NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U06460-1
Contig ID Contig-U06460-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U06460-1 (Contig-U06460-1Q) /CSM_Contig/Contig-U06460-1Q.Seq.d
AGATGAATCACTTCCACAGGCTGAAAAGGAAGCAGTGATTCCAGATGAAA
TTTTTCAAATGACAGCAGATGAAGTCAATAGAAAAGCAAAACTATTAGAA
AATGAAACAAAAGTATTAAGAAGTGAACATATCTCTAAACATTTAGAAAT
GGATTCCATACAAAAAAGAATTAAAGAAAATAATGATAAATTACAAGTTA
ATACGCAATTACCACATTTAGTTGCAAATGTTGTAGAAATTATTGATATG
GTTTTAGATGGTGAAACTCAACCTTCAAAATGTGTTGTAGTTAAAGCTTC
AACTAGACAAACAATATTTTTAGCCTATCCAGGTATTGTAGATGTAGATA
AATTAAGACCAGGTGATCTTGTTGGTATTAACAAAGATAGCTATATTATT
CTTGATACTTTACCACCAGAGTATGTAATATAAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAAAAATTAGAAAAAAAAAAAAAAAAAA
Gap no gap
Contig length 534
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 1971946
End point 1972480
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U06460
List of clone(s) 

est1=VSC478Z,1,535
Translated Amino Acid sequence 
DESLPQAEKEAVIPDEIFQMTADEVNRKAKLLENETKVLRSEHISKHLEMDSIQKRIKEN
NDKLQVNTQLPHLVANVVEIIDMVLDGETQPSKCVVVKASTRQTIFLAYPGIVDVDKLRP
GDLVGINKDSYIILDTLPPEYVI*iiiiiiiiiiiiiiiiiiiiiiiiikirkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
r*itstg*kgssdsr*nfsndsr*sq*ksktirk*nksikk*tyl*tfrngfhtkkn*rk
***its*yaittfsckccrny*ygfrw*nstfkmccs*sfn*tnnifslsrycrcr*ikt
r*scwy*qr*lyys*yfttrvcninnnnnnnnnnnnnnnnnnnnnnnnnkn*kkkkkk


Frame B:
DESLPQAEKEAVIPDEIFQMTADEVNRKAKLLENETKVLRSEHISKHLEMDSIQKRIKEN
NDKLQVNTQLPHLVANVVEIIDMVLDGETQPSKCVVVKASTRQTIFLAYPGIVDVDKLRP
GDLVGINKDSYIILDTLPPEYVI*iiiiiiiiiiiiiiiiiiiiiiiiikirkkkkk


Frame C:
mnhfhrlkrkq*fqmkffk*qqmksiekqny*kmkqky*evnislni*kwipykkelkki
minyklirnyhi*lqml*klliwf*mvklnlqnvl*lklqldkqyf*piqvl*m*in*dq
villvltkiailflilyhqsm*yk*************************klekkkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06460-1 (Contig-U06460-1Q)
/CSM_Contig/Contig-U06460-1Q.Seq.d
         (534 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06460-1 (Contig-U06460-1Q) /CSM_Contig/Conti...   842  0.0
Contig-U02917-1 (Contig-U02917-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U03115-1 (Contig-U03115-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U12066-1 (Contig-U12066-1Q) /CSM_Contig/Conti...    36  0.037
Contig-U10880-1 (Contig-U10880-1Q) /CSM_Contig/Conti...    36  0.037
Contig-U01508-1 (Contig-U01508-1Q) /CSM_Contig/Conti...    36  0.037
Contig-U12565-1 (Contig-U12565-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U12436-1 (Contig-U12436-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U12145-1 (Contig-U12145-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U10362-1 (Contig-U10362-1Q) /CSM_Contig/Conti...    34  0.15

>Contig-U06460-1 (Contig-U06460-1Q) /CSM_Contig/Contig-U06460-1Q.Seq.d
          Length = 534

 Score =  842 bits (425), Expect = 0.0
 Identities = 425/425 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatgaatcacttccacaggctgaaaaggaagcagtgattccagatgaaatttttcaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agatgaatcacttccacaggctgaaaaggaagcagtgattccagatgaaatttttcaaat 60

                                                                       
Query: 61  gacagcagatgaagtcaatagaaaagcaaaactattagaaaatgaaacaaaagtattaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gacagcagatgaagtcaatagaaaagcaaaactattagaaaatgaaacaaaagtattaag 120

                                                                       
Query: 121 aagtgaacatatctctaaacatttagaaatggattccatacaaaaaagaattaaagaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagtgaacatatctctaaacatttagaaatggattccatacaaaaaagaattaaagaaaa 180

                                                                       
Query: 181 taatgataaattacaagttaatacgcaattaccacatttagttgcaaatgttgtagaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taatgataaattacaagttaatacgcaattaccacatttagttgcaaatgttgtagaaat 240

