| Contig-U06426-1 |
| Contig ID |
Contig-U06426-1 |
| Contig update |
2002. 9.13 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
431 |
| Chromosome number (1..6, M) |
5 |
| Chromosome length |
5062330 |
| Start point |
3674138 |
| End point |
3674569 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
2 |
| Number of EST |
2 |
| Link to clone list |
U06426 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11. 8 |
| Homology vs DNA |
|
| protein update |
2009. 6.21 |
| Homology vs Protein |
Query= Contig-U06426-1 (Contig-U06426-1Q) /CSM_Contig/Contig-U06426-1Q.Seq.d
(431 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(A7HM34) RecName: Full=50S ribosomal protein L30; &CP000771_109... 51 1e-05
(Q6AP52) RecName: Full=50S ribosomal protein L30; &CR522870_114... 50 2e-05
(Q1AU47) RecName: Full=50S ribosomal protein L30; &CP000386_210... 50 2e-05
(B1I1L7) RecName: Full=50S ribosomal protein L30; 49 4e-05
(B2A4F7) RecName: Full=50S ribosomal protein L30; &CP001034_212... 49 4e-05
(Q3A6M9) RecName: Full=50S ribosomal protein L30; &CP000142_793... 49 7e-05
CP001083_3604(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 48 9e-05
(Q0SQG2) RecName: Full=50S ribosomal protein L30; &(Q0TMR4) Rec... 48 9e-05
(A1AVL8) RecName: Full=50S ribosomal protein L30; &CP000488_171... 48 9e-05
AE016827_2030(AE016827|pid:none) Mannheimia succiniciproducens M... 48 9e-05
(A6LLN1) RecName: Full=50S ribosomal protein L30; &CP000716_950... 47 2e-04
CP000930_1348(CP000930|pid:none) Heliobacterium modesticaldum Ic... 47 2e-04
(Q4FUD8) RecName: Full=50S ribosomal protein L30; &CP000082_507... 47 3e-04
(A7NR45) RecName: Full=50S ribosomal protein L30; &CP000804_390... 46 4e-04
(A5USH1) RecName: Full=50S ribosomal protein L30; &CP000686_113... 46 5e-04
(A5N4R5) RecName: Full=50S ribosomal protein L30; &AP009049_201... 46 5e-04
(Q0I144) RecName: Full=50S ribosomal protein L30; 45 6e-04
(Q5L3S1) RecName: Full=50S ribosomal protein L30; &BA000043_124... 45 6e-04
CP001390_3570(CP001390|pid:none) Geobacter sp. FRC-32, complete ... 45 6e-04
(B0UX32) RecName: Full=50S ribosomal protein L30; &CP000947_193... 45 6e-04
(Q1QDG8) RecName: Full=50S ribosomal protein L30; &CP000323_501... 45 6e-04
CP001620_1714(CP001620|pid:none) Corynebacterium kroppenstedtii ... 45 6e-04
(Q67JW1) RecName: Full=50S ribosomal protein L30; &AP006840_305... 45 6e-04
(Q605D0) RecName: Full=50S ribosomal protein L30; &AE017282_223... 45 8e-04
(Q488Z5) RecName: Full=50S ribosomal protein L30; &CP000083_587... 45 8e-04
CP001124_939(CP001124|pid:none) Geobacter bemidjiensis Bem, comp... 45 8e-04
(A1RED2) RecName: Full=50S ribosomal protein L30; &(A3DA54) Rec... 45 8e-04
(A5WCK8) RecName: Full=50S ribosomal protein L30; &CP000713_439... 45 0.001
FP236842_3356(FP236842|pid:none) Erwinia pyrifoliae strain Ep1/9... 45 0.001
(Q6NJ84) RecName: Full=50S ribosomal protein L30; &BX248355_144... 45 0.001
