Dictyostelium discoideum kin5 mRNA for kinesin-re...    40   0.45   3
(AC095340) Rattus norvegicus clone CH230-90P24, *** SEQUENCI...    42   0.45   2
(FI462709) CH322-39N16.x CHORI-322 Drosophila melanogaster g...    36   0.45   2
(AC084361) Homo sapiens 12 BAC RP11-364C11 (Roswell Park Can...    36   0.47   4
(EB908803) 9179489 ZF31 Danio rerio cDNA clone 3255587, mRNA...    36   0.47   3
(CQ339122) Sequence 13216 from Patent WO0157275.                   38   0.47   2
(CQ301927) Sequence 13032 from Patent WO0186003.                   38   0.47   2
(CQ264838) Sequence 13099 from Patent WO0157277.                   38   0.47   2
(CQ226696) Sequence 13535 from Patent WO0157273.                   38   0.47   2
(CQ203331) Sequence 5608 from Patent WO0157271.                    38   0.47   2
(CQ178982) Sequence 10378 from Patent WO0157274.                   38   0.47   2
(CQ143492) Sequence 13514 from Patent WO0157276.                   38   0.47   2
(CQ104790) Sequence 13649 from Patent WO0157272.                   38   0.47   2
(CQ073900) Sequence 9700 from Patent WO0157278.                    38   0.47   2
(CQ054655) Sequence 5475 from Patent WO0157270.                    38   0.47   2
(FD916825) CBOX19445.rev CBOX Volvox carteri f. nagariensis ...    34   0.48   3
(EY370567) CAXA12983.fwd CAXA Helobdella robusta Subtracted ...    34   0.49   3
(FD916826) CBOX19445.fwd CBOX Volvox carteri f. nagariensis ...    34   0.49   3
(FM966077) Glossina morsitans morsitans EST, clone GMsg24f01...    32   0.50   3
(FC313287) CAIC3830.rev CAIC Nematostella vectensis Nemve wh...    32   0.50   3
(EY938807) RS2DO01TF RS2(RS) Raphanus sativus cDNA 5', mRNA ...    32   0.51   3
(FD839762) CBGZ8191.rev CBGZ Volvox carteri f. nagariensis i...    34   0.52   3
(AM460376) Vitis vinifera contig VV78X232573.54, whole genom...    48   0.52   1
(AX323713) Sequence 201 from Patent WO0192565.                     48   0.52   1
(GM996061) Sequence 201 from Patent EP2014776.                     48   0.52   1
(AY587764) Homo sapiens opioid receptor, mu 1 (OPRM1) gene, ...    48   0.52   1
(AL136444) Human DNA sequence from clone RP3-366F13 on chrom...    48   0.52   1
(AC135143) Rattus norvegicus clone CH230-447I3, *** SEQUENCI...    48   0.52   1
(AC109094) Rattus norvegicus clone CH230-220O21, *** SEQUENC...    48   0.52   1
(AC027439) Homo sapiens chromosome 6 clone RP11-306O7 map 6,...    48   0.52   1
(CU463246) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.52   1
(AC178805) Strongylocentrotus purpuratus clone R3-22G01, WOR...    48   0.52   1
(AC168916) Bos taurus clone CH240-234K24, WORKING DRAFT SEQU...    48   0.52   1
(AC166212) Macropus eugenii clone ME_KBa-21M7, WORKING DRAFT...    48   0.52   1
(AC021745) Homo sapiens chromosome 11 clone RP11-339D1 map 1...    48   0.52   1
(AM610524) Entamoeba invadens IP1 GSS, clone inv127b01.q1k.        48   0.52   1
(CD525133) kw13d01.y1 Strongyloides ratti PA female naive pA...    48   0.52   1
(CD421482) ku84g06.y1 Strongyloides ratti PA female naive pA...    48   0.52   1
(FC820196) Sr_pAMT7_017a01_T7 S. ratti mixed stage pAMP Stro...    48   0.52   1