                                                                       
Query: 241 tattgatatggttttagatggtgaaactcaaccttcaaaatgtgttgtagttaaagcttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tattgatatggttttagatggtgaaactcaaccttcaaaatgtgttgtagttaaagcttc 300

                                                                       
Query: 301 aactagacaaacaatatttttagcctatccaggtattgtagatgtagataaattaagacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aactagacaaacaatatttttagcctatccaggtattgtagatgtagataaattaagacc 360

                                                                       
Query: 361 aggtgatcttgttggtattaacaaagatagctatattattcttgatactttaccaccaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aggtgatcttgttggtattaacaaagatagctatattattcttgatactttaccaccaga 420

                
Query: 421 gtatg 425
           |||||
Sbjct: 421 gtatg 425


>Contig-U02917-1 (Contig-U02917-1Q) /CSM_Contig/Contig-U02917-1Q.Seq.d
          Length = 1443

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 169  aattaaagaaaataatgataaatt 192
            ||||||| ||||||||||||||||
Sbjct: 1038 aattaaaaaaaataatgataaatt 1015


>Contig-U03115-1 (Contig-U03115-1Q) /CSM_Contig/Contig-U03115-1Q.Seq.d
          Length = 1397

 Score = 38.2 bits (19), Expect = 0.009
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 181  taatgataaattacaagttaata 203
            ||||||||||||| |||||||||
Sbjct: 1392 taatgataaattaaaagttaata 1370


