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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U06431-1
Contig ID Contig-U06431-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U06431-1 (Contig-U06431-1Q) /CSM_Contig/Contig-U06431-1Q.Seq.d
TTAAATCCAAAATTTGAAGAATTTTCATACTCTCAAAAAATACATGATTT
AATTTATTCTTTGGGAATTTATAATAAAGCATTAAGTGTTCAAAGTATGT
ATATTTTCAAGAATCAAAAGATTGGTGGTGAAGTTGATATTCATCAAGAT
AGTACATTCCTTCATACAACACCATTAACAACACATGCAATTTGGTTTGC
ATTTGAAGATTCAACAATNGAGAATGGATGTCTTCGTGGATTACCAGGAT
CACATACAGAGGGAATTACAAGAAGATTCATTACAGATCCAAATAGTGAA
AGTGGTTGTTCATTCATTAAATTAGCAGAAGATAAACAATATAATAAATC
TGATTTCGTTGCATTGGAATGTAAAAAAGGTGATATCATTCTATTGGATG
GCTCAGTTGTACATTATAGTGAACCAAATACATCACCAAATTCACGTCAT
GCTTATACACTTCATTTCATTGAAGGTGATAATGGTGTAATTTATGAAAA
TGATAATTGGTTACAATCAGCAAAACCATTTAGNGTATTATAAAAAAAAA
TAAATTATTTTTTTAAAATTTTATTTAATTTTAAAAAAAAAAAAAAAAAA
AAAAA
Gap no gap
Contig length 605
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 1405101
End point 1404519
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U06431
List of clone(s) 

est1=VSC243Z,1,606
Translated Amino Acid sequence 
LNPKFEEFSYSQKIHDLIYSLGIYNKALSVQSMYIFKNQKIGGEVDIHQDSTFLHTTPLT
THAIWFAFEDSTXENGCLRGLPGSHTEGITRRFITDPNSESGCSFIKLAEDKQYNKSDFV
ALECKKGDIILLDGSVVHYSEPNTSPNSRHAYTLHFIEGDNGVIYENDNWLQSAKPFXVL
*kkinyffkilfnfkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
LNPKFEEFSYSQKIHDLIYSLGIYNKALSVQSMYIFKNQKIGGEVDIHQDSTFLHTTPLT
THAIWFAFEDSTXENGCLRGLPGSHTEGITRRFITDPNSESGCSFIKLAEDKQYNKSDFV
ALECKKGDIILLDGSVVHYSEPNTSPNSRHAYTLHFIEGDNGVIYENDNWLQSAKPFXVL
*kkinyffkilfnfkkkkkkk


Frame B:
*iqnlknfhtlkkymi*filwefiikh*vfkvcifsrikrlvvklifikivhsfiqhh*q
hmqfglhlkiqqxrmdvfvdyqdhiqrelqedslqiqivkvvvhsln*qkinniinlisl
hwnvkkvisfywmaqlyiivnqihhqihvmlihfislkvimv*fmkmiigynqqnhlxyy
kkk*iiflkfylilkkkkkkk


Frame C:
kski*rifilsknt*fnlffgnl**sikcskyvyfqeskdww*s*yssr*yipsyntinn
tcnlvci*rfnnxewmsswitrityrgnykkihyrsk**kwlfih*isrr*ti**i*frc
igm*kr*yhsigwlsctl**tkyitkftsclytsfh*r**wcnl*k**lvtiskti*xii
kknklff*nfi*f*kkkkkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06431-1 (Contig-U06431-1Q)
/CSM_Contig/Contig-U06431-1Q.Seq.d
         (605 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06431-1 (Contig-U06431-1Q) /CSM_Contig/Conti...  1088  0.0
Contig-U12577-1 (Contig-U12577-1Q) /CSM_Contig/Conti...    64  2e-10
Contig-U12767-1 (Contig-U12767-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U13513-1 (Contig-U13513-1Q) /CSM_Contig/Conti...    42  7e-04
Contig-U11805-1 (Contig-U11805-1Q) /CSM_Contig/Conti...    42  7e-04
Contig-U12557-1 (Contig-U12557-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U10984-1 (Contig-U10984-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U08770-1 (Contig-U08770-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U05073-1 (Contig-U05073-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U01996-1 (Contig-U01996-1Q) /CSM_Contig/Conti...    40  0.003

>Contig-U06431-1 (Contig-U06431-1Q) /CSM_Contig/Contig-U06431-1Q.Seq.d
          Length = 605

 Score = 1088 bits (549), Expect = 0.0
 Identities = 573/582 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaaatccaaaatttgaagaattttcatactctcaaaaaatacatgatttaatttattct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ttaaatccaaaatttgaagaattttcatactctcaaaaaatacatgatttaatttattct 60