(FC819440) Sr_pAMT7_014n09_T7 S. ratti mixed stage pAMP Stro...    48   0.52   1
(FC697184) CAXX5965.fwd CAXX Lottia gigantea from male gonad...    48   0.52   1
(EY378358) CAXA17214.rev CAXA Helobdella robusta Subtracted ...    48   0.52   1
(CP000153) Sulfurimonas denitrificans DSM 1251, complete gen...    48   0.52   1
(EY350999) CAWZ17887.fwd CAWZ Helobdella robusta Primary Lat...    32   0.52   3
(ED557291) MUGQ_CH252P134B17T7_CN121_079 CHORI-252 Vervet Mo...    32   0.54   3
(BZ154236) CH230-360K5.TJ CHORI-230 Segment 2 Rattus norvegi...    36   0.54   3
(CQ340101) Sequence 14195 from Patent WO0157275.                   38   0.55   2
(CQ302920) Sequence 14025 from Patent WO0186003.                   38   0.55   2
(CQ265844) Sequence 14105 from Patent WO0157277.                   38   0.55   2
(CQ227675) Sequence 14514 from Patent WO0157273.                   38   0.55   2
(CQ204326) Sequence 6603 from Patent WO0157271.                    38   0.55   2
(CQ179957) Sequence 11353 from Patent WO0157274.                   38   0.55   2
(CQ144471) Sequence 14493 from Patent WO0157276.                   38   0.55   2
(CQ105786) Sequence 14645 from Patent WO0157272.                   38   0.55   2
(CQ074873) Sequence 10673 from Patent WO0157278.                   38   0.55   2
(CQ055613) Sequence 6433 from Patent WO0157270.                    38   0.55   2
(AC177975) Strongylocentrotus purpuratus clone R3-3051B24, W...    38   0.56   3
(AC179428) Strongylocentrotus purpuratus clone R3-1040L21, W...    44   0.59   4
(DH557239) Rattus norvegicus DNA, BAC clone: RNB1-067O03, 3'...    32   0.59   3
(EB235437) PEG003-C-210391-501 Normalized Pedal-Pleural Gang...    32   0.59   3
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117...    34   0.60   6
(FI177524) MUGQ_CH252P251H04T7_CN507_010 CHORI-252 Vervet Mo...    32   0.60   3
(BI039161) IL3-NT0280-240101-418-B08 NT0280 Homo sapiens cDN...    38   0.60   2
(BI038656) IL3-NT0280-220101-414-D12 NT0280 Homo sapiens cDN...    38   0.60   2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    36   0.61   12
(AC168576) Strongylocentrotus purpuratus clone R3-3065L18, W...    36   0.63   6
(CU762424) A BAC library has been constructed from PN40024 g...    44   0.64   2
(DH114075) Oryzias latipes Fosmid clone:GOLWFno374_i07, forw...    36   0.66   3
(EU623982) Penaeus monodon single whey acidic protein domain...    36   0.66   3
(FD247347) CBZF33519.g1 CBZF: Normalized blue catfish cDNA l...    36   0.66   3
(CE055643) tigr-gss-dog-17000322430322 Dog Library Canis lup...    30   0.68   3
(AC178392) Strongylocentrotus purpuratus clone R3-3108P3, WO...    40   0.68   3
(EJ326010) 1092963384575 Global-Ocean-Sampling_GS-28-01-01-1...    36   0.70   3
(FE114331) LV_HC_RA060F19f Litopenaeus vannamei hemocyte cDN...    36   0.72   2
(AC126011) Medicago truncatula clone mth2-24f16, complete se...    40   0.72   6
(FD709253) CAAA15312.fwd CAAA Petromyzon marinus Petromyzon ...    44   0.73   2
(AC181373) Strongylocentrotus purpuratus clone R3-49I20, WOR...    42   0.74   3
(AC181635) Strongylocentrotus purpuratus clone R3-3016A12, W...    44   0.74   5
(AQ432082) HS_5062_B1_B12_SP6E RPCI-11 Human Male BAC Librar...    44   0.78   2
(AC180121) Strongylocentrotus purpuratus clone R3-4007L5, WO...    40   0.82   6
(CQ327185) Sequence 1279 from Patent WO0157275.                    40   0.83   2
(CQ290229) Sequence 1334 from Patent WO0186003.                    40   0.83   2
(CQ253084) Sequence 1345 from Patent WO0157277.                    40   0.83   2
(CQ214489) Sequence 1328 from Patent WO0157273.                    40   0.83   2
(CQ199029) Sequence 1306 from Patent WO0157271.                    40   0.83   2
(CQ169884) Sequence 1280 from Patent WO0157274.                    40   0.83   2
(CQ131283) Sequence 1305 from Patent WO0157276.                    40   0.83   2
(CQ092471) Sequence 1330 from Patent WO0157272.                    40   0.83   2
(CQ065509) Sequence 1309 from Patent WO0157278.                    40   0.83   2
(CQ050463) Sequence 1283 from Patent WO0157270.                    40   0.83   2
(AC214739) Spermophilus tridecemlineatus clone VMRC20-541D11...    40   0.84   4
(Y11204) V.carteri gene encoding volvoxopsin.                      38   0.85   3
(CU607030) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   0.86   3
(EB308460) CNSN01-F-070065-501 Normalized CNS library (juven...    38   0.87   2
(AC179541) Strongylocentrotus purpuratus clone R3-6K14, WORK...    44   0.88   3
(AQ282632) RPCI11-79E24.TV RPCI-11 Homo sapiens genomic clon...    32   0.88   3
(AC201533) Strongylocentrotus purpuratus clone R3-3090N2, WO...    42   0.89   5
(CW835596) ET5849.Ds3.06.05.00.b.510 Arabidopsis thaliana La...    38   0.90   2
(G92908) S210P6034FD4.T0 BALB/cByJ Mus musculus STS genomic,...    36   0.91   2
(FE125660) LV_HP_RA02B14f Litopenaeus vannamei hepatopancrea...    40   0.91   2
(BW902609) Branchiostoma floridae cDNA, neurula clone:bfne02...    36   0.92   3
(AC177664) Strongylocentrotus purpuratus clone R3-1017N13, W...    40   0.95   4
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    32   0.96   10
(BW844852) Branchiostoma floridae cDNA, neurula clone:bfne02...    36   0.97   3
(AZ148912) SP_0048_A2_F05_T7 Strongylocentrotus purpuratus, ...    36   1.0    2
(EY375658) CAXA15744.fwd CAXA Helobdella robusta Subtracted ...    44   1.0    2
(AC178594) Strongylocentrotus purpuratus clone R3-3021N20, W...    42   1.0    6
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084...    36   1.0    4
(AC177129) Strongylocentrotus purpuratus clone R3-1035N5, WO...    44   1.1    2
(AL166032) Tetraodon nigroviridis genome survey sequence T7 ...    36   1.1    3
(CQ342731) Sequence 16825 from Patent WO0157275.                   32   1.1    3
(CQ305543) Sequence 16648 from Patent WO0186003.                   32   1.1    3
(CQ268507) Sequence 16768 from Patent WO0157277.                   32   1.1    3
(CQ230373) Sequence 17212 from Patent WO0157273.                   32   1.1    3
(CQ206930) Sequence 9207 from Patent WO0157271.                    32   1.1    3
(CQ182522) Sequence 13918 from Patent WO0157274.                   32   1.1    3
(CQ147139) Sequence 17161 from Patent WO0157276.                   32   1.1    3
(CQ108507) Sequence 17366 from Patent WO0157272.                   32   1.1    3
