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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U06430-1
Contig ID Contig-U06430-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U06430-1 (Contig-U06430-1Q) /CSM_Contig/Contig-U06430-1Q.Seq.d
TGGGCACATATTTTAGTATATGAACAAACCAATTCAACTTTAAATAATCT
TTGGAAATGGCGTAAAATTTTGGCAACTAAAATTCAACCAAAAGTAACCG
AAGCTATCTTATCAGTCTATGGTAATCATATACTTAATAGTTGGGGTGGA
AATTATCGTAAAGCTATAAATCAACTATTTGATATCTATACAAAATCATT
AGAATTTCAAACTTTTAATAAACAATTATCATTAAATAATTTATTTAATA
AATTTATAAATGAAGATCAATATCAACAACCACAACAACCACAACAACCA
CAACAAACTAATGAAAAAGGACAATTATCAATGGATCAAAAAAGTTTAAT
TTTATCATCAATTGGTAGTGATATTTTATTTGAATCACCAAATACTTTAA
ATCAATTAAAATCTTTACAAACTGATATAAAATTACCAACAATTTCAAAT
AATGATGAAGAAAATTTTAAAAATAATATTTTACCAAGTTTTACAAATTT
ATCAAATAATATAATTAAATTTATAAATGATAATAAAAAATAAATAAAAA
AATA
Gap no gap
Contig length 554
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 4649847
End point 4649293
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U06430
List of clone(s) 

est1=VSC241Z,1,555
Translated Amino Acid sequence 
WAHILVYEQTNSTLNNLWKWRKILATKIQPKVTEAILSVYGNHILNSWGGNYRKAINQLF
DIYTKSLEFQTFNKQLSLNNLFNKFINEDQYQQPQQPQQPQQTNEKGQLSMDQKSLILSS
IGSDILFESPNTLNQLKSLQTDIKLPTISNNDEENFKNNILPSFTNLSNNIIKFINDNKK
*ikk
Translated Amino Acid sequence (All Frames) 
Frame A:
WAHILVYEQTNSTLNNLWKWRKILATKIQPKVTEAILSVYGNHILNSWGGNYRKAINQLF
DIYTKSLEFQTFNKQLSLNNLFNKFINEDQYQQPQQPQQPQQTNEKGQLSMDQKSLILSS
IGSDILFESPNTLNQLKSLQTDIKLPTISNNDEENFKNNILPSFTNLSNNIIKFINDNKK
*ikk


Frame B:
ghif*ymnkpiql*iifgngvkfwqlkfnqk*pklsyqsmviiylivgveiivkl*inyl
isiqnh*nfkllinnyh*iiylinl*mkininnhnnhnnhnklmkkdnyqwikkv*fyhq
lvvifylnhqil*in*nlykli*nyqqfqimmkkilkiifyqvlqiyqii*lnl*miikn
k*kn


Frame C:
gtyfsi*tnqfnfk*slema*nfgn*nstksnrsylislw*syt**lgwkls*syksti*
ylykiirisnf**tiiik*fi**iyk*rsisttttttttttn**krtiingskkfnfiin
w**yfi*itkyfksikiftn*ykitnnfk***rkf*k*yftkfykfik*yn*iyk***ki
nkki
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06430-1 (Contig-U06430-1Q)
/CSM_Contig/Contig-U06430-1Q.Seq.d
         (554 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06430-1 (Contig-U06430-1Q) /CSM_Contig/Conti...   539  e-153
Contig-U00222-1 (Contig-U00222-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U10400-1 (Contig-U10400-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U09333-1 (Contig-U09333-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U13483-1 (Contig-U13483-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U11902-1 (Contig-U11902-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U10542-1 (Contig-U10542-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U09087-1 (Contig-U09087-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U08910-1 (Contig-U08910-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U14562-1 (Contig-U14562-1Q) /CSM_Contig/Conti...    36  0.039

>Contig-U06430-1 (Contig-U06430-1Q) /CSM_Contig/Contig-U06430-1Q.Seq.d
          Length = 554

 Score =  539 bits (272), Expect = e-153
 Identities = 272/272 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggcacatattttagtatatgaacaaaccaattcaactttaaataatctttggaaatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tgggcacatattttagtatatgaacaaaccaattcaactttaaataatctttggaaatgg 60

                                                                       
Query: 61  cgtaaaattttggcaactaaaattcaaccaaaagtaaccgaagctatcttatcagtctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cgtaaaattttggcaactaaaattcaaccaaaagtaaccgaagctatcttatcagtctat 120

                                                                       
Query: 121 ggtaatcatatacttaatagttggggtggaaattatcgtaaagctataaatcaactattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggtaatcatatacttaatagttggggtggaaattatcgtaaagctataaatcaactattt 180

                                                                       
Query: 181 gatatctatacaaaatcattagaatttcaaacttttaataaacaattatcattaaataat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gatatctatacaaaatcattagaatttcaaacttttaataaacaattatcattaaataat 240

                                           
Query: 241 ttatttaataaatttataaatgaagatcaata 272
           ||||||||||||||||||||||||||||||||
Sbjct: 241 ttatttaataaatttataaatgaagatcaata 272


 Score =  367 bits (185), Expect = e-102
 Identities = 185/185 (100%)
 Strand = Plus / Plus

                                                                       
Query: 309 taatgaaaaaggacaattatcaatggatcaaaaaagtttaattttatcatcaattggtag 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 taatgaaaaaggacaattatcaatggatcaaaaaagtttaattttatcatcaattggtag 368

                                                                       
Query: 369 tgatattttatttgaatcaccaaatactttaaatcaattaaaatctttacaaactgatat 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tgatattttatttgaatcaccaaatactttaaatcaattaaaatctttacaaactgatat 428

                                                                       
Query: 429 aaaattaccaacaatttcaaataatgatgaagaaaattttaaaaataatattttaccaag 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aaaattaccaacaatttcaaataatgatgaagaaaattttaaaaataatattttaccaag 488

                
Query: 489 tttta 493
           |||||
Sbjct: 489 tttta 493


 Score = 30.2 bits (15), Expect = 2.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 249 taaatttataaatga 263
           |||||||||||||||
Sbjct: 516 taaatttataaatga 530


>Contig-U00222-1 (Contig-U00222-1Q) /CSM_Contig/Contig-U00222-1Q.Seq.d
          Length = 1286

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 214 tttaataaacaattatcattaa 235
           ||||||||||||||||||||||
Sbjct: 765 tttaataaacaattatcattaa 786


>Contig-U10400-1 (Contig-U10400-1Q) /CSM_Contig/Contig-U10400-1Q.Seq.d
          Length = 806

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 34 tcaactttaaataatctttggaaa 57
          |||| |||||||||||||||||||
Sbjct: 21 tcaagtttaaataatctttggaaa 44