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6070
Number of Sequences: 6905
Number of extensions: 6070
Number of successful extensions: 735
Number of sequences better than 10.0: 256
length of query: 534
length of database: 5,674,871
effective HSP length: 16
effective length of query: 518
effective length of database: 5,564,391
effective search space: 2882354538
effective search space used: 2882354538
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11. 8
Homology vs DNA 
Query= Contig-U06460-1 (Contig-U06460-1Q) /CSM_Contig/Contig-U06460-1Q.Seq.d
         (534 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU262593) Dictyostelium discoideum vegetative cDNA clone:VS...   842   0.0    1
(AU033494) Dictyostelium discoideum slug cDNA, clone SLA895.       80   9e-11  1
(EH015778) USDA-FP_188345 Lysiphlebus testaceipes adult whol...    64   5e-06  1
(EH013674) USDA-FP_186451 Lysiphlebus testaceipes adult whol...    64   5e-06  1
(AC217622) Medicago truncatula chromosome 2 clone mth2-188j2...    56   0.001  1
(AM398681) Flavobacterium psychrophilum JIP02/86 complete ge...    52   0.021  1
(AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5...    40   0.073  5
(CB541866) PVEPSE3004H07.g Common bean seedling EST Library ...    50   0.082  1
(CB540208) PVEPSE2016C11.g Common bean seedling EST Library ...    50   0.082  1
(CA905853) PCSC20052 Scarlet Runner Bean Suspensor Region Tr...    50   0.082  1
(CA905852) PCSC17338 Scarlet Runner Bean Suspensor Region Tr...    50   0.082  1
(FG932159) UCRVU09_CCNT11742_b1 Cowpea UCR 707 Mixed Tissue ...    50   0.082  1
(FG911821) UCRVU08_CCNS7988_b1 Cowpea IT97K-461-4 Mixed Tiss...    50   0.082  1
(FG875296) UCRVU07_CCNP10627_b1 Cowpea UCR 779 Mixed Tissue ...    50   0.082  1
(FG858850) UCRVU05_CCNN22067_b1 Cowpea IT84S-2049 Mixed Tiss...    50   0.082  1
(FG858273) UCRVU05_CCNN21737_b1 Cowpea IT84S-2049 Mixed Tiss...    50   0.082  1
(FG846678) UCRVU05_CCNN14708_b1 Cowpea IT84S-2049 Mixed Tiss...    50   0.082  1
(FG843077) UCRVU05_CCNN5548_b1 Cowpea IT84S-2049 Mixed Tissu...    50   0.082  1
(FG817440) UCRVU04_CCNI4145_b1 Cowpea 524B Mixed Tissue and ...    50   0.082  1
(FG814843) UCRVU04_CCNI2627_b1 Cowpea 524B Mixed Tissue and ...    50   0.082  1
(FG813415) UCRVU04_CCNI1797_b1 Cowpea 524B Mixed Tissue and ...    50   0.082  1
(FF554769) MOPEC52TF MOP Vigna unguiculata cDNA 5', mRNA seq...    50   0.082  1
(FF400044) MOOEN84TF MOO Vigna unguiculata cDNA 5', mRNA seq...    50   0.082  1
(FF397376) MOOED92TF MOO Vigna unguiculata cDNA 5', mRNA seq...    50   0.082  1
(EU493803) Drosophila waddingtoni voucher 105707 tRNA-Leu ge...    48   0.32   1
(EU493802) Drosophila waddingtoni voucher 105687 tRNA-Leu ge...    48   0.32   1
(EU493799) Drosophila percnosoma voucher 105685 tRNA-Leu gen...    48   0.32   1
(EU493781) Drosophila conformis voucher 105686 tRNA-Leu gene...    48   0.32   1
(EU493780) Drosophila comatifemora voucher 109459 tRNA-Leu g...    48   0.32   1
(EU493779) Drosophila comatifemora voucher 106342 tRNA-Leu g...    48   0.32   1
(EU493773) Drosophila adunca voucher 105818 tRNA-Leu gene, p...    48   0.32   1
(EU493742) Drosophila paramelanica voucher 109372 tRNA-Leu g...    48   0.32   1
(EU493741) Drosophila micromelanica voucher 109371 tRNA-Leu ...    48   0.32   1
(AC203005) Zea mays chromosome 9 clone CH201-155N16; ZMMBBc0...    48   0.32   1
(AC195993) Zea mays chromosome 9 clone CH201-180E9; ZMMBBc01...    48   0.32   1
(EI204298) MUGQ_CH252P197K24Sp6_CN305_086 CHORI-252 Vervet M...    48   0.32   1
(FH182293) CHO_OF3423xa14r1.ab1 CHO_OF3 Nicotiana tabacum ge...    40   0.62   2
(EK405342) 1095500039589 Global-Ocean-Sampling_GS-31-01-01-1...    36   0.65   2
(DX434405) BE1089_C11_R IASMA L1 HindIII BAC library Vitis v...    36   0.90   2
(AL135790) Human DNA sequence from clone RP11-87N24 on chrom...    38   1.2    4
(AE014177) Mus musculus piebald deletion region section 5 of...    46   1.3    1
(AC121574) Mus musculus BAC clone RP23-241E9 from 14, comple...    46   1.3    1
(AL157937) Human DNA sequence from clone RP11-408N14 on chro...    46   1.3    1
(AC117391) Homo sapiens 3 BAC RP11-3J15 (Roswell Park Cancer...    46   1.3    1
(AC078793) Homo sapiens 3 BAC RP11-693A13 (Roswell Park Canc...    46   1.3    1
(AC022471) Genomic Sequence For Homo sapiens Clone 202M16 Fr...    46   1.3    1
(AC145715) Homo sapiens chromosome 16 clone XXfos-84747D11, ...    46   1.3    1
(AC102683) Mus musculus clone RP24-114C2, WORKING DRAFT SEQU...    46   1.3    1
(AC098564) Homo sapiens chromosome 3 clone RP11-484I19, WORK...    46   1.3    1
(AC025027) Homo sapiens chromosome 3 clone RP11-693A13, WORK...    46   1.3    1
(EK554965) 1095516156299 Global-Ocean-Sampling_GS-32-01-01-1...    46   1.3    1
(EK212861) 1095460105094 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.3    1
(CE490041) tigr-gss-dog-17000365581675 Dog Library Canis lup...    46   1.3    1
(CC951336) BOIGU76TF BO_1.4_1.6_KB_nuc Brassica oleracea gen...    46   1.3    1
(FH294959) CHO_OF4221xn13f1.ab1 CHO_OF4 Nicotiana tabacum ge...    42   2.3    2
(EJ544948) 1092956077469 Global-Ocean-Sampling_GS-29-01-01-1...    42   2.4    2
(EJ223126) 1092351297788 Global-Ocean-Sampling_GS-27-01-01-1...    38   2.5    2
(BH154959) ENTSK70TR Entamoeba histolytica Sheared DNA Entam...    36   2.5    2
(AC003029) Homo sapiens 12 PAC RP3-462E2 (Roswell Park Cance...    32   2.5    2
(CT573467) Zebrafish DNA sequence from clone DKEY-203O21 in ...    32   2.6    2
(AP000431) Homo sapiens genomic DNA, chromosome 21q21.1-q21....    40   2.7    4
(EJ042921) 1095454101443 Global-Ocean-Sampling_GS-26-01-01-1...    32   3.4    2
(AC118084) Rattus norvegicus clone CH230-59H21, *** SEQUENCI...    36   3.7    4
(AC172725) Callicebus moloch clone LB5-364C23, WORKING DRAFT...    44   4.0    4
(CU468456) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   4.2    3
(AP001675) Homo sapiens genomic DNA, chromosome 21q, section...    40   4.4    6
(AC209483) Saimiri boliviensis boliviensis clone CH254-194L2...    40   4.4    5
(CR391931) Zebrafish DNA sequence from clone DKEY-267P8 in l...    44   5.0    1
(AC158995) Mus musculus BAC clone RP24-81K2 from chromosome ...    44   5.0    1
(AC187619) Pan troglodytes BAC clone CH251-512F18 from chrom...    44   5.0    1
(AM438956) Vitis vinifera contig VV78X125026.19, whole genom...    44   5.0    1
(DJ386615) Diagnosis of Diseases Associated with Metastasis.       44   5.0    1
(AX348977) Sequence 435 from Patent WO0202807.                     44   5.0    1
(AX345978) Sequence 1049 from Patent WO0200928.                    44   5.0    1
(AX281411) Sequence 75 from Patent WO0177376.                      44   5.0    1
(AE014827) Plasmodium falciparum 3D7 chromosome 14 section 1...    44   5.0    1
(AC004594) Homo sapiens PAC clone RP5-1101C3 from 7, complet...    44   5.0    1
(AC158004) Bos taurus clone CH240-213A10, WORKING DRAFT SEQU...    44   5.0    1
(AC157255) Rhinolophus ferrumequinum clone VMRC7-132C8, WORK...    44   5.0    1
(AC222197) Bos taurus clone CH240-411N16, WORKING DRAFT SEQU...    44   5.0    1
(AC218047) Bos taurus clone CH240-213A20, WORKING DRAFT SEQU...    44   5.0    1
(AC208277) Nomascus leucogenys leucogenys clone CH271-297J18...    44   5.0    1
(AC206869) Zea mays chromosome 8 clone CH201-170N19; ZMMBBc0...    44   5.0    1
(AC191472) Saimiri boliviensis boliviensis clone CH254-131F5...    44   5.0    1
(AC183699) Aotus nancymaae clone CH258-202B9, WORKING DRAFT ...    44   5.0    1
(AC174618) Aotus nancymaae clone CH258-73M10, WORKING DRAFT ...    44   5.0    1
(AC169170) Rhinolophus ferrumequinum clone VMRC7-338P21, WOR...    44   5.0    1
(BH497270) BOGGU94TR BOGG Brassica oleracea genomic clone BO...    44   5.0    1
(BH156797) ENTRQ84TR Entamoeba histolytica Sheared DNA Entam...    44   5.0    1
(AZ686826) ENTKZ83TF Entamoeba histolytica Sheared DNA Entam...    44   5.0    1
(AZ682659) ENTIR69TR Entamoeba histolytica Sheared DNA Entam...    44   5.0    1
(AZ670589) ENTHW59TF Entamoeba histolytica Sheared DNA Entam...    44   5.0    1
(AZ541317) ENTDF74TF Entamoeba histolytica Sheared DNA Entam...    44   5.0    1
(AZ540992) ENTDS74TR Entamoeba histolytica Sheared DNA Entam...    44   5.0    1
(ET793246) CHO_OF656xe22r1.ab1 CHO_OF Nicotiana tabacum geno...    44   5.0    1
(EJ330986) 1092963435503 Global-Ocean-Sampling_GS-28-01-01-1...    44   5.0    1
(EJ291119) 1095383002424 Global-Ocean-Sampling_GS-27-01-01-1...    44   5.0    1
(EJ245603) 1095335018189 Global-Ocean-Sampling_GS-27-01-01-1...    44   5.0    1
(EI461569) PV_GBa0065E03.f PV_GBa Phaseolus vulgaris genomic...    44   5.0    1
(B27320) T4M24TF TAMU Arabidopsis thaliana genomic clone T4M...    44   5.0    1