(P02431) RecName: Full=50S ribosomal protein L30; 45 0.001
R5BS3F(A02827)ribosomal protein L30 - Bacillus stearothermophilus 45 0.001
(Q7MYG9) RecName: Full=50S ribosomal protein L30; &BX571874_249... 45 0.001
(A1T0C4) RecName: Full=50S ribosomal protein L30; &CP000510_331... 45 0.001
CU468135_3145(CU468135|pid:none) Erwinia tasmaniensis strain ET1... 44 0.001
(A0LRN8) RecName: Full=50S ribosomal protein L30; &CP000481_322... 44 0.001
(Q8FS51) RecName: Full=50S ribosomal protein L30; &BA000035_553... 44 0.002
CP001392_386(CP001392|pid:none) Diaphorobacter sp. TPSY, complet... 44 0.002
CP001277_1663(CP001277|pid:none) Candidatus Hamiltonella defensa... 44 0.002
(A5V5Y4) RecName: Full=50S ribosomal protein L30; &CP000699_132... 44 0.002
(Q749A5) RecName: Full=50S ribosomal protein L30; &AE017180_282... 44 0.002
(A4QBL5) RecName: Full=50S ribosomal protein L30; &AP009044_651... 44 0.002
(Q9X1J1) RecName: Full=50S ribosomal protein L30; &AE000512_145... 44 0.002
(Q8NSX3) RecName: Full=50S ribosomal protein L30; &BA000036_542... 44 0.002
(Q31IW4) RecName: Full=50S ribosomal protein L30; 44 0.002
(P46184) RecName: Full=50S ribosomal protein L30; &D16555_2(D16... 44 0.002
CP001321_1299(CP001321|pid:none) Haemophilus parasuis SH0165, co... 44 0.002
(A5CXM2) RecName: Full=50S ribosomal protein L30; &AP009247_178... 44 0.002
(A8F4S9) RecName: Full=50S ribosomal protein L30; &CP000812_590... 44 0.002
CP000109_312(CP000109|pid:none) Thiomicrospira crunogena XCL-2, ... 44 0.002
(A3Q9A0) RecName: Full=50S ribosomal protein L30; &CP000606_175... 43 0.003
(A1KB09) RecName: Full=50S ribosomal protein L30; 43 0.003
(A8GKH9) RecName: Full=50S ribosomal protein L30; &CP000826_450... 43 0.003
(Q0I087) RecName: Full=50S ribosomal protein L30; &CP000444_212... 43 0.003
(A1JS10) RecName: Full=50S ribosomal protein L30; &(A7FNL6) Rec... 43 0.003
CP001339_2281(CP001339|pid:none) Thioalkalivibrio sp. HL-EbGR7, ... 43 0.003
(A5IMA1) RecName: Full=50S ribosomal protein L30; &CP000702_129... 43 0.003
(A5D5H3) RecName: Full=50S ribosomal protein L30; &AP009389_338... 43 0.003
(A6LPS9) RecName: Full=50S ribosomal protein L30; &CP000721_169... 43 0.004
(Q089N6) RecName: Full=50S ribosomal protein L30; &CP000447_166... 43 0.004
(A0KRP2) RecName: Full=50S ribosomal protein L30; &(Q0HNR9) Rec... 43 0.004
AP009493_2816(AP009493|pid:none) Streptomyces griseus subsp. gri... 43 0.004
CP001337_2913(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 43 0.004
CU207366_2784(CU207366|pid:none) Gramella forsetii KT0803 comple... 42 0.005
(B7J485) RecName: Full=50S ribosomal protein L30; &CP001132_507... 42 0.005
(A5EXA0) RecName: Full=50S ribosomal protein L30; &CP000513_119... 42 0.005
FM954972_2646(FM954972|pid:none) Vibrio splendidus LGP32 chromos... 42 0.005
(P46789) RecName: Full=50S ribosomal protein L30; &AL939121_67(... 42 0.005
(A4XZ72) RecName: Full=50S ribosomal protein L30; &CP000680_386... 42 0.005
(A9WH84) RecName: Full=50S ribosomal protein L30; &CP000909_233... 42 0.005
(A0M580) RecName: Full=50S ribosomal protein L30; 42 0.005
(A4IJK6) RecName: Full=50S ribosomal protein L30; &CP000557_123... 42 0.005
(Q7VTB3) RecName: Full=50S ribosomal protein L30; &(Q7W2D7) Rec... 42 0.007
(A6TEV4) RecName: Full=50S ribosomal protein L30; &(A7MPG8) Rec... 42 0.007
(A1TJT5) RecName: Full=50S ribosomal protein L30; &CP000512_605... 42 0.007
(B2FQK2) RecName: Full=50S ribosomal protein L30; &AM743169_875... 42 0.007
(Q12SU1) RecName: Full=50S ribosomal protein L30; &CP000302_188... 42 0.007
(A3N375) RecName: Full=50S ribosomal protein L30; &CP000569_175... 42 0.007
(B2V7J5) RecName: Full=50S ribosomal protein L30; &CP001080_266... 42 0.009
(B8FER7) RecName: Full=50S ribosomal protein L30; &CP001322_188... 42 0.009
(A4WFB0) RecName: Full=50S ribosomal protein L30; &CP000653_370... 42 0.009
CP000961_4621(CP000961|pid:none) Shewanella woodyi ATCC 51908, c... 42 0.009
(Q3SLN1) RecName: Full=50S ribosomal protein L30; &CP000116_423... 42 0.009
(Q47J85) RecName: Full=50S ribosomal protein L30; &CP000089_337... 42 0.009
(A4VHP8) RecName: Full=50S ribosomal protein L30; &CP000304_791... 42 0.009
(Q1IFU8) RecName: Full=50S ribosomal protein L30; &CT573326_457... 41 0.011
(Q04PV6) RecName: Full=50S ribosomal protein L30; &(Q055C6) Rec... 41 0.011
(Q6A6P4) RecName: Full=50S ribosomal protein L30; &AE017283_180... 41 0.011
(Q2RFR5) RecName: Full=50S ribosomal protein L30; &CP000232_238... 41 0.011
(A8ZV75) RecName: Full=50S ribosomal protein L30; 41 0.015
CP000805_204(CP000805|pid:none) Treponema pallidum subsp. pallid... 41 0.015
CP001111_774(CP001111|pid:none) Stenotrophomonas maltophilia R55... 41 0.015
(B2SQS8) RecName: Full=50S ribosomal protein L30; &(Q2P003) Rec... 41 0.015
(A1ALV9) RecName: Full=50S ribosomal protein L30; &CP000482_688... 41 0.015
AY658329_1(AY658329|pid:none) Synthetic construct Peudomonas aer... 41 0.015
(A0Q4K1) RecName: Full=50S ribosomal protein L30; &(A4IZR6) Rec... 40 0.019
CP000922_123(CP000922|pid:none) Anoxybacillus flavithermus WK1, ... 40 0.019
(A4FPK7) RecName: Full=50S ribosomal protein L30; &AM420293_662... 40 0.019
CP000934_702(CP000934|pid:none) Cellvibrio japonicus Ueda107, co... 40 0.019
(Q0RRQ3) RecName: Full=50S ribosomal protein L30; &CT573213_106... 40 0.019
AY774287_1(AY774287|pid:none) Synthetic construct Francisella tu... 40 0.019
(A1SNK0) RecName: Full=50S ribosomal protein L30; &CP000509_383... 40 0.019
(A6TWG4) RecName: Full=50S ribosomal protein L30; &CP000724_428... 40 0.025
(Q21M40) RecName: Full=50S ribosomal protein L30; &CP000282_975... 40 0.025
(B0TLZ4) RecName: Full=50S ribosomal protein L30; &CP000931_408... 40 0.025
(Q5E896) RecName: Full=50S ribosomal protein L30; &CP000020_248... 40 0.025
(B1JAJ4) RecName: Full=50S ribosomal protein L30; &CP000949_470... 40 0.025
AY088696_1(AY088696|pid:none) Arabidopsis thaliana clone 92179 m... 40 0.033
(Q21QP1) RecName: Full=50S ribosomal protein L30; &CP000267_415... 40 0.033
CP001103_950(CP001103|pid:none) Alteromonas macleodii 'Deep ecot... 40 0.033
AM920437_1321(AM920437|pid:none) Penicillium chrysogenum Wiscons... 40 0.033
(A6LEH3) RecName: Full=50S ribosomal protein L30; &CP000140_229... 40 0.033
CP001154_270(CP001154|pid:none) Laribacter hongkongensis HLHK9, ... 40 0.033
CP001089_1346(CP001089|pid:none) Geobacter lovleyi SZ, complete ... 40 0.033
(A1KRJ1) RecName: Full=50S ribosomal protein L30; &(A9M3U8) Rec... 40 0.033
(Q7NQH0) RecName: Full=50S ribosomal protein L30; &AE016825_416... 40 0.033
(B0RU64) RecName: Full=50S ribosomal protein L30; &(Q4URF7) Rec... 40 0.033
(A6KYH7) RecName: Full=50S ribosomal protein L30; &CP000139_761... 39 0.043
CU459003_3805(CU459003|pid:none) Magnetospirillum gryphiswaldens... 39 0.043
(A4J129) RecName: Full=50S ribosomal protein L30; &CP000612_230... 39 0.043
CP000884_1039(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 39 0.043
(A9B429) RecName: Full=50S ribosomal protein L30; &CP000875_491... 39 0.043
CP001348_766(CP001348|pid:none) Clostridium cellulolyticum H10, ... 39 0.057
(A3M966) RecName: Full=50S ribosomal protein L30; &(B7GW20) Rec... 39 0.057
(A9IHS8) RecName: Full=50S ribosomal protein L30; &AM902716_495... 39 0.057
(A8EZJ8) RecName: Full=50S ribosomal protein L30; &CP000409_828... 39 0.074
(Q9Z9J6) RecName: Full=50S ribosomal protein L30; &AB017508_27(... 39 0.074
AM270079_60(AM270079|pid:none) Aspergillus niger contig An04c018... 38 0.096
AE008923_981(AE008923|pid:none) Xanthomonas axonopodis pv. citri... 38 0.096
CP001068_3234(CP001068|pid:none) Ralstonia pickettii 12J chromos... 38 0.096
(Q15X55) RecName: Full=50S ribosomal protein L30; &CP000388_100... 38 0.096
(A0K3P3) RecName: Full=50S ribosomal protein L30; &(A4JAQ8) Rec... 38 0.096
CP000868_267(CP000868|pid:none) Burkholderia multivorans ATCC 17... 38 0.096
CP001104_307(CP001104|pid:none) Eubacterium eligens ATCC 27750, ... 38 0.13
(A5IV16) RecName: Full=50S ribosomal protein L30; &(A6QJ74) Rec... 38 0.13
(Q13TI8) RecName: Full=50S ribosomal protein L30; &CP000270_406... 38 0.13
(A0R8J8) RecName: Full=50S ribosomal protein L30; &(B7HJ66) Rec... 38 0.13
(A1WVA4) RecName: Full=50S ribosomal protein L30; &CP000544_821... 38 0.13
CU638743_784(CU638743|pid:none) Podospora anserina genomic DNA c... 38 0.13
(Q5QXW3) RecName: Full=50S ribosomal protein L30; &AE017340_188... 38 0.13
(A7GK38) RecName: Full=50S ribosomal protein L30; &CP000764_120... 37 0.16
AP009484_213(AP009484|pid:none) Macrococcus caseolyticus JCSC540... 37 0.16
(Q82X74) RecName: Full=50S ribosomal protein L30; &AL954747_419... 37 0.16
(Q5WLP4) RecName: Full=50S ribosomal protein L30; &AP006627_168... 37 0.16
AE016819_683(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 37 0.16
(A6GZ81) RecName: Full=50S ribosomal protein L30; &AM398681_128... 37 0.16
(Q0ABF7) RecName: Full=50S ribosomal protein L30; &CP000453_471... 37 0.16
(A2RNN5) RecName: Full=50S ribosomal protein L30; &(Q02W43) Rec... 37 0.16
AE008922_904(AE008922|pid:none) Xanthomonas campestris pv. campe... 37 0.21
(Q4UMR1) RecName: Full=50S ribosomal protein L30; 37 0.21
(Q3Z963) RecName: Full=50S ribosomal protein L30; &CP000027_481... 37 0.21
AP008955_239(AP008955|pid:none) Brevibacillus brevis NBRC 100599... 37 0.21
(Q0AUJ8) RecName: Full=50S ribosomal protein L30; &CP000448_224... 37 0.21
(A8GPD2) RecName: Full=50S ribosomal protein L30; &CP000847_920... 37 0.21
CP001338_441(CP001338|pid:none) Candidatus Methanosphaerula palu... 37 0.21
EU686618_1(EU686618|pid:none) Uncultured marine group II euryarc... 37 0.28
CR761990_1(CR761990|pid:none) Xenopus tropicalis finished cDNA, ... 37 0.28
(B7IT37) RecName: Full=50S ribosomal protein L30; &CP001186_122... 37 0.28
AY552545_94(AY552545|pid:none) Uncultured marine gamma proteobac... 37 0.28
(Q3ZZQ6) RecName: Full=50S ribosomal protein L30; &AJ965256_378... 37 0.28
(A5FRW2) RecName: Full=50S ribosomal protein L30; &CP000688_462... 37 0.28
(Q1LTC0) RecName: Full=50S ribosomal protein L30; &CP000238_315... 36 0.37
(A9BG00) RecName: Full=50S ribosomal protein L30; &CP000879_747... 36 0.37
(Q12G85) RecName: Full=50S ribosomal protein L30; &CP000316_490... 36 0.37
(Q2L263) RecName: Full=50S ribosomal protein L30; &AM167904_52(... 36 0.37
CP000777_1852(CP000777|pid:none) Leptospira biflexa serovar Pato... 36 0.37
(Q5HM17) RecName: Full=50S ribosomal protein L30; &CP000029_177... 36 0.37
(Q1GPB7) RecName: Full=50S ribosomal protein L30; &CP000356_277... 36 0.48
CP001114_2069(CP001114|pid:none) Deinococcus deserti VCD115, com... 36 0.48
(Q2LQB9) RecName: Full=50S ribosomal protein L30; &CP000252_320... 36 0.48
EU686610_32(EU686610|pid:none) Uncultured marine group II euryar... 36 0.48
CP000725_1895(CP000725|pid:none) Streptococcus gordonii str. Cha... 36 0.48
CP000613_707(CP000613|pid:none) Rhodospirillum centenum SW, comp... 36 0.48
EU686639_23(EU686639|pid:none) Uncultured marine group II euryar... 36 0.48
(A3CK82) RecName: Full=50S ribosomal protein L30; &(A8AZK7) Rec... 36 0.48
(Q1GK11) RecName: Full=50S ribosomal protein L30; &CP000377_272... 35 0.63
(Q7VQD0) RecName: Full=50S ribosomal protein L30; &BX248583_196... 35 0.63
(Q28UT6) RecName: Full=50S ribosomal protein L30; &CP000264_609... 35 0.63
(B2IS58) RecName: Full=50S ribosomal protein L30; &CP000936_325... 35 0.82
CP000301_3120(CP000301|pid:none) Rhodopseudomonas palustris BisB... 35 0.82
(A4SUX9) RecName: Full=50S ribosomal protein L30; &CP000655_71(... 35 1.1
BC095668_1(BC095668|pid:none) Danio rerio zgc:112089, mRNA (cDNA... 35 1.1
(A7IPQ2) RecName: Full=50S ribosomal protein L30; &CP000781_473... 35 1.1
(Q2NFX8) RecName: Full=50S ribosomal protein L30P; &CP000102_85... 35 1.1
(A8MLF8) RecName: Full=50S ribosomal protein L30; &CP000853_502... 35 1.1
(B2I8I7) RecName: Full=50S ribosomal protein L30; &(Q87E64) Rec... 35 1.1
CU928167_145(CU928167|pid:none) Kluyveromyces thermotolerans str... 35 1.1
(A9KD13) RecName: Full=50S ribosomal protein L30; &(A9NAY8) Rec... 34 1.4
(O26132) RecName: Full=50S ribosomal protein L30P; &AE000666_24... 34 1.4
EU974871_1(EU974871|pid:none) Zea mays clone 460220 structural c... 34 1.4
(Q11HS0) RecName: Full=50S ribosomal protein L30; &CP000390_165... 34 1.4
(A9FGF3) RecName: Full=50S ribosomal protein L30; &AM746676_795... 34 1.4
EU967806_1(EU967806|pid:none) Zea mays clone 306257 structural c... 34 1.4
BT085493_1(BT085493|pid:none) Zea mays full-length cDNA clone ZM... 34 1.4
(Q5Z1Q4) RecName: Full=50S ribosomal protein L30; &AP006618_799... 34 1.4
EU977048_1(EU977048|pid:none) Zea mays clone 997267 structural c... 34 1.4
(Q3K3V1) RecName: Full=50S ribosomal protein L30; &(Q8E2B6) Rec... 34 1.8
EU686616_36(EU686616|pid:none) Uncultured marine group II euryar... 34 1.8
(Q057C2) RecName: Full=50S ribosomal protein L30; &AY744382_12(... 34 1.8
AC069472_9(AC069472|pid:none) Arabidopsis thaliana chromosome 3 ... 34 1.8
AP003506_3(AP003506|pid:none) Oryza sativa Japonica Group genomi... 34 1.8
(A5UL67) RecName: Full=50S ribosomal protein L30P; &CP000678_74... 34 1.8
(Q16AC6) RecName: Full=50S ribosomal protein L30; &CP000362_133... 34 1.8
CP000250_3200(CP000250|pid:none) Rhodopseudomonas palustris HaA2... 33 2.4
(A6U877) RecName: Full=50S ribosomal protein L30; &(Q92QF2) Rec... 33 2.4
(P68995) RecName: Full=50S ribosomal protein L30; &AE007869_188... 33 2.4
CP000359_1835(CP000359|pid:none) Deinococcus geothermalis DSM 11... 33 2.4
CP001615_1606(CP001615|pid:none) Exiguobacterium sp. AT1b, compl... 33 2.4
(Q6AD12) RecName: Full=50S ribosomal protein L30; &AE016822_162... 33 2.4
(B5ZYV3) RecName: Full=50S ribosomal protein L30; &(Q1MIC3) Rec... 33 2.4
(B1HMW2) RecName: Full=50S ribosomal protein L30; 33 2.4
CP001358_666(CP001358|pid:none) Desulfovibrio desulfuricans subs... 33 3.1
CP000859_726(CP000859|pid:none) Desulfococcus oleovorans Hxd3, c... 33 3.1
(A3PGM9) RecName: Full=50S ribosomal protein L30; &(A4WVJ0) Rec... 33 3.1
(P20084) RecName: Full=54S ribosomal protein L33, mitochondrial;... 33 3.1
(A8IAP5) RecName: Full=50S ribosomal protein L30; &AP009384_253... 33 3.1
(Q2N9C9) RecName: Full=50S ribosomal protein L30; &CP000157_162... 33 3.1
AP008957_1871(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 33 3.1
(Q2K9J8) RecName: Full=50S ribosomal protein L30; &CP000133_166... 33 3.1
BA000040_5612(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 33 4.1
(Q0BUN2) RecName: Full=50S ribosomal protein L30; &CP000394_572... 33 4.1
AY458644_47(AY458644|pid:none) Uncultured marine bacterium 562 c... 33 4.1
AP006535_5(AP006535|pid:none) Lotus japonicus genomic DNA, chrom... 33 4.1
(Q71WG4) RecName: Full=50S ribosomal protein L30; &(Q7ANU8) Rec... 33 4.1
(Q03IG9) RecName: Full=50S ribosomal protein L30; &(Q5LXS9) Rec... 32 5.3
(Q68W96) RecName: Full=50S ribosomal protein L30; &AE017197_606... 32 5.3
CP000855_89(CP000855|pid:none) Thermococcus onnurineus NA1, comp... 32 5.3
(O28375) RecName: Full=50S ribosomal protein L30P; &AE000782_18... 32 5.3
(Q9RSL0) RecName: Full=50S ribosomal protein L30; &AE000513_207... 32 5.3
(A8F2C9) RecName: Full=50S ribosomal protein L30; &CP000683_716... 32 5.3
(A0JZ67) RecName: Full=50S ribosomal protein L30; &CP000454_293... 32 6.9
CP001101_2193(CP001101|pid:none) Chlorobium phaeobacteroides BS1... 32 6.9
CP000941_467(CP000941|pid:none) Xylella fastidiosa M12, complete... 32 6.9
CP001129_70(CP001129|pid:none) Streptococcus equi subsp. zooepid... 32 6.9
CP001097_2127(CP001097|pid:none) Chlorobium limicola DSM 245, co... 32 6.9
(Q6G2Y3) RecName: Full=50S ribosomal protein L30; &BX897699_100... 32 6.9
(Q01WB0) RecName: Full=50S ribosomal protein L30; &CP000473_503... 32 6.9
(Q92GY4) RecName: Full=50S ribosomal protein L30; &AE006914_988... 32 6.9
(A1VE98) RecName: Full=50S ribosomal protein L30; &(Q72CG2) Rec... 32 6.9
CU928175_617(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 32 6.9
(B4U762) RecName: Full=50S ribosomal protein L30; &CP001130_281... 32 6.9
(A7I5R0) RecName: Full=50S ribosomal protein L30P; &CP000780_54... 32 6.9
(A2RC32) RecName: Full=50S ribosomal protein L30; &(B5XJ54) Rec... 32 9.0
CP001341_2632(CP001341|pid:none) Arthrobacter chlorophenolicus A... 32 9.0
(Q9D7N6) RecName: Full=39S ribosomal protein L30, mitochondrial;... 32 9.0
BC004614_1(BC004614|pid:none) Mus musculus mitochondrial ribosom... 32 9.0
>(A7HM34) RecName: Full=50S ribosomal protein L30;
&CP000771_1094(CP000771|pid:none)
Length = 61
Score = 50.8 bits (120), Expect = 1e-05
Identities = 25/56 (44%), Positives = 39/56 (69%)
Frame = +3
Query: 186 IKITLIKSGQRGVDEHIKGTMNALGLKKMHHYMFHKNTPEIRGMIHKLRQYVKVEE 353
+KITL++S G K T+ LGL++MH+ + ++TP+IRGM+ K++ VKVEE
Sbjct: 4 LKITLVRS-PIGYKYDQKDTVKRLGLRRMHYTVIKEDTPQIRGMVEKVKHLVKVEE 58
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 639,134,089
Number of extensions: 12345259
Number of successful extensions: 28840
Number of sequences better than 10.0: 246
Number of HSP's gapped: 28837
Number of HSP's successfully gapped: 246
Length of query: 143
Length of database: 1,040,966,779
Length adjustment: 106
Effective length of query: 37
Effective length of database: 701,312,569
Effective search space: 25948565053
Effective search space used: 25948565053
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)
|
| PSORT |
|
| VS (DIR, S) |
2 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |