| Contig-U06388-1 |
| Contig ID |
Contig-U06388-1 |
| Contig update |
2001. 8.30 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
415 |
| Chromosome number (1..6, M) |
2 |
| Chromosome length |
8467578 |
| Start point |
4209217 |
| End point |
4208878 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
1 |
| Number of EST |
1 |
| Link to clone list |
U06388 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11. 8 |
| Homology vs DNA |
Query= Contig-U06388-1 (Contig-U06388-1Q) /CSM_Contig/Contig-U06388-1Q.Seq.d
(415 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 672 0.0 1
(AU262116) Dictyostelium discoideum vegetative cDNA clone:VS... 672 0.0 1
(AC136507) Medicago truncatula clone mth2-24o19, complete se... 46 0.014 2
(EJ067304) 1095458053271 Global-Ocean-Sampling_GS-26-01-01-1... 50 0.063 1
(AC170768) Bos taurus clone CH240-263H15, WORKING DRAFT SEQU... 44 0.081 2
(CU468464) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 0.15 2
(AM465848) Vitis vinifera, whole genome shotgun sequence, co... 42 0.15 3
(CR376753) Zebrafish DNA sequence from clone DKEY-182P15 in ... 48 0.25 1
(FC806702) CBGC8455.fwd CBGC Lottia gigantea 15h 18h embryos... 48 0.25 1
(FC806701) CBGC8455.rev CBGC Lottia gigantea 15h 18h embryos... 48 0.25 1
(FC798177) CBGC25264.rev CBGC Lottia gigantea 15h 18h embryo... 48 0.25 1
(FC723674) CBBG1621.fwd CBBG Lottia gigantea 12,15,18h embry... 48 0.25 1
(FC582047) CAXP15417.fwd CAXP Lottia gigantea from head, foo... 48 0.25 1
(AC112855) Rattus norvegicus clone CH230-252K5, WORKING DRAF... 36 0.28 5
(AC162468) Bos taurus clone CH240-120B17, WORKING DRAFT SEQU... 34 0.53 2
(AC124832) Mus musculus chromosome 1, clone RP23-294B11, com... 32 0.53 2
(AC171871) Bos taurus clone CH240-307J2, WORKING DRAFT SEQUE... 34 0.53 2
(EV847375) FTSDA86TF Tetrahymena thermophila SB210 cDNA libr... 42 0.66 2
(AQ401153) HS_5062_A2_E10_SP6E RPCI-11 Human Male BAC Librar... 36 0.74 2
(CA794913) Cac_BL_1964 Cac_BL (Bean and Leaf from Amelonardo... 36 0.77 2
(AC138155) Carollia perspicillata clone 38H19, WORKING DRAFT... 38 0.93 3
(BX465208) Zebrafish DNA sequence from clone DKEYP-91H6 in l... 46 0.98 1
(AC146941) Medicago truncatula clone mth2-133o10, complete s... 46 0.98 1
(AC225459) Medicago truncatula clone mth2-161o20, WORKING DR... 46 0.98 1
(AC165649) Bos taurus clone CH240-167M20, WORKING DRAFT SEQU... 46 0.98 1
(EI669999) TAACSP3AShA_0050M11F TAACSP3AShA Triticum aestivu... 46 0.98 1
(FK142704) XABT175530.b1 Gateway compatible cien cDNA librar... 46 0.98 1
(CU424466) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 1.3 4
(EJ637560) 1093006403228 Global-Ocean-Sampling_GS-29-01-01-1... 36 1.3 3
(AC139271) Homo sapiens chromosome 5 clone RP11-586K22, WORK... 44 1.5 3
(EJ156528) 1092344031782 Global-Ocean-Sampling_GS-27-01-01-1... 34 1.5 2
(AC173445) Atelerix albiventris clone LB4-197M1, WORKING DRA... 38 1.5 3
(AC182911) Bos taurus clone CH240-306G15, WORKING DRAFT SEQU... 34 1.8 4
(AC133155) Mus musculus clone RP24-418L20, WORKING DRAFT SEQ... 38 2.1 3
(AR556060) Sequence 11191 from patent US 6747137. 34 2.1 3
(CU570999) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 2.5 5
(U28972) Spiroplasma citri orfa and orff genes, partial cds,... 40 2.5 2
(EK079426) 1092961089419 Global-Ocean-Sampling_GS-31-01-01-1... 34 2.6 2
(G33271) human STS SHGC-52564, sequence tagged site. 44 3.9 1
(AC161528) Mus musculus chromosome 8, clone RP23-369H18, com... 44 3.9 1
(AC130826) Mus musculus BAC clone RP23-400F13 from chromosom... 44 3.9 1
(AC102381) Mus musculus chromosome 8, clone RP24-180I19, com... 44 3.9 1
(EF081029) Triticum urartu clone BAC 292N12 genomic sequence. 44 3.9 1
(EF081026) Triticum turgidum subsp. durum clone BAC 221H19 g... 44 3.9 1
(AF085429) Candida parapsilosis ADP/ATP carrier protein gene... 44 3.9 1
(BX649374) Sminthopsis DNA sequence from clone RZPD668-106P8. 44 3.9 1
(AC124857) Homo sapiens chromosome 5 clone RP11-703G5, compl... 44 3.9 1
(AC113426) Homo sapiens chromosome 5 clone RP11-718N2, compl... 44 3.9 1
(AC093263) Homo sapiens chromosome 5 clone RP11-259G23, comp... 44 3.9 1
(AC022018) Homo sapiens chromosome 10 clone RP11-214N15, com... 44 3.9 1
(AC153391) Bos taurus clone CH240-20A11, WORKING DRAFT SEQUE... 44 3.9 1
(AC139814) Homo sapiens chromosome 5 clone RP11-1384I17, WOR... 44 3.9 1
(AC139812) Homo sapiens chromosome 5 clone RP11-1375M22, WOR... 44 3.9 1
(AC139804) Homo sapiens chromosome 5 clone RP11-1349B19, WOR... 44 3.9 1
(AC139462) Homo sapiens chromosome 5 clone RP11-1223D8, WORK... 44 3.9 1
(AC124859) Homo sapiens chromosome 5 clone RP11-876M24, WORK... 44 3.9 1
(AC112189) Homo sapiens chromosome 5 clone RP11-305G6, WORKI... 44 3.9 1
(AC105579) Rattus norvegicus clone CH230-233K21, *** SEQUENC... 44 3.9 1
(AC102747) Mus musculus clone RP24-404G8, WORKING DRAFT SEQU... 44 3.9 1
(AC100992) Mus musculus clone RP23-77F13, LOW-PASS SEQUENCE ... 44 3.9 1
(AC099428) Rattus norvegicus clone CH230-101K6, WORKING DRAF... 44 3.9 1
(AC095170) Rattus norvegicus clone CH230-7K9, *** SEQUENCING... 44 3.9 1
(AC079983) Homo sapiens chromosome UL clone RP11-305G6, WORK... 44 3.9 1
(CU468633) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 3.9 1
(AC231103) Bos taurus clone CH240-491A23, WORKING DRAFT SEQU... 44 3.9 1
(AC219736) Bos taurus clone CH240-324N13, WORKING DRAFT SEQU... 44 3.9 1
(AC174569) Bos taurus clone CH240-318N6, WORKING DRAFT SEQUE... 44 3.9 1
(AC165110) Bos taurus clone CH240-162K16, WORKING DRAFT SEQU... 44 3.9 1
(AC016107) Homo sapiens clone RP11-26L18, WORKING DRAFT SEQU... 44 3.9 1
(ET740438) CHO_OF241xa21r1.ab1 CHO_OF Nicotiana tabacum geno... 44 3.9 1
(ER781122) TAACSP3AShA_0125J06R TAACSP3AShA Triticum aestivu... 44 3.9 1
(ER777695) TAACSP3AShA_0095L20F TAACSP3AShA Triticum aestivu... 44 3.9 1
(ER775706) TAACSP3AShA_0095E14R TAACSP3AShA Triticum aestivu... 44 3.9 1
(ER775359) TAACSP3AShA_0005J11R TAACSP3AShA Triticum aestivu... 44 3.9 1
(EK135282) 1093012206478 Global-Ocean-Sampling_GS-31-01-01-1... 44 3.9 1
(EJ819295) 1093017530710 Global-Ocean-Sampling_GS-30-02-01-1... 44 3.9 1
(EJ796234) 1093017402166 Global-Ocean-Sampling_GS-30-02-01-1... 44 3.9 1
(EJ701505) 1092956038021 Global-Ocean-Sampling_GS-30-02-01-1... 44 3.9 1
(EJ699794) 1092956031298 Global-Ocean-Sampling_GS-30-02-01-1... 44 3.9 1
(EJ541431) 1092955377059 Global-Ocean-Sampling_GS-29-01-01-1... 44 3.9 1
(EI675425) TAACSP3AShA_0130G03F TAACSP3AShA Triticum aestivu... 44 3.9 1
(EI674079) TAACSP3AShA_0070C01R TAACSP3AShA Triticum aestivu... 44 3.9 1
(EI672730) TAACSP3AShA_0090I21R TAACSP3AShA Triticum aestivu... 44 3.9 1
(EI669806) TAACSP3AShA_0040P08R TAACSP3AShA Triticum aestivu... 44 3.9 1
(DX381341) 3B_146_O21_RM1 Triticum aestivum chromosome 3B-sp... 44 3.9 1
(DX367058) 3B_011_O12_RM1 Triticum aestivum chromosome 3B-sp... 44 3.9 1
(DX363663) 3B_005_B15_FM1 Triticum aestivum chromosome 3B-sp... 44 3.9 1
(DU908978) 372880 Tomato EcoRI BAC Library Solanum lycopersi... 44 3.9 1
(CT049877) Sus scrofa genomic clone PigE-217N6, genomic surv... 44 3.9 1
(CR865538) Sus scrofa BES. 44 3.9 1
(CL109623) ISB1-51N24_Sp6.1 ISB1 Xenopus (Silurana) tropical... 44 3.9 1
(BZ945521) CH240_122D7.TJ CHORI-240 Bos taurus genomic clone... 44 3.9 1
(BZ007928) oef86c10.g1 B.oleracea002 Brassica oleracea genom... 44 3.9 1
(EE477458) BNYS4DCT_UP_022_C02_21MAR2005_012 Brassica napus ... 44 3.9 1
(DV609610) EST1212606 Glossina morsitans morsitans Fat body ... 44 3.9 1
(DV609515) EST1212511 Glossina morsitans morsitans Fat body ... 44 3.9 1
(DV604403) EST1207399 Glossina morsitans morsitans Fat body ... 44 3.9 1
(BE156641) QV0-HT0368-150200-113-f03 HT0368 Homo sapiens cDN... 44 3.9 1
(W88782) zh69a01.s1 Soares_fetal_liver_spleen_1NFLS_S1 Homo ... 44 3.9 1
(AE002160) Chlamydia muridarum Nigg, complete genome. 44 3.9 1
>(AC117070) Dictyostelium discoideum chromosome 2 map 2097701-2233941
strain AX4, complete sequence.