>(AU262593) Dictyostelium discoideum vegetative cDNA clone:VSC478,
           3' end single read.
          Length = 535

 Score =  842 bits (425), Expect = 0.0
 Identities = 425/425 (100%)
 Strand = Plus / Plus


Query: 1   agatgaatcacttccacaggctgaaaaggaagcagtgattccagatgaaatttttcaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agatgaatcacttccacaggctgaaaaggaagcagtgattccagatgaaatttttcaaat 60


Query: 61  gacagcagatgaagtcaatagaaaagcaaaactattagaaaatgaaacaaaagtattaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gacagcagatgaagtcaatagaaaagcaaaactattagaaaatgaaacaaaagtattaag 120


Query: 121 aagtgaacatatctctaaacatttagaaatggattccatacaaaaaagaattaaagaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagtgaacatatctctaaacatttagaaatggattccatacaaaaaagaattaaagaaaa 180


Query: 181 taatgataaattacaagttaatacgcaattaccacatttagttgcaaatgttgtagaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taatgataaattacaagttaatacgcaattaccacatttagttgcaaatgttgtagaaat 240


Query: 241 tattgatatggttttagatggtgaaactcaaccttcaaaatgtgttgtagttaaagcttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tattgatatggttttagatggtgaaactcaaccttcaaaatgtgttgtagttaaagcttc 300


