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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U06387-1
Contig ID Contig-U06387-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U06387-1 (Contig-U06387-1Q) /CSM_Contig/Contig-U06387-1Q.Seq.d
GATGATTTCATTCAATCAATTATGTTATCAATTCATAAAGAGAAATTAGC
AACTGATGATACTGATGGATTACCACATACCTATATAATTTCACCAGATA
AAGGTTTAACCTATAAAGAAGCGATCATTTTCTTAAATGAAAAATTGAAT
AGAATGAAGCCACGTTTAAAATTACCCGCATCAATTTGTTTCCCGGCCAT
TAGAGTATTGGGATTGCTCATGTATTCATTTAGTAGTAGAAAACCCTTCC
TATTTAAAGCAGCAACTTTGTCAGCAATGGAAGAAGATCGTATCTATAGT
AATGAACGTGCAAAAAGAGAATTAGGTTTCAAACCACAATATACATTCAA
ACAAGGTTTAAATGTAACAATTGAAGAGTATTTAGAAAATGAAAGAATTG
GTTATTATTCAGTCTCACCATTATTTATTTTTACAACAATAGTTTTATTA
ATTATTAAATTTTTAATTTTAT
Gap no gap
Contig length 472
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 699961
End point 699489
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U06387
List of clone(s) 

est1=VSB581Z,1,473
Translated Amino Acid sequence 
DDFIQSIMLSIHKEKLATDDTDGLPHTYIISPDKGLTYKEAIIFLNEKLNRMKPRLKLPA
SICFPAIRVLGLLMYSFSSRKPFLFKAATLSAMEEDRIYSNERAKRELGFKPQYTFKQGL
NVTIEEYLENERIGYYSVSPLFIFTTIVLLIIKFLIL
Translated Amino Acid sequence (All Frames) 
Frame A:
DDFIQSIMLSIHKEKLATDDTDGLPHTYIISPDKGLTYKEAIIFLNEKLNRMKPRLKLPA
SICFPAIRVLGLLMYSFSSRKPFLFKAATLSAMEEDRIYSNERAKRELGFKPQYTFKQGL
NVTIEEYLENERIGYYSVSPLFIFTTIVLLIIKFLIL


Frame B:
misfnqlcyqfikrn*qlmilmdyhipi*fhqikv*pikkrsfs*mkn*ie*shv*nyph
qfvsrpleywdcscihlvvenpsylkqqlcqqwkkivsivmnvqken*vsnhnihsnkv*
m*qlksi*kmkelviiqshhylflqq*fy*llnf*fy


Frame C:
*fhsinyvins*reisn**y*wittylynftr*rfnl*rsdhflk*kie*neatfkitri
nlfpgh*sigiahvfi***ktlpi*ssnfvsngrrsyl***tckkrirfqttiyiqtrfk
cnn*rvfrk*knwllfsltiiyfynnsfiny*ifnf
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06387-1 (Contig-U06387-1Q)
/CSM_Contig/Contig-U06387-1Q.Seq.d
         (472 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06387-1 (Contig-U06387-1Q) /CSM_Contig/Conti...   831  0.0
Contig-U10372-1 (Contig-U10372-1Q) /CSM_Contig/Conti...    36  0.033
Contig-U06548-1 (Contig-U06548-1Q) /CSM_Contig/Conti...    36  0.033
Contig-U13863-1 (Contig-U13863-1Q) /CSM_Contig/Conti...    34  0.13
Contig-U11126-1 (Contig-U11126-1Q) /CSM_Contig/Conti...    34  0.13
Contig-U10912-1 (Contig-U10912-1Q) /CSM_Contig/Conti...    34  0.13
Contig-U10056-1 (Contig-U10056-1Q) /CSM_Contig/Conti...    34  0.13
Contig-U02854-1 (Contig-U02854-1Q) /CSM_Contig/Conti...    34  0.13
Contig-U02155-1 (Contig-U02155-1Q) /CSM_Contig/Conti...    34  0.13
Contig-U14071-1 (Contig-U14071-1Q) /CSM_Contig/Conti...    32  0.51

>Contig-U06387-1 (Contig-U06387-1Q) /CSM_Contig/Contig-U06387-1Q.Seq.d
          Length = 472

 Score =  831 bits (419), Expect = 0.0
 Identities = 419/419 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatgatttcattcaatcaattatgttatcaattcataaagagaaattagcaactgatgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gatgatttcattcaatcaattatgttatcaattcataaagagaaattagcaactgatgat 60

                                                                       
Query: 61  actgatggattaccacatacctatataatttcaccagataaaggtttaacctataaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  actgatggattaccacatacctatataatttcaccagataaaggtttaacctataaagaa 120

                                                                       
Query: 121 gcgatcattttcttaaatgaaaaattgaatagaatgaagccacgtttaaaattacccgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcgatcattttcttaaatgaaaaattgaatagaatgaagccacgtttaaaattacccgca 180

                                                                       
Query: 181 tcaatttgtttcccggccattagagtattgggattgctcatgtattcatttagtagtaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcaatttgtttcccggccattagagtattgggattgctcatgtattcatttagtagtaga 240

                                                                       
Query: 241 aaacccttcctatttaaagcagcaactttgtcagcaatggaagaagatcgtatctatagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaacccttcctatttaaagcagcaactttgtcagcaatggaagaagatcgtatctatagt 300

                                                                       
Query: 301 aatgaacgtgcaaaaagagaattaggtttcaaaccacaatatacattcaaacaaggttta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aatgaacgtgcaaaaagagaattaggtttcaaaccacaatatacattcaaacaaggttta 360

                                                                      
Query: 361 aatgtaacaattgaagagtatttagaaaatgaaagaattggttattattcagtctcacc 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aatgtaacaattgaagagtatttagaaaatgaaagaattggttattattcagtctcacc 419


>Contig-U10372-1 (Contig-U10372-1Q) /CSM_Contig/Contig-U10372-1Q.Seq.d
          Length = 544

 Score = 36.2 bits (18), Expect = 0.033
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 44  aattagcaactgatgata 61
           ||||||||||||||||||
Sbjct: 345 aattagcaactgatgata 362


>Contig-U06548-1 (Contig-U06548-1Q) /CSM_Contig/Contig-U06548-1Q.Seq.d
          Length = 788

 Score = 36.2 bits (18), Expect = 0.033
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 88  atttcaccagataaaggtttaa 109
           ||||||||||||||| ||||||
Sbjct: 498 atttcaccagataaacgtttaa 519


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4932
Number of Sequences: 6905
Number of extensions: 4932
Number of successful extensions: 483
Number of sequences better than 10.0: 169
length of query: 472
length of database: 5,674,871
effective HSP length: 16
effective length of query: 456
effective length of database: 5,564,391
effective search space: 2537362296
effective search space used: 2537362296
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11. 8
Homology vs DNA 
Query= Contig-U06387-1 (Contig-U06387-1Q) /CSM_Contig/Contig-U06387-1Q.Seq.d
         (472 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU262110) Dictyostelium discoideum vegetative cDNA clone:VS...   795   0.0    1
(AF146793) Mus musculus Neuromedin U precursor (Nmu) gene, p...    48   0.28   1
(AC147239) Mus musculus BAC clone RP23-386C10 from chromosom...    48   0.28   1
(AC124468) Mus musculus BAC clone RP24-165F16 from chromosom...    48   0.28   1
(EI685660) SB_BBd22-F04.F SB_BBd Sorghum bicolor genomic 5',...    46   1.1    1
(ED375724) AUAC-aas27e04.g1 Ascaris suum whole genome shotgu...    34   2.9    2
(BX950859) Zebrafish DNA sequence from clone CH211-134M1 in ...    44   4.4    1
(AC114561) Mus musculus chromosome 6, clone RP23-54F12, comp...    44   4.4    1
(AC113206) Mus musculus chromosome 6, clone RP23-320B19, com...    44   4.4    1
(AP009792) Lotus japonicus genomic DNA, clone: LjT42M11, TM2...    44   4.4    1
(AC161076) Bos taurus clone CH240-77F13, WORKING DRAFT SEQUE...    44   4.4    1
(AC224710) Bos taurus clone CH240-478G17, WORKING DRAFT SEQU...    44   4.4    1
(AC180678) Strongylocentrotus purpuratus clone R3-3087O14, W...    44   4.4    1
(AC166303) Bos taurus clone CH240-173O1, WORKING DRAFT SEQUE...    44   4.4    1
(CC565344) CH240_478G17.TARBAC13P2 CHORI-240 Bos taurus geno...    44   4.4    1
(DW237330) GH_RTMF_11R_G04_InvR_30Aug04_020_R Root (free) - ...    44   4.4    1
(CB463941) 725121 MARC 6BOV Bos taurus cDNA 3', mRNA sequence.     44   4.4    1
(CP000612) Desulfotomaculum reducens MI-1, complete genome.        44   4.4    1
(AC146912) Homo sapiens chromosome 5 clone CTC-801B8, WORKIN...    36   4.5    3
(AC147177) Xenopus tropicalis clone CH216-5M3, complete sequ...    36   4.5    3
(CU137681) Zebrafish DNA sequence from clone DKEY-193D10 in ...    38   4.9    3
(FH370390) CHO_OF4481xk21f1.ab1 CHO_OF4 Nicotiana tabacum ge...    36   5.9    2
(EI928122) VUH2-48B13TR VUUBBa (VUH2) Vigna unguiculata geno...    38   7.2    2

>(AU262110) Dictyostelium discoideum vegetative cDNA clone:VSB581,
           3' end single read.
          Length = 473

 Score =  795 bits (401), Expect = 0.0
 Identities = 401/401 (100%)
 Strand = Plus / Plus


Query: 1   gatgatttcattcaatcaattatgttatcaattcataaagagaaattagcaactgatgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gatgatttcattcaatcaattatgttatcaattcataaagagaaattagcaactgatgat 60


Query: 61  actgatggattaccacatacctatataatttcaccagataaaggtttaacctataaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  actgatggattaccacatacctatataatttcaccagataaaggtttaacctataaagaa 120


Query: 121 gcgatcattttcttaaatgaaaaattgaatagaatgaagccacgtttaaaattacccgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcgatcattttcttaaatgaaaaattgaatagaatgaagccacgtttaaaattacccgca 180


Query: 181 tcaatttgtttcccggccattagagtattgggattgctcatgtattcatttagtagtaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcaatttgtttcccggccattagagtattgggattgctcatgtattcatttagtagtaga 240


Query: 241 aaacccttcctatttaaagcagcaactttgtcagcaatggaagaagatcgtatctatagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaacccttcctatttaaagcagcaactttgtcagcaatggaagaagatcgtatctatagt 300


Query: 301 aatgaacgtgcaaaaagagaattaggtttcaaaccacaatatacattcaaacaaggttta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aatgaacgtgcaaaaagagaattaggtttcaaaccacaatatacattcaaacaaggttta 360


Query: 361 aatgtaacaattgaagagtatttagaaaatgaaagaattgg 401
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aatgtaacaattgaagagtatttagaaaatgaaagaattgg 401

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 491,200,078
Number of extensions: 28354423
Number of successful extensions: 2132043
Number of sequences better than 10.0: 23
Length of query: 472
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 449
Effective length of database: 93,106,754,628
Effective search space: 41804932827972
Effective search space used: 41804932827972
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 6.21
Homology vs Protein 
Query= Contig-U06387-1 (Contig-U06387-1Q) /CSM_Contig/Contig-U06387-1Q.Seq.d
         (472 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU965564_1(EU965564|pid:none) Zea mays clone 286971 sterol-4-alp...    48   1e-04
AC133932_10(AC133932|pid:none) Oryza sativa chromosome 3 BAC OSJ...    46   4e-04
AY883421_18(AY883421|pid:none) Geobacillus tepidamans strain GS5...    41   0.012
CP000764_895(CP000764|pid:none) Bacillus cereus subsp. cytotoxis...    41   0.015
BX936398_1970(BX936398|pid:none) Yersinia pseudotuberculosis IP3...    41   0.015
AE009951_326(AE009951|pid:none) Fusobacterium nucleatum subsp. n...    41   0.015
AD0241(AD0241) probable dehydrogenase YPO1979 [imported] - Yersi...    40   0.020
AF328862_11(AF328862|pid:none) Geobacillus stearothermophilus st...    40   0.020
CP000656_2057(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c...    40   0.026
BC088699_1(BC088699|pid:none) Xenopus laevis hypothetical LOC496...    40   0.026
CP000553_856(CP000553|pid:none) Prochlorococcus marinus str. NAT...    40   0.026
AP009389_2578(AP009389|pid:none) Pelotomaculum thermopropionicum...    39   0.044
BX571874_199(BX571874|pid:none) Photorhabdus luminescens subsp. ...    39   0.058
EU294175_1(EU294175|pid:none) Escherichia coli serogroup O58 O a...    39   0.058
EU296418_1(EU296418|pid:none) Shigella boydii type 2 O-antigen g...    39   0.058
AY948196_1(AY948196|pid:none) Shigella boydii serogroup 18 O ant...    39   0.058
EF085018_1(EF085018|pid:none) Picea sitchensis clone WS02729_H06...    39   0.058
EU694096_1(EU694096|pid:none) Escherichia coli serogroup O117 O ...    39   0.058
EU294174_1(EU294174|pid:none) Shigella dysenteriae O antigen gen...    39   0.058
EU694095_1(EU694095|pid:none) Escherichia coli serogroup O107 O ...    39   0.058
AF529080_2(AF529080|pid:none) Escherichia coli serotype O26:K60:...    39   0.058
BX950851_106(BX950851|pid:none) Erwinia carotovora subsp. atrose...    39   0.058
AY529126_1(AY529126|pid:none) Shigella boydii serotype 11 O-anti...    39   0.076
EU118168_2(EU118168|pid:none) Shigella flexneri strain IB1833 O-...    39   0.076
AP006627_3679(AP006627|pid:none) Bacillus clausii KSM-K16 DNA, c...    38   0.099
CP000800_2223(CP000800|pid:none) Escherichia coli E24377A, compl...    38   0.099
EU294178_2(EU294178|pid:none) Shigella dysenteriae O antigen gen...    38   0.099
DQ109552_1(DQ109552|pid:none) Escherichia coli O139 O-antigen ge...    38   0.099
CP000243_2270(CP000243|pid:none) Escherichia coli UTI89, complet...    38   0.099
CP000020_161(CP000020|pid:none) Vibrio fischeri ES114 chromosome...    38   0.099
CP001103_985(CP001103|pid:none) Alteromonas macleodii 'Deep ecot...    38   0.099
EU294168_1(EU294168|pid:none) Escherichia coli serotype O150 O a...    38   0.099
CP001111_503(CP001111|pid:none) Stenotrophomonas maltophilia R55...    38   0.099
DQ069297_1(DQ069297|pid:none) Escherichia coli serogroup O66 O a...    38   0.13
CP000284_2004(CP000284|pid:none) Methylobacillus flagellatus KT,...    38   0.13
DQ868765_1(DQ868765|pid:none) Escherichia coli serogroup O141 O-...    38   0.13
EU294171_1(EU294171|pid:none) Escherichia coli serotype O105 O a...    38   0.13
CP000468_1942(CP000468|pid:none) Escherichia coli APEC O1, compl...    38   0.13
CP001390_1849(CP001390|pid:none) Geobacter sp. FRC-32, complete ...    38   0.13
AM039952_3709(AM039952|pid:none) Xanthomonas campestris pv. vesi...    38   0.13
AP008229_720(AP008229|pid:none) Xanthomonas oryzae pv. oryzae MA...    37   0.17
CP000148_2448(CP000148|pid:none) Geobacter metallireducens GS-15...    37   0.17
AM236080_4005(AM236080|pid:none) Rhizobium leguminosarum bv. vic...    37   0.17
AE017180_2352(AE017180|pid:none) Geobacter sulfurreducens PCA, c...    37   0.17
AY568960_2(AY568960|pid:none) Escherichia coli serotype O4:K3:H5...    37   0.17
CP000381_64(CP000381|pid:none) Neisseria meningitidis 053442, co...    37   0.17
(B0RVL0) RecName: Full=dTDP-glucose 4,6-dehydratase;          EC...    37   0.17
CP000448_693(CP000448|pid:none) Syntrophomonas wolfei subsp. wol...    37   0.17
CP000758_2698(CP000758|pid:none) Ochrobactrum anthropi ATCC 4918...    37   0.17
AB041266_11(AB041266|pid:none) Actinobacillus actinomycetemcomit...    37   0.22
AY035396_1(AY035396|pid:none) Escherichia coli O91 O-antigen gen...    37   0.22
CU463050_10(CU463050|pid:none) Escherichia coli strain S88, geno...    37   0.22
AB490074_2(AB490074|pid:none) Escherichia coli B wbb operon gene...    37   0.22
CP000266_1936(CP000266|pid:none) Shigella flexneri 5 str. 8401, ...    37   0.22
EU296424_1(EU296424|pid:none) Escherichia coli serogroup O129 O-...    37   0.22
AB002668_6(AB002668|pid:none) Actinobacillus actinomycetemcomita...    37   0.22
AB030032_6(AB030032|pid:none) Actinobacillus actinomycetemcomita...    37   0.22
(P55293) RecName: Full=dTDP-glucose 4,6-dehydratase;          EC...    37   0.22
AE008923_3536(AE008923|pid:none) Xanthomonas axonopodis pv. citr...    37   0.22
CP000613_794(CP000613|pid:none) Rhodospirillum centenum SW, comp...    37   0.22
AF213680_1(AF213680|pid:none) Actinobacillus actinomycetemcomita...    37   0.22
S41534(S41534;B55213) dTDPglucose 4,6-dehydratase (EC 4.2.1.46) ...    37   0.22
AF279619_1(AF279619|pid:none) Salmonella enterica isolate M1952 ...    37   0.22
CP000686_127(CP000686|pid:none) Roseiflexus sp. RS-1, complete g...    37   0.29
CP000352_2722(CP000352|pid:none) Ralstonia metallidurans CH34, c...    37   0.29
AY956411_5(AY956411|pid:none) Stenotrophomonas maltophilia phosp...    37   0.29
CP001600_92(CP001600|pid:none) Edwardsiella ictaluri 93-146, com...    37   0.29
CP000885_3636(CP000885|pid:none) Clostridium phytofermentans ISD...    36   0.38
CP001074_3683(CP001074|pid:none) Rhizobium etli CIAT 652, comple...    36   0.38
EU076546_2(EU076546|pid:none) Enterobacter sakazakii strain NCTC...    36   0.38
CU861906_686(CU861906|pid:none) Ralstonia solanacearum strain Mo...    36   0.38
CP000050_3561(CP000050|pid:none) Xanthomonas campestris pv. camp...    36   0.38
CP000860_1616(CP000860|pid:none) Candidatus Desulforudis audaxvi...    36   0.38
AY532664_1(AY532664|pid:none) Escherichia coli serotype O103 O-a...    36   0.38
CP000232_161(CP000232|pid:none) Moorella thermoacetica ATCC 3907...    36   0.38
(P0C7J0) RecName: Full=dTDP-glucose 4,6-dehydratase;          EC...    36   0.38
AL646052_682(AL646052|pid:none) Ralstonia solanacearum GMI1000 c...    36   0.38
EU076545_2(EU076545|pid:none) Enterobacter sakazakii strain NCTC...    36   0.38
CP001068_624(CP001068|pid:none) Ralstonia pickettii 12J chromoso...    36   0.38
CP000075_925(CP000075|pid:none) Pseudomonas syringae pv. syringa...    36   0.38
AE017194_1330(AE017194|pid:none) Bacillus cereus ATCC 10987, com...    36   0.49
CP000301_4132(CP000301|pid:none) Rhodopseudomonas palustris BisB...    36   0.49
AE016879_1130(AE016879|pid:none) Bacillus anthracis str. Ames, c...    36   0.49
AP009385_632(AP009385|pid:none) Burkholderia multivorans ATCC 17...    36   0.49
CR522870_45(CR522870|pid:none) Desulfotalea psychrophila LSv54 c...    36   0.49
CP000282_2109(CP000282|pid:none) Saccharophagus degradans 2-40, ...    36   0.49
AJ248286_233(AJ248286|pid:none) Pyrococcus abyssi complete genom...    36   0.49
CP001124_3308(CP001124|pid:none) Geobacter bemidjiensis Bem, com...    36   0.49
AE017355_1094(AE017355|pid:none) Bacillus thuringiensis serovar ...    36   0.49
CP000227_1183(CP000227|pid:none) Bacillus cereus Q1, complete ge...    36   0.49
(P37759) RecName: Full=dTDP-glucose 4,6-dehydratase;          EC...    36   0.49
CP000576_1427(CP000576|pid:none) Prochlorococcus marinus str. MI...    36   0.49
CP000698_3214(CP000698|pid:none) Geobacter uraniireducens Rf4, c...    36   0.49
CP001283_1210(CP001283|pid:none) Bacillus cereus AH820, complete...    36   0.49
CP000383_3336(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334...    35   0.64
CP000716_497(CP000716|pid:none) Thermosipho melanesiensis BI429,...    35   0.64
CP001091_1471(CP001091|pid:none) Actinobacillus pleuropneumoniae...    35   0.64
CP000958_839(CP000958|pid:none) Burkholderia cenocepacia MC0-3 c...    35   0.64
CP000746_814(CP000746|pid:none) Actinobacillus succinogenes 130Z...    35   0.64
CP000859_2187(CP000859|pid:none) Desulfococcus oleovorans Hxd3, ...    35   0.64
FM209186_5553(FM209186|pid:none) Pseudomonas aeruginosa LESB58 c...    35   0.64
AY238998_1(AY238998|pid:none) Vibrio cholerae isolate 929-93 dTD...    35   0.64
CP000783_1136(CP000783|pid:none) Enterobacter sakazakii ATCC BAA...    35   0.64
CP000270_657(CP000270|pid:none) Burkholderia xenovorans LB400 ch...    35   0.64
AE004091_5157(AE004091|pid:none) Pseudomonas aeruginosa PAO1, co...    35   0.64
BA000002_783(BA000002|pid:none) Aeropyrum pernix K1 DNA, complet...    35   0.64
CP000378_385(CP000378|pid:none) Burkholderia cenocepacia AU 1054...    35   0.64
CP000822_124(CP000822|pid:none) Citrobacter koseri ATCC BAA-895,...    35   0.84
AJ544861_9(AJ544861|pid:none) Thermotoga sp strain RQ2 rhamnose ...    35   0.84
AE000666_1746(AE000666|pid:none) Methanothermobacter thermautotr...    35   0.84
AE014613_732(AE014613|pid:none) Salmonella enterica subsp. enter...    35   0.84
AY239000_3(AY239000|pid:none) Vibrio cholerae isolate S6535 HldD...    35   0.84
AC1210(AC1210) dTDP-D-glucose 4,6-dehydratase homolog lmo1083 [i...    35   0.84
CP001127_2177(CP001127|pid:none) Salmonella enterica subsp. ente...    35   0.84
AY239002_1(AY239002|pid:none) Vibrio cholerae isolate 327-93 dTD...    35   0.84
CP000614_3180(CP000614|pid:none) Burkholderia vietnamiensis G4 c...    35   0.84
AF165818_128(AF165818|pid:none) Guillardia theta nucleomorph chr...    35   0.84
AY596297_889(AY596297|pid:none) Haloarcula marismortui ATCC 4304...    35   0.84
AF279615_1(AF279615|pid:none) Salmonella enterica isolate M1635 ...    35   0.84
CP001138_2076(CP001138|pid:none) Salmonella enterica subsp. ente...    35   0.84
CP001101_1843(CP001101|pid:none) Chlorobium phaeobacteroides BS1...    35   0.84
EU805803_1(EU805803|pid:none) Salmonella enterica subsp. enteric...    35   0.84
CP000678_1309(CP000678|pid:none) Methanobrevibacter smithii ATCC...    35   0.84
CP001339_2081(CP001339|pid:none) Thioalkalivibrio sp. HL-EbGR7, ...    35   0.84
CP000529_3461(CP000529|pid:none) Polaromonas naphthalenivorans C...    35   0.84
CP001503_707(CP001503|pid:none) Burkholderia glumae BGR1 chromos...    35   1.1
AM167904_1238(AM167904|pid:none) Bordetella avium 197N complete ...    35   1.1
CP000283_1568(CP000283|pid:none) Rhodopseudomonas palustris BisB...    35   1.1
CP000653_2630(CP000653|pid:none) Enterobacter sp. 638, complete ...    35   1.1
CP000685_352(CP000685|pid:none) Flavobacterium johnsoniae UW101,...    35   1.1
CP000103_263(CP000103|pid:none) Nitrosospira multiformis ATCC 25...    35   1.1
AF279622_1(AF279622|pid:none) Salmonella enterica isolate M287 d...    35   1.1
CP000270_724(CP000270|pid:none) Burkholderia xenovorans LB400 ch...    35   1.1
AF279623_1(AF279623|pid:none) Salmonella enterica isolate M293 d...    35   1.1
CP000826_165(CP000826|pid:none) Serratia proteamaculans 568, com...    35   1.1
CP000539_531(CP000539|pid:none) Acidovorax sp. JS42, complete ge...    35   1.1
CP000884_1272(CP000884|pid:none) Delftia acidovorans SPH-1, comp...    35   1.1
BX950851_4179(BX950851|pid:none) Erwinia carotovora subsp. atros...    35   1.1
AE009952_359(AE009952|pid:none) Yersinia pestis KIM, complete ge...    34   1.4
AF0470(AF0470) dTDP-D-glucose-4,6-dehydratase [imported] - Yersi...    34   1.4
CT573071_1557(CT573071|pid:none) Kuenenia stuttgartiensis genome...    34   1.4
CP001099_1692(CP001099|pid:none) Chlorobaculum parvum NCIB 8327,...    34   1.4
CP001157_1539(CP001157|pid:none) Azotobacter vinelandii DJ, comp...    34   1.4
CP001229_681(CP001229|pid:none) Sulfurihydrogenibium azorense Az...    34   1.4
FJ830638_3(FJ830638|pid:none) Herbaspirillum seropedicae strain ...    34   1.4
CP001100_219(CP001100|pid:none) Chloroherpeton thalassium ATCC 3...    34   1.4
CP001025_754(CP001025|pid:none) Burkholderia ambifaria MC40-6 ch...    34   1.4
CP000931_1476(CP000931|pid:none) Shewanella halifaxensis HAW-EB4...    34   1.4
CP000851_1395(CP000851|pid:none) Shewanella pealeana ATCC 700345...    34   1.4
CP000926_1371(CP000926|pid:none) Pseudomonas putida GB-1, comple...    34   1.4
AF279621_1(AF279621|pid:none) Salmonella enterica isolate M285 d...    34   1.4
CP001089_1635(CP001089|pid:none) Geobacter lovleyi SZ, complete ...    34   1.4
CP000140_3519(CP000140|pid:none) Parabacteroides distasonis ATCC...    34   1.4
BT066876_1(BT066876|pid:none) Zea mays full-length cDNA clone ZM...    34   1.4
AE016825_4010(AE016825|pid:none) Chromobacterium violaceum ATCC ...    34   1.4
BX936398_172(BX936398|pid:none) Yersinia pseudotuberculosis IP32...    34   1.4
CR543861_71(CR543861|pid:none) Acinetobacter sp. ADP1 complete g...    34   1.4
CP000680_4261(CP000680|pid:none) Pseudomonas mendocina ymp, comp...    34   1.4
CP000879_913(CP000879|pid:none) Petrotoga mobilis SJ95, complete...    34   1.9
AE006468_3808(AE006468|pid:none) Salmonella enterica subsp. ente...    34   1.9
CP000510_3277(CP000510|pid:none) Psychromonas ingrahamii 37, com...    34   1.9
CP001176_1147(CP001176|pid:none) Bacillus cereus B4264, complete...    34   1.9
AE003849_255(AE003849|pid:none) Xylella fastidiosa 9a5c, complet...    34   1.9
AM933173_3400(AM933173|pid:none) Salmonella enterica subsp. ente...    34   1.9
CP001186_1112(CP001186|pid:none) Bacillus cereus G9842, complete...    34   1.9
BT053134_1(BT053134|pid:none) Medicago truncatula clone MTYFL_FM...    34   1.9
CP000909_1567(CP000909|pid:none) Chloroflexus aurantiacus J-10-f...    34   1.9
CP000875_1235(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ...    34   1.9
CP001338_333(CP001338|pid:none) Candidatus Methanosphaerula palu...    34   1.9
CP000667_2188(CP000667|pid:none) Salinispora tropica CNB-440, co...    34   1.9
AM933172_3712(AM933172|pid:none) Salmonella enterica subsp. ente...    34   1.9
CP000667_2211(CP000667|pid:none) Salinispora tropica CNB-440, co...    34   1.9
CP001113_3931(CP001113|pid:none) Salmonella enterica subsp. ente...    34   1.9
AE015451_1771(AE015451|pid:none) Pseudomonas putida KT2440 compl...    34   1.9
CP000026_3505(CP000026|pid:none) Salmonella enterica subsp. ente...    34   1.9
CP000319_2898(CP000319|pid:none) Nitrobacter hamburgensis X14, c...    34   1.9
CP000886_4727(CP000886|pid:none) Salmonella enterica subsp. ente...    34   1.9
CP000453_2298(CP000453|pid:none) Alkalilimnicola ehrlichii MLHE-...    34   1.9
CP000628_2809(CP000628|pid:none) Agrobacterium radiobacter K84 c...    34   1.9
BC106482_1(BC106482|pid:none) Xenopus laevis hypothetical protei...    34   1.9
DQ676934_1(DQ676934|pid:none) Escherichia coli strain CB9827 ser...    33   2.4
CU928160_3845(CU928160|pid:none) Escherichia coli IAI1 chromosom...    33   2.4
EU892458_1(EU892458|pid:none) Escherichia coli strain TB182A glu...    33   2.4
AY238996_1(AY238996|pid:none) Vibrio cholerae isolate 511-93 dTD...    33   2.4
CP000812_309(CP000812|pid:none) Thermotoga lettingae TMO, comple...    33   2.4
CP000247_3945(CP000247|pid:none) Escherichia coli 536, complete ...    33   2.4
CP000903_1104(CP000903|pid:none) Bacillus weihenstephanensis KBA...    33   2.4
CP000248_3221(CP000248|pid:none) Novosphingobium aromaticivorans...    33   2.4
AY238994_1(AY238994|pid:none) Vibrio cholerae isolate B8645-64 d...    33   2.4
CP000076_299(CP000076|pid:none) Pseudomonas fluorescens Pf-5, co...    33   2.4
FM180568_4089(FM180568|pid:none) Escherichia coli 0127:H6 E2348/...    33   2.4
CP000739_1216(CP000739|pid:none) Sinorhizobium medicae WSM419 pl...    33   2.4
CP001349_5299(CP001349|pid:none) Methylobacterium nodulans ORS 2...    33   2.4
A91219(A91219) dTDP-glucose 4,6-dehydratase [imported] - Escheri...    33   2.4
AE014075_4610(AE014075|pid:none) Escherichia coli CFT073, comple...    33   2.4
CP000096_415(CP000096|pid:none) Pelodictyon luteolum DSM 273, co...    33   2.4
CP001349_4157(CP001349|pid:none) Methylobacterium nodulans ORS 2...    33   2.4
CP000361_646(CP000361|pid:none) Arcobacter butzleri RM4018, comp...    33   2.4
CP000304_84(CP000304|pid:none) Pseudomonas stutzeri A1501, compl...    33   2.4
CP000243_4255(CP000243|pid:none) Escherichia coli UTI89, complet...    33   2.4
CP000607_464(CP000607|pid:none) Chlorobium phaeovibrioides DSM 2...    33   2.4
AP009240_4071(AP009240|pid:none) Escherichia coli SE11 DNA, comp...    33   2.4
DQ676933_1(DQ676933|pid:none) Escherichia coli strain 43w serogr...    33   2.4
CP000800_4100(CP000800|pid:none) Escherichia coli E24377A, compl...    33   2.4
AE005674_3864(AE005674|pid:none) Shigella flexneri 2a str. 301, ...    33   2.4
CU928163_4220(CU928163|pid:none) Escherichia coli UMN026 chromos...    33   2.4
(P27830) RecName: Full=dTDP-glucose 4,6-dehydratase;          EC...    33   2.4
CP000390_2734(CP000390|pid:none) Mesorhizobium sp. BNC1, complet...    33   2.4
CP000036_3530(CP000036|pid:none) Shigella boydii Sb227, complete...    33   2.4
CP000806_618(CP000806|pid:none) Cyanothece sp. ATCC 51142 circul...    33   2.4
CR555306_891(CR555306|pid:none) Azoarcus sp. EbN1 complete genome.     33   2.4
CP000614_789(CP000614|pid:none) Burkholderia vietnamiensis G4 ch...    33   2.4
AF279625_1(AF279625|pid:none) Salmonella enterica isolate M324 d...    33   2.4
CU928162_4355(CU928162|pid:none) Escherichia coli ED1a chromosom...    33   2.4
AF078135_26(AF078135|pid:none) Leptospira borgpetersenii lipopol...    33   3.2
CR626927_1488(CR626927|pid:none) Bacteroides fragilis NCTC 9343,...    33   3.2
CP000462_2830(CP000462|pid:none) Aeromonas hydrophila subsp. hyd...    33   3.2
CP001281_2076(CP001281|pid:none) Thauera sp. MZ1T, complete geno...    33   3.2
CP001074_832(CP001074|pid:none) Rhizobium etli CIAT 652, complet...    33   3.2
CP000481_413(CP000481|pid:none) Acidothermus cellulolyticus 11B ...    33   3.2
AE015928_466(AE015928|pid:none) Bacteroides thetaiotaomicron VPI...    33   3.2
CP000949_1411(CP000949|pid:none) Pseudomonas putida W619, comple...    33   3.2
CP001108_1675(CP001108|pid:none) Prosthecochloris aestuarii DSM ...    33   3.2
AL954747_469(AL954747|pid:none) Nitrosomonas europaea ATCC 19718...    33   3.2
CP001229_355(CP001229|pid:none) Sulfurihydrogenibium azorense Az...    33   3.2
CP000155_2386(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...    33   3.2
A87152(A87152) probable cholesterol dehydrogenase [imported] - M...    33   3.2
CP000232_729(CP000232|pid:none) Moorella thermoacetica ATCC 3907...    33   3.2
CP000804_361(CP000804|pid:none) Roseiflexus castenholzii DSM 139...    33   3.2
CP000916_33(CP000916|pid:none) Thermotoga neapolitana DSM 4359, ...    33   3.2
BA000040_593(BA000040|pid:none) Bradyrhizobium japonicum USDA 11...    33   3.2
CP000774_3288(CP000774|pid:none) Parvibaculum lavamentivorans DS...    33   3.2
CP000133_1495(CP000133|pid:none) Rhizobium etli CFN 42, complete...    33   4.2
CP000056_714(CP000056|pid:none) Streptococcus pyogenes MGAS6180,...    33   4.2
AE016830_2039(AE016830|pid:none) Enterococcus faecalis V583, com...    33   4.2
FP236842_189(FP236842|pid:none) Erwinia pyrifoliae strain Ep1/96...    33   4.2
CP000086_1455(CP000086|pid:none) Burkholderia thailandensis E264...    33   4.2
EF138834_24(EF138834|pid:none) Lactobacillus johnsonii strain AT...    33   4.2
AM920434_33(AM920434|pid:none) Penicillium chrysogenum Wisconsin...    33   4.2
CP000465_19(CP000465|pid:none) Roseobacter denitrificans OCh 114...    33   4.2
(P44914) RecName: Full=dTDP-glucose 4,6-dehydratase;          EC...    33   4.2
AB2409(AB2409) dTDP-glucose dehydratase [imported] - Nostoc sp. ...    33   4.2
AY028370_2(AY028370|pid:none) Burkholderia mallei putative diade...    33   4.2
AF479753_2(AF479753|pid:none) Lactobacillus gasseri strain ADH r...    33   4.2
(Q9S642) RecName: Full=dTDP-glucose 4,6-dehydratase;          EC...    33   4.2
BA000031_222(BA000031|pid:none) Vibrio parahaemolyticus RIMD 221...    33   4.2
Y15903_3(Y15903|pid:none) Streptococcus agalactiae hylB gene and...    33   4.2
CP001392_544(CP001392|pid:none) Diaphorobacter sp. TPSY, complet...    33   4.2
FM178379_3017(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ...    33   4.2
AM236080_1633(AM236080|pid:none) Rhizobium leguminosarum bv. vic...    33   4.2
AM286415_167(AM286415|pid:none) Yersinia enterocolitica subsp. e...    33   4.2
AF064070_4(AF064070|pid:none) Burkholderia pseudomallei putative...    33   4.2
AP008232_2381(AP008232|pid:none) Sodalis glossinidius str. 'mors...    33   4.2
CP000681_2525(CP000681|pid:none) Shewanella putrefaciens CN-32, ...    33   4.2
CP000017_735(CP000017|pid:none) Streptococcus pyogenes MGAS5005,...    33   4.2
CP000254_2978(CP000254|pid:none) Methanospirillum hungatei JF-1,...    33   4.2
CP000526_907(CP000526|pid:none) Burkholderia mallei SAVP1 chromo...    33   4.2
CP000259_794(CP000259|pid:none) Streptococcus pyogenes MGAS9429,...    33   4.2
EU966218_1(EU966218|pid:none) Zea mays clone 292650 unknown mRNA.      33   4.2
EU274663_1(EU274663|pid:none) Aeromonas hydrophila strain AH-3 s...    33   4.2
D78182_6(D78182|pid:none) Streptococcus mutans DNA for dTDP-rham...    32   5.4
AY177616_1(AY177616|pid:none) Chlamydomonas reinhardtii 41 kDa r...    32   5.4
CU458896_1329(CU458896|pid:none) Mycobacterium abscessus chromos...    32   5.4
AE014299_3101(AE014299|pid:none) Shewanella oneidensis MR-1, com...    32   5.4
CP000503_1452(CP000503|pid:none) Shewanella sp. W3-18-1, complet...    32   5.4
CP000252_2612(CP000252|pid:none) Syntrophus aciditrophicus SB, c...    32   5.4
CP000934_3365(CP000934|pid:none) Cellvibrio japonicus Ueda107, c...    32   5.4
CP000282_2127(CP000282|pid:none) Saccharophagus degradans 2-40, ...    32   5.4
(P95780) RecName: Full=dTDP-glucose 4,6-dehydratase;          EC...    32   5.4
AY771223_1(AY771223|pid:none) Escherichia coli O45 O antigen gen...    32   5.4
G65182(G65182;S30682)dTDPglucose 4,6-dehydratase (EC 4.2.1.46) -...    32   5.4
CP000949_1396(CP000949|pid:none) Pseudomonas putida W619, comple...    32   5.4
CP001096_120(CP001096|pid:none) Rhodopseudomonas palustris TIE-1...    32   5.4
CP000821_107(CP000821|pid:none) Shewanella sediminis HAW-EB3, co...    32   5.4
CP000103_166(CP000103|pid:none) Nitrosospira multiformis ATCC 25...    32   6.9
CP000155_2297(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...    32   7.1
CP000687_1443(CP000687|pid:none) Actinobacillus pleuropneumoniae...    32   7.1
FP236842_1399(FP236842|pid:none) Erwinia pyrifoliae strain Ep1/9...    32   7.1
CP000924_1597(CP000924|pid:none) Thermoanaerobacter pseudethanol...    32   7.1
CP001252_1435(CP001252|pid:none) Shewanella baltica OS223, compl...    32   7.1
AM778929_14(AM778929|pid:none) Microcystis aeruginosa PCC 7806 g...    32   7.1
CP001101_1838(CP001101|pid:none) Chlorobium phaeobacteroides BS1...    32   7.1
CP000834_39(CP000834|pid:none) Dinoroseobacter shibae DFL 12 pla...    32   7.1
CP000647_2448(CP000647|pid:none) Klebsiella pneumoniae subsp. pn...    32   7.1
T29914(T29914)hypothetical protein ZC449.6 - Caenorhabditis eleg...    32   7.1
AE000782_318(AE000782|pid:none) Archaeoglobus fulgidus DSM 4304,...    32   7.1
CP000802_2069(CP000802|pid:none) Escherichia coli HS, complete g...    32   7.1
BA000016_619(BA000016|pid:none) Clostridium perfringens str. 13 ...    32   7.1
(P39630) RecName: Full=Spore coat polysaccharide biosynthesis pr...    32   7.1
CP000647_2454(CP000647|pid:none) Klebsiella pneumoniae subsp. pn...    32   7.1
CU633899_403(CU633899|pid:none) Podospora anserina genomic DNA c...    32   7.1
CP000246_462(CP000246|pid:none) Clostridium perfringens ATCC 131...    32   7.1
CP000478_2242(CP000478|pid:none) Syntrophobacter fumaroxidans MP...    32   7.1
AF187532_10(AF187532|pid:none) Streptomyces nogalater SnoN (snoN...    32   7.1
AM286690_910(AM286690|pid:none) Alcanivorax borkumensis SK2, com...    32   9.3
CP000721_4671(CP000721|pid:none) Clostridium beijerinckii NCIMB ...    32   9.3
AF521878_8(AF521878|pid:none) Streptomyces narbonensis desosamin...    32   9.3
AE004969_1740(AE004969|pid:none) Neisseria gonorrhoeae FA 1090, ...    32   9.3
CP000817_1124(CP000817|pid:none) Lysinibacillus sphaericus C3-41...    32   9.3
CP000606_1397(CP000606|pid:none) Shewanella loihica PV-4, comple...    32   9.3
AM889123_2(AM889123|pid:none) Streptomyces olivaceus NDP-L-rhamn...    32   9.3
(P37761) RecName: Full=dTDP-glucose 4,6-dehydratase;          EC...    32   9.3
AF097519_1(AF097519|pid:none) Klebsiella pneumoniae dTDP-D-gluco...    32   9.3
CP000447_2807(CP000447|pid:none) Shewanella frigidimarina NCIMB ...    32   9.3
CP001230_1598(CP001230|pid:none) Persephonella marina EX-H1, com...    32   9.3
AM270048_35(AM270048|pid:none) Aspergillus niger contig An03c007...    32   9.3
A95150(A95150) conserved hypothetical protein SP1290 [imported] ...    32   9.3
DQ232586_8(DQ232586|pid:none) Rhodobacter sphaeroides 2.4.1 plas...    32   9.3
CP001360_26(CP001360|pid:none) Brachyspira hyodysenteriae WA1 pl...    32   9.3
CP000702_85(CP000702|pid:none) Thermotoga petrophila RKU-1, comp...    32   9.3
CP000563_2836(CP000563|pid:none) Shewanella baltica OS155, compl...    32   9.3
CP001153_84(CP001153|pid:none) Rhodobacter sphaeroides KD131 pla...    32   9.3
CP000410_1080(CP000410|pid:none) Streptococcus pneumoniae D39, c...    32   9.3
AY217008_23(AY217008|pid:none) Sphingomonas elodea strain ATCC 3...    32   9.3
CP000231_50(CP000231|pid:none) Rhodospirillum rubrum ATCC 11170 ...    32   9.3
CP000423_1902(CP000423|pid:none) Lactobacillus casei ATCC 334, c...    32   9.3
CU466930_623(CU466930|pid:none) Candidatus Cloacamonas acidamino...    32   9.3
CP001615_1177(CP001615|pid:none) Exiguobacterium sp. AT1b, compl...    32   9.3
AM238664_487(AM238664|pid:none) Streptomyces ambofaciens ATCC 23...    32   9.3
BA000045_3235(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ...    32   9.3
FM954972_201(FM954972|pid:none) Vibrio splendidus LGP32 chromoso...    32   9.3

>EU965564_1(EU965564|pid:none) Zea mays clone 286971
           sterol-4-alpha-carboxylate 3-dehydrogenase,
           decarboxylating mRNA, complete cds.
          Length = 552

 Score = 47.8 bits (112), Expect = 1e-04
 Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
 Frame = +1

Query: 79  TYIISPDKGLTYKEAIIFLNEKLNRMKPRLKLPASICFPAIRVLGLLMYSFSS--RKPFL 252
           TY I+  + + + E +  + E L   +P +K+P S+  P   V+      F+    K
Sbjct: 254 TYFITNMEPIKFWEFMSLILEGLGYERPSVKIPVSVMMPVAHVVEWTYQKFAKYGMKVPQ 313

Query: 253 FKAATLSAMEEDRIYSNERAKRELGFKPQYTFKQGLNVTIEEYLENERIGYYSVS 417
              + +  +  +R +S  RAK +LG++P  + K G+  T+E Y   +   + S+S
Sbjct: 314 LTPSRIRLLSCNRTFSCSRAKEQLGYEPLVSLKDGVKRTVESYSHLQAQNHRSIS 368

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 606,535,882
Number of extensions: 10561683
Number of successful extensions: 25233
Number of sequences better than 10.0: 321
Number of HSP's gapped: 25228
Number of HSP's successfully gapped: 321
Length of query: 157
Length of database: 1,040,966,779
Length adjustment: 117
Effective length of query: 40
Effective length of database: 666,065,434
Effective search space: 26642617360
Effective search space used: 26642617360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.75  gvh: 0.29  alm: 0.15  top: 0.80  tms: 0.07  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.04  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: vesicles of secretory system
	 16.0 %: nuclear
	 12.0 %: Golgi
	 12.0 %: mitochondrial
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for Contig-U06387-1 is cyt
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0