(CQ077489) Sequence 13289 from Patent WO0157278.                   32   1.1    3
(CQ058163) Sequence 8983 from Patent WO0157270.                    32   1.1    3
(CT737221) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   1.1    2
(AC178683) Strongylocentrotus purpuratus clone R3-3007B10, W...    34   1.1    2
(EB307505) CNSN01-F-068601-501 Normalized CNS library (juven...    36   1.1    2
(AC201241) Strongylocentrotus purpuratus clone R3-15K4, WORK...    34   1.1    2
(EH012324) USDA-FP_185236 Lysiphlebus testaceipes adult whol...    38   1.1    2
(AC174016) Strongylocentrotus purpuratus clone R3-1113P3, WO...    34   1.1    2
(AC180124) Strongylocentrotus purpuratus clone R3-4005K06, W...    34   1.1    2
(AC178691) Strongylocentrotus purpuratus clone R3-12F14, WOR...    34   1.1    2
(DR231524) 142950 CERES-148 Arabidopsis thaliana cDNA clone ...    36   1.1    2
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7...    36   1.1    8
(AJ495855) Paracentrotus lividus partial dnmt1 gene for DNA ...    38   1.1    3
(AC179840) Strongylocentrotus purpuratus clone R3-1012B12, W...    36   1.1    5
(EY356352) CAWZ4312.rev CAWZ Helobdella robusta Primary Late...    42   1.2    2
(CN807706) HDAH02D04.F Leech Haementeria depressa library HD...    34   1.2    3
(AI525056) promrna-5.E07.r bvtumor Homo sapiens cDNA 5', mRN...    38   1.2    2
(AC007967) Homo sapiens clone NH0373F14, complete sequence.        36   1.2    6
(GC693865) Sequence 3238 from patent US 6812339.                   32   1.2    3
(AC179987) Strongylocentrotus purpuratus clone R3-17G12, WOR...    36   1.2    4
(EB041357) lk_hhte_0006k21.pDNRF2 lk_hhte Hippoglossus hippo...    44   1.2    2
(BX212218) Danio rerio genomic clone DKEY-257I6, genomic sur...    36   1.2    2
(AC180690) Strongylocentrotus purpuratus clone R3-3086M14, W...    38   1.2    4
(CU655881) P.sativum DNA sequence from clone JICPSV-598E15.        40   1.2    3
(BX927349) Zebrafish DNA sequence from clone DKEY-84K15 in l...    44   1.3    4
(CQ343612) Sequence 17706 from Patent WO0157275.                   38   1.3    2
(CQ306551) Sequence 17656 from Patent WO0186003.                   38   1.3    2
(CQ269501) Sequence 17762 from Patent WO0157277.                   38   1.3    2
(CQ231327) Sequence 18166 from Patent WO0157273.                   38   1.3    2
(CQ207851) Sequence 10128 from Patent WO0157271.                   38   1.3    2
(CQ183455) Sequence 14851 from Patent WO0157274.                   38   1.3    2
(CQ148071) Sequence 18093 from Patent WO0157276.                   38   1.3    2
(CQ109420) Sequence 18279 from Patent WO0157272.                   38   1.3    2
(CQ078450) Sequence 14250 from Patent WO0157278.                   38   1.3    2
(CQ059038) Sequence 9858 from Patent WO0157270.                    38   1.3    2
(EG521417) AYBKR77TR pooled cDNA populations Arabidopsis tha...    36   1.3    2
(CQ275423) Sequence 23684 from Patent WO0157277.                   36   1.3    3
(CQ237807) Sequence 24646 from Patent WO0157273.                   36   1.3    3
(CQ187089) Sequence 18485 from Patent WO0157274.                   36   1.3    3
