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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U06424-1
Contig ID Contig-U06424-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U06424-1 (Contig-U06424-1Q) /CSM_Contig/Contig-U06424-1Q.Seq.d
CCGATGAAAAATTTAGAACATTTTTAAAAAGAAGAAAACGTGAAAGACAT
TTACAAGAAGAAAAGGAATTTCTTGCACCAAAAACAGTTTTATCGACTAA
AAGATCAGAAAGCCAACGTCCAACCTGGGGTGTTACATATGATGCATCAG
AAGATTTTGATCCATCCGATCAATTTCATTTCACTCCACTTCCAACTGAT
CAACCAATTTTACCAGCATTCAGAGCACCAAAAACTGTTGAAAATTTAAT
AATTAAATATGAAGACCCTTTCAAAGATCCATCAAAAACAAATGCTAATT
ATTTCCCATTTTTCAGATTTACTGAACCAAGAGGATATACTGTTGAATCT
TTCTTAAAACAAATAGGTAGAGGATGTGATCAACATGTAGAATTATTTGA
AAAATGGGAAGATCTTATGGAAACATCTTCACGTAAATTAAAAGATTTAC
AAGTTCCAGTTTCAAATAGAAAATGGATTCTTCATTGGGTTGAGGAATTT
AAACAAGGTAGAGATCCAGTTTTAATTTCAAAATCAAAATCTAGATCTAA
AT
Gap no gap
Contig length 552
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 6498554
End point 6498002
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U06424
List of clone(s) 

est1=VSC194Z,1,553
Translated Amino Acid sequence 
DEKFRTFLKRRKRERHLQEEKEFLAPKTVLSTKRSESQRPTWGVTYDASEDFDPSDQFHF
TPLPTDQPILPAFRAPKTVENLIIKYEDPFKDPSKTNANYFPFFRFTEPRGYTVESFLKQ
IGRGCDQHVELFEKWEDLMETSSRKLKDLQVPVSNRKWILHWVEEFKQGRDPVLISKSKS
RSK
Translated Amino Acid sequence (All Frames) 
Frame A:
pmknlehf*keenvkdiykkkrnflhqkqfyrlkdqkanvqpgvlhmmhqkilihpinfi
slhfqlinqfyqhsehqkllki**lnmktlskihqkqmliishfsdllnqedillnls*n
k*vedvinm*nylkngkilwkhlhvn*kiykfqfqiengffiglrnlnkveiqf*fqnqn
ldln


Frame B:
r*ki*nifkkkkt*ktftrrkgisctknsfid*kirkptsnlgcyi*cirrf*sirsisf
hstsn*stnftsiqstknc*kfnn*i*rpfqrsiknkc*lfpifqiy*tkriyc*iflkt
nr*rm*stcrii*kmgrsygnift*ikrftsssfk*kmdsslg*gi*tr*rssfnfkiki
*i*


Frame C:
DEKFRTFLKRRKRERHLQEEKEFLAPKTVLSTKRSESQRPTWGVTYDASEDFDPSDQFHF
TPLPTDQPILPAFRAPKTVENLIIKYEDPFKDPSKTNANYFPFFRFTEPRGYTVESFLKQ
IGRGCDQHVELFEKWEDLMETSSRKLKDLQVPVSNRKWILHWVEEFKQGRDPVLISKSKS
RSK
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06424-1 (Contig-U06424-1Q)
/CSM_Contig/Contig-U06424-1Q.Seq.d
         (552 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06424-1 (Contig-U06424-1Q) /CSM_Contig/Conti...   967  0.0
Contig-U08837-1 (Contig-U08837-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U11339-1 (Contig-U11339-1Q) /CSM_Contig/Conti...    36  0.038
Contig-U14149-1 (Contig-U14149-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U13399-1 (Contig-U13399-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U12551-1 (Contig-U12551-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U11765-1 (Contig-U11765-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U11007-1 (Contig-U11007-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U10542-1 (Contig-U10542-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U09821-1 (Contig-U09821-1Q) /CSM_Contig/Conti...    34  0.15

>Contig-U06424-1 (Contig-U06424-1Q) /CSM_Contig/Contig-U06424-1Q.Seq.d
          Length = 552

 Score =  967 bits (488), Expect = 0.0
 Identities = 488/488 (100%)
 Strand = Plus / Plus