Length = 136240
Score = 672 bits (339), Expect = 0.0
Identities = 339/339 (100%)
Strand = Plus / Plus
Query: 1 ttaaatagaaacgaagagaaattgaaatcacaaggtgaactaatgcaaaagattgaagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16199 ttaaatagaaacgaagagaaattgaaatcacaaggtgaactaatgcaaaagattgaagag 16258
Query: 61 aaatcaaatatccttcaaaaacaactctcaaaagtcactgaagatcttcatagttgtagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16259 aaatcaaatatccttcaaaaacaactctcaaaagtcactgaagatcttcatagttgtagt 16318
Query: 121 tttgatttagagaaacataaacgattcgttagagagaataatgctcactctttggaattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16319 tttgatttagagaaacataaacgattcgttagagagaataatgctcactctttggaattg 16378
Query: 181 aaaactcaattggatcatcttagcaatttaaacgctgaattgaaaaagaaagctgatgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16379 aaaactcaattggatcatcttagcaatttaaacgctgaattgaaaaagaaagctgatgat 16438
Query: 241 tcaatctttgcattggaacgtgaaattgataaagcaaagagattggatgaagagaaacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16439 tcaatctttgcattggaacgtgaaattgataaagcaaagagattggatgaagagaaacaa 16498
Query: 301 cttttaaaaaagaaattagagaaagctacctctgcaaac 339
|||||||||||||||||||||||||||||||||||||||
Sbjct: 16499 cttttaaaaaagaaattagagaaagctacctctgcaaac 16537
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 491,838,775
Number of extensions: 30802989
Number of successful extensions: 2653953
Number of sequences better than 10.0: 111
Length of query: 415
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 392
Effective length of database: 93,106,754,628
Effective search space: 36497847814176
Effective search space used: 36497847814176
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
|
| protein update |
2009. 6.21 |
| Homology vs Protein |
Query= Contig-U06388-1 (Contig-U06388-1Q) /CSM_Contig/Contig-U06388-1Q.Seq.d
(415 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(Q86KL1) RecName: Full=Probable E3 ubiquitin-protein ligase bre1... 182 4e-45
(Q8TDY2) RecName: Full=RB1-inducible coiled-coil protein 1; 42 0.005
D86958_1(D86958|pid:none) Homo sapiens mRNA for KIAA0203 gene, p... 42 0.005
AB059622_1(AB059622|pid:none) Homo sapiens RBICC mRNA for Rb1-in... 42 0.005
BC017556_1(BC017556|pid:none) Homo sapiens RB1-inducible coiled-... 42 0.005
AJ131892_1(AJ131892|pid:none) Gallus gallus mRNA for Hyperion pr... 39 0.073
BC030802_1(BC030802|pid:none) Homo sapiens, Similar to ring fing... 38 0.096
(Q3U319) RecName: Full=E3 ubiquitin-protein ligase BRE1B; ... 38 0.096
CR859085_1(CR859085|pid:none) Pongo abelii mRNA; cDNA DKFZp459F0... 38 0.096
(Q5RAU7) RecName: Full=E3 ubiquitin-protein ligase BRE1B; ... 38 0.096
CR627431_1(CR627431|pid:none) Homo sapiens mRNA; cDNA DKFZp686K1... 38 0.096
AK027406_1(AK027406|pid:none) Homo sapiens cDNA FLJ14500 fis, cl... 38 0.096
AB014561_1(AB014561|pid:none) Homo sapiens mRNA for KIAA0661 pro... 38 0.096
AK129184_1(AK129184|pid:none) Mus musculus mRNA for mKIAA0661 pr... 38 0.096
AK131310_1(AK131310|pid:none) Homo sapiens cDNA FLJ16291 fis, cl... 38 0.096
(O75150) RecName: Full=E3 ubiquitin-protein ligase BRE1B; ... 38 0.096
AK291666_1(AK291666|pid:none) Homo sapiens cDNA FLJ78667 complet... 38 0.096
BC038348_1(BC038348|pid:none) Mus musculus ring finger protein 4... 38 0.096
(Q4R7K7) RecName: Full=E3 ubiquitin-protein ligase BRE1B; ... 38 0.096
AY892669_1(AY892669|pid:none) Synthetic construct Homo sapiens c... 38 0.096
AK154982_1(AK154982|pid:none) Mus musculus NOD-derived CD11c +ve... 38 0.096
AK294258_1(AK294258|pid:none) Homo sapiens cDNA FLJ58158 complet... 38 0.096
AK042654_1(AK042654|pid:none) Mus musculus 7 days neonate cerebe... 38 0.096
AK304521_1(AK304521|pid:none) Homo sapiens cDNA FLJ59150 complet... 38 0.096
FN392319_1303(FN392319|pid:none) Pichia pastoris GS115 chromosom... 38 0.12
AM483892_1(AM483892|pid:none) Vitis vinifera contig VV78X197160.... 38 0.12
CP001047_455(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ... 38 0.12