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,149
Number of Sequences: 6905
Number of extensions: 16149
Number of successful extensions: 2397
Number of sequences better than 10.0: 827
length of query: 554
length of database: 5,674,871
effective HSP length: 16
effective length of query: 538
effective length of database: 5,564,391
effective search space: 2993642358
effective search space used: 2993642358
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11. 8
Homology vs DNA 
Query= Contig-U06430-1 (Contig-U06430-1Q) /CSM_Contig/Contig-U06430-1Q.Seq.d
         (554 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU262424) Dictyostelium discoideum vegetative cDNA clone:VS...   391   0.0    2
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...   391   0.0    2
(EK169391) 1095458068704 Global-Ocean-Sampling_GS-31-01-01-1...    40   0.067  2
(EK167329) 1095458059116 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.33   1
(EJ542210) 1092955392235 Global-Ocean-Sampling_GS-29-01-01-1...    44   0.67   2
(EJ559381) 1092959535858 Global-Ocean-Sampling_GS-29-01-01-1...    44   0.71   2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    32   0.84   7
(EK413716) 1095505926832 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.3    1
(EK402389) 1095469545207 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.3    1
(EK206910) 1095460077730 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.3    1
(EK138208) 1095454029187 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.3    1
(EK080131) 1092961097702 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.3    1
(EK079872) 1092961092710 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.3    1
(EK023871) 1092955349986 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.3    1
(CG922658) MBEAK80TFB mth2 Medicago truncatula genomic clone...    46   1.3    1
(EC430960) 165364930 Sea Urchin Testis cDNA library Strongyl...    46   1.3    1
(CX243899) NMA02656 Mus Musculus Lateral Ventricle Wall C57B...    46   1.3    1
(BI271815) NF019G01FL1F1007 Developing flower Medicago trunc...    46   1.3    1
(BF640280) NF041F08IN1F1074 Insect herbivory Medicago trunca...    46   1.3    1
(BE326195) NF086F12ST1F1096 Developing stem Medicago truncat...    46   1.3    1
(CP000447) Shewanella frigidimarina NCIMB 400, complete genome.    34   2.1    2
(AZ547496) ENTGI94TR Entamoeba histolytica Sheared DNA Entam...    38   2.6    2
(EK285731) 1095462311807 Global-Ocean-Sampling_GS-31-01-01-1...    38   2.7    2
(EJ044349) 1095454111818 Global-Ocean-Sampling_GS-26-01-01-1...    34   3.4    2
(EK083718) 1092961126790 Global-Ocean-Sampling_GS-31-01-01-1...    34   3.4    2
(CR847971) Zebrafish DNA sequence from clone CH211-147M20 in...    44   5.2    1
(BV498737) S217P60232RH11.T0 Noemie Pan troglodytes troglody...    44   5.2    1
(BV454816) pzm42b06.g1 Clint Pan troglodytes verus STS genom...    44   5.2    1
(BC149192) Bos taurus cDNA clone IMAGE:8491746.                    44   5.2    1
(AL021812) Human DNA sequence from clone LL0XNC01-86H4 on ch...    44   5.2    1
(AC150303) Papio anubis clone RP41-211H10, WORKING DRAFT SEQ...    44   5.2    1
(AC149048) Papio anubis clone RP41-292A12, WORKING DRAFT SEQ...    44   5.2    1
(CU469434) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.2    1
(CU062404) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.2    1
(AC209591) Chlorocebus aethiops clone CH252-120F18, WORKING ...    44   5.2    1
(AC201236) Strongylocentrotus purpuratus clone R3-15K12, WOR...    44   5.2    1
(AC193720) Colobus guereza clone CH272-451F1, WORKING DRAFT ...    44   5.2    1
(AC181713) Strongylocentrotus purpuratus clone R3-1039K18, W...    44   5.2    1
(AC176161) Strongylocentrotus purpuratus clone R3-2O17, WORK...    44   5.2    1
(AC171637) Macaca mulatta clone CH250-531E22, WORKING DRAFT ...    44   5.2    1
(AC169989) Macaca mulatta clone CH250-2M7, WORKING DRAFT SEQ...    44   5.2    1
(ER498204) 1093015355936 Global-Ocean-Sampling_GS-35-01-01-1...    44   5.2    1
(EI082055) hgy0006df06.b1 hgy Oryza officinalis genomic clon...    44   5.2    1
(CZ216807) AIAA-aaf22e15.g1 Ancylostoma caninum whole genome...    44   5.2    1
(ES346576) u4g16ca.f1 cattle subcutaneous adipose tissue cDN...    44   5.2    1
(EH210519) LB0335.CR_L23 GC_BGC-33 Bos taurus cDNA clone IMA...    44   5.2    1
(EH157814) LB01364.CR_P19 GC_BGC-13 Bos taurus cDNA clone IM...    44   5.2    1
(EE957776) J41371A FNM Bos taurus cDNA clone J4137 3', mRNA ...    44   5.2    1
(EE860680) 010914OSTA102058HT OSTA Ovis aries cDNA, mRNA seq...    44   5.2    1
(EE775454) 030729OM1351014013HT OM135 Ovis aries cDNA, mRNA ...    44   5.2    1
(EE773744) 020709OFM1028062HT OFM1 Ovis aries cDNA, mRNA seq...    44   5.2    1
(EE758068) 020605OCS411017066HT OCS4 Ovis aries cDNA, mRNA s...    44   5.2    1
(EE757742) 020605OCS411004051HT OCS4 Ovis aries cDNA, mRNA s...    44   5.2    1
(EE757420) 020605OCS411006067HT OCS4 Ovis aries cDNA, mRNA s...    44   5.2    1
(EE379469) LB03054.CR_N01 GC_BGC-30 Bos taurus cDNA clone IM...    44   5.2    1
(EE369916) LB029112.CR_C11 GC_BGC-29 Bos taurus cDNA clone I...    44   5.2    1
(EE365638) LB02973.CR_M23 GC_BGC-29 Bos taurus cDNA clone IM...    44   5.2    1
(EE364658) LB02967.CR_L03 GC_BGC-29 Bos taurus cDNA clone IM...    44   5.2    1
(EE363311) LB029100.CR_G13 GC_BGC-29 Bos taurus cDNA clone I...    44   5.2    1
(EE356265) LB02955.CR_G20 GC_BGC-29 Bos taurus cDNA clone IM...    44   5.2    1
(EE353950) LB02948.CR_A22 GC_BGC-29 Bos taurus cDNA clone IM...    44   5.2    1
(EE252139) LB0238.CR_P20 GC_BGC-23 Bos taurus cDNA clone IMA...    44   5.2    1
(EE237266) LB0217.CR_C14 GC_BGC-21 Bos taurus cDNA clone IMA...    44   5.2    1
(EE234634) LB02122.CR_L01 GC_BGC-21 Bos taurus cDNA clone IM...    44   5.2    1
(EE232899) LB02115.CR_N20 GC_BGC-21 Bos taurus cDNA clone IM...    44   5.2    1
(EB103281) Hh_ystG_56E04_T3 1 day-old yolk-sac larvae(trunk)...    44   5.2    1
(DY515520) sh3P0031I22_F.ab1 adult sheep fracture callus 10d...    44   5.2    1
(DY508798) sh3P0010H18_F.ab1 adult sheep fracture callus 10d...    44   5.2    1
(DY504087) sh2P0049F04_F.ab1 adult sheep fracture callus 7d ...    44   5.2    1
(DY502969) sh2P0045H20_F.ab1 adult sheep fracture callus 7d ...    44   5.2    1
(DY500202) sh2P0036P17_F.ab1 adult sheep fracture callus 7d ...    44   5.2    1
(DY495721) sh2P0016N06_F.ab1 adult sheep fracture callus 7d ...    44   5.2    1
(DY493437) sh2P0009G14_F.ab1 adult sheep fracture callus 7d ...    44   5.2    1
(DY484309) sh1-bng21_l0.s2 adult sheep fracture callus pool ...    44   5.2    1
(DY484163) sh1-bmm24_l0.s2 adult sheep fracture callus pool ...    44   5.2    1
(DY483453) sh1-bjl01_l0.s2 adult sheep fracture callus pool ...    44   5.2    1
(DY478130) sh1-aki03_l0.s2 adult sheep fracture callus pool ...    44   5.2    1
(DY475789) sh1-aan14_l0.s2 adult sheep fracture callus pool ...    44   5.2    1
(DY475700) sh1-aai14_l0.s2 adult sheep fracture callus pool ...    44   5.2    1
(DY167511) 000715BINA002418HT BINA Bos taurus cDNA 5', mRNA ...    44   5.2    1
(DY102408) 001023BUTA004126HT BUTA Bos taurus cDNA 5', mRNA ...    44   5.2    1
(DY095836) 000821BEMN999087HT BEMN Bos taurus cDNA 5', mRNA ...    44   5.2    1
(DV924791) LB0296.CR_G04 GC_BGC-29 Bos taurus cDNA clone IMA...    44   5.2    1
(DV920724) LB02922.CR_N07 GC_BGC-29 Bos taurus cDNA clone IM...    44   5.2    1
(DV917915) LB02911.CR_G04 GC_BGC-29 Bos taurus cDNA clone IM...    44   5.2    1
(DV917539) LB02910.CR_D01 GC_BGC-29 Bos taurus cDNA clone IM...    44   5.2    1
(DV905004) LB0212.CR_C15 GC_BGC-21 Bos taurus cDNA clone IMA...    44   5.2    1
(DV781781) Hw_FAT_19_050524_H12 Bos taurus CF-24-HW fat cDNA...    44   5.2    1
(DT844552) LB004103.CR_M07 GC_BGC-04 Bos taurus cDNA clone I...    44   5.2    1
(DT812753) LB01619.CR_H05 GC_BGC-16 Bos taurus cDNA clone IM...    44   5.2    1
(DT723115) LB0142.CR_L22 GC_BGC-14 Bos taurus cDNA clone IMA...    44   5.2    1
(DN642522) UMC-bof_0B01-015-a06 Ovarian Follicle bof Bos tau...    44   5.2    1
(AU231532) Bos taurus cDNA clone:Cln425, 3' end, expressed i...    44   5.2    1
(CV983590) UMC-bof_0A02-004-f08 Ovarian follicle pre-ovulato...    44   5.2    1
(CV982713) UMC-bmix_0B02-001-d08 Day 3 Corpus Luteum bmix Bo...    44   5.2    1
(CV982091) UMC-bmix_0A02-009-f07 Day 3 Corpus Luteum bmix Bo...    44   5.2    1
(AM037243) Bos indicus 3' EST, clone C0007404c22.                  44   5.2    1
(AM036719) Bos indicus 5' EST, clone C0007404c22.                  44   5.2    1
(AM019109) Bos taurus 5' EST, clone C0007418h10.                   44   5.2    1
(AM018288) Bos taurus 3' EST, clone C0007418h10.                   44   5.2    1

>(AU262424) Dictyostelium discoideum vegetative cDNA clone:VSC241,
           3' end single read.
          Length = 555

 Score =  391 bits (197), Expect(2) = 0.0
 Identities = 197/197 (100%)
 Strand = Plus / Plus


Query: 1   tgggcacatattttagtatatgaacaaaccaattcaactttaaataatctttggaaatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tgggcacatattttagtatatgaacaaaccaattcaactttaaataatctttggaaatgg 60


Query: 61  cgtaaaattttggcaactaaaattcaaccaaaagtaaccgaagctatcttatcagtctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cgtaaaattttggcaactaaaattcaaccaaaagtaaccgaagctatcttatcagtctat 120


Query: 121 ggtaatcatatacttaatagttggggtggaaattatcgtaaagctataaatcaactattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggtaatcatatacttaatagttggggtggaaattatcgtaaagctataaatcaactattt 180


Query: 181 gatatctatacaaaatc 197
           |||||||||||||||||
Sbjct: 181 gatatctatacaaaatc 197

 Score =  301 bits (152), Expect(2) = 0.0
 Identities = 152/152 (100%)
 Strand = Plus / Plus


Query: 309 taatgaaaaaggacaattatcaatggatcaaaaaagtttaattttatcatcaattggtag 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 taatgaaaaaggacaattatcaatggatcaaaaaagtttaattttatcatcaattggtag 368


Query: 369 tgatattttatttgaatcaccaaatactttaaatcaattaaaatctttacaaactgatat 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tgatattttatttgaatcaccaaatactttaaatcaattaaaatctttacaaactgatat 428


Query: 429 aaaattaccaacaatttcaaataatgatgaag 460
           ||||||||||||||||||||||||||||||||
Sbjct: 429 aaaattaccaacaatttcaaataatgatgaag 460

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 483,436,572
Number of extensions: 28942688
Number of successful extensions: 2348053
Number of sequences better than 10.0: 121
Length of query: 554
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 531
Effective length of database: 93,106,754,628
Effective search space: 49439686707468
Effective search space used: 49439686707468
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.21
Homology vs Protein 
Query= Contig-U06430-1 (Contig-U06430-1Q) /CSM_Contig/Contig-U06430-1Q.Seq.d
         (554 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116956_90(AC116956|pid:none) Dictyostelium discoideum chromoso...   284   9e-76
CR940353_161(CR940353|pid:none) Theileria annulata strain Ankara...    34   2.9
CP000962_826(CP000962|pid:none) Clostridium botulinum A3 str. Lo...    33   3.8
(Q05652) RecName: Full=Serine/threonine-protein kinase pelle;   ...    32   8.4
CP000728_794(CP000728|pid:none) Clostridium botulinum F str. Lan...    32   8.4

>AC116956_90(AC116956|pid:none) Dictyostelium discoideum chromosome
           2 map 1418423-1684967 strain AX4, complete sequence.
          Length = 530

 Score =  284 bits (727), Expect = 9e-76
 Identities = 143/168 (85%), Positives = 143/168 (85%)
 Frame = +1

Query: 1   WAHILVYEQTNSTLNNLWKWRKILATKIQPKVTEAILSVYGNHILNSWGGNYRKAINQLF 180
           WAHILVYEQTNSTLNNLWKWRKILATKIQPKVTEAILSVYGNHILNSWGGNYRKAINQLF
Sbjct: 351 WAHILVYEQTNSTLNNLWKWRKILATKIQPKVTEAILSVYGNHILNSWGGNYRKAINQLF 410

Query: 181 DIYTKSLEFQTFNKQLSLNNLFNKFINEDXXXXXXXXXXXXXTNEKGQLSMDQKXXXXXX 360
           DIYTKSLEFQTFNKQLSLNNLFNKFINED             TNEKGQLSMDQK
Sbjct: 411 DIYTKSLEFQTFNKQLSLNNLFNKFINEDQYQQPQQPQQPQQTNEKGQLSMDQKSLILSS 470

Query: 361 XXXXXXFESPNTLNQLKSLQTDIKLPTISNNDEENFKNNILPSFTNLS 504
                 FESPNTLNQLKSLQTDIKLPTISNNDEENFKNNILPSFTNLS
Sbjct: 471 IGSDILFESPNTLNQLKSLQTDIKLPTISNNDEENFKNNILPSFTNLS 518

Lambda     K      H
   0.314    0.130    0.380

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 639,621,378
Number of extensions: 10459068
Number of successful extensions: 22539
Number of sequences better than 10.0: 5
Number of HSP's gapped: 22535
Number of HSP's successfully gapped: 5
Length of query: 184
Length of database: 1,040,966,779
Length adjustment: 121
Effective length of query: 63
Effective length of database: 653,248,294
Effective search space: 41154642522
Effective search space used: 41154642522
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.75  gvh: 0.33  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.10
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for Contig-U06430-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0