                                                                       
Query: 65  ggaatttcttgcaccaaaaacagttttatcgactaaaagatcagaaagccaacgtccaac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  ggaatttcttgcaccaaaaacagttttatcgactaaaagatcagaaagccaacgtccaac 124

                                                                       
Query: 125 ctggggtgttacatatgatgcatcagaagattttgatccatccgatcaatttcatttcac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ctggggtgttacatatgatgcatcagaagattttgatccatccgatcaatttcatttcac 184

                                                                       
Query: 185 tccacttccaactgatcaaccaattttaccagcattcagagcaccaaaaactgttgaaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 tccacttccaactgatcaaccaattttaccagcattcagagcaccaaaaactgttgaaaa 244

                                                                       
Query: 245 tttaataattaaatatgaagaccctttcaaagatccatcaaaaacaaatgctaattattt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tttaataattaaatatgaagaccctttcaaagatccatcaaaaacaaatgctaattattt 304

                                                                       
Query: 305 cccatttttcagatttactgaaccaagaggatatactgttgaatctttcttaaaacaaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cccatttttcagatttactgaaccaagaggatatactgttgaatctttcttaaaacaaat 364

                                                                       
Query: 365 aggtagaggatgtgatcaacatgtagaattatttgaaaaatgggaagatcttatggaaac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aggtagaggatgtgatcaacatgtagaattatttgaaaaatgggaagatcttatggaaac 424

                                                                       
Query: 425 atcttcacgtaaattaaaagatttacaagttccagtttcaaatagaaaatggattcttca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atcttcacgtaaattaaaagatttacaagttccagtttcaaatagaaaatggattcttca 484

                                                                       
Query: 485 ttgggttgaggaatttaaacaaggtagagatccagttttaatttcaaaatcaaaatctag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ttgggttgaggaatttaaacaaggtagagatccagttttaatttcaaaatcaaaatctag 544

                   
Query: 545 atctaaat 552
           ||||||||
Sbjct: 545 atctaaat 552


>Contig-U08837-1 (Contig-U08837-1Q) /CSM_Contig/Contig-U08837-1Q.Seq.d
          Length = 968

 Score = 38.2 bits (19), Expect = 0.010
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 247 taataattaaatatgaaga 265
           |||||||||||||||||||
Sbjct: 173 taataattaaatatgaaga 191


>Contig-U11339-1 (Contig-U11339-1Q) /CSM_Contig/Contig-U11339-1Q.Seq.d
          Length = 2489

 Score = 36.2 bits (18), Expect = 0.038
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 241  aaaatttaataattaaatatga 262
            ||||||||| ||||||||||||
Sbjct: 1658 aaaatttaacaattaaatatga 1637