                                                                       
Query: 61  ttgggaatttataataaagcattaagtgttcaaagtatgtatattttcaagaatcaaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttgggaatttataataaagcattaagtgttcaaagtatgtatattttcaagaatcaaaag 120

                                                                       
Query: 121 attggtggtgaagttgatattcatcaagatagtacattccttcatacaacaccattaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attggtggtgaagttgatattcatcaagatagtacattccttcatacaacaccattaaca 180

                                                                       
Query: 181 acacatgcaatttggtttgcatttgaagattcaacaatngagaatggatgtcttcgtgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 acacatgcaatttggtttgcatttgaagattcaacaatngagaatggatgtcttcgtgga 240

                                                                       
Query: 241 ttaccaggatcacatacagagggaattacaagaagattcattacagatccaaatagtgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttaccaggatcacatacagagggaattacaagaagattcattacagatccaaatagtgaa 300

                                                                       
Query: 301 agtggttgttcattcattaaattagcagaagataaacaatataataaatctgatttcgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agtggttgttcattcattaaattagcagaagataaacaatataataaatctgatttcgtt 360

                                                                       
Query: 361 gcattggaatgtaaaaaaggtgatatcattctattggatggctcagttgtacattatagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gcattggaatgtaaaaaaggtgatatcattctattggatggctcagttgtacattatagt 420

                                                                       
Query: 421 gaaccaaatacatcaccaaattcacgtcatgcttatacacttcatttcattgaaggtgat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gaaccaaatacatcaccaaattcacgtcatgcttatacacttcatttcattgaaggtgat 480

                                                                       
Query: 481 aatggtgtaatttatgaaaatgataattggttacaatcagcaaaaccatttagngtatta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aatggtgtaatttatgaaaatgataattggttacaatcagcaaaaccatttagngtatta 540

                                                     
Query: 541 tnnnnnnnnntaaattatttttttaaaattttatttaatttt 582
           |         ||||||||||||||||||||||||||||||||
Sbjct: 541 taaaaaaaaataaattatttttttaaaattttatttaatttt 582


>Contig-U12577-1 (Contig-U12577-1Q) /CSM_Contig/Contig-U12577-1Q.Seq.d
          Length = 1781

 Score = 63.9 bits (32), Expect = 2e-10
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                            
Query: 551  taaattatttttttaaaattttatttaatttt 582
            ||||||||||||||||||||||||||||||||
Sbjct: 1753 taaattatttttttaaaattttatttaatttt 1722


>Contig-U12767-1 (Contig-U12767-1Q) /CSM_Contig/Contig-U12767-1Q.Seq.d
          Length = 963

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 555 ttatttttttaaaattttattt 576
           ||||||||||||||||||||||
Sbjct: 33  ttatttttttaaaattttattt 54


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,153
Number of Sequences: 6905
Number of extensions: 15153
Number of successful extensions: 2139
Number of sequences better than 10.0: 377
length of query: 605
length of database: 5,674,871
effective HSP length: 16
effective length of query: 589
effective length of database: 5,564,391
effective search space: 3277426299
effective search space used: 3277426299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11. 8
Homology vs DNA 
Query= Contig-U06431-1 (Contig-U06431-1Q) /CSM_Contig/Contig-U06431-1Q.Seq.d
         (605 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU262426) Dictyostelium discoideum vegetative cDNA clone:VS...  1059   0.0    1
(FH310398) CHO_OF4256xm20f1.ab1 CHO_OF4 Nicotiana tabacum ge...    50   0.093  1
(ET887558) CHO_OF035xo24r1.ab1 CHO_OF Nicotiana tabacum geno...    50   0.093  1
(ET887502) CHO_OF035xo24f1.ab1 CHO_OF Nicotiana tabacum geno...    50   0.093  1
(DT936186) BAAC-PNP1283G07.g1 C.remanei EST SB146 Caenorhabd...    50   0.093  1
(CU329665) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   0.14   3
(AC161155) Bos taurus clone CH240-97B15, WORKING DRAFT SEQUE...    48   0.20   3
(AC152201) Bos taurus clone CH240-3B13, WORKING DRAFT SEQUEN...    48   0.37   1
(AC230806) Bos taurus clone CH240-498N9, WORKING DRAFT SEQUE...    48   0.37   1
(AC219628) Bos taurus clone CH240-327A23, WORKING DRAFT SEQU...    48   0.37   1
(AC172473) Bos taurus clone CH240-263M20, WORKING DRAFT SEQU...    48   0.37   1
(DD120839) STAPHYLOCOCCUS AUREUS PROTEINS AND NUCLEIC ACIDS.       40   0.90   2
(CS710451) Sequence 2991 from Patent EP1829892.                    40   0.90   2
(AX620028) Sequence 2991 from Patent WO02094868.                   40   0.90   2
(FG974902) HTAO-aaa84e02.b1 Heterorhabditis_bacteriophora_ES...    36   1.1    3
(AC142479) Rattus norvegicus clone CH230-358P1, WORKING DRAF...    46   1.4    1
(AC119098) Rattus norvegicus clone CH230-183H24, WORKING DRA...    46   1.4    1
(CU469148) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.4    1
(AC226879) Monodelphis domestica clone VMRC18-937A17, WORKIN...    46   1.4    1
(AC216827) Zea mays chromosome 2 clone ZMMBBb-170J13; ZMMBBb...    46   1.4    1
(AC203373) Zea mays chromosome 2 clone CH201-480I7; ZMMBBc04...    46   1.4    1
(AC171888) Bos taurus clone CH240-262K13, WORKING DRAFT SEQU...    46   1.4    1
(EK123817) 1092966608589 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.4    1
(FK806571) HTAM-aaa27b11.g1 Heterorhabditis_bacteriophora_ES...    46   1.4    1
(AC173526) Bos taurus clone CH240-310L24, WORKING DRAFT SEQU...    40   2.0    4
(AL928736) Zebrafish DNA sequence from clone CH211-202D20 in...    40   2.1    4
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    38   2.2    8
(DU220881) 1098553733855 CHORI-243 Ovis aries genomic clone ...    42   2.3    2
(AR535454) Sequence 16 from patent US 6737248.                     40   2.6    3
(AR353898) Sequence 16 from patent US 6593114.                     40   2.6    3
(AC021049) Homo sapiens 12 BAC RP11-904M10 (Roswell Park Can...    34   2.8    2
(AK096106) Homo sapiens cDNA FLJ38787 fis, clone LIVER200183...    34   3.6    2
(AK248485) Hordeum vulgare subsp. vulgare cDNA clone: FLbaf1...    34   3.7    2
(AC148343) Medicago truncatula chromosome 7 clone mth2-70c24...    32   3.8    6
(AC111926) Rattus norvegicus clone CH230-103H18, *** SEQUENC...    36   3.9    4
(AC084459) Caenorhabditis briggsae cosmid CB032J19, complete...    44   4.1    2
(AC024699) Homo sapiens chromosome 8 clone RP11-37E7, WORKIN...    38   4.3    4
(AM445520) Vitis vinifera, whole genome shotgun sequence, co...    36   4.4    3
(AL034372) Human DNA sequence from clone RP1-273P12 on chrom...    42   4.7    3
(AC221683) Bos taurus clone CH240-389A10, WORKING DRAFT SEQU...    40   5.7    4
(AP008218) Oryza sativa (japonica cultivar-group) genomic DN...    44   5.7    1
(AL713943) Oryza sativa chromosome 12, . BAC OSJNBa0030G16 o...    44   5.7    1
(AC068875) Homo sapiens chromosome 15, clone RP11-720L8, com...    44   5.7    1
(AC154979) Bos taurus clone CH240-27F23, WORKING DRAFT SEQUE...    44   5.7    1
(AC112430) Rattus norvegicus clone CH230-112D11, *** SEQUENC...    44   5.7    1
(AC112010) Rattus norvegicus clone CH230-295N10, WORKING DRA...    44   5.7    1
(AC096382) Rattus norvegicus clone CH230-48G13, WORKING DRAF...    44   5.7    1
(AP010627) Lotus japonicus genomic DNA, chromosome 1, clone:...    44   5.7    1
(AC219479) Bos taurus clone CH240-333D19, WORKING DRAFT SEQU...    44   5.7    1
(AC218680) Bos taurus clone CH240-297H2, WORKING DRAFT SEQUE...    44   5.7    1
(AC216479) Cavia porcellus clone CH234-251K11, WORKING DRAFT...    44   5.7    1
(AC204459) Pteropus vampyrus clone CH279-429E9, WORKING DRAF...    44   5.7    1
(AC174454) Bos taurus clone CH240-93L13, WORKING DRAFT SEQUE...    44   5.7    1
(AC173504) Bos taurus clone CH240-332B7, WORKING DRAFT SEQUE...    44   5.7    1
(AC168987) Bos taurus clone CH240-233K23, WORKING DRAFT SEQU...    44   5.7    1
(AC166884) Oryctolagus cuniculus clone LB1-88B24, WORKING DR...    44   5.7    1
(FH511898) CHO_OF4705xb20r1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   5.7    1
(FH511819) CHO_OF4705xb20f1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   5.7    1
(FH243536) CHO_OF3122xc07f1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   5.7    1
(FH067918) CHO_OF3646xe13r1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   5.7    1
(DX577470) 52G19F VTPS Phytophthora sojae genomic clone 52G1...    44   5.7    1
(DU391311) 1098268234073 CHORI-243 Ovis aries genomic clone ...    44   5.7    1
(CU018623) Equus caballus GSS, BAC clone CH241-85H10, T7 end...    44   5.7    1
(CC532026) CH240_409K23.TARBAC13P2 CHORI-240 Bos taurus geno...    44   5.7    1
(CP000806) Cyanothece sp. ATCC 51142 circular chromosome, co...    44   5.7    1
(AC221771) Bos taurus clone CH240-385L6, WORKING DRAFT SEQUE...    40   6.0    5
(AC182128) Bos taurus clone CH240-487P15, WORKING DRAFT SEQU...    40   7.6    2
(CP000673) Clostridium kluyveri DSM 555, complete genome.          32   8.1    2
(AP003659) Mus musculus genomic DNA, chromosome 16q clone:RP...    34   8.5    4
(AC213575) Gorilla gorilla gorilla clone CH255-168C8, WORKIN...    36   9.2    6

>(AU262426) Dictyostelium discoideum vegetative cDNA clone:VSC243,
           3' end single read.
          Length = 606

 Score = 1059 bits (534), Expect = 0.0
 Identities = 540/540 (100%)
 Strand = Plus / Plus


Query: 1   ttaaatccaaaatttgaagaattttcatactctcaaaaaatacatgatttaatttattct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ttaaatccaaaatttgaagaattttcatactctcaaaaaatacatgatttaatttattct 60


Query: 61  ttgggaatttataataaagcattaagtgttcaaagtatgtatattttcaagaatcaaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttgggaatttataataaagcattaagtgttcaaagtatgtatattttcaagaatcaaaag 120


Query: 121 attggtggtgaagttgatattcatcaagatagtacattccttcatacaacaccattaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attggtggtgaagttgatattcatcaagatagtacattccttcatacaacaccattaaca 180


Query: 181 acacatgcaatttggtttgcatttgaagattcaacaatngagaatggatgtcttcgtgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 acacatgcaatttggtttgcatttgaagattcaacaatngagaatggatgtcttcgtgga 240


Query: 241 ttaccaggatcacatacagagggaattacaagaagattcattacagatccaaatagtgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttaccaggatcacatacagagggaattacaagaagattcattacagatccaaatagtgaa 300


Query: 301 agtggttgttcattcattaaattagcagaagataaacaatataataaatctgatttcgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agtggttgttcattcattaaattagcagaagataaacaatataataaatctgatttcgtt 360


Query: 361 gcattggaatgtaaaaaaggtgatatcattctattggatggctcagttgtacattatagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gcattggaatgtaaaaaaggtgatatcattctattggatggctcagttgtacattatagt 420


Query: 421 gaaccaaatacatcaccaaattcacgtcatgcttatacacttcatttcattgaaggtgat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gaaccaaatacatcaccaaattcacgtcatgcttatacacttcatttcattgaaggtgat 480


Query: 481 aatggtgtaatttatgaaaatgataattggttacaatcagcaaaaccatttagngtatta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aatggtgtaatttatgaaaatgataattggttacaatcagcaaaaccatttagngtatta 540