Query: 301 aactagacaaacaatatttttagcctatccaggtattgtagatgtagataaattaagacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aactagacaaacaatatttttagcctatccaggtattgtagatgtagataaattaagacc 360


Query: 361 aggtgatcttgttggtattaacaaagatagctatattattcttgatactttaccaccaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aggtgatcttgttggtattaacaaagatagctatattattcttgatactttaccaccaga 420


Query: 421 gtatg 425
           |||||
Sbjct: 421 gtatg 425

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 588,043,644
Number of extensions: 36403706
Number of successful extensions: 3141897
Number of sequences better than 10.0: 128
Length of query: 534
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 511
Effective length of database: 93,106,754,628
Effective search space: 47577551614908
Effective search space used: 47577551614908
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 6.21
Homology vs Protein 
Query= Contig-U06460-1 (Contig-U06460-1Q) /CSM_Contig/Contig-U06460-1Q.Seq.d
         (534 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF085905_1(EF085905|pid:none) Picea sitchensis clone WS0295_I06 ...   144   2e-33
FB781816_1(FB781816|pid:none) Sequence 1089 from Patent WO200803...   140   2e-32
FB781802_1(FB781802|pid:none) Sequence 1075 from Patent WO200803...   140   2e-32
AC136288_5(AC136288|pid:none) Medicago truncatula clone mth2-13o...   140   2e-32
(O04019) RecName: Full=26S protease regulatory subunit 6A homolo...   140   3e-32
BT052739_1(BT052739|pid:none) Medicago truncatula clone MTYFH_FI...   140   3e-32
(P54776) RecName: Full=26S protease regulatory subunit 6A homolo...   140   3e-32
AF412095_1(AF412095|pid:none) Arabidopsis thaliana At1g09100/F7G...   140   3e-32
AP002854_15(AP002854|pid:none) Oryza sativa Japonica Group genom...   139   6e-32
BT043367_1(BT043367|pid:none) Zea mays full-length cDNA clone ZM...   139   6e-32
BT034485_1(BT034485|pid:none) Zea mays full-length cDNA clone ZM...   139   6e-32
BT040193_1(BT040193|pid:none) Zea mays full-length cDNA clone ZM...   138   1e-31
D17788_1(D17788|pid:none) Oryza sativa Japonica Group mRNA for h...   137   2e-31
AC009606_1(AC009606|pid:none) Arabidopsis thaliana chromosome II...   135   6e-31
AJ720697_1(AJ720697|pid:none) Gallus gallus mRNA for hypothetica...   130   3e-29
U77918_1(U77918|pid:none) Rattus norvegicus spermatogenic cell/s...   129   4e-29
AL691439_2(AL691439|pid:none) Mouse DNA sequence from clone RP23...   129   5e-29
AK151370_1(AK151370|pid:none) Mus musculus bone marrow macrophag...   129   5e-29
AK167002_1(AK167002|pid:none) Mus musculus blastocyst blastocyst...   129   5e-29
AK167061_1(AK167061|pid:none) Mus musculus blastocyst blastocyst...   129   5e-29
AL691439_1(AL691439|pid:none) Mouse DNA sequence from clone RP23...   129   5e-29
AK222485_1(AK222485|pid:none) Homo sapiens mRNA for proteasome 2...   129   5e-29
BT046299_1(BT046299|pid:none) Salmo salar clone ssal-eve-543-152...   129   5e-29
AK150189_1(AK150189|pid:none) Mus musculus bone marrow macrophag...   129   5e-29
(P17980) RecName: Full=26S protease regulatory subunit 6A; AltNa...   129   5e-29
BC103063_1(BC103063|pid:none) Bos taurus proteasome (prosome, ma...   129   5e-29
(Q63569) RecName: Full=26S protease regulatory subunit 6A; AltNa...   129   5e-29
BC107804_1(BC107804|pid:none) Homo sapiens proteasome (prosome, ...   129   5e-29
BT025458_1(BT025458|pid:none) Bos taurus proteasome (prosome, ma...   129   5e-29
AB171711_1(AB171711|pid:none) Macaca fascicularis brain cDNA clo...   129   5e-29
BT077485_1(BT077485|pid:none) Lepeophtheirus salmonis clone lsal...   129   6e-29
AF067618_3(AF067618|pid:none) Caenorhabditis elegans cosmid F56H...   128   8e-29
BX908808_47(BX908808|pid:none) Neurospora crassa DNA linkage gro...   128   1e-28
AY231693_1(AY231693|pid:none) Drosophila yakuba clone yak-em_Tbp...   128   1e-28
CU638744_559(CU638744|pid:none) Podospora anserina genomic DNA c...   127   1e-28
BC054164_1(BC054164|pid:none) Xenopus laevis proteasome (prosome...   127   1e-28
BC075596_1(BC075596|pid:none) Xenopus tropicalis proteasome (pro...   127   1e-28
AY750868_1(AY750868|pid:none) Toxoptera citricida putative 26S p...   125   7e-28
AM910991_280(AM910991|pid:none) Plasmodium knowlesi strain H chr...   124   1e-27
AK168263_1(AK168263|pid:none) Mus musculus TIB-55 BB88 cDNA, RIK...   123   3e-27
(O42586) RecName: Full=26S protease regulatory subunit 6A-B; Alt...   123   3e-27
BT080690_1(BT080690|pid:none) Caligus clemensi clone ccle-evs-50...   122   4e-27
CP000586_397(CP000586|pid:none) Ostreococcus lucimarinus CCE9901...   122   4e-27
AF134402_1(AF134402|pid:none) Drosophila melanogaster Tat-bindin...   122   4e-27
(P33297) RecName: Full=26S protease regulatory subunit 6A; AltNa...   120   2e-26
CP001575_145(CP001575|pid:none) Micromonas sp. RCC299 chromosome...   120   2e-26
AE014186_295(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...   120   2e-26
CR380947_109(CR380947|pid:none) Candida glabrata strain CBS138 c...   120   3e-26
CR382125_922(CR382125|pid:none) Kluyveromyces lactis strain NRRL...   119   6e-26
CR382130_373(CR382130|pid:none) Yarrowia lipolytica strain CLIB1...   117   2e-25
AE017353_152(AE017353|pid:none) Cryptococcus neoformans var. neo...   114   1e-24
CU928178_417(CU928178|pid:none) Zygosaccharomyces rouxii strain ...   114   2e-24
AP007154_387(AP007154|pid:none) Aspergillus oryzae RIB40 genomic...   113   3e-24
FN357393_55(FN357393|pid:none) Schistosoma mansoni genome sequen...   112   6e-24
FN357393_54(FN357393|pid:none) Schistosoma mansoni genome sequen...   112   6e-24
FN357393_56(FN357393|pid:none) Schistosoma mansoni genome sequen...   112   6e-24
FN314258_1(FN314258|pid:none) Schistosoma japonicum isolate Anhu...   110   2e-23
AM502240_60(AM502240|pid:none) Leishmania infantum chromosome 22.      99   7e-20
CT005261_60(CT005261|pid:none) Leishmania major strain Friedlin,...    99   7e-20
AM494959_57(AM494959|pid:none) Leishmania braziliensis chromosom...    96   6e-19
AF227503_1(AF227503|pid:none) Trypanosoma brucei proteasome regu...    96   7e-19
Z99296_12(Z99296|pid:none) S.pombe chromosome I cosmid c3H5.           89   7e-17
AL590449_141(AL590449|pid:none) chromosome X of strain GB-M1 of ...    84   2e-15
AL691439_3(AL691439|pid:none) Mouse DNA sequence from clone RP23...    83   5e-15
AJ010592_133(AJ010592|pid:none) Guillardia theta DNA for complet...    77   3e-13
BT061740_1(BT061740|pid:none) Zea mays full-length cDNA clone ZM...    77   4e-13
(Q58576) RecName: Full=Proteasome-activating nucleotidase; AltNa...    49   8e-05
(Q8TX03) RecName: Full=Proteasome-activating nucleotidase; AltNa...    47   2e-04
(Q9YAC7) RecName: Full=Proteasome-activating nucleotidase; AltNa...    46   5e-04
CP000575_899(CP000575|pid:none) Staphylothermus marinus F1, comp...    43   0.006
CR855073_5(CR855073|pid:none) Oryza sativa (indica cultivar-grou...    41   0.016
AK071386_1(AK071386|pid:none) Oryza sativa Japonica Group cDNA c...    41   0.021
CP000477_446(CP000477|pid:none) Methanosaeta thermophila PT, com...    39   0.11
FN357538_19(FN357538|pid:none) Schistosoma mansoni genome sequen...    39   0.11
(O28303) RecName: Full=Proteasome-activating nucleotidase; AltNa...    39   0.11
CP000102_1167(CP000102|pid:none) Methanosphaera stadtmanae DSM 3...    38   0.18
AY229998_1(AY229998|pid:none) Sulfolobus acidocaldarius strain D...    37   0.24
CP000493_1096(CP000493|pid:none) Hyperthermus butylicus DSM 5456...    37   0.24
CP000743_1018(CP000743|pid:none) Methanococcus aeolicus Nankai-3...    37   0.31
AY809918_1(AY809918|pid:none) Schistosoma japonicum SJCHGC05874 ...    37   0.31
FM992690_496(FM992690|pid:none) Candida dubliniensis CD36 chromo...    37   0.31
(Q8SQI9) RecName: Full=26S protease regulatory subunit 6B homolo...    37   0.40
(P46502) RecName: Full=Probable 26S protease regulatory subunit ...    37   0.40
(P54778) RecName: Full=26S protease regulatory subunit 6B homolo...    37   0.40
AE017196_578(AE017196|pid:none) Wolbachia endosymbiont of Drosop...    36   0.53
AE014298_1620(AE014298|pid:none) Drosophila melanogaster chromos...    36   0.53
BT078140_1(BT078140|pid:none) Lepeophtheirus salmonis clone lsal...    36   0.53
BC060362_1(BC060362|pid:none) Xenopus laevis proteasome 26S ATPa...    36   0.69
BC080888_1(BC080888|pid:none) Xenopus tropicalis proteasome (pro...    36   0.69
AK150989_1(AK150989|pid:none) Mus musculus bone marrow macrophag...    36   0.69
AF020736_1(AF020736|pid:none) Homo sapiens ATPase homolog mRNA, ...    36   0.69
AK160644_1(AK160644|pid:none) Mus musculus 10, 11 days embryo wh...    36   0.69
AY891401_1(AY891401|pid:none) Synthetic construct Homo sapiens c...    36   0.69
(P43686) RecName: Full=26S protease regulatory subunit 6B; AltNa...    36   0.69
(Q63570) RecName: Full=26S protease regulatory subunit 6B; AltNa...    36   0.69
BT075424_1(BT075424|pid:none) Osmerus mordax clone omor-eva-511-...    36   0.69
AK050677_1(AK050677|pid:none) Mus musculus 9 days embryo whole b...    36   0.69
AP007155_599(AP007155|pid:none) Aspergillus oryzae RIB40 genomic...    35   0.90
(Q975U2) RecName: Full=Proteasome-activating nucleotidase; AltNa...    35   0.90
AL954724_8(AL954724|pid:none) Zebrafish DNA sequence from clone ...    35   1.2
BC055215_1(BC055215|pid:none) Danio rerio proteasome (prosome, m...    35   1.2
BT016035_1(BT016035|pid:none) Drosophila melanogaster RE01104 fu...    35   1.2
AM502230_19(AM502230|pid:none) Leishmania infantum chromosome 12.      35   1.2
AE014297_1051(AE014297|pid:none) Drosophila melanogaster chromos...    35   1.2
CR382130_485(CR382130|pid:none) Yarrowia lipolytica strain CLIB1...    35   1.2
DQ443126_1(DQ443126|pid:none) Bombyx mori 26S protease regulator...    35   1.2
CP000920_1841(CP000920|pid:none) Streptococcus pneumoniae P1031,...    35   1.5
CP001129_388(CP001129|pid:none) Streptococcus equi subsp. zooepi...    35   1.5
(P54775) RecName: Full=26S protease regulatory subunit 6B; AltNa...    35   1.5
BX908789_22(BX908789|pid:none) Neurospora crassa DNA linkage gro...    35   1.5
(P46507) RecName: Full=26S protease regulatory subunit 6B; AltNa...    35   1.5
CT005251_22(CT005251|pid:none) Leishmania major strain Friedlin,...    34   2.0
CP001145_137(CP001145|pid:none) Coprothermobacter proteolyticus ...    34   2.0
AB297457_1(AB297457|pid:none) Molgula tectiformis myomegalin mRN...    34   2.0
CP000095_1608(CP000095|pid:none) Prochlorococcus marinus str. NA...    34   2.0
CR380957_405(CR380957|pid:none) Candida glabrata strain CBS138 c...    34   2.0
EF103413_1(EF103413|pid:none) Haliotis discus discus 26S proteas...    34   2.0
AM910987_82(AM910987|pid:none) Plasmodium knowlesi strain H chro...    34   2.0
(P85001) RecName: Full=Centrosomal protein of 290 kDa;          ...    34   2.6
CP001326_453(CP001326|pid:none) Micromonas sp. RCC299 chromosome...    34   2.6
BC142388_1(BC142388|pid:none) Bos taurus alveolar soft part sarc...    34   2.6
(Q8TF30) RecName: Full=WASP homolog-associated protein with acti...    33   3.4
CP001612_897(CP001612|pid:none) Rickettsia africae ESF-5, comple...    33   3.4
AE014297_1050(AE014297|pid:none) Drosophila melanogaster chromos...    33   3.4
AB075851_1(AB075851|pid:none) Homo sapiens mRNA for KIAA1971 pro...    33   3.4
(Q9BZE9) RecName: Full=Tether containing UBX domain for GLUT4; A...    33   4.5
AK290624_1(AK290624|pid:none) Homo sapiens cDNA FLJ76117 complet...    33   4.5
CP001186_5238(CP001186|pid:none) Bacillus cereus G9842, complete...    33   4.5
AK057851_1(AK057851|pid:none) Homo sapiens cDNA FLJ25122 fis, cl...    33   4.5
FM204883_447(FM204883|pid:none) Streptococcus equi subsp. equi 4...    33   4.5
CP000851_1808(CP000851|pid:none) Shewanella pealeana ATCC 700345...    33   4.5
CP001229_945(CP001229|pid:none) Sulfurihydrogenibium azorense Az...    33   4.5
CP000916_76(CP000916|pid:none) Thermotoga neapolitana DSM 4359, ...    33   4.5
AK057403_1(AK057403|pid:none) Homo sapiens cDNA FLJ32841 fis, cl...    33   4.5
AL663030_25(AL663030|pid:none) Mouse DNA sequence from clone RP2...    33   5.8
AK004509_1(AK004509|pid:none) Mus musculus 18-day embryo whole b...    33   5.8
(Q8E299) RecName: Full=Protein grpE; AltName: Full=HSP-70 cofact...    33   5.8
(Q8VBT9) RecName: Full=Tether containing UBX domain for GLUT4; A...    33   5.8
BC162026_1(BC162026|pid:none) Rattus norvegicus alveolar soft pa...    33   5.8
CP000589_61(CP000589|pid:none) Ostreococcus lucimarinus CCE9901 ...    33   5.8
CP000235_961(CP000235|pid:none) Anaplasma phagocytophilum HZ, co...    32   7.6
CP001140_1265(CP001140|pid:none) Desulfurococcus kamchatkensis 1...    32   7.6
CP001146_777(CP001146|pid:none) Dictyoglomus thermophilum H-6-12...    32   7.6
AK147313_1(AK147313|pid:none) Mus musculus cDNA, RIKEN full-leng...    32   7.6
BC150809_1(BC150809|pid:none) Mus musculus laminin B1 subunit 1,...    32   7.6
M15525_1(M15525|pid:none) Mouse laminin B1 mRNA, complete cds.         32   7.6
(P02469) RecName: Full=Laminin subunit beta-1;          Short=La...    32   7.6
AK141833_1(AK141833|pid:none) Mus musculus 12 days embryo spinal...    32   7.6
BC032276_1(BC032276|pid:none) Mus musculus laminin B1 subunit 1,...    32   7.6
AC104496_3(AC104496|pid:none) Trypanosoma cruzi strain CL Brener...    32   7.6
CP000589_215(CP000589|pid:none) Ostreococcus lucimarinus CCE9901...    32   7.6
AX045111_1(AX045111|pid:none) Sequence 19 from Patent WO0066730....    32   7.6
(Q4FP29) RecName: Full=Succinyl-CoA ligase [ADP-forming] subunit...    32   10.0
EF147477_1(EF147477|pid:none) Populus trichocarpa clone WS01231_...    32   10.0
CR548612_104(CR548612|pid:none) Paramecium tetraurelia macronucl...    32   10.0
EF148658_1(EF148658|pid:none) Populus trichocarpa x Populus delt...    32   10.0
CP001229_1223(CP001229|pid:none) Sulfurihydrogenibium azorense A...    32   10.0
AK071476_1(AK071476|pid:none) Oryza sativa Japonica Group cDNA c...    32   10.0

>EF085905_1(EF085905|pid:none) Picea sitchensis clone WS0295_I06
           unknown mRNA.
          Length = 424

 Score =  144 bits (362), Expect = 2e-33
 Identities = 72/139 (51%), Positives = 100/139 (71%), Gaps = 12/139 (8%)
 Frame = +2

Query: 44  DEIFQMTADEVNRKAKLLENETKVLRSEHISKHLEMDSIQKRIKENNDKLQVNTQLPHLV 223
           DE+  MT +E+ R A++LE+E +VLR E    +LE+D+ +++IKEN +K+++N QLP+LV
Sbjct: 15  DELSSMTTEELTRGARMLESENRVLRDEAQRTNLELDTTKEKIKENQEKIKLNKQLPYLV 74

Query: 224 ANVVEIIDMVLDGETQPS------------KCVVVKASTRQTIFLAYPGIVDVDKLRPGD 367
            N+VEI++M  + E +              KCVV+K STRQTIFL   G+VD DKL+PGD
Sbjct: 75  GNIVEILEMNPEEEAEEDGANVDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGD 134

Query: 368 LVGINKDSYIILDTLPPEY 424
           LVG+NKDSY+ILDTLP EY
Sbjct: 135 LVGVNKDSYLILDTLPSEY 153

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 606,065,785
Number of extensions: 9399334
Number of successful extensions: 23874
Number of sequences better than 10.0: 158
Number of HSP's gapped: 23787
Number of HSP's successfully gapped: 160
Length of query: 178
Length of database: 1,040,966,779
Length adjustment: 120
Effective length of query: 58
Effective length of database: 656,452,579
Effective search space: 38074249582
Effective search space used: 38074249582
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.75  gvh: 0.18  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U06460-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0