(CQ115774) Sequence 24633 from Patent WO0157272.                   36   1.3    3
(CQ081237) Sequence 17037 from Patent WO0157278.                   36   1.3    3
(EG521416) AYBKR77TF pooled cDNA populations Arabidopsis tha...    36   1.3    2
(AY152858) Dictyostelium discoideum diacylglycerol kinase pr...    44   1.3    2
(CU407189) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   1.3    3
(AJ012333) Buchnera aphidicola plasmid pBTc2, trpE and trpG ...    46   1.3    2
(EY313115) CAWX24775.rev CAWX Helobdella robusta Primary Ear...    40   1.3    2
(EY360048) CAWZ6827.rev CAWZ Helobdella robusta Primary Late...    36   1.3    2
(AZ777436) 2M0011P18R Mouse 10kb plasmid UUGC1M library Mus ...    38   1.3    3
(EY364270) CAWZ9239.fwd CAWZ Helobdella robusta Primary Late...    32   1.3    3
(CE302720) tigr-gss-dog-17000360214802 Dog Library Canis lup...    38   1.3    2
(AY753023) Penaeus monodon clone t2801 microsatellite sequence.    32   1.3    3
(AC146405) Pan troglodytes chromosome UNK clone RP43-42G14, ...    34   1.3    2
(FD809935) CBGZ1482.rev CBGZ Volvox carteri f. nagariensis i...    36   1.3    2
(EI724921) 2B421021J02TF BAC library from breast tumor sampl...    36   1.3    3
(FE773678) CCAG7280.g1 CCAG Petrolisthes cinctipes heart, gi...    44   1.3    2
(AC179493) Strongylocentrotus purpuratus clone R3-1035K7, WO...    36   1.3    6
(DW064571) CLLY4222.b1_L24.ab1 CLL(XYZ) lettuce saligna Lact...    44   1.3    2
(EY317889) CAWX567.rev CAWX Helobdella robusta Primary Early...    36   1.4    3
(DT409462) JGI_CABI9617.fwd NIH_XGC_tropOvi1 Xenopus (Silura...    36   1.4    2
(AC178993) Strongylocentrotus purpuratus clone R3-3122L9, WO...    38   1.4    5
(DT404140) JGI_CABI6591.fwd NIH_XGC_tropOvi1 Xenopus (Silura...    36   1.4    2
(FE116688) LV_HC_RA064H10r Litopenaeus vannamei hemocyte cDN...    38   1.4    2
(EY303276) CAWX16622.rev CAWX Helobdella robusta Primary Ear...    38   1.4    2
(FK751991) av02068m18r1.1 Symbiotic sea anemone (Anemonia vi...    32   1.4    3
(AF079446) Dictyostelium discoideum developmental protein DG...    36   1.4    2
(DT411126) JGI_CABI10595.fwd NIH_XGC_tropOvi1 Xenopus (Silur...    36   1.4    2
(AG067904) Pan troglodytes DNA, clone: PTB-058A12.R.               36   1.4    3
(DR400542) TKN059F06_628606 Taraxacum kok-saghyz root cDNA l...    36   1.4    3
(BJ326179) Dictyostelium discoideum cDNA clone:dda15h14, 5' ...    36   1.4    2
(EY294067) CAWX11471.rev CAWX Helobdella robusta Primary Ear...    38   1.4    2
(EY367510) CAXA1130.fwd CAXA Helobdella robusta Subtracted L...    38   1.5    2
(FE098880) LV_HC_RA016H08f Litopenaeus vannamei hemocyte cDN...    40   1.5    2
(FE098879) LV_HC_RA016F08r Litopenaeus vannamei hemocyte cDN...    40   1.5    2
(EY306876) CAWX20157.fwd CAWX Helobdella robusta Primary Ear...    36   1.5    3
(EY822211) PT11-C1-901-044-B06-CT.F Poncirus trifoliata leaf...    40   1.5    2
(DW068258) CLLY8022.b1_L14.ab1 CLL(XYZ) lettuce saligna Lact...    36   1.5    2
(AJ296700) Picea abies ATC microsatellite DNA, clone EATC1D03.     32   1.5    3
(DH514353) Rattus norvegicus DNA, BAC clone: RNB1-009I02, 3'...    32   1.5    3
(AC177248) Strongylocentrotus purpuratus clone R3-1034D07, W...    44   1.5    4
(AB152338) Homo sapiens DNA, STS on chromosome 3, D3S1398i, ...    36   1.5    3
(EG527718) AYBKM59TR pooled cDNA populations Arabidopsis tha...    36   1.5    2
(EY306767) CAWX20096.rev CAWX Helobdella robusta Primary Ear...    32   1.5    3
(EI797300) CHORI518026J20TF BAC library from the breast cell...    32   1.5    3
(EY340018) CAWZ10056.rev CAWZ Helobdella robusta Primary Lat...    32   1.5    3
(EG527717) AYBKM59TF pooled cDNA populations Arabidopsis tha...    36   1.5    2
(EY373930) CAXA14813.fwd CAXA Helobdella robusta Subtracted ...    36   1.6    2
(EG527720) AYBKM60TR pooled cDNA populations Arabidopsis tha...    36   1.6    2
(EY326324) CAWY11523.fwd CAWY Helobdella robusta Subtracted ...    38   1.6    2
(EY333546) CAWY5763.fwd CAWY Helobdella robusta Subtracted E...    36   1.6    3
(EF175461) Glycine max cultivar Williams 82 microsomal omega...    44   1.6    2
(EF175462) Glycine max cultivar PI 361088B microsomal omega ...    44   1.6    2
(EG527719) AYBKM60TF pooled cDNA populations Arabidopsis tha...    36   1.6    2
(FD861103) CBHA9013.fwd CBHA Volvox carteri f. nagariensis i...    36   1.6    3
(DQ790003) Ceratosolen bisulcatus clone CAG8 microsatellite ...    32   1.6    3
(AC184709) Pan troglodytes BAC clone CH251-631F3 from chromo...    38   1.6    4
(EY552103) CAWT19349.rev CAWT Capitella sp. I ECS-2004 Prima...    34   1.6    3
(DH801469) Rattus norvegicus DNA, BAC clone: RNB1-397C03, 5'...    32   1.6    3
(BE526847) M66H23STM Arabidopsis developing seed Arabidopsis...    36   1.7    2
(EY318380) CAWX6350.rev CAWX Helobdella robusta Primary Earl...    36   1.7    3
(DH693643) Rattus norvegicus DNA, BAC clone: RNB1-251E09, 5'...    36   1.7    3
(AY645143) Cryptosporidium hominis clone C12-4-P2 GP60 gene,...    36   1.7    3
(DQ217942) Homo sapiens EGF-like module containing mucin-lik...    36   1.7    3
(AC177360) Strongylocentrotus purpuratus clone R3-52F23, WOR...    36   1.7    6
(AC111949) Rattus norvegicus clone CH230-212L5, *** SEQUENCI...    44   1.8    3
(BP561940) Arabidopsis thaliana cDNA clone:RAFL09-34-F01, 5'...    36   1.8    2
(DE213992) Trifolium pratense DNA, clone:RCG02352.                 36   1.8    3
(FE116268) LV_HC_RA064O07f Litopenaeus vannamei hemocyte cDN...    36   1.8    3
(EY367558) CAXA11321.fwd CAXA Helobdella robusta Subtracted ...    36   1.8    3
(EX526715) MTGland-A072_2007-08-20/MTGland-72_G01_005_1 Medi...    36   1.8    2
(AL445564) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    40   1.8    9
(EY343618) CAWZ12603.fwd CAWZ Helobdella robusta Primary Lat...    36   1.8    3
(EY324628) CAWY10388.rev CAWY Helobdella robusta Subtracted ...    34   1.8    3
(FJ362375) Caenorhabditis sp. PS1010 contig JD01, partial se...    38   1.8    4
(AC231056) Bos taurus clone CH240-492H3, WORKING DRAFT SEQUE...    38   1.8    4
(EY341971) CAWZ11457.rev CAWZ Helobdella robusta Primary Lat...    30   1.8    4
(EY370459) CAXA12926.fwd CAXA Helobdella robusta Subtracted ...    34   1.9    3
(FM992691) Candida dubliniensis CD36 chromosome 4, complete ...    36   1.9    14
(EY310009) CAWX21912.fwd CAWX Helobdella robusta Primary Ear...    36   1.9    3
(AC180849) Strongylocentrotus purpuratus clone R3-3067P14, W...    44   1.9    4
(DY823155) CTOY14888.b1_P02.ab1 CTO(XYZ) dandelion Taraxacum...    36   1.9    3
(AC181145) Strongylocentrotus purpuratus clone R3-3037J19, W...    36   1.9    4
(EY552104) CAWT19349.fwd CAWT Capitella sp. I ECS-2004 Prima...    34   2.0    3
(EY331432) CAWY417.rev CAWY Helobdella robusta Subtracted Ea...    32   2.0    3
(AC181777) Strongylocentrotus purpuratus clone R3-1033B12, W...    38   2.0    5
(EF017107) Chlamys farreri clone CFBD140 microsatellite sequ...    40   2.0    2
(AC179552) Strongylocentrotus purpuratus clone R3-6P17, WORK...    38   2.0    4
(AL023586) Human DNA sequence from clone RP3-426F10 on chrom...    44   2.0    2
(CR855185) Oryza sativa genomic DNA, chromosome 4, BAC clone...    38   2.0    2
(DY822871) CTOY14620.b1_G07.ab1 CTO(XYZ) dandelion Taraxacum...    36   2.0    3
(DY805898) CTOX14055.b1_M10.ab1 CTO(XYZ) dandelion Taraxacum...    36   2.1    3

>(AU062024) Dictyostelium discoideum slug cDNA, clone SLH245.
          Length = 294

 Score =  513 bits (259), Expect = e-141
 Identities = 259/259 (100%)
 Strand = Plus / Plus


Query: 1   caccatcaacatcaccatcaacaacttcagttgcaccaaataaacaaccattagaaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   caccatcaacatcaccatcaacaacttcagttgcaccaaataaacaaccattagaaattt 60


Query: 61  catcttcaaatataaaacaaccattatcatcatcattaccagctgcatcgccaaccacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  catcttcaaatataaaacaaccattatcatcatcattaccagctgcatcgccaaccacaa 120


Query: 121 catcaacaccttcctctgtagtaaataaaaaaccaaataatattataaattctccatcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 catcaacaccttcctctgtagtaaataaaaaaccaaataatattataaattctccatcca 180


Query: 181 cctcaactgaaagtttaatttcatcaccactttcaaaattcacaactccattgggttcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cctcaactgaaagtttaatttcatcaccactttcaaaattcacaactccattgggttcaa 240


Query: 241 ttagtggtccaaataacat 259
           |||||||||||||||||||
Sbjct: 241 ttagtggtccaaataacat 259

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 895,836,205
Number of extensions: 61753457
Number of successful extensions: 6047801
Number of sequences better than 10.0: 1426
Length of query: 798
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 774
Effective length of database: 99,340,224,878
Effective search space: 76889334055572
Effective search space used: 76889334055572
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.14
Homology vs Protein 
Query= Contig-U01321-1 (Contig-U01321-1Q) /CSM_Contig/Contig-U01321-1Q.Seq.d
         (798 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54235_3(Z54235|pid:none) Caenorhabditis elegans Cosmid C09G9, c...    40   0.088
T19156(T19156;T24830) probable metal binding protein T11B7.4a - ...    40   0.088
Z54235_5(Z54235|pid:none) Caenorhabditis elegans Cosmid C09G9, c...    40   0.088
BC159222_1(BC159222|pid:none) Danio rerio four and a half LIM do...    39   0.19
BT056486_1(BT056486|pid:none) Salmo salar clone ssal-rgb2-624-31...    39   0.25
BT079181_1(BT079181|pid:none) Esox lucius clone eluc-evq-511-060...    39   0.25
BT049822_1(BT049822|pid:none) Salmo salar clone ssal-rgb2-509-14...    39   0.25
BT082241_1(BT082241|pid:none) Anoplopoma fimbria clone afim-evh-...    38   0.33
BC083298_1(BC083298|pid:none) Danio rerio zgc:101840, mRNA (cDNA...    37   0.57
BX936423_2(BX936423|pid:none) Zebrafish DNA sequence from clone ...    37   0.57
BC160748_1(BC160748|pid:none) Xenopus laevis hypothetical protei...    37   0.74
AE014298_2577(AE014298|pid:none) Drosophila melanogaster chromos...    36   1.3
BT056943_1(BT056943|pid:none) Salmo salar clone ssal-rgb2-609-36...    35   2.8
(Q1JQB5) RecName: Full=Filamin-binding LIM protein 1;          S...    35   2.8
CS300582_1(CS300582|pid:none) Sequence 90 from Patent EP1661986.       35   3.7
AJ493397_1(AJ493397|pid:none) Suberites domuncula partial mRNA f...    35   3.7
(Q5REN1) RecName: Full=Filamin-binding LIM protein 1;          S...    35   3.7
AL450998_6(AL450998|pid:none) Human DNA sequence from clone RP11...    35   3.7
(Q8WUP2) RecName: Full=Filamin-binding LIM protein 1;          S...    35   3.7
AF459643_1(AF459643|pid:none) Homo sapiens filamin-binding LIM p...    35   3.7
BT003565_1(BT003565|pid:none) Drosophila melanogaster LP02021 fu...    34   4.8
AE013599_2227(AE013599|pid:none) Drosophila melanogaster chromos...    34   4.8
AE013599_2223(AE013599|pid:none) Drosophila melanogaster chromos...    34   4.8
AE013599_2226(AE013599|pid:none) Drosophila melanogaster chromos...    34   4.8
AJ002382_1(AJ002382|pid:none) Dictyostelium discoideum mRNA for ...    34   4.8
(Q9DCT8) RecName: Full=Cysteine-rich protein 2;          Short=C...    34   6.3
(Q0VFX8) RecName: Full=Cysteine-rich protein 2;  &BC118323_1(BC1...    34   6.3
(A5H447) RecName: Full=Zyxin;  &EF051627_1(EF051627|pid:none)          34   6.3
(P36201) RecName: Full=Cysteine-rich protein 2;          Short=C...    34   6.3
CR382125_572(CR382125|pid:none) Kluyveromyces lactis strain NRRL...    33   8.2

>Z54235_3(Z54235|pid:none) Caenorhabditis elegans Cosmid C09G9,
           complete sequence.  &Z54237_8(Z54237|pid:none)
          Length = 684

 Score = 40.0 bits (92), Expect = 0.088
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +3

Query: 573 CQSCFDECSNICPRCNNV---VQYRCKNHLGKKWHPDCLS 683
           C+SCF++  +I PRCN     +   C N L KKWHP C +
Sbjct: 560 CESCFEQ--HIAPRCNKCSKPIISDCLNALQKKWHPTCFT 597

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 693,396,180
Number of extensions: 8972966
Number of successful extensions: 19628
Number of sequences better than 10.0: 30
Number of HSP's gapped: 19608
Number of HSP's successfully gapped: 30
Length of query: 266
Length of database: 1,051,180,864
Length adjustment: 126
Effective length of query: 140
Effective length of database: 643,374,430
Effective search space: 90072420200
Effective search space used: 90072420200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.84  gvh: 0.54  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.29
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 28.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall

>> prediction for Contig-U01321-1 is mit
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 2
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0