CP000393_2580(CP000393|pid:none) Trichodesmium erythraeum IMS101... 38 0.12
AY246704_1(AY246704|pid:none) Equus caballus retinoblastoma-asso... 38 0.12
AM180355_1256(AM180355|pid:none) Clostridium difficile 630 compl... 37 0.16
CP001047_47(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, c... 37 0.21
AC117080_16(AC117080|pid:none) Dictyostelium discoideum chromoso... 37 0.28
EU543652_1(EU543652|pid:none) Chorioptes panda paramyosin mRNA, ... 37 0.28
(Q10411) RecName: Full=Sporulation-specific protein 15; &CU3296... 37 0.28
(Q967Z0) RecName: Full=Paramyosin; AltName: Full=Antigen Df642; ... 37 0.28
CU928170_345(CU928170|pid:none) Kluyveromyces thermotolerans str... 37 0.28
CP001083_2568(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 37 0.28
CP000061_184(CP000061|pid:none) Aster yellows witches'-broom phy... 37 0.28
CR767821_494(CR767821|pid:none) Ehrlichia ruminantium strain Wel... 36 0.36
FM992695_278(FM992695|pid:none) Candida dubliniensis CD36 chromo... 36 0.36
(O62479) RecName: Full=Spindle assembly abnormal protein 6; &AL... 36 0.47
EU606031_1(EU606031|pid:none) Sarcoptes scabiei paramyosin mRNA,... 36 0.47
(Q86RN8) RecName: Full=Paramyosin; &AF479582_1(AF479582|pid:none) 36 0.47
Z54238_9(Z54238|pid:none) Caenorhabditis elegans Cosmid T28C6, c... 36 0.47
Z54238_7(Z54238|pid:none) Caenorhabditis elegans Cosmid T28C6, c... 36 0.47
CU928171_576(CU928171|pid:none) Kluyveromyces thermotolerans str... 36 0.47
AC136449_18(AC136449|pid:none) Medicago truncatula clone mth2-11... 36 0.47
AC152348_12(AC152348|pid:none) Medicago truncatula clone mth2-52... 35 0.62
AK161248_1(AK161248|pid:none) Mus musculus adult male testis cDN... 35 0.62
CT005271_71(CT005271|pid:none) Leishmania major strain Friedlin,... 35 0.62
AE015450_331(AE015450|pid:none) Mycoplasma gallisepticum strain ... 35 0.62
AB015484_1(AB015484|pid:none) Dugesia japonica mRNA for myosin h... 35 0.62
AF499596_28(AF499596|pid:none) Phthorimaea operculella granulovi... 35 0.62
(Q3V125) RecName: Full=Coiled-coil domain-containing protein 110... 35 0.62
CP001103_3413(CP001103|pid:none) Alteromonas macleodii 'Deep eco... 35 0.62
(Q8I4V5) RecName: Full=Probable U3 small nucleolar RNA-associate... 35 0.81
CP000123_805(CP000123|pid:none) Mycoplasma capricolum subsp. cap... 35 0.81
AM494968_34(AM494968|pid:none) Leishmania braziliensis chromosom... 35 0.81
BC151335_1(BC151335|pid:none) Bos taurus kinectin 1 (kinesin rec... 35 0.81
(Q9P219) RecName: Full=Protein Daple; AltName: Full=Dvl-associat... 35 0.81
CR382132_555(CR382132|pid:none) Yarrowia lipolytica strain CLIB1... 35 0.81
AL662968_19(AL662968|pid:none) Oryza sativa genomic DNA, chromos... 35 0.81
AF538602_3(AF538602|pid:none) Choristoneura fumiferana granulovi... 35 1.1
(A2BGD5) RecName: Full=Calcium-binding and coiled-coil domain-co... 35 1.1
AM910996_572(AM910996|pid:none) Plasmodium knowlesi strain H chr... 35 1.1
(O76329) RecName: Full=Interaptin; AltName: Full=Alpha-actinin B... 34 1.4
AY812135_1(AY812135|pid:none) Schistosoma japonicum SJCHGC07689 ... 34 1.4
L41069_1(L41069|pid:none) Mus musculus testicular protein mRNA, ... 34 1.4
BC072947_1(BC072947|pid:none) Xenopus laevis hypothetical protei... 34 1.4
AK128143_1(AK128143|pid:none) Homo sapiens cDNA FLJ46264 fis, cl... 34 1.4
AL136877_1(AL136877|pid:none) Homo sapiens mRNA; cDNA DKFZp434F2... 34 1.4
CP001279_1404(CP001279|pid:none) Nautilia profundicola AmH, comp... 34 1.4
(Q9NTJ3) RecName: Full=Structural maintenance of chromosomes pro... 34 1.4
CP001047_264(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ... 34 1.4
CP001146_1446(CP001146|pid:none) Dictyoglomus thermophilum H-6-1... 34 1.4
AL833949_1(AL833949|pid:none) Homo sapiens mRNA; cDNA DKFZp434N2... 34 1.4
U91585_1(U91585|pid:none) Girardia tigrina myosin heavy chain (G... 34 1.4
(Q62812) RecName: Full=Myosin-9; AltName: Full=Myosin heavy chai... 34 1.4
AP008971_958(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA,... 34 1.8
AL845534_5(AL845534|pid:none) Mouse DNA sequence from clone RP23... 34 1.8
AC116920_30(AC116920|pid:none) Dictyostelium discoideum chromoso... 34 1.8
M31013_1(M31013|pid:none) Human nonmuscle myosin heavy chain (NM... 34 1.8
EF200540_2(EF200540|pid:none) Clover phyllody phytoplasma clone ... 34 1.8
BX649292_1(BX649292|pid:none) Zebrafish DNA sequence from clone ... 34 1.8
AL773523_3(AL773523|pid:none) Mouse DNA sequence from clone RP23... 34 1.8
AL773523_5(AL773523|pid:none) Mouse DNA sequence from clone RP23... 34 1.8
(A2AL36) RecName: Full=Centriolin; AltName: Full=110 kDa centros... 34 1.8
CR382133_505(CR382133|pid:none) Debaryomyces hansenii strain CBS... 34 1.8
EU812511_1(EU812511|pid:none) Bombyx mandarina strain suzhou par... 34 1.8
AY063894_1(AY063894|pid:none) Arabidopsis thaliana putative MADS... 34 1.8
U31906_1(U31906|pid:none) Homo sapiens golgin-245 mRNA, complete... 34 1.8
AJ312240_14(AJ312240|pid:none) Bacteriophage PSA complete genome. 34 1.8
BC158010_1(BC158010|pid:none) Mus musculus centrosomal protein 1... 34 1.8
DQ122809_1(DQ122809|pid:none) Medicago sativa clone P24 nuclear ... 33 2.4
CP000123_802(CP000123|pid:none) Mycoplasma capricolum subsp. cap... 33 2.4
BC085514_1(BC085514|pid:none) Danio rerio zgc:103414, mRNA (cDNA... 33 2.4
(Q28623) RecName: Full=Sarcolemmal membrane-associated protein; ... 33 2.4
(A1W0J3) RecName: Full=2',3'-cyclic-nucleotide 2'-phosphodiester... 33 2.4
AM910991_358(AM910991|pid:none) Plasmodium knowlesi strain H chr... 33 2.4
U21157_1(U21157|pid:none) Oryctolagus cuniculus sarcolemmal asso... 33 2.4
AM910990_191(AM910990|pid:none) Plasmodium knowlesi strain H chr... 33 2.4
BX572633_2(BX572633|pid:none) Zebrafish DNA sequence from clone ... 33 2.4
U21155_1(U21155|pid:none) Oryctolagus cuniculus sarcolemmal asso... 33 2.4
FM992690_193(FM992690|pid:none) Candida dubliniensis CD36 chromo... 33 2.4
AM920427_1649(AM920427|pid:none) Penicillium chrysogenum Wiscons... 33 2.4
BC144521_1(BC144521|pid:none) Homo sapiens KIAA1529, mRNA (cDNA ... 33 3.1
U59295_1(U59295|pid:none) Placopecten magellanicus myosin heavy ... 33 3.1
AM422018_639(AM422018|pid:none) Candidatus Phytoplasma australie... 33 3.1
(P93203) RecName: Full=MAR-binding filament-like protein 1; &T0... 33 3.1
(Q75AF5) RecName: Full=Golgin IMH1; &AE016817_363(AE016817|pid:... 33 3.1
D21824_1(D21824|pid:none) Lilium longiflorum LIM18 mRNA, complet... 33 3.1
U59294_1(U59294|pid:none) Placopecten magellanicus myosin heavy ... 33 3.1
AM910994_143(AM910994|pid:none) Plasmodium knowlesi strain H chr... 33 3.1
AB040962_1(AB040962|pid:none) Homo sapiens mRNA for KIAA1529 pro... 33 3.1
X92370_1(X92370|pid:none) S.pyogenes emm25 gene. 33 3.1
BC123995_1(BC123995|pid:none) Xenopus tropicalis hypothetical pr... 33 3.1
AF226280_49(AF226280|pid:none) Campylobacter jejuni 81-176 virul... 33 3.1
CR548612_382(CR548612|pid:none) Paramecium tetraurelia macronucl... 33 3.1
FN357339_40(FN357339|pid:none) Schistosoma mansoni genome sequen... 33 3.1
CP000879_1749(CP000879|pid:none) Petrotoga mobilis SJ95, complet... 33 3.1
AK302965_1(AK302965|pid:none) Homo sapiens cDNA FLJ50036 complet... 33 3.1
CR749320_1(CR749320|pid:none) Homo sapiens mRNA; cDNA DKFZp686B2... 33 3.1
CP001251_642(CP001251|pid:none) Dictyoglomus turgidum DSM 6724, ... 33 3.1
AE014186_139(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 33 3.1
AE017043_80(AE017043|pid:none) Yersinia pestis biovar Microtus s... 33 3.1
CP001166_227(CP001166|pid:none) Bacillus cereus H3081.97 plasmid... 33 3.1
CP001179_254(CP001179|pid:none) Bacillus cereus AH187 plasmid pA... 33 3.1
BC166135_1(BC166135|pid:none) Xenopus tropicalis hypothetical pr... 33 3.1
AC146757_7(AC146757|pid:none) Medicago truncatula clone mth2-16n... 33 3.1
BC167944_1(BC167944|pid:none) Xenopus tropicalis cDNA clone IMAG... 33 4.0
U69899_1(U69899|pid:none) Rhynchosciara americana Rap8 (Rac-3-1)... 33 4.0
CP000879_1305(CP000879|pid:none) Petrotoga mobilis SJ95, complet... 33 4.0
BC144320_1(BC144320|pid:none) Homo sapiens coiled-coil domain co... 33 4.0
AB201172_1(AB201172|pid:none) Homo sapiens GRDN mRNA for girdin,... 33 4.0
CP001101_970(CP001101|pid:none) Chlorobium phaeobacteroides BS1,... 33 4.0
T18356(T18356) membrane protein p120 - Mycoplasma hominis &X784... 33 4.0
CR380958_534(CR380958|pid:none) Candida glabrata strain CBS138 c... 33 4.0
AB297457_1(AB297457|pid:none) Molgula tectiformis myomegalin mRN... 33 4.0
AC006651_10(AC006651|pid:none) Caenorhabditis elegans fosmid H06... 33 4.0
CP000393_1301(CP000393|pid:none) Trichodesmium erythraeum IMS101... 33 4.0
AE004437_269(AE004437|pid:none) Halobacterium sp. NRC-1, complet... 33 4.0
AM180355_924(AM180355|pid:none) Clostridium difficile 630 comple... 33 4.0
AL844508_198(AL844508|pid:none) Plasmodium falciparum 3D7 chromo... 33 4.0
(P35579) RecName: Full=Myosin-9; AltName: Full=Myosin heavy chai... 33 4.0
AM910994_385(AM910994|pid:none) Plasmodium knowlesi strain H chr... 33 4.0
BC132736_1(BC132736|pid:none) Homo sapiens coiled-coil domain co... 33 4.0
CP000496_316(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 33 4.0
BC047097_1(BC047097|pid:none) Homo sapiens KIAA1529, mRNA (cDNA ... 33 4.0
AM910993_328(AM910993|pid:none) Plasmodium knowlesi strain H chr... 33 4.0
BC060037_1(BC060037|pid:none) Homo sapiens coiled-coil domain co... 33 4.0
BC078168_1(BC078168|pid:none) Homo sapiens coiled-coil domain co... 33 4.0
AM910992_23(AM910992|pid:none) Plasmodium knowlesi strain H chro... 33 4.0
BC166177_1(BC166177|pid:none) Xenopus tropicalis hypothetical pr... 33 4.0
BC042415_1(BC042415|pid:none) Mus musculus uveal autoantigen wit... 33 4.0
BX908798_779(BX908798|pid:none) Parachlamydia-related symbiont U... 33 4.0
EF082883_1(EF082883|pid:none) Picea sitchensis clone WS02716_G24... 33 4.0
AC006651_11(AC006651|pid:none) Caenorhabditis elegans fosmid H06... 33 4.0
(Q0WVL7) RecName: Full=Golgin candidate 5; Short=AtGC5;... 33 4.0
AE016825_1328(AE016825|pid:none) Chromobacterium violaceum ATCC ... 33 4.0
(Q3V6T2) RecName: Full=Girdin; AltName: Full=Girders of actin fi... 33 4.0
AY913766_1(AY913766|pid:none) Xenopus laevis ventricular myosin ... 32 5.2
BC149216_1(BC149216|pid:none) Bos taurus similar to sarcolemma a... 32 5.2
CP000721_938(CP000721|pid:none) Clostridium beijerinckii NCIMB 8... 32 5.2
AJ312390_1(AJ312390|pid:none) Mus musculus mRNA for nonmuscle he... 32 5.2
AK158884_1(AK158884|pid:none) Mus musculus visual cortex cDNA, R... 32 5.2
CP000383_3441(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 32 5.2
CR954211_55(CR954211|pid:none) Ostreococcus tauri strain OTTH059... 32 5.2
AY058651_1(AY058651|pid:none) Drosophila melanogaster LD35285 fu... 32 5.2
AK148323_1(AK148323|pid:none) Mus musculus B16 F10Y cells cDNA, ... 32 5.2
CR954203_280(CR954203|pid:none) Ostreococcus tauri strain OTTH05... 32 5.2
CU928170_686(CU928170|pid:none) Kluyveromyces thermotolerans str... 32 5.2
X69325_1(X69325|pid:none) Mousepox virus ATI gene for A-type inc... 32 5.2
BX255903_1(BX255903|pid:none) Zebrafish DNA sequence from clone ... 32 5.2
CP000102_112(CP000102|pid:none) Methanosphaera stadtmanae DSM 30... 32 5.2
(Q2QLB3) Cortactin-binding protein 2 (CortBP2). 32 5.2
CP000728_2381(CP000728|pid:none) Clostridium botulinum F str. La... 32 5.2
AL138921_4(AL138921|pid:none) Human DNA sequence from clone RP11... 32 5.2
CT005244_1(CT005244|pid:none) Leishmania major strain Friedlin, ... 32 5.2
AK147211_1(AK147211|pid:none) Mus musculus 15 days embryo liver ... 32 5.2
(Q9UZC8) RecName: Full=DNA double-strand break repair rad50 ATPa... 32 5.2
(P43689) Tropomyosin-2 (TMII). &M97554_1(M97554|pid:none) 32 5.2
BT001617_1(BT001617|pid:none) Drosophila melanogaster RE34950 fu... 32 5.2
(Q2IBF7) Cortactin-binding protein 2 (CortBP2). 32 5.2
CP001581_2583(CP001581|pid:none) Clostridium botulinum A2 str. K... 32 5.2
FB790104_1(FB790104|pid:none) Sequence 9377 from Patent WO200803... 32 5.2
A84505_1(A84505|pid:none) Sequence 120 from Patent WO9845704. &... 32 5.2
A47297(A47297;A55441) myosin heavy chain form B, nonmuscle - Afr... 32 5.2
CP000764_2165(CP000764|pid:none) Bacillus cereus subsp. cytotoxi... 32 5.2
AP007281_713(AP007281|pid:none) Lactobacillus reuteri JCM 1112 D... 32 5.2
CP000099_578(CP000099|pid:none) Methanosarcina barkeri str. Fusa... 32 5.2
AM910996_691(AM910996|pid:none) Plasmodium knowlesi strain H chr... 32 5.2
CP000439_902(CP000439|pid:none) Francisella tularensis subsp. no... 32 5.2
CP000979_1(CP000979|pid:none) Borrelia duttonii Ly plasmid pl165... 32 5.2
CP000099_362(CP000099|pid:none) Methanosarcina barkeri str. Fusa... 32 5.2
FJ882854_56(FJ882854|pid:none) Bombyx mandarina nucleopolyhedrov... 32 6.9
S44925(S44925) IB3/5-polypeptide - mouse &X79131_1(X79131|pid:n... 32 6.9
T28676(T28676;A45521)rhoptry protein - Plasmodium yoelii (fragme... 32 6.9
CP000806_2382(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 32 6.9
(P14105) RecName: Full=Myosin-9; AltName: Full=Myosin heavy chai... 32 6.9
AY035224_1(AY035224|pid:none) Gallus gallus cardiac muscle facto... 32 6.9
BC003189_1(BC003189|pid:none) Homo sapiens janus kinase and micr... 32 6.9
AE009950_1952(AE009950|pid:none) Pyrococcus furiosus DSM 3638, c... 32 6.9
AY040821_1(AY040821|pid:none) Loligo pealei non-muscle myosin II... 32 6.9
AB478516_8(AB478516|pid:none) Wolbachia endosymbiont of Cadra ca... 32 6.9
BC118919_1(BC118919|pid:none) Homo sapiens cingulin-like 1, mRNA... 32 6.9
CP000726_2220(CP000726|pid:none) Clostridium botulinum A str. AT... 32 6.9
AJ749949_1048(AJ749949|pid:none) Francisella tularensis subsp. t... 32 6.9
M93676_3(M93676|pid:none) Chicken nonmuscle myosin heavy chain (... 32 6.9
S03166(S03166;A27066;A26045;A36604;A43298) myosin heavy chain, g... 32 6.9
M93676_2(M93676|pid:none) Chicken nonmuscle myosin heavy chain (... 32 6.9
AB051536_1(AB051536|pid:none) Homo sapiens mRNA for KIAA1749 pro... 32 6.9
AM920437_253(AM920437|pid:none) Penicillium chrysogenum Wisconsi... 32 6.9
S06117(S06117)myosin heavy chain, nonmuscle (clone lambda-FMHC) ... 32 6.9
CP000383_153(CP000383|pid:none) Cytophaga hutchinsonii ATCC 3340... 32 6.9
CP001056_1534(CP001056|pid:none) Clostridium botulinum B str. Ek... 32 6.9
DQ010936_1(DQ010936|pid:none) Streptococcus pyogenes M protein (... 32 6.9
AM910983_147(AM910983|pid:none) Plasmodium knowlesi strain H chr... 32 6.9
CP000413_755(CP000413|pid:none) Lactobacillus gasseri ATCC 33323... 32 6.9
(Q6P9P6) RecName: Full=Kinesin-like protein KIF11; AltName: Full... 32 6.9
EU399820_1(EU399820|pid:none) Sus scrofa IkB kinase-a (IKK-alpha... 32 6.9
BC168905_1(BC168905|pid:none) Rattus norvegicus conserved helix-... 32 6.9
(Q802R8) RecName: Full=Structural maintenance of chromosomes pro... 32 6.9
AK173254_1(AK173254|pid:none) Mus musculus premature mRNA for mK... 32 6.9
AF092564_1(AF092564|pid:none) Homo sapiens chromosome-associated... 32 6.9
B43402(B43402;A43402) myosin heavy chain-B, neuronal - chicken ... 32 6.9
BC149722_1(BC149722|pid:none) Bos taurus coiled-coil domain cont... 32 6.9
BC093827_1(BC093827|pid:none) Homo sapiens cingulin-like 1, mRNA... 32 6.9
AK302306_1(AK302306|pid:none) Homo sapiens cDNA FLJ59579 complet... 32 6.9
AY274808_1(AY274808|pid:none) Homo sapiens KIAA1749 protein mRNA... 32 6.9
CP001146_532(CP001146|pid:none) Dictyoglomus thermophilum H-6-12... 32 6.9
M93676_4(M93676|pid:none) Chicken nonmuscle myosin heavy chain (... 32 6.9
CT005268_23(CT005268|pid:none) Leishmania major strain Friedlin,... 32 6.9
AE014187_335(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 32 6.9
(Q0VF96) RecName: Full=Cingulin-like protein 1; AltName: Full=Pa... 32 6.9
BA000001_1852(BA000001|pid:none) Pyrococcus horikoshii OT3 DNA, ... 32 6.9
(Q555I8) RecName: Full=Kinesin-related protein 9; AltName: Full=... 32 8.9
Z81118_6(Z81118|pid:none) Caenorhabditis elegans Cosmid T10G3, c... 32 8.9
AB030647_1(AB030647|pid:none) Mus musculus mRNA for nuclear memb... 32 8.9
CP000252_234(CP000252|pid:none) Syntrophus aciditrophicus SB, co... 32 8.9
EU841912_1(EU841912|pid:none) Xenopus laevis smooth muscle myosi... 32 8.9
(O60282) RecName: Full=Kinesin heavy chain isoform 5C; AltName: ... 32 8.9
AC108512_1(AC108512|pid:none) Homo sapiens BAC clone RP13-549D10... 32 8.9
BC127772_1(BC127772|pid:none) Homo sapiens kinesin family member... 32 8.9
AB102779_1(AB102779|pid:none) Dictyostelium discoideum kin2 mRNA... 32 8.9
AL132948_25(AL132948|pid:none) Caenorhabditis elegans YAC Y39B6A... 32 8.9
AP009049_2825(AP009049|pid:none) Clostridium kluyveri NBRC 12016... 32 8.9
EU841911_1(EU841911|pid:none) Xenopus laevis smooth muscle myosi... 32 8.9
CT573072_296(CT573072|pid:none) Kuenenia stuttgartiensis genome ... 32 8.9
BC077316_1(BC077316|pid:none) Xenopus laevis heat shock protein ... 32 8.9
BC110287_1(BC110287|pid:none) Homo sapiens kinesin family member... 32 8.9
(Q4WVA0) RecName: Full=Probable kinetochore protein nuf2; 32 8.9
AL844508_36(AL844508|pid:none) Plasmodium falciparum 3D7 chromos... 32 8.9
BX936418_2(BX936418|pid:none) Zebrafish DNA sequence from clone ... 32 8.9
BT041836_1(BT041836|pid:none) Zea mays full-length cDNA clone ZM... 32 8.9
AM910992_110(AM910992|pid:none) Plasmodium knowlesi strain H chr... 32 8.9
(P31096) RecName: Full=Osteopontin; AltName: Full=Bone sialoprot... 32 8.9
FB790118_1(FB790118|pid:none) Sequence 9391 from Patent WO200803... 32 8.9
BT054584_1(BT054584|pid:none) Zea mays full-length cDNA clone ZM... 32 8.9
T24806(T24806)hypothetical protein T10G3.5 - Caenorhabditis eleg... 32 8.9
AB011103_1(AB011103|pid:none) Homo sapiens mRNA for KIAA0531 pro... 32 8.9
AY032860_1(AY032860|pid:none) Caenorhabditis elegans EEA1 mRNA, ... 32 8.9
(Q6BHF8) RecName: Full=Autophagy-related protein 23; &CR382139_... 32 8.9
CR380956_330(CR380956|pid:none) Candida glabrata strain CBS138 c... 32 8.9
CR548612_429(CR548612|pid:none) Paramecium tetraurelia macronucl... 32 8.9
FB790494_1(FB790494|pid:none) Sequence 9767 from Patent WO200803... 32 8.9
AJ237670_1(AJ237670|pid:none) Rattus norvegicus mRNA for CLIP-17... 32 8.9
EU971101_1(EU971101|pid:none) Zea mays clone 357503 B-cell recep... 32 8.9
(P42636) Tropomyosin-1 (TMI) (Bg 39). &A33085(A33085) &M85199_1... 32 8.9
AC104433_26(AC104433|pid:none) Oryza sativa chromosome 3 BAC OJ1... 32 8.9
M66236_1(M66236|pid:none) Bovine osteopontin (OPN) mRNA, complet... 32 8.9
>(Q86KL1) RecName: Full=Probable E3 ubiquitin-protein ligase bre1;
EC=6.3.2.-; &AC117070_5(AC117070|pid:none)
Length = 1080
Score = 182 bits (461), Expect = 4e-45
Identities = 96/112 (85%), Positives = 96/112 (85%)
Frame = +1
Query: 1 LNRNEEKLKSQGELMQKIEEKSNILQKQLSKVTEDLHSCSFDLEKHKRFVRENNAHSLEL 180
LNRNEEKLKSQGELMQKIEEKSNILQKQLSKVTEDLHSCSFDLEKHKRFVRENNAHSLEL
Sbjct: 882 LNRNEEKLKSQGELMQKIEEKSNILQKQLSKVTEDLHSCSFDLEKHKRFVRENNAHSLEL 941
Query: 181 KTQLDHLSNLNAELKKKADDSIFALEREIDKAXXXXXXXXXXXXXXXXATSA 336
KTQLDHLSNLNAELKKKADDSIFALEREIDKA ATSA
Sbjct: 942 KTQLDHLSNLNAELKKKADDSIFALEREIDKAKRLDEEKQLLKKKLEKATSA 993
Lambda K H
0.308 0.124 0.317
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 387,993,364
Number of extensions: 5710626
Number of successful extensions: 22019
Number of sequences better than 10.0: 270
Number of HSP's gapped: 21923
Number of HSP's successfully gapped: 281
Length of query: 138
Length of database: 1,040,966,779
Length adjustment: 102
Effective length of query: 36
Effective length of database: 714,129,709
Effective search space: 25708669524
Effective search space used: 25708669524
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 29 (15.8 bits)
|
| PSORT |
|
| VS (DIR, S) |
1 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |