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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U06449-1
Contig ID Contig-U06449-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U06449-1 (Contig-U06449-1Q) /CSM_Contig/Contig-U06449-1Q.Seq.d
ACAATATCATATAAAATGGACTCCAAGAACGTTGAACTTTACACCCCACG
TAAGTGCTCTGCCACCAACCGTTTAATCACCGCCAAGGATCACGCTTCCG
TCCAAATTAACATTGGTCACGTCAATGCTGAAGGTATCTACAATGGTGAA
CAAACCATCTTTGCTTTCTGCGGTTTCCCCCGTAACAATGGTCAATCCGA
TGCTGCTCTCAACAGATTAGCCCAACAAAAAGGTTTTCTTAAAATCATTC
CTAAATTGACTCATTTTTAGGTATTTTATAAAATAAAAAAAGCTTTTTNA
AGNNNTAAATCTNNNGAGGGCCTGCGGAATTCCTCCNNAACNGGGGGNNC
NCCCCCGCNGGGGNCAACANATTANCCCANCANNNAGGNTTATTANCCCC
CCCCTAANNGGNCTNTTTTTTNAAAAAATTTTATAAAATAAAAAAAGCTT
TTTA
Gap no gap
Contig length 454
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 3001493
End point 3001184
Strand (PLUS/MINUS) MINUS
Number of clones 30
Number of EST 48
Link to clone list U06449
List of clone(s) 

est1=VSC515E,1,336
est2=VSJ513Z,1,187
est3=VSD593Z,2,291
est4=VSK496Z,2,292
est5=VSD431F,3,456
est6=VSF842Z,8,316
est7=VSK496F,9,309
est8=VSH268F,10,309
est9=VSH268Z,10,294
est10=VSI702F,10,309
est11=VSI702Z,10,291
est12=VSK316F,10,309
est13=VSK316Z,10,259
est14=VSC377E,13,359
est15=VSF747F,13,324
est16=VSH266F,13,309
est17=VSH266Z,13,294
est18=VSJ632F,16,309
est19=VSJ632Z,16,292
est20=VSD822F,18,328
est21=VSF842F,19,338
est22=VSD561F,21,309
est23=VSD561Z,21,294
est24=VSF128F,21,309
est25=VSF128Z,21,292
est26=VSJ740F,21,309
est27=VSJ740Z,21,294
est28=VSE153Z,23,324
est29=VSH862F,23,309
est30=VSD785Z,24,294
est31=VSE673E,24,348
est32=VSG632F,24,309
est33=VSH221F,24,309
est34=VSH221Z,24,295
est35=VSH669F,24,309
est36=VSH669Z,24,292
est37=VSJ513F,24,338
est38=VSF285F,25,309
est39=VSF285Z,25,158
est40=VSK329Z,25,267
est41=VSE468E,27,339
est42=VSG490F,27,309
est43=VSG490Z,27,261
est44=VSK123F,78,309
est45=VSK123Z,78,278
est46=VSK329F,92,309
est47=VSE655Z,183,327
est48=VSD822Z,202,316
Translated Amino Acid sequence 
TISYKMDSKNVELYTPRKCSATNRLITAKDHASVQINIGHVNAEGIYNGEQTIFAFCGFP
RNNGQSDAALNRLAQQKGFLKIIPKLTHF*vfykikkafxxxksxeglrnssxtggxppx
gxtxxpxxxxyxpppxxxxfxknfik*kklf
Translated Amino Acid sequence (All Frames) 
Frame A:
TISYKMDSKNVELYTPRKCSATNRLITAKDHASVQINIGHVNAEGIYNGEQTIFAFCGFP
RNNGQSDAALNRLAQQKGFLKIIPKLTHF*vfykikkafxxxksxeglrnssxtggxppx
gxtxxpxxxxyxpppxxxxfxknfik*kklf


Frame B:
qyhikwtprtlnftphvsalpptv*sppritlpskltlvtsmlkvstmvnkpsllsavsp
vtmvnpmllstd*pnkkvflksfln*lifryfik*kklfxxxnlxracgippxxgxxprx
gqxixpxxrxixpplxglffxkil*nkksfl


Frame C:
nii*nglqer*tlhpt*vlchqpfnhrqgsrfrpn*hwsrqc*rylqw*tnhlcflrfpp
*qwsirccsqqisptkrfs*nhs*idsflgil*nkksfxkx*ixxgpaeflxnxgxxpag
xnxlxxxxgllxpp*xxxfxkkfykikkaf
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06449-1 (Contig-U06449-1Q)
/CSM_Contig/Contig-U06449-1Q.Seq.d
         (454 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06449-1 (Contig-U06449-1Q) /CSM_Contig/Conti...   583  e-167
Contig-U13390-1 (Contig-U13390-1Q) /CSM_Contig/Conti...    32  0.49
Contig-U13299-1 (Contig-U13299-1Q) /CSM_Contig/Conti...    32  0.49
Contig-U13024-1 (Contig-U13024-1Q) /CSM_Contig/Conti...    32  0.49
Contig-U11160-1 (Contig-U11160-1Q) /CSM_Contig/Conti...    30  1.9
Contig-U09061-1 (Contig-U09061-1Q) /CSM_Contig/Conti...    30  1.9
Contig-U14767-1 (Contig-U14767-1Q) /CSM_Contig/Conti...    28  7.7
Contig-U14278-1 (Contig-U14278-1Q) /CSM_Contig/Conti...    28  7.7
Contig-U13537-1 (Contig-U13537-1Q) /CSM_Contig/Conti...    28  7.7
Contig-U13438-1 (Contig-U13438-1Q) /CSM_Contig/Conti...    28  7.7

>Contig-U06449-1 (Contig-U06449-1Q) /CSM_Contig/Contig-U06449-1Q.Seq.d
          Length = 454

 Score =  583 bits (294), Expect = e-167
 Identities = 329/336 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaatatcatataaaatggactccaagaacgttgaactttacaccccacgtaagtgctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   acaatatcatataaaatggactccaagaacgttgaactttacaccccacgtaagtgctct 60

                                                                       
Query: 61  gccaccaaccgtttaatcaccgccaaggatcacgcttccgtccaaattaacattggtcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gccaccaaccgtttaatcaccgccaaggatcacgcttccgtccaaattaacattggtcac 120

                                                                       
Query: 121 gtcaatgctgaaggtatctacaatggtgaacaaaccatctttgctttctgcggtttcccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcaatgctgaaggtatctacaatggtgaacaaaccatctttgctttctgcggtttcccc 180

                                                                       
Query: 181 cgtaacaatggtcaatccgatgctgctctcaacagattagcccaacaaaaaggttttctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cgtaacaatggtcaatccgatgctgctctcaacagattagcccaacaaaaaggttttctt 240

                                                                       
Query: 241 aaaatcattcctaaattgactcatttttaggtattttataaaatnnnnnnngctttttna 300
           ||||||||||||||||||||||||||||||||||||||||||||       |||||||||
Sbjct: 241 aaaatcattcctaaattgactcatttttaggtattttataaaataaaaaaagctttttna 300

                                               
Query: 301 agnnntaaatctnnngagggcctgcggaattcctcc 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 301 agnnntaaatctnnngagggcctgcggaattcctcc 336


>Contig-U13390-1 (Contig-U13390-1Q) /CSM_Contig/Contig-U13390-1Q.Seq.d
          Length = 835

 Score = 32.2 bits (16), Expect = 0.49
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 1   acaatatcatataaaa 16
           ||||||||||||||||
Sbjct: 350 acaatatcatataaaa 365


>Contig-U13299-1 (Contig-U13299-1Q) /CSM_Contig/Contig-U13299-1Q.Seq.d
          Length = 825

 Score = 32.2 bits (16), Expect = 0.49
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 182 gtaacaatggtcaatc 197
           ||||||||||||||||
Sbjct: 209 gtaacaatggtcaatc 224


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1762
Number of Sequences: 6905
Number of extensions: 1762
Number of successful extensions: 119
Number of sequences better than 10.0: 29
length of query: 454
length of database: 5,674,871
effective HSP length: 16
effective length of query: 438
effective length of database: 5,564,391
effective search space: 2437203258
effective search space used: 2437203258
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11. 8
Homology vs DNA 
Query= Contig-U06449-1 (Contig-U06449-1Q) /CSM_Contig/Contig-U06449-1Q.Seq.d
         (454 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU262615) Dictyostelium discoideum vegetative cDNA clone:VS...   468   e-143  3
(AU264020) Dictyostelium discoideum vegetative cDNA clone:VS...   428   e-140  4
(AU271295) Dictyostelium discoideum vegetative cDNA clone:VS...   436   e-133  3
(AU270987) Dictyostelium discoideum vegetative cDNA clone:VS...   434   e-133  3
(AU269102) Dictyostelium discoideum vegetative cDNA clone:VS...   434   e-133  3
(AU267168) Dictyostelium discoideum vegetative cDNA clone:VS...   434   e-133  3
(AU264280) Dictyostelium discoideum vegetative cDNA clone:VS...   450   e-133  3
(AU267164) Dictyostelium discoideum vegetative cDNA clone:VS...   428   e-131  3
(AU270988) Dictyostelium discoideum vegetative cDNA clone:VS...   474   e-129  1
(AU270226) Dictyostelium discoideum vegetative cDNA clone:VS...   422   e-129  3
(AU271296) Dictyostelium discoideum vegetative cDNA clone:VS...   450   e-129  3
(AU262522) Dictyostelium discoideum vegetative cDNA clone:VS...   420   e-127  3
(AU270398) Dictyostelium discoideum vegetative cDNA clone:VS...   412   e-126  3
(AU264244) Dictyostelium discoideum vegetative cDNA clone:VS...   412   e-126  3
(AU267165) Dictyostelium discoideum vegetative cDNA clone:VS...   428   e-126  3
(AU265724) Dictyostelium discoideum vegetative cDNA clone:VS...   398   e-125  4
(AU268088) Dictyostelium discoideum vegetative cDNA clone:VS...   408   e-125  3
(AU263287) Dictyostelium discoideum vegetative cDNA clone:VS...   406   e-124  3
(AU270033) Dictyostelium discoideum vegetative cDNA clone:VS...   406   e-124  3
(AU264607) Dictyostelium discoideum vegetative cDNA clone:VS...   398   e-124  3
(AU267092) Dictyostelium discoideum vegetative cDNA clone:VS...   406   e-124  3
(AU264993) Dictyostelium discoideum vegetative cDNA clone:VS...   404   e-124  3
(AU262908) Dictyostelium discoideum vegetative cDNA clone:VS...   412   e-123  3
(AU269103) Dictyostelium discoideum vegetative cDNA clone:VS...   428   e-123  3
(AU263130) Dictyostelium discoideum vegetative cDNA clone:VS...   400   e-123  3
(AU266566) Dictyostelium discoideum vegetative cDNA clone:VS...   400   e-123  3
(AU264752) Dictyostelium discoideum vegetative cDNA clone:VS...   412   e-123  3
(AU265877) Dictyostelium discoideum vegetative cDNA clone:VS...   398   e-122  3
(AU264751) Dictyostelium discoideum vegetative cDNA clone:VS...   398   e-122  3
(AU267798) Dictyostelium discoideum vegetative cDNA clone:VS...   398   e-122  3
(AU266677) Dictyostelium discoideum vegetative cDNA clone:VS...   398   e-122  3
(AU271012) Dictyostelium discoideum vegetative cDNA clone:VS...   404   e-122  2
(AU270399) Dictyostelium discoideum vegetative cDNA clone:VS...   412   e-121  3
(AU264245) Dictyostelium discoideum vegetative cDNA clone:VS...   412   e-121  3
(AU267169) Dictyostelium discoideum vegetative cDNA clone:VS...   428   e-121  4
(AU267093) Dictyostelium discoideum vegetative cDNA clone:VS...   406   e-120  3
(AU264566) Dictyostelium discoideum vegetative cDNA clone:VS...   406   e-120  3
(AU270227) Dictyostelium discoideum vegetative cDNA clone:VS...   422   e-117  3
(AU266567) Dictyostelium discoideum vegetative cDNA clone:VS...   394   e-113  2
(AU267799) Dictyostelium discoideum vegetative cDNA clone:VS...   406   e-113  3
(AU265878) Dictyostelium discoideum vegetative cDNA clone:VS...   345   2e-96  2
(AU270684) Dictyostelium discoideum vegetative cDNA clone:VS...   307   5e-95  3
(AU270685) Dictyostelium discoideum vegetative cDNA clone:VS...   307   7e-91  3
(AU271011) Dictyostelium discoideum vegetative cDNA clone:VS...   274   6e-85  3
(AU270034) Dictyostelium discoideum vegetative cDNA clone:VS...   258   2e-64  1
(AU264994) Dictyostelium discoideum vegetative cDNA clone:VS...   258   2e-64  1
(EC761251) PSE00004475 rw_mgpallid Polysphondylium pallidum ...   119   7e-32  2
(EC760395) PSE00004800 rw_mgpallid Polysphondylium pallidum ...   119   7e-32  2
(EC762500) PSE00002701 rw_mgpallid Polysphondylium pallidum ...   119   7e-32  2
(AU263272) Dictyostelium discoideum vegetative cDNA clone:VS...   109   8e-32  2
(EC760394) PSE00008231 rw_mgpallid Polysphondylium pallidum ...    90   5e-23  2
(AU264608) Dictyostelium discoideum vegetative cDNA clone:VS...    64   1e-17  2
(EC745844) PSE00002045 rw_mgpallid Polysphondylium pallidum ...    70   4e-17  2
(EC854205) HDE00003926 Hyperamoeba dachnaya Non-normalized (...    92   2e-14  1
(EC854147) HDE00000241 Hyperamoeba dachnaya Non-normalized (...    92   2e-14  1
(EC853190) HDE00003945 Hyperamoeba dachnaya Non-normalized (...    92   2e-14  1
(EE008537) ROE00003627 Rhizopus oryzae Company Rhizopus oryz...    80   8e-11  1
(EE007724) ROE00002015 Rhizopus oryzae Company Rhizopus oryz...    80   8e-11  1
(EE003980) ROE00002061 Rhizopus oryzae Company Rhizopus oryz...    80   8e-11  1
(EE000141) ROE00009405 Rhizopus oryzae Company Rhizopus oryz...    80   8e-11  1
(EC998181) ROE00009309 Rhizopus oryzae Company Rhizopus oryz...    80   8e-11  1
(AU268089) Dictyostelium discoideum vegetative cDNA clone:VS...    76   1e-09  1
(AC175199) Sporobolomyces roseus clone JGIBAIF-25B13, comple...    64   5e-06  1
(EC811235) SCE00003920 Advantage polymerase (lib1_sc_adv) Sa...    64   5e-06  1
(EC811076) SCE00001016 Advantage polymerase (lib1_sc_adv) Sa...    64   5e-06  1
(EC810813) SCE00002852 Advantage polymerase (lib1_sc_adv) Sa...    64   5e-06  1
(EC810798) SCE00001889 Advantage polymerase (lib1_sc_adv) Sa...    64   5e-06  1
(EC810668) SCE00003078 Advantage polymerase (lib1_sc_adv) Sa...    64   5e-06  1
(EC809770) SCE00001466 Advantage polymerase (lib1_sc_adv) Sa...    64   5e-06  1
(EC809492) SCE00003376 Advantage polymerase (lib1_sc_adv) Sa...    64   5e-06  1
(EC809462) SCE00001877 Advantage polymerase (lib1_sc_adv) Sa...    64   5e-06  1
(EC809374) SCE00002127 Advantage polymerase (lib1_sc_adv) Sa...    64   5e-06  1
(EC809269) SCE00002195 Advantage polymerase (lib1_sc_adv) Sa...    64   5e-06  1
(EC809233) SCE00002868 Advantage polymerase (lib1_sc_adv) Sa...    64   5e-06  1
(EC809217) SCE00000935 Advantage polymerase (lib1_sc_adv) Sa...    64   5e-06  1
(EC809138) SCE00000101 Advantage polymerase (lib1_sc_adv) Sa...    64   5e-06  1
(EC809105) SCE00003852 Advantage polymerase (lib1_sc_adv) Sa...    64   5e-06  1
(EC808895) SCE00000485 Advantage polymerase (lib1_sc_adv) Sa...    64   5e-06  1
(EC808759) SCE00001845 Advantage polymerase (lib1_sc_adv) Sa...    64   5e-06  1
(FC004129) CATH9665.fwd CATH Sporobolomyces roseus IAM 13481...    64   5e-06  1
(FC004128) CATH9665.rev CATH Sporobolomyces roseus IAM 13481...    64   5e-06  1
(FC003977) CATH9593.fwd CATH Sporobolomyces roseus IAM 13481...    64   5e-06  1
(FC002522) CATH8881.fwd CATH Sporobolomyces roseus IAM 13481...    64   5e-06  1
(FC002521) CATH8881.rev CATH Sporobolomyces roseus IAM 13481...    64   5e-06  1
(FC001960) CATH8252.fwd CATH Sporobolomyces roseus IAM 13481...    64   5e-06  1
(FC001944) CATH8245.fwd CATH Sporobolomyces roseus IAM 13481...    64   5e-06  1
(FC001264) CATH7899.fwd CATH Sporobolomyces roseus IAM 13481...    64   5e-06  1
(FC001263) CATH7899.rev CATH Sporobolomyces roseus IAM 13481...    64   5e-06  1
(FC000999) CATH7772.fwd CATH Sporobolomyces roseus IAM 13481...    64   5e-06  1
(FC000809) CATH7294.fwd CATH Sporobolomyces roseus IAM 13481...    64   5e-06  1
(FC000808) CATH7294.rev CATH Sporobolomyces roseus IAM 13481...    64   5e-06  1
(FC000623) CATH7192.fwd CATH Sporobolomyces roseus IAM 13481...    64   5e-06  1
(FC000622) CATH7192.rev CATH Sporobolomyces roseus IAM 13481...    64   5e-06  1
(FC000414) CATH7081.fwd CATH Sporobolomyces roseus IAM 13481...    64   5e-06  1
(FC000048) CATH6883.fwd CATH Sporobolomyces roseus IAM 13481...    64   5e-06  1
(FC000047) CATH6883.rev CATH Sporobolomyces roseus IAM 13481...    64   5e-06  1
(EY997969) CATH5763.fwd CATH Sporobolomyces roseus IAM 13481...    64   5e-06  1
(EY997958) CATH5757.fwd CATH Sporobolomyces roseus IAM 13481...    64   5e-06  1
(EY997957) CATH5757.rev CATH Sporobolomyces roseus IAM 13481...    64   5e-06  1
(EY997637) CATH5579.fwd CATH Sporobolomyces roseus IAM 13481...    64   5e-06  1

>(AU262615) Dictyostelium discoideum vegetative cDNA clone:VSC515,
           3' end single read.
          Length = 333

 Score =  468 bits (236), Expect(3) = e-143
 Identities = 236/236 (100%)
 Strand = Plus / Plus


Query: 1   acaatatcatataaaatggactccaagaacgttgaactttacaccccacgtaagtgctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   acaatatcatataaaatggactccaagaacgttgaactttacaccccacgtaagtgctct 60


Query: 61  gccaccaaccgtttaatcaccgccaaggatcacgcttccgtccaaattaacattggtcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gccaccaaccgtttaatcaccgccaaggatcacgcttccgtccaaattaacattggtcac 120


Query: 121 gtcaatgctgaaggtatctacaatggtgaacaaaccatctttgctttctgcggtttcccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcaatgctgaaggtatctacaatggtgaacaaaccatctttgctttctgcggtttcccc 180


Query: 181 cgtaacaatggtcaatccgatgctgctctcaacagattagcccaacaaaaaggttt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cgtaacaatggtcaatccgatgctgctctcaacagattagcccaacaaaaaggttt 236

 Score = 60.0 bits (30), Expect(3) = e-143
 Identities = 33/34 (97%)
 Strand = Plus / Plus


Query: 251 ctaaattgactcatttttaggtattttataaaat 284
           |||||||||||||||||||| |||||||||||||
Sbjct: 249 ctaaattgactcatttttagatattttataaaat 282

 Score = 32.2 bits (16), Expect(3) = e-143
 Identities = 16/16 (100%)
 Strand = Plus / Plus


Query: 235 tttcttaaaatcattc 250
           ||||||||||||||||
Sbjct: 234 tttcttaaaatcattc 249

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 298,070,685
Number of extensions: 16170066
Number of successful extensions: 1189218
Number of sequences better than 10.0: 980
Length of query: 454
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 431
Effective length of database: 93,106,754,628
Effective search space: 40129011244668
Effective search space used: 40129011244668
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 6.21
Homology vs Protein 
Query= Contig-U06449-1 (Contig-U06449-1Q) /CSM_Contig/Contig-U06449-1Q.Seq.d
         (454 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54BN4) RecName: Full=40S ribosomal protein S21;                     154   1e-36
GM961446_1(GM961446|pid:none) Sequence 8400 from Patent WO200814...    99   4e-20
GM961448_1(GM961448|pid:none) Sequence 8402 from Patent WO200814...    99   5e-20
GM961348_1(GM961348|pid:none) Sequence 8302 from Patent WO200814...    99   5e-20
BT062080_1(BT062080|pid:none) Zea mays full-length cDNA clone ZM...    99   5e-20
FB334991_1(FB334991|pid:none) Sequence 2517 from Patent WO200711...    99   6e-20
(Q9SMI2) RecName: Full=40S ribosomal protein S21;  &AJ011718_1(A...    99   6e-20
EF145835_1(EF145835|pid:none) Populus trichocarpa clone WS0113_L...    99   6e-20
GM961372_1(GM961372|pid:none) Sequence 8326 from Patent WO200814...    98   8e-20
GM961454_1(GM961454|pid:none) Sequence 8408 from Patent WO200814...    98   8e-20
AM471391_2(AM471391|pid:none) Vitis vinifera contig VV78X082935....    98   1e-19
GM961342_1(GM961342|pid:none) Sequence 8296 from Patent WO200814...    98   1e-19
EF145799_1(EF145799|pid:none) Populus trichocarpa clone WS0113_H...    97   1e-19
BT035131_1(BT035131|pid:none) Zea mays full-length cDNA clone ZM...    97   1e-19
EU954698_1(EU954698|pid:none) Zea mays clone 1477107 40S ribosom...    97   1e-19
EU952063_1(EU952063|pid:none) Zea mays clone 1154601 40S ribosom...    97   1e-19
GM961374_1(GM961374|pid:none) Sequence 8328 from Patent WO200814...    97   2e-19
GM961450_1(GM961450|pid:none) Sequence 8404 from Patent WO200814...    97   2e-19
GM961438_1(GM961438|pid:none) Sequence 8392 from Patent WO200814...    95   9e-19
(Q9M337) RecName: Full=40S ribosomal protein S21-1;  &AL132960_1...    95   9e-19
GM961434_1(GM961434|pid:none) Sequence 8388 from Patent WO200814...    95   9e-19
BT071101_1(BT071101|pid:none) Picea sitchensis clone WS02771_B20...    94   1e-18
(P35687) RecName: Full=40S ribosomal protein S21;  &AP008209_144...    94   1e-18
AY086689_1(AY086689|pid:none) Arabidopsis thaliana clone 26837 m...    92   4e-18
AM920433_533(AM920433|pid:none) Penicillium chrysogenum Wisconsi...    92   4e-18
AC133930_25(AC133930|pid:none) Oryza sativa chromosome 3 BAC OSJ...    92   4e-18
GM961366_1(GM961366|pid:none) Sequence 8320 from Patent WO200814...    92   7e-18
GM961338_1(GM961338|pid:none) Sequence 8292 from Patent WO200814...    92   7e-18
FN392321_609(FN392321|pid:none) Pichia pastoris GS115 chromosome...    92   7e-18
CP000595_139(CP000595|pid:none) Ostreococcus lucimarinus CCE9901...    91   1e-17
CR382136_654(CR382136|pid:none) Debaryomyces hansenii strain CBS...    91   2e-17
GM961462_1(GM961462|pid:none) Sequence 8416 from Patent WO200814...    90   2e-17
GM961344_1(GM961344|pid:none) Sequence 8298 from Patent WO200814...    90   2e-17
(Q4WI01) RecName: Full=40S ribosomal protein S21;  &GM961398_1(G...    89   5e-17
CP001333_149(CP001333|pid:none) Micromonas sp. RCC299 chromosome...    87   1e-16
DQ864829_1(DQ864829|pid:none) Pfiesteria piscicida clone ppi-5p-...    87   2e-16
GM961360_1(GM961360|pid:none) Sequence 8314 from Patent WO200814...    86   3e-16
AM910991_415(AM910991|pid:none) Plasmodium knowlesi strain H chr...    85   7e-16
(P05764) RecName: Full=40S ribosomal protein S21; AltName: Full=...    84   1e-15
(P0C0V8) RecName: Full=40S ribosomal protein S21-A; AltName: Ful...    84   1e-15
GM961340_1(GM961340|pid:none) Sequence 8294 from Patent WO200814...    84   1e-15
Z28283_1(Z28283|pid:none) S.cerevisiae chromosome XI reading fra...    84   1e-15
FM992688_125(FM992688|pid:none) Candida dubliniensis CD36 chromo...    84   1e-15
AY849646_1(AY849646|pid:none) Magnaporthe grisea 40S ribosomal p...    84   2e-15
CU928170_235(CU928170|pid:none) Kluyveromyces thermotolerans str...    84   2e-15
EF134358_1(EF134358|pid:none) Oxyrrhis marina isolate Om-5p-33 4...    83   3e-15
B23862(B23862)ribosomal protein S21.e - fission yeast (Schizosac...    82   6e-15
GM961336_1(GM961336|pid:none) Sequence 8290 from Patent WO200814...    81   1e-14
(Q75BL6) RecName: Full=40S ribosomal protein S21;  &AE016816_459...    81   1e-14
AM502229_77(AM502229|pid:none) Leishmania infantum chromosome 11.      79   5e-14
CR382130_566(CR382130|pid:none) Yarrowia lipolytica strain CLIB1...    77   2e-13
CR954216_181(CR954216|pid:none) Ostreococcus tauri strain OTTH05...    76   3e-13
AM494948_55(AM494948|pid:none) Leishmania braziliensis chromosom...    76   4e-13
EU574805_1(EU574805|pid:none) Ornithodoros coriaceus clone OC-13...    75   9e-13
EU139189_1(EU139189|pid:none) Flustra foliacea putative 40S ribo...    74   1e-12
BT046459_1(BT046459|pid:none) Salmo salar clone ssal-evf-509-208...    74   2e-12
(Q6AZJ9) RecName: Full=40S ribosomal protein S21;  &BC077773_1(B...    74   2e-12
BT050260_1(BT050260|pid:none) Salmo salar clone ssal-evd-558-057...    74   2e-12
(P63220) RecName: Full=40S ribosomal protein S21;  &(P63221) Rec...    73   3e-12
AY891496_1(AY891496|pid:none) Synthetic construct Homo sapiens c...    73   3e-12
AY888865_1(AY888865|pid:none) Synthetic construct Homo sapiens c...    73   3e-12
DQ214067_1(DQ214067|pid:none) Taeniopygia guttata clone 0061P000...    73   4e-12
(P05765) RecName: Full=40S ribosomal protein S21;  &BC058464_1(B...    73   4e-12
(Q7ZUG5) RecName: Full=40S ribosomal protein S21;  &BC049056_1(B...    72   5e-12
AK010610_1(AK010610|pid:none) Mus musculus ES cells cDNA, RIKEN ...    72   5e-12
(Q9CQR2) RecName: Full=40S ribosomal protein S21;  &AK007846_1(A...    72   5e-12
(Q90YQ2) RecName: Full=40S ribosomal protein S21;  &AF402830_1(A...    72   5e-12
AM849495_1(AM849495|pid:none) Pomphorhynchus laevis partial mRNA...    72   8e-12
BT082953_1(BT082953|pid:none) Anoplopoma fimbria clone afim-evh-...    72   8e-12
DQ214066_1(DQ214066|pid:none) Taeniopygia guttata clone 0058P001...    72   8e-12
(Q6RF66) RecName: Full=40S ribosomal protein S21;  &AY500992_1(A...    71   1e-11
(Q6DDC6) RecName: Full=40S ribosomal protein S21;  &BC077662_1(B...    71   1e-11
EU124945_1(EU124945|pid:none) Arenicola marina ribosomal protein...    71   1e-11
DQ214065_1(DQ214065|pid:none) Taeniopygia guttata clone 0058P001...    70   2e-11
GM961380_1(GM961380|pid:none) Sequence 8334 from Patent WO200814...    70   2e-11
(P49197) RecName: Full=40S ribosomal protein S21;  &GM961400_1(G...    70   3e-11
DQ440269_1(DQ440269|pid:none) Aedes aegypti clone AET-342 40S ri...    70   3e-11
AE014134_512(AE014134|pid:none) Drosophila melanogaster chromoso...    69   4e-11
AM048983_1(AM048983|pid:none) Sphaerius sp. APV-2005 mRNA for ri...    69   4e-11
EU954535_1(EU954535|pid:none) Zea mays clone 1469609 hypothetica...    69   5e-11
EF070549_1(EF070549|pid:none) Maconellicoccus hirsutus clone WHM...    69   7e-11
(Q8I7N7) RecName: Full=40S ribosomal protein S21;  &AJ507827_1(A...    69   7e-11
(Q612Q9) RecName: Full=40S ribosomal protein S21;                      69   7e-11
EF634918_1(EF634918|pid:none) Pristionchus aerivorus small subun...    68   9e-11
EF634924_1(EF634924|pid:none) Pristionchus sp. 11 RS5228 small s...    68   9e-11
EF634922_1(EF634922|pid:none) Pristionchus pseudaerivorus small ...    68   9e-11
EF634921_1(EF634921|pid:none) Pristionchus pauli small subunit r...    68   9e-11
EF634913_1(EF634913|pid:none) Pristionchus lheritieri small subu...    68   1e-10
EU116932_1(EU116932|pid:none) Barentsia elongata putative riboso...    65   6e-10
(Q4GXP3) RecName: Full=40S ribosomal protein S21;  &AM048980_1(A...    65   1e-09
(Q6F477) RecName: Full=40S ribosomal protein S21;  &AB180413_1(A...    64   2e-09
BT058641_1(BT058641|pid:none) Salmo salar clone Contig2807 40S r...    64   2e-09
(Q6PUF8) RecName: Full=40S ribosomal protein S21;  &(Q962Q8) Rec...    64   2e-09
(Q4GXP2) RecName: Full=40S ribosomal protein S21;  &AM048981_1(A...    64   2e-09
AL121832_2(AL121832|pid:none) Human DNA sequence from clone RP5-...    60   2e-08
(Q4KTC0) RecName: Full=40S ribosomal protein S21;  &AY857479_1(A...    58   9e-08
FN322143_1(FN322143|pid:none) Schistosoma japonicum isolate Anhu...    54   2e-06
AB007157_1(AB007157|pid:none) Homo sapiens gene for ribosomal pr...    51   1e-05
FN316002_1(FN316002|pid:none) Schistosoma japonicum isolate Anhu...    51   1e-05
S51027(S51027;S59004;S47097)differentiation factor, 8.2K, precur...    50   3e-05
X79563_1(X79563|pid:none) Homo sapiens mRNA for 8.2kDa different...    50   3e-05
T06823(T06823) ribosomal protein S21 - garden pea  &Y17134_1(Y17...    49   7e-05
AK296185_1(AK296185|pid:none) Homo sapiens cDNA FLJ59210 complet...    37   0.28
AB052729_1(AB052729|pid:none) Pisum sativum mRNA for DNA-binding...    32   5.3

>(Q54BN4) RecName: Full=40S ribosomal protein S21;
          Length = 78

 Score =  154 bits (388), Expect = 1e-36
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +1

Query: 16  MDSKNVELYTPRKCSATNRLITAKDHASVQINIGHVNAEGIYNGEQTIFAFCGFPRNNGQ 195
           MDSKNVELYTPRKCSATNRLITAKDHASVQINIGHVNAEGIYNGEQTIFAFCGF RNNGQ
Sbjct: 1   MDSKNVELYTPRKCSATNRLITAKDHASVQINIGHVNAEGIYNGEQTIFAFCGFLRNNGQ 60

Query: 196 SDAALNRLAQQKGFLK 243
           SDAALNRLAQQKGFLK
Sbjct: 61  SDAALNRLAQQKGFLK 76

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 692,908,505
Number of extensions: 13961705
Number of successful extensions: 24743
Number of sequences better than 10.0: 104
Number of HSP's gapped: 24654
Number of HSP's successfully gapped: 104
Length of query: 151
Length of database: 1,040,966,779
Length adjustment: 113
Effective length of query: 38
Effective length of database: 678,882,574
Effective search space: 25797537812
Effective search space used: 25797537812
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)
PSORT 

 psg: 0.55  gvh: 0.33  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for Contig-U06449-1 is cyt
VS (DIR, S) 30
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0