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8222
Number of Sequences: 6905
Number of extensions: 8222
Number of successful extensions: 1072
Number of sequences better than 10.0: 355
length of query: 552
length of database: 5,674,871
effective HSP length: 16
effective length of query: 536
effective length of database: 5,564,391
effective search space: 2982513576
effective search space used: 2982513576
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11. 8
Homology vs DNA 
Query= Contig-U06424-1 (Contig-U06424-1Q) /CSM_Contig/Contig-U06424-1Q.Seq.d
         (552 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU262387) Dictyostelium discoideum vegetative cDNA clone:VS...   954   0.0    1
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...   515   0.0    2
(AC114258) Dictyostelium discoideum chromosome 2 map complem...    32   0.24   5
(BH395822) AG-ND-131J16.TR ND-TAM Anopheles gambiae genomic ...    48   0.33   1
(BH371564) AG-ND-124L16.TR ND-TAM Anopheles gambiae genomic ...    48   0.33   1
(ET890863) CHO_OF024xg02f1.ab1 CHO_OF Nicotiana tabacum geno...    48   0.33   1
(AL148030) Anopheles gambiae GSS T7 end of clone 16H18 of No...    48   0.33   1
(AM451785) Vitis vinifera, whole genome shotgun sequence, co...    38   0.61   4
(EK230376) 1095460177271 Global-Ocean-Sampling_GS-31-01-01-1...    42   0.67   2
(AL928825) Zebrafish DNA sequence from clone CH211-284P13 in...    46   1.3    1
(DX525696) GH_MBb0021M13r GH_MBb Gossypium hirsutum genomic ...    46   1.3    1
(CL058179) CH216-87J24_Sp6.1 CH216 Xenopus (Silurana) tropic...    46   1.3    1
(EH643048) EST14156 LK04 Laupala kohalensis cDNA clone 10610...    46   1.3    1
(EH633893) EST5000 LK04 Laupala kohalensis cDNA clone 106102...    46   1.3    1
(EH633312) EST4419 LK04 Laupala kohalensis cDNA clone 106102...    46   1.3    1
(EH630171) EST1278 LK04 Laupala kohalensis cDNA clone 106102...    46   1.3    1
(AC155864) Bos taurus clone CH240-40L19, WORKING DRAFT SEQUE...    40   1.7    2
(DR400286) TKN056G05_628094 Taraxacum kok-saghyz root cDNA l...    40   1.8    2
(EC824409) SME00008865 esmbsro2 Sawyeria marylandensis cDNA,...    42   2.1    2
(AC154336) Mus musculus BAC clone RP23-252B13 from chromosom...    36   3.2    5
(AM469026) Vitis vinifera contig VV78X008936.5, whole genome...    38   4.7    2
(CP000882) Hemiselmis andersenii chromosome 2, complete sequ...    34   4.8    7
(AC150785) Medicago truncatula chromosome 8 clone mth2-170i1...    36   5.2    4
(CR854838) Zebrafish DNA sequence from clone CH211-130H14 in...    44   5.2    1
(BX001047) Zebrafish DNA sequence from clone CH211-288D18 in...    44   5.2    1
(AF061758) Gallus gallus poly(A) polymerase II mRNA, partial...    44   5.2    1
(AC132474) Mus musculus BAC clone RP23-114G13 from chromosom...    44   5.2    1
(AM477482) Vitis vinifera, whole genome shotgun sequence, co...    44   5.2    1
(AM435200) Vitis vinifera contig VV78X231747.3, whole genome...    44   5.2    1
(AC156264) Takifugu rubripes, *** SEQUENCING IN PROGRESS ***...    44   5.2    1
(AC153037) Bos taurus clone CH240-23J15, WORKING DRAFT SEQUE...    44   5.2    1
(CU075490) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.2    1
(AC223549) Bos taurus clone CH240-466K8, WORKING DRAFT SEQUE...    44   5.2    1
(AC221670) Bos taurus clone CH240-389J18, WORKING DRAFT SEQU...    44   5.2    1
(AC218283) Bos taurus clone CH240-288M4, WORKING DRAFT SEQUE...    44   5.2    1
(AC185790) Bos taurus clone RP42-252G24, WORKING DRAFT SEQUE...    44   5.2    1
(AC169140) Oryctolagus cuniculus clone LB1-265J1, WORKING DR...    44   5.2    1
(AC166603) Oryctolagus cuniculus clone LB1-122D17, WORKING D...    44   5.2    1
(AC164026) Bos taurus clone CH240-143L16, *** SEQUENCING IN ...    44   5.2    1
(ET837859) CHO_OF884xj10r1.ab1 CHO_OF Nicotiana tabacum geno...    44   5.2    1
(ED443026) AUAC-aae45h07.b1 Ascaris suum whole genome shotgu...    44   5.2    1
(ED440632) AUAC-aaa61d10.b1 Ascaris suum whole genome shotgu...    44   5.2    1
(ED439157) AUAC-aaq71g12.b1 Ascaris suum whole genome shotgu...    44   5.2    1
(ED439002) AUAC-aac22f02.b1 Ascaris suum whole genome shotgu...    44   5.2    1
(ED429417) AUAC-aaa26b12.b1 Ascaris suum whole genome shotgu...    44   5.2    1
(ED393487) AUAC-aal78d11.g1 Ascaris suum whole genome shotgu...    44   5.2    1
(ED384030) AUAC-aaj68d11.b1 Ascaris suum whole genome shotgu...    44   5.2    1
(ED377353) AUAC-aao07a06.g1 Ascaris suum whole genome shotgu...    44   5.2    1
(ED354270) AUAC-aat22b06.g1 Ascaris suum whole genome shotgu...    44   5.2    1
(ED342054) AUAC-aac59b10.b1 Ascaris suum whole genome shotgu...    44   5.2    1
(ED325237) AUAC-aaz11d08.b1 Ascaris suum whole genome shotgu...    44   5.2    1
(ED316735) AUAC-aas98h09.g1 Ascaris suum whole genome shotgu...    44   5.2    1
(ED308415) AUAC-aan14e06.b1 Ascaris suum whole genome shotgu...    44   5.2    1
(ED285062) AUAC-aau42f10.b1 Ascaris suum whole genome shotgu...    44   5.2    1
(ED283664) AUAC-aab48h10.g1 Ascaris suum whole genome shotgu...    44   5.2    1
(ED203519) AUAC-aae39a09.b1 Ascaris suum whole genome shotgu...    44   5.2    1
(ED191962) AUAC-aaa61c09.b1 Ascaris suum whole genome shotgu...    44   5.2    1
(ED174743) AUAC-aac06b11.b1 Ascaris suum whole genome shotgu...    44   5.2    1
(ED118140) AUAC-aau64e08.g1 Ascaris suum whole genome shotgu...    44   5.2    1
(ED064776) AUAC-aaa44f01.g1 Ascaris suum whole genome shotgu...    44   5.2    1
(ED047475) AUAC-aam06g06.b1 Ascaris suum whole genome shotgu...    44   5.2    1
(ED035670) AUAC-aaq46d04.b1 Ascaris suum whole genome shotgu...    44   5.2    1
(DU789667) APKH3242.b2 HF770_12-21-03 uncultured marine micr...    44   5.2    1
(CT529155) A BAC library has been constructed from cultivar ...    44   5.2    1
(CT287539) Sus scrofa genomic clone CH242-258K15, genomic su...    44   5.2    1
(CG419712) ZMMBBc0033E01r ZMMBBc (EcoRI) Zea mays subsp. may...    44   5.2    1
(CE776685) tigr-gss-dog-17000330635335 Dog Library Canis lup...    44   5.2    1
(CE633307) tigr-gss-dog-17000366727904 Dog Library Canis lup...    44   5.2    1
(DY935191) CHPX14173.b1_J16.ab1 CHP(XYZ) plains sunflower He...    44   5.2    1
(DY935184) CHPX14165.b1_J14.ab1 CHP(XYZ) plains sunflower He...    44   5.2    1
(DR426742) naw34c06.y1 Chicken eye (hatched). Unnormalized (...    44   5.2    1
(DR416202) gPGC_EST06044 Embryonic gonadal PGC cDNA Library ...    44   5.2    1
(DN830304) DT40subNB_17E5 DT40subNB Gallus gallus cDNA clone...    44   5.2    1
(CV692635) SJS_001_34.T7 SJS Schistosoma japonicum cDNA, mRN...    44   5.2    1
(CV672212) RE-3-SJ-Q_C05_RE-3-SJ-QC05-T7 Schistosoma japonic...    44   5.2    1
(CO772294) testis_EST03391 Testis cDNA Library Gallus gallus...    44   5.2    1
(AM067083) Gallus gallus EST, clone C0000473F06_T7.                44   5.2    1
(AL587452) Gallus gallus mRNA; expressed sequence tag ROS057...    44   5.2    1
(CK612356) LPSd_O12 LPS stimulated Chicken PBL Macrophage Ga...    44   5.2    1
(AI979891) pat.pk0006.a11 chicken activated T cell cDNA Gall...    44   5.2    1
(CF251635) hdm002_e04 LPS-activated macrophage cell line Gal...    44   5.2    1
(BU779119) SJEEUE11 SJE Schistosoma japonicum cDNA, mRNA seq...    44   5.2    1
(BU462123) 603775757F1 CSEQRBN19 Gallus gallus cDNA clone Ch...    44   5.2    1
(BU413213) 603156027F1 CSEQRBL05 Gallus gallus cDNA clone Ch...    44   5.2    1
(BU377636) 603590655F1 CSEQCHN74 Gallus gallus cDNA clone Ch...    44   5.2    1
(BU293793) 603605927F1 CSEQCHN55 Gallus gallus cDNA clone Ch...    44   5.2    1
(BU289950) 603608014F1 CSEQCHN55 Gallus gallus cDNA clone Ch...    44   5.2    1
(BU265469) 603820139F1 CSEQCHN52 Gallus gallus cDNA clone Ch...    44   5.2    1
(BU239850) 603322620F1 CSEQCHN33 Gallus gallus cDNA clone Ch...    44   5.2    1
(BU207294) 604158445F1 CSEQCHN03 Gallus gallus cDNA clone Ch...    44   5.2    1
(BE139833) EST00335 DT40subNB Gallus gallus cDNA clone 7A8, ...    44   5.2    1
(CP000099) Methanosarcina barkeri str. Fusaro, complete genome.    44   5.2    1
(GC525025) Sequence 121 from patent US 7410647.                    40   5.9    2
(DD104373) Antigenic Polypeptides.                                 40   5.9    2
(AX768535) Sequence 121 from Patent WO03011899.                    40   5.9    2
(AC147430) Medicago truncatula clone mth2-71e6, complete seq...    36   6.0    4
(AM285302) Spiroplasma citri GII3-3X chromosome, contig Cont...    42   6.2    4
(EI334702) GM_WBc0076A09.r GM_WBc Glycine max genomic clone ...    38   7.9    2
(EJ717678) 1092959432515 Global-Ocean-Sampling_GS-30-02-01-1...    30   7.9    3
(AC174455) Medicago truncatula clone mth2-92e7, WORKING DRAF...    36   8.2    4

>(AU262387) Dictyostelium discoideum vegetative cDNA clone:VSC194,
           3' end single read.
          Length = 553

 Score =  954 bits (481), Expect = 0.0
 Identities = 481/481 (100%)
 Strand = Plus / Plus


Query: 72  cttgcaccaaaaacagttttatcgactaaaagatcagaaagccaacgtccaacctggggt 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  cttgcaccaaaaacagttttatcgactaaaagatcagaaagccaacgtccaacctggggt 131


Query: 132 gttacatatgatgcatcagaagattttgatccatccgatcaatttcatttcactccactt 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 gttacatatgatgcatcagaagattttgatccatccgatcaatttcatttcactccactt 191


Query: 192 ccaactgatcaaccaattttaccagcattcagagcaccaaaaactgttgaaaatttaata 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ccaactgatcaaccaattttaccagcattcagagcaccaaaaactgttgaaaatttaata 251


Query: 252 attaaatatgaagaccctttcaaagatccatcaaaaacaaatgctaattatttcccattt 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 attaaatatgaagaccctttcaaagatccatcaaaaacaaatgctaattatttcccattt 311


Query: 312 ttcagatttactgaaccaagaggatatactgttgaatctttcttaaaacaaataggtaga 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ttcagatttactgaaccaagaggatatactgttgaatctttcttaaaacaaataggtaga 371


Query: 372 ggatgtgatcaacatgtagaattatttgaaaaatgggaagatcttatggaaacatcttca 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggatgtgatcaacatgtagaattatttgaaaaatgggaagatcttatggaaacatcttca 431


Query: 432 cgtaaattaaaagatttacaagttccagtttcaaatagaaaatggattcttcattgggtt 491
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 cgtaaattaaaagatttacaagttccagtttcaaatagaaaatggattcttcattgggtt 491


Query: 492 gaggaatttaaacaaggtagagatccagttttaatttcaaaatcaaaatctagatctaaa 551
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gaggaatttaaacaaggtagagatccagttttaatttcaaaatcaaaatctagatctaaa 551


Query: 552 t 552
           |
Sbjct: 552 t 552

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 667,599,366
Number of extensions: 41667390
Number of successful extensions: 3514413
Number of sequences better than 10.0: 112
Length of query: 552
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 529
Effective length of database: 93,106,754,628
Effective search space: 49253473198212
Effective search space used: 49253473198212
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.21
Homology vs Protein 
Query= Contig-U06424-1 (Contig-U06424-1Q) /CSM_Contig/Contig-U06424-1Q.Seq.d
         (552 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116979_11(AC116979|pid:none) Dictyostelium discoideum chromoso...   381   e-105
CU928175_578(CU928175|pid:none) Zygosaccharomyces rouxii strain ...    58   1e-07
(Q6FW13) RecName: Full=Protein FYV4, mitochondrial; Flags: Precu...    58   1e-07
(Q75EY2) RecName: Full=Protein FYV4, mitochondrial; Flags: Precu...    57   3e-07
(Q6BIH5) RecName: Full=Protein FYV4, mitochondrial; Flags: Precu...    55   2e-06
(Q6CTT7) RecName: Full=Protein FYV4, mitochondrial; Flags: Precu...    50   3e-05
AM270295_8(AM270295|pid:none) Aspergillus niger contig An13c0010...    50   4e-05
CU640366_621(CU640366|pid:none) Podospora anserina genomic DNA c...    46   7e-04
(A3GFF4) RecName: Full=Protein FYV4, mitochondrial; Flags: Precu...    46   7e-04
AP007159_739(AP007159|pid:none) Aspergillus oryzae RIB40 genomic...    45   0.001
(P38783) RecName: Full=Protein FYV4, mitochondrial; AltName: Ful...    44   0.003
CP000743_1437(CP000743|pid:none) Methanococcus aeolicus Nankai-3...    38   0.20
AM920435_906(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    37   0.44
(O74972) RecName: Full=Protein fyv4, mitochondrial; Flags: Precu...    36   0.57
(Q5A8X7) RecName: Full=Protein FYV4, mitochondrial; Flags: Precu...    35   0.98
CU633900_998(CU633900|pid:none) Podospora anserina genomic DNA c...    35   1.3
(Q57977) RecName: Full=Probable ribosome biogenesis protein NEP1...    35   1.3
(B4KA44) RecName: Full=Eukaryotic translation initiation factor ...    34   2.2
EF134241_1(EF134241|pid:none) Noctiluca scintillans isolate Nsc-...    34   2.2
CP000446_1595(CP000446|pid:none) Shewanella sp. MR-4, complete g...    34   2.8
CP000469_1732(CP000469|pid:none) Shewanella sp. ANA-3, complete ...    34   2.8
FN317607_1(FN317607|pid:none) Schistosoma japonicum isolate Anhu...    33   3.7
AE014187_324(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    33   3.8
CP000137_8(CP000137|pid:none) Rhizobium etli CFN 42 plasmid p42e...    33   4.8
CP000922_667(CP000922|pid:none) Anoxybacillus flavithermus WK1, ...    33   4.8
EU686623_28(EU686623|pid:none) Uncultured marine crenarchaeote A...    28   6.3
AE001362_116(AE001362|pid:none) Plasmodium falciparum 3D7 chromo...    33   6.4
CP001358_2043(CP001358|pid:none) Desulfovibrio desulfuricans sub...    32   8.3
(Q58376) RecName: Full=Uncharacterized protein MJ0966;  &F64420(...    32   8.3
(B4M693) RecName: Full=Eukaryotic translation initiation factor ...    32   8.3

>AC116979_11(AC116979|pid:none) Dictyostelium discoideum chromosome
           2 map 6445720-6776760 strain AX4, complete sequence.
          Length = 301

 Score =  381 bits (979), Expect = e-105
 Identities = 183/183 (100%), Positives = 183/183 (100%)
 Frame = +3

Query: 3   DEKFRTFLKRRKRERHLQEEKEFLAPKTVLSTKRSESQRPTWGVTYDASEDFDPSDQFHF 182
           DEKFRTFLKRRKRERHLQEEKEFLAPKTVLSTKRSESQRPTWGVTYDASEDFDPSDQFHF
Sbjct: 114 DEKFRTFLKRRKRERHLQEEKEFLAPKTVLSTKRSESQRPTWGVTYDASEDFDPSDQFHF 173

Query: 183 TPLPTDQPILPAFRAPKTVENLIIKYEDPFKDPSKTNANYFPFFRFTEPRGYTVESFLKQ 362
           TPLPTDQPILPAFRAPKTVENLIIKYEDPFKDPSKTNANYFPFFRFTEPRGYTVESFLKQ
Sbjct: 174 TPLPTDQPILPAFRAPKTVENLIIKYEDPFKDPSKTNANYFPFFRFTEPRGYTVESFLKQ 233

Query: 363 IGRGCDQHVELFEKWEDLMETSSRKLKDLQVPVSNRKWILHWVEEFKQGRDPVLISKSKS 542
           IGRGCDQHVELFEKWEDLMETSSRKLKDLQVPVSNRKWILHWVEEFKQGRDPVLISKSKS
Sbjct: 234 IGRGCDQHVELFEKWEDLMETSSRKLKDLQVPVSNRKWILHWVEEFKQGRDPVLISKSKS 293

Query: 543 RSK 551
           RSK
Sbjct: 294 RSK 296

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 884,480,222
Number of extensions: 18241082
Number of successful extensions: 57924
Number of sequences better than 10.0: 30
Number of HSP's gapped: 57879
Number of HSP's successfully gapped: 31
Length of query: 184
Length of database: 1,040,966,779
Length adjustment: 121
Effective length of query: 63
Effective length of database: 653,248,294
Effective search space: 41154642522
Effective search space used: 41154642522
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.19  gvh: 0.32  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 44.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for Contig-U06424-1 is cyt
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0