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 681,310,575
Number of extensions: 41810987
Number of successful extensions: 3232893
Number of sequences better than 10.0: 71
Length of query: 605
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 582
Effective length of database: 93,106,754,628
Effective search space: 54188131193496
Effective search space used: 54188131193496
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.21
Homology vs Protein 
Query= Contig-U06431-1 (Contig-U06431-1Q) /CSM_Contig/Contig-U06431-1Q.Seq.d
         (605 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54XH6) RecName: Full=Phytanoyl-CoA dioxygenase domain-containi...   358   8e-98
CP001330_154(CP001330|pid:none) Micromonas sp. RCC299 chromosome...   163   3e-39
AC005560_11(AC005560|pid:none) Arabidopsis thaliana chromosome 2...   153   3e-36
AY088080_1(AY088080|pid:none) Arabidopsis thaliana clone 41002 m...   153   3e-36
EF146845_1(EF146845|pid:none) Populus trichocarpa clone WS01214_...   144   2e-33
(Q9DB26) RecName: Full=Phytanoyl-CoA dioxygenase domain-containi...   142   7e-33
AK005293_1(AK005293|pid:none) Mus musculus adult male cerebellum...   142   7e-33
EF082748_1(EF082748|pid:none) Picea sitchensis clone WS02726_E20...   141   2e-32
(Q5U3U0) RecName: Full=Phytanoyl-CoA dioxygenase domain-containi...   140   2e-32
BC157790_1(BC157790|pid:none) Xenopus tropicalis hypothetical pr...   140   2e-32
(Q0IIB1) RecName: Full=Phytanoyl-CoA dioxygenase domain-containi...   133   3e-30
CP000587_356(CP000587|pid:none) Ostreococcus lucimarinus CCE9901...   133   4e-30
CR954207_349(CR954207|pid:none) Ostreococcus tauri strain OTTH05...   132   7e-30
(Q9NAM7) RecName: Full=Phytanoyl-CoA dioxygenase domain-containi...   131   1e-29
(P0C660) RecName: Full=Phytanoyl-CoA dioxygenase domain-containi...   131   1e-29
BT083244_1(BT083244|pid:none) Anoplopoma fimbria clone afim-evh-...   126   4e-28
EU970679_1(EU970679|pid:none) Zea mays clone 348804 unknown mRNA.     126   5e-28
AE017349_371(AE017349|pid:none) Cryptococcus neoformans var. neo...   123   5e-27
FN392319_1493(FN392319|pid:none) Pichia pastoris GS115 chromosom...   122   8e-27
BT081197_1(BT081197|pid:none) Caligus clemensi clone ccle-evs-50...   122   1e-26
CP000388_1671(CP000388|pid:none) Pseudoalteromonas atlantica T6c...   120   3e-26
BC145356_1(BC145356|pid:none) Mus musculus phytanoyl-CoA dioxyge...   117   2e-25
CU640366_1335(CU640366|pid:none) Podospora anserina genomic DNA ...   115   1e-24
CR628336_2753(CR628336|pid:none) Legionella pneumophila str. Par...   115   1e-24
AE017354_2644(AE017354|pid:none) Legionella pneumophila subsp. p...   115   1e-24
AL807369_9(AL807369|pid:none) Neurospora crassa DNA linkage grou...   114   2e-24
CP000155_3058(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...   111   1e-23
CR628337_2632(CR628337|pid:none) Legionella pneumophila str. Len...   111   1e-23
AF374376_22(AF374376|pid:none) Oikopleura dioica clone BAC clone...   106   6e-22
AL845258_13(AL845258|pid:none) Mouse DNA sequence from clone RP2...   104   2e-21
AP007171_364(AP007171|pid:none) Aspergillus oryzae RIB40 genomic...   102   8e-21
AM270131_63(AM270131|pid:none) Aspergillus niger contig An07c013...   101   1e-20
AL845258_10(AL845258|pid:none) Mouse DNA sequence from clone RP2...    97   3e-19
D84425(D84425)hypothetical protein At2g01490 [imported] - Arabid...    90   6e-17
AL672142_5(AL672142|pid:none) Human DNA sequence from clone RP11...    83   7e-15
CR628336_578(CR628336|pid:none) Legionella pneumophila str. Pari...    82   1e-14
CP000675_573(CP000675|pid:none) Legionella pneumophila str. Corb...    82   1e-14
AE017354_504(AE017354|pid:none) Legionella pneumophila subsp. pn...    82   2e-14
CP001618_67(CP001618|pid:none) Beutenbergia cavernae DSM 12333, ...    63   6e-09
AM463144_7(AM463144|pid:none) Vitis vinifera contig VV78X078650....    63   6e-09
BT083375_1(BT083375|pid:none) Drosophila melanogaster IP09588 fu...    63   7e-09
AJ421798_9(AJ421798|pid:none) Streptomyces cattleya thienamycin ...    62   1e-08
CT573213_2482(CT573213|pid:none) Frankia alni str. ACN14A chromo...    60   4e-08
BX294146_112(BX294146|pid:none) Rhodopirellula baltica SH 1 comp...    59   1e-07
AJ421798_19(AJ421798|pid:none) Streptomyces cattleya thienamycin...    57   4e-07
CP000473_3619(CP000473|pid:none) Solibacter usitatus Ellin6076, ...    57   5e-07
BT066987_1(BT066987|pid:none) Zea mays full-length cDNA clone ZM...    57   5e-07
AL672142_6(AL672142|pid:none) Human DNA sequence from clone RP11...    55   1e-06
AY648943_1(AY648943|pid:none) Oscillatoria spongeliae putative 2...    54   3e-06
CU207366_1695(CU207366|pid:none) Gramella forsetii KT0803 comple...    54   3e-06
BC097873_1(BC097873|pid:none) Xenopus laevis hypothetical protei...    54   4e-06
CP001504_807(CP001504|pid:none) Burkholderia glumae BGR1 chromos...    54   4e-06
AY628171_1(AY628171|pid:none) Oscillatoria spongeliae 35P1 DysB1...    53   6e-06
CP000615_1588(CP000615|pid:none) Burkholderia vietnamiensis G4 c...    52   2e-05
AY648945_1(AY648945|pid:none) Lyngbya majuscula putative 2-oxogl...    51   2e-05
AF516145_3(AF516145|pid:none) Lyngbya majuscula barbamide biosyn...    51   3e-05
AX195946_1(AX195946|pid:none) Sequence 18 from Patent WO0151639.       50   4e-05
AY391839_4(AY391839|pid:none) Pseudomonas savastanoi pv. glycine...    50   4e-05
CP000248_779(CP000248|pid:none) Novosphingobium aromaticivorans ...    50   5e-05
CP000085_1218(CP000085|pid:none) Burkholderia thailandensis E264...    50   6e-05
AY628172_1(AY628172|pid:none) Oscillatoria spongeliae 35P1 DysB2...    49   8e-05
AF187532_8(AF187532|pid:none) Streptomyces nogalater SnoN (snoN)...    49   1e-04
CP000282_1257(CP000282|pid:none) Saccharophagus degradans 2-40, ...    49   1e-04
BC153669_1(BC153669|pid:none) Danio rerio zgc:174917, mRNA (cDNA...    48   2e-04
CP000125_147(CP000125|pid:none) Burkholderia pseudomallei 1710b ...    48   2e-04
CP000571_1651(CP000571|pid:none) Burkholderia pseudomallei 668 c...    48   2e-04
BX571966_1208(BX571966|pid:none) Burkholderia pseudomallei strai...    48   2e-04
CP001076_350(CP001076|pid:none) Rhizobium etli CIAT 652 plasmid ...    48   2e-04
CP000264_2051(CP000264|pid:none) Jannaschia sp. CCS1, complete g...    48   2e-04
AY648944_1(AY648944|pid:none) Lyngbya majuscula putative 2-oxogl...    48   2e-04
CP000085_562(CP000085|pid:none) Burkholderia thailandensis E264 ...    47   3e-04
BX571966_1846(BX571966|pid:none) Burkholderia pseudomallei strai...    47   3e-04
CP000828_329(CP000828|pid:none) Acaryochloris marina MBIC11017, ...    47   4e-04
CP000388_1946(CP000388|pid:none) Pseudoalteromonas atlantica T6c...    47   5e-04
CP000828_338(CP000828|pid:none) Acaryochloris marina MBIC11017, ...    46   7e-04
EF012267_1(EF012267|pid:none) Epichloe festucae isolate 1035.30 ...    46   7e-04
CP000442_473(CP000442|pid:none) Burkholderia ambifaria AMMD chro...    46   0.001
AF127374_34(AF127374|pid:none) Streptomyces lavendulae LinA-like...    46   0.001
CP000774_852(CP000774|pid:none) Parvibaculum lavamentivorans DS-...    45   0.001
CP001503_1626(CP001503|pid:none) Burkholderia glumae BGR1 chromo...    45   0.001
CP001001_5069(CP001001|pid:none) Methylobacterium radiotolerans ...    45   0.001
AY723749_9(AY723749|pid:none) Neotyphodium uncinatum isolate e16...    45   0.002
EF012268_1(EF012268|pid:none) Neotyphodium coenophialum isolate ...    45   0.002
CP000362_629(CP000362|pid:none) Roseobacter denitrificans OCh 11...    44   0.003
(O14832) RecName: Full=Phytanoyl-CoA dioxygenase, peroxisomal;  ...    44   0.003
DQ311206_1(DQ311206|pid:none) Bombyx mori phytanoyl-CoA dioxygen...    44   0.005
CP000830_2998(CP000830|pid:none) Dinoroseobacter shibae DFL 12, ...    44   0.005
AL138764_4(AL138764|pid:none) Human DNA sequence from clone RP11...    44   0.005
EF012269_1(EF012269|pid:none) Neotyphodium sp. PauTG-1 LolE (Lol...    43   0.006
CP000570_787(CP000570|pid:none) Burkholderia pseudomallei 668 ch...    43   0.006
DQ309528_1(DQ309528|pid:none) Anthopleura elegantissima phytanoy...    43   0.006
CP001504_238(CP001504|pid:none) Burkholderia glumae BGR1 chromos...    43   0.008
AY974560_2(AY974560|pid:none) Lyngbya majuscula hectochlorin bio...    43   0.008
CP001069_946(CP001069|pid:none) Ralstonia pickettii 12J chromoso...    42   0.010
CP000031_2952(CP000031|pid:none) Ruegeria pomeroyi DSS-3, comple...    42   0.010
(O35386) RecName: Full=Phytanoyl-CoA dioxygenase, peroxisomal;  ...    42   0.013
D88670_1(D88670|pid:none) Mus musculus mRNA for LN1, complete cd...    42   0.013
AF011925_1(AF011925|pid:none) Bos taurus LN1 mRNA, complete cds.       42   0.013
BX572594_121(BX572594|pid:none) Rhodopseudomonas palustris CGA00...    42   0.013
BA000040_2133(BA000040|pid:none) Bradyrhizobium japonicum USDA 1...    42   0.017
CR542055_1(CR542055|pid:none) Homo sapiens full open reading fra...    42   0.017
AK168648_1(AK168648|pid:none) Mus musculus 17 days embryo heart ...    42   0.017
AL672114_41(AL672114|pid:none) Mesorhizobium loti R7A symbiosis ...    41   0.023
CT573213_287(CT573213|pid:none) Frankia alni str. ACN14A chromos...    41   0.023
BA000012_4610(BA000012|pid:none) Mesorhizobium loti MAFF303099 D...    41   0.023
CP000393_3464(CP000393|pid:none) Trichodesmium erythraeum IMS101...    41   0.029
AP009179_232(AP009179|pid:none) Sulfurovum sp. NBC37-1 genomic D...    40   0.038
BX548175_1781(BX548175|pid:none) Prochlorococcus marinus MIT9313...    40   0.038
CP000362_1640(CP000362|pid:none) Roseobacter denitrificans OCh 1...    40   0.050
CP000959_842(CP000959|pid:none) Burkholderia cenocepacia MC0-3 c...    40   0.066
DQ438988_23(DQ438988|pid:none) Theonella swinhoei bacterial symb...    40   0.066
CP000075_2609(CP000075|pid:none) Pseudomonas syringae pv. syring...    40   0.066
CP000353_12(CP000353|pid:none) Ralstonia metallidurans CH34 mega...    40   0.066
CP000091_2092(CP000091|pid:none) Ralstonia eutropha JMP134 chrom...    40   0.066
AE008923_3548(AE008923|pid:none) Xanthomonas axonopodis pv. citr...    39   0.086
(O62515) RecName: Full=Probable phytanoyl-CoA dioxygenase;      ...    39   0.086
CP000378_1533(CP000378|pid:none) Burkholderia cenocepacia AU 105...    39   0.11
CP000960_910(CP000960|pid:none) Burkholderia cenocepacia MC0-3 c...    39   0.11
EU016599_29(EU016599|pid:none) Uncultured Group I marine crenarc...    39   0.15
CP000554_2315(CP000554|pid:none) Prochlorococcus marinus str. MI...    39   0.15
U25130_2(U25130|pid:none) Pseudomonas syringae pv. syringae syri...    38   0.19
CP000031_2382(CP000031|pid:none) Ruegeria pomeroyi DSS-3, comple...    38   0.19
BC076646_1(BC076646|pid:none) Xenopus laevis phytanoyl-CoA hydro...    38   0.25
AF333038_26(AF333038|pid:none) Streptomyces viridochromogenes Av...    38   0.25
CP000121_3(CP000121|pid:none) Anabaena variabilis ATCC 29413 pla...    37   0.33
CP000248_1477(CP000248|pid:none) Novosphingobium aromaticivorans...    37   0.43
CU633750_170(CU633750|pid:none) Cupriavidus taiwanensis str. LMG...    37   0.43
CU694393_103(CU694393|pid:none) Ralstonia solanacearum strain Mo...    37   0.56
CU914166_1221(CU914166|pid:none) Ralstonia solanacearum strain I...    37   0.56
CP000282_114(CP000282|pid:none) Saccharophagus degradans 2-40, c...    37   0.56
CP001069_147(CP001069|pid:none) Ralstonia pickettii 12J chromoso...    36   0.73
CR382139_1066(CR382139|pid:none) Debaryomyces hansenii strain CB...    36   0.73
AL646053_209(AL646053|pid:none) Ralstonia solanacearum GMI1000 m...    36   0.73
CP000157_2218(CP000157|pid:none) Erythrobacter litoralis HTCC259...    36   0.95
AX195992_1(AX195992|pid:none) Sequence 64 from Patent WO0151639.       36   0.95
CP000764_2044(CP000764|pid:none) Bacillus cereus subsp. cytotoxi...    35   1.2
AL138764_6(AL138764|pid:none) Human DNA sequence from clone RP11...    35   1.2
CP000113_3867(CP000113|pid:none) Myxococcus xanthus DK 1622, com...    35   1.6
CP001025_2963(CP001025|pid:none) Burkholderia ambifaria MC40-6 c...    35   1.6
CP000453_387(CP000453|pid:none) Alkalilimnicola ehrlichii MLHE-1...    35   2.1
CP000774_2662(CP000774|pid:none) Parvibaculum lavamentivorans DS...    35   2.1
EU074211_23(EU074211|pid:none) Kutzneria sp. 744 regulator gene,...    35   2.1
CR543861_1792(CR543861|pid:none) Acinetobacter sp. ADP1 complete...    35   2.1
CP000440_3115(CP000440|pid:none) Burkholderia ambifaria AMMD chr...    34   2.8
AM746336_45(AM746336|pid:none) Streptomyces collinus kirromycin ...    34   2.8
CP000774_212(CP000774|pid:none) Parvibaculum lavamentivorans DS-...    34   2.8
AY560113_1(AY560113|pid:none) Feline calicivirus isolate UTCVM-N...    34   3.6
AY442931_32(AY442931|pid:none) Agrobacterium tumefaciens plasmid...    34   3.6
CP000459_2636(CP000459|pid:none) Burkholderia cenocepacia HI2424...    33   4.7
BA000022_3053(BA000022|pid:none) Synechocystis sp. PCC 6803 DNA,...    33   4.7
CP000085_1696(CP000085|pid:none) Burkholderia thailandensis E264...    33   4.7
AB196489_1(AB196489|pid:none) Physcomitrella patens PBP gene for...    33   4.7
CP000316_1683(CP000316|pid:none) Polaromonas sp. JS666, complete...    33   4.7
CP000082_762(CP000082|pid:none) Psychrobacter arcticus 273-4, co...    33   6.1
CP000593_50(CP000593|pid:none) Ostreococcus lucimarinus CCE9901 ...    33   6.1
AK071128_1(AK071128|pid:none) Oryza sativa Japonica Group cDNA c...    33   6.1
CP000854_2292(CP000854|pid:none) Mycobacterium marinum M, comple...    33   6.1
CP000713_78(CP000713|pid:none) Psychrobacter sp. PRwf-1, complet...    33   6.1
(P67770) RecName: Full=Uncharacterized protein Rv1501/MT1550;  &...    33   8.0
CP000655_322(CP000655|pid:none) Polynucleobacter necessarius sub...    33   8.0
CP000717_1532(CP000717|pid:none) Mycobacterium tuberculosis F11,...    33   8.0

>(Q54XH6) RecName: Full=Phytanoyl-CoA dioxygenase domain-containing
           protein 1 homolog;          EC=1.-.-.-;
          Length = 281

 Score =  358 bits (918), Expect = 8e-98
 Identities = 174/179 (97%), Positives = 174/179 (97%)
 Frame = +1

Query: 1   LNPKFEEFSYSQKIHDLIYSLGIYNKALSVQSMYIFKNQKIGGEVDIHQDSTFLHTTPLT 180
           LNPKFEEFSYSQKIHDLIYSLGIYNKALS   MYIFKNQKIGGEVDIHQDSTFLHTTPLT
Sbjct: 103 LNPKFEEFSYSQKIHDLIYSLGIYNKALS-GIMYIFKNQKIGGEVDIHQDSTFLHTTPLT 161

Query: 181 THAIWFAFEDSTXENGCLRGLPGSHTEGITRRFITDPNSESGCSFIKLAEDKQYNKSDFV 360
           THAIWFAFEDST ENGCLRGLPGSHTEGITRRFITDPNSESGCSFIKLAEDKQYNKSDFV
Sbjct: 162 THAIWFAFEDSTIENGCLRGLPGSHTEGITRRFITDPNSESGCSFIKLAEDKQYNKSDFV 221

Query: 361 ALECKKGDIILLDGSVVHYSEPNTSPNSRHAYTLHFIEGDNGVIYENDNWLQSAKPFXV 537
           ALECKKGDIILLDGSVVHYSEPNTSPNSRHAYTLHFIEGDNGVIYENDNWLQSAKPF V
Sbjct: 222 ALECKKGDIILLDGSVVHYSEPNTSPNSRHAYTLHFIEGDNGVIYENDNWLQSAKPFRV 280

Lambda     K      H
   0.317    0.135    0.410

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 887,821,166
Number of extensions: 16883930
Number of successful extensions: 43329
Number of sequences better than 10.0: 161
Number of HSP's gapped: 43165
Number of HSP's successfully gapped: 162
Length of query: 201
Length of database: 1,040,966,779
Length adjustment: 122
Effective length of query: 79
Effective length of database: 650,044,009
Effective search space: 51353476711
Effective search space used: 51353476711
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.75  gvh: 0.50  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U06431-1 is cyt
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0