| Contig-U06362-1 |
| Contig ID |
Contig-U06362-1 |
| Contig update |
2001. 8.30 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
812 |
| Chromosome number (1..6, M) |
2 |
| Chromosome length |
8467578 |
| Start point |
3074223 |
| End point |
3073411 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
2 |
| Number of EST |
2 |
| Link to clone list |
U06362 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11. 8 |
| Homology vs DNA |
Query= Contig-U06362-1 (Contig-U06362-1Q) /CSM_Contig/Contig-U06362-1Q.Seq.d
(812 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AU270694) Dictyostelium discoideum vegetative cDNA clone:VS... 1326 0.0 1
(AU261991) Dictyostelium discoideum vegetative cDNA clone:VS... 965 0.0 2
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 898 0.0 3
(AU270693) Dictyostelium discoideum vegetative cDNA clone:VS... 997 0.0 1
(AU267437) Dictyostelium discoideum vegetative cDNA clone:VS... 155 3e-33 1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 34 4e-04 12
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 38 6e-04 15
(U87145) Toxoplasma gondii chloroplast, complete genome. 52 7e-04 4
(AL049185) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 38 0.005 11
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 34 0.007 11
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3... 40 0.013 12
(CR954265) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 0.017 3
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 38 0.023 8
(AL844509) Plasmodium falciparum chromosome 13. 44 0.032 4
(BX004994) Zebrafish DNA sequence from clone DKEY-24J15 in l... 52 0.033 1
(AQ046671) RPCI11-42O20.TJ RPCI-11 Homo sapiens genomic clon... 52 0.033 1
(CK734647) TgESTzyk77f06.y1 TgRH Tachyzoite FL cDNA Toxoplas... 52 0.033 1
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 38 0.045 15
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 46 0.057 10
(BX004997) Zebrafish DNA sequence from clone DKEY-46E6 in li... 38 0.073 5
(AC189230) Brassica rapa subsp. pekinensis clone KBrB013J16,... 42 0.081 3
(EH721361) CNML7730.b1_C13.ab1 CNM(LMS) spotted knapweed Cen... 48 0.10 2
(CT025898) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 0.12 7
(AC188555) Pan troglodytes BAC clone CH251-349E22 from chrom... 40 0.13 6
(CR762472) Zebrafish DNA sequence from clone DKEY-75G19 in l... 50 0.13 1
(BX571706) Zebrafish DNA sequence from clone DKEYP-123H11 in... 50 0.13 1
(AL929044) Zebrafish DNA sequence from clone CH211-245D9 in ... 50 0.13 1
(FD573323) RS2EY11JQ RS2(RS) Raphanus sativus cDNA 3', mRNA ... 50 0.13 1
(FD569053) RS2EY11TF RS2(RS) Raphanus sativus cDNA 5', mRNA ... 50 0.13 1
(AE014851) Plasmodium falciparum 3D7 chromosome 12, section ... 38 0.14 6
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 46 0.15 6
(DY680174) TTDA587TO Tetrahymena thermophila EST library str... 44 0.19 2
(AL844507) Plasmodium falciparum chromosome 8. 46 0.23 3
(AC177719) Strongylocentrotus purpuratus clone R3-1011A6, WO... 48 0.24 5
(AC149046) Papio anubis clone RP41-152D17, WORKING DRAFT SEQ... 42 0.27 2
(AC012497) Homo sapiens BAC clone RP11-349I7 from 2, complet... 46 0.28 5
(AP007376) Lotus japonicus genomic DNA, chromosome 1, clone:... 34 0.28 7
(AC128025) Rattus norvegicus clone CH230-124G14, *** SEQUENC... 38 0.29 2
(AC095364) Rattus norvegicus clone CH230-1K2, *** SEQUENCING... 38 0.29 2
(DW555755) EST_ssal_rgb2_20174 rgb2 Salmo salar cDNA clone s... 44 0.29 2
(CP000395) Borrelia afzelii PKo, complete genome. 32 0.30 16
(DY727655) EST_ssal_rgb2_83394 ssalrgb2 mixed_tissue Salmo s... 44 0.30 2
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 36 0.30 7
(CU466383) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.30 6
(AC005140) Plasmodium falciparum chromosome 12 clone 3D7, **... 38 0.31 6
(EV837018) TT1DU60TV Tetrahymena thermophila SB210 cDNA libr... 44 0.31 2
(EY129857) CBTH2254.b1_L12.ab1:P Triphysaria pusilla root ti... 46 0.32 2
(AC193282) Colobus guereza clone CH272-142D12, WORKING DRAFT... 40 0.32 9
(EY132689) CBTH3680.b1_O08.ab1:P Triphysaria pusilla root ti... 46 0.33 2
(CB514064) ssalrgb548123 mixed_tissue Salmo salar cDNA, mRNA... 40 0.34 2
(DW576233) EST_ssal_rgb2_40652 rgb2 Salmo salar cDNA clone s... 40 0.34 2
(AM487484) Vitis vinifera, whole genome shotgun sequence, co... 36 0.35 5
(DY680173) TTDA587TG Tetrahymena thermophila EST library str... 44 0.35 2
(EY172449) CBTI3708.g1_G16.ab1:P Triphysaria pusilla root ti... 46 0.37 2
(DY680098) TTDA538TG Tetrahymena thermophila EST library str... 44 0.39 2
(AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8... 46 0.39 8
(EL505583) G12_599_603.AB1 Blood stage Plasmodium falciparum... 42 0.40 2
(AE014847) Plasmodium falciparum 3D7 chromosome 12, section ... 38 0.42 8
(AC006279) Plasmodium falciparum chromosome 12 clone 3D7, **... 38 0.42 9
(EV832698) FTSC954TF Tetrahymena thermophila SB210 cDNA libr... 44 0.42 2
(AC011292) Homo sapiens BAC clone RP11-69N1 from 7, complete... 36 0.44 6
(AL109814) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 38 0.44 5
(AP009674) Lotus japonicus genomic DNA, chromosome 1, clone:... 34 0.46 7
(AC122736) Mus musculus chromosome 7, clone RP23-272F2, comp... 42 0.47 3
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4... 36 0.47 6
(AC152054) Medicago truncatula clone mth2-13c11, WORKING DRA... 36 0.50 4
(CU571091) Zebrafish DNA sequence from clone DKEY-71B20 in l... 48 0.52 1
(AM484115) Vitis vinifera, whole genome shotgun sequence, co... 48 0.52 1
(AM478728) Vitis vinifera contig VV78X154946.13, whole genom... 48 0.52 1
(AM475473) Vitis vinifera contig VV78X208471.6, whole genome... 48 0.52 1
(AC202363) Medicago truncatula clone mth2-64j15, complete se... 48 0.52 1
(AC135605) Medicago truncatula clone mth2-7m1, complete sequ... 48 0.52 1
(AC124964) Medicago truncatula clone mth2-27c4, complete seq... 48 0.52 1
(AY463155) Dermatobia hominis mitochondrion, complete genome. 48 0.52 1
(AF151388) Dermatobia hominis tRNA-Ile gene, partial sequenc... 48 0.52 1
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6... 48 0.52 1
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4... 48 0.52 1
(AE014830) Plasmodium falciparum 3D7 chromosome 10 section 2... 48 0.52 1
(AC160689) Bos taurus clone CH240-93N12, WORKING DRAFT SEQUE... 48 0.52 1
(AC179416) Strongylocentrotus purpuratus clone R3-62D24, WOR... 48 0.52 1
(DX822942) GH_MBb0024D18f GH_MBb Gossypium hirsutum genomic ... 48 0.52 1
(DX491479) Cpl33300 Papaya Genomic DNA BAC Library Carica pa... 48 0.52 1
(CZ862269) OC__Ba0256D07.r OC__Ba Oryza coarctata genomic cl... 48 0.52 1
(CG951157) MBEAH85TF mth2 Medicago truncatula genomic clone ... 48 0.52 1
(EH733944) CNMM6720.b1_P23.ab1 CNM(LMS) spotted knapweed Cen... 48 0.52 1
(EB570034) AGENCOURT_51193583 D. virilis EST Drosophila viri... 48 0.52 1
(EB566595) AGENCOURT_51185902 D. virilis EST Drosophila viri... 48 0.52 1
(DY676776) TT1A116TH Tetrahymena thermophila EST library str... 48 0.52 1
(CX590426) TTE00024113 Amplicon Express - Conjugative Form T... 48 0.52 1
(CX587811) TTE00027338 Amplicon Express - Conjugative Form T... 48 0.52 1
(CV846672) ID0AEE15CH04RM1 ID0AEE Acyrthosiphon pisum cDNA c... 48 0.52 1
(CN920332) 000510AEAA003217HT (AEAA) Aotea expanding leaf Ma... 48 0.52 1
(CN910511) 030128ABLC005496HT (ABLC) Braeburn cell culture t... 48 0.52 1
(CJ816133) Triticum aestivum cDNA clone:whsct28d15, 3' end. 48 0.52 1
(CJ803313) Triticum aestivum cDNA clone:whsct28d15, 5' end. 48 0.52 1
(BQ625425) rd14f02.y1 Meloidogyne incognita egg SL1 TOPO v1 ... 48 0.52 1
(BM882205) rb27a07.y1 Meloidogyne incognita egg pAMP1 Bird M... 48 0.52 1
(T26205) T518 MVAT4 bloodstream form of serodeme WRATat1.1 T... 48 0.52 1
(FF578546) TTEDK77THB Tetrahymena thermophila conjugation cD... 48 0.52 1
(FF578174) TTEDC40THB Tetrahymena thermophila conjugation cD... 48 0.52 1
>(AU270694) Dictyostelium discoideum vegetative cDNA clone:VSK131,
3' end single read.
Length = 688
Score = 1326 bits (669), Expect = 0.0
Identities = 669/669 (100%)
Strand = Plus / Plus
Query: 16 tgaataaatttttaaaagcatcaacaagtattacacgtttaataaatagacaacaatcaa 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 tgaataaatttttaaaagcatcaacaagtattacacgtttaataaatagacaacaatcaa 75
Query: 76 ctattgaaacatgccaatatgcaaaaagatttcaagagattgaagcaagtgaattaaaga 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 ctattgaaacatgccaatatgcaaaaagatttcaagagattgaagcaagtgaattaaaga 135
Query: 136 aaggtatgtggattgaacataagtccaaattattccaaattgagaaagttgtacatcaaa 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 aaggtatgtggattgaacataagtccaaattattccaaattgagaaagttgtacatcaaa 195
Query: 196 aggttgcaatgagaggtggtttcatcattaccgatatgaagaatgttattgatggttcaa 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 aggttgcaatgagaggtggtttcatcattaccgatatgaagaatgttattgatggttcaa 255
Query: 256 aaagtaatattaaatttagaagtgcagagaatatagaattagttgatctctcaagaagta 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aaagtaatattaaatttagaagtgcagagaatatagaattagttgatctctcaagaagta 315
Query: 316 cttataatttcgttgaaactatcaaagatggtaaagcttttgtttttagaagaattgata 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 cttataatttcgttgaaactatcaaagatggtaaagcttttgtttttagaagaattgata 375
Query: 376 gtgaaggtgatgaagaagatgatgaagattttgtttgtacaaatatttcacaattagatg 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gtgaaggtgatgaagaagatgatgaagattttgtttgtacaaatatttcacaattagatg 435
Query: 436 gttattcaccatatttatctttattcggtgaagatactgaattccattttagaacatata 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gttattcaccatatttatctttattcggtgaagatactgaattccattttagaacatata 495
Query: 496 atggtaatgtaattgattttaaaggaccaacacaaattgatcttactattagatctgtat 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 atggtaatgtaattgattttaaaggaccaacacaaattgatcttactattagatctgtat 555
Query: 556 cagatctccaaaacaataatgttcttcattttgaaaatggtcgttcttgtaaaggtccaa 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cagatctccaaaacaataatgttcttcattttgaaaatggtcgttcttgtaaaggtccaa 615
Query: 616 tttatttaaaacctggtgataaagttcaaattcgtttaccagaggaagttttcataacaa 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tttatttaaaacctggtgataaagttcaaattcgtttaccagaggaagttttcataacaa 675
Query: 676 aagtttaaa 684
|||||||||
Sbjct: 676 aagtttaaa 684
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,162,142,977
Number of extensions: 85870128
Number of successful extensions: 9693390
Number of sequences better than 10.0: 1138
Length of query: 812
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 788
Effective length of database: 97,308,875,965
Effective search space: 76679394260420
Effective search space used: 76679394260420
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 6.21 |
| Homology vs Protein |
Query= Contig-U06362-1 (Contig-U06362-1Q) /CSM_Contig/Contig-U06362-1Q.Seq.d
(812 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(Q4FN36) RecName: Full=Elongation factor P; Short=EF-P;... 59 2e-07
(A7HUY3) RecName: Full=Elongation factor P; Short=EF-P;... 58 4e-07
(Q2NAZ6) RecName: Full=Elongation factor P; Short=EF-P;... 57 5e-07
(A1UR93) RecName: Full=Elongation factor P; Short=EF-P;... 56 1e-06
(B3CLX0) RecName: Full=Elongation factor P; Short=EF-P;... 55 2e-06
(Q2GG58) RecName: Full=Elongation factor P; Short=EF-P;... 55 2e-06
(Q6FYN9) RecName: Full=Elongation factor P; Short=EF-P;... 54 5e-06
(A4XJ18) Elongation factor P (EF-P). &CP000679_1238(CP000679|pi... 54 8e-06
(P0C103) RecName: Full=Elongation factor P; Short=EF-P;... 54 8e-06
(A5VS65) RecName: Full=Elongation factor P; Short=EF-P;... 53 1e-05
CP000778_192(CP000778|pid:none) Leptospira biflexa serovar Patoc... 53 1e-05
CP000758_1191(CP000758|pid:none) Ochrobactrum anthropi ATCC 4918... 53 1e-05
(Q11DG9) RecName: Full=Elongation factor P; Short=EF-P;... 52 2e-05
CP000020_1272(CP000020|pid:none) Vibrio fischeri ES114 chromosom... 52 2e-05
(Q1GF47) RecName: Full=Elongation factor P; Short=EF-P;... 52 2e-05
(Q0ALG8) RecName: Full=Elongation factor P; Short=EF-P;... 52 3e-05
(Q5GTF2) RecName: Full=Elongation factor P; Short=EF-P;... 51 4e-05
CR954253_1383(CR954253|pid:none) Lactobacillus delbrueckii subsp... 51 5e-05
CP000412_1149(CP000412|pid:none) Lactobacillus delbrueckii subsp... 50 7e-05
CP000143_1852(CP000143|pid:none) Rhodobacter sphaeroides 2.4.1 c... 50 9e-05
(Q5LU15) RecName: Full=Elongation factor P; Short=EF-P;... 50 1e-04
A85856(A85856) probable elongation factor yeiP [imported] - Esch... 50 1e-04
AE014075_2637(AE014075|pid:none) Escherichia coli CFT073, comple... 50 1e-04
CP000800_2355(CP000800|pid:none) Escherichia coli E24377A, compl... 50 1e-04
(Q28M91) RecName: Full=Elongation factor P; Short=EF-P;... 50 1e-04
(A8GRA8) RecName: Full=Elongation factor P; Short=EF-P;... 50 1e-04
(Q1GTJ4) RecName: Full=Elongation factor P; Short=EF-P;... 50 1e-04
CP000489_2710(CP000489|pid:none) Paracoccus denitrificans PD1222... 49 1e-04
(A4TNC5) RecName: Full=Elongation factor P-like protein; &(A7FK... 49 1e-04
AK058318_1(AK058318|pid:none) Oryza sativa Japonica Group cDNA c... 49 1e-04
AE009952_2856(AE009952|pid:none) Yersinia pestis KIM, complete g... 49 1e-04
(A5VLU9) RecName: Full=Elongation factor P; Short=EF-P;... 49 1e-04
CP000388_2507(CP000388|pid:none) Pseudoalteromonas atlantica T6c... 49 2e-04
(B7LJR2) RecName: Full=Elongation factor P-like protein; &CU928... 49 2e-04
CP000411_1111(CP000411|pid:none) Oenococcus oeni PSU-1, complete... 49 2e-04
CP001612_257(CP001612|pid:none) Rickettsia africae ESF-5, comple... 49 3e-04
(Q54760) Elongation factor P (EF-P). &(Q5N1T5) RecName: Fu &AP0... 49 3e-04
(Q67N94) RecName: Full=Elongation factor P; Short=EF-P;... 49 3e-04
CR378669_103(CR378669|pid:none) Photobacterium profundum SS9; se... 48 3e-04
AE005674_2258(AE005674|pid:none) Shigella flexneri 2a str. 301, ... 48 3e-04
(Q6LQV7) RecName: Full=Elongation factor P-like protein; 48 3e-04
CP000698_339(CP000698|pid:none) Geobacter uraniireducens Rf4, co... 48 3e-04
CU469464_124(CU469464|pid:none) Candidatus Phytoplasma mali stra... 48 3e-04
CP000036_1997(CP000036|pid:none) Shigella boydii Sb227, complete... 48 3e-04
(B7J6R6) RecName: Full=Elongation factor P; Short=EF-P;... 48 3e-04
CP000821_1804(CP000821|pid:none) Shewanella sediminis HAW-EB3, c... 47 6e-04
(Q98F60) RecName: Full=Elongation factor P 1; Short=EF-... 47 6e-04
CP001325_82(CP001325|pid:none) Micromonas sp. RCC299 chromosome ... 47 6e-04
(O67376) RecName: Full=Elongation factor P; Short=EF-P;... 47 7e-04
(A9BEN2) RecName: Full=Elongation factor P; Short=EF-P;... 47 7e-04
CP001391_1112(CP001391|pid:none) Wolbachia sp. wRi, complete gen... 47 7e-04
(Q31YX9) RecName: Full=Elongation factor P-like protein; &(Q83K... 47 7e-04
(Q6MAZ6) RecName: Full=Elongation factor P 2; Short=EF-... 47 7e-04
AE006468_2150(AE006468|pid:none) Salmonella enterica subsp. ente... 46 0.001
CP000857_1453(CP000857|pid:none) Salmonella enterica subsp. ente... 46 0.001
CP000026_601(CP000026|pid:none) Salmonella enterica subsp. enter... 46 0.001
CP000886_773(CP000886|pid:none) Salmonella enterica subsp. enter... 46 0.001
CU468135_1272(CU468135|pid:none) Erwinia tasmaniensis strain ET1... 46 0.001
CP000414_1538(CP000414|pid:none) Leuconostoc mesenteroides subsp... 46 0.002
(Q2S413) RecName: Full=Elongation factor P; Short=EF-P;... 45 0.002
CP001098_609(CP001098|pid:none) Halothermothrix orenii H 168, co... 45 0.002
(Q3IEF7) RecName: Full=Elongation factor P-like protein; &CR954... 45 0.002
(Q4UKM7) RecName: Full=Elongation factor P; Short=EF-P;... 45 0.002
(A8GW85) RecName: Full=Elongation factor P; Short=EF-P;... 45 0.002
AE015927_1421(AE015927|pid:none) Clostridium tetani E88, complet... 45 0.003
(Q894F6) Elongation factor P (EF-P). 45 0.003
(B0C899) RecName: Full=Elongation factor P; Short=EF-P;... 45 0.003
(Q2GKG2) RecName: Full=Elongation factor P; Short=EF-P;... 45 0.004
(Q7MM44) RecName: Full=Elongation factor P-like protein; &(Q8D8... 45 0.004
(A8F0Z8) RecName: Full=Elongation factor P; Short=EF-P;... 45 0.004
AM942759_823(AM942759|pid:none) Proteus mirabilis strain HI4320,... 44 0.005
(Q9PBE1) RecName: Full=Elongation factor P-like protein; 44 0.005
(Q04NC1) RecName: Full=Elongation factor P; Short=EF-P;... 44 0.005
(P0C099) RecName: Full=Elongation factor P; Short=EF-P;... 44 0.006
CP000951_52(CP000951|pid:none) Synechococcus sp. PCC 7002, compl... 44 0.006
(Q2RVG7) RecName: Full=Elongation factor P; Short=EF-P;... 44 0.006
AE010301_294(AE010301|pid:none) Leptospira interrogans serovar L... 44 0.006
(A5ILJ5) RecName: Full=Elongation factor P; Short=EF-P;... 44 0.006
CP000916_953(CP000916|pid:none) Thermotoga neapolitana DSM 4359,... 44 0.008
(Q8RAE2) RecName: Full=Elongation factor P; Short=EF-P;... 44 0.008
CP000383_1508(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 44 0.008
(B0RSN5) RecName: Full=Elongation factor P-like protein; &(Q4UU... 44 0.008
(Q4A7U4) RecName: Full=Elongation factor P; Short=EF-P;... 43 0.011
CP000930_494(CP000930|pid:none) Heliobacterium modesticaldum Ice... 43 0.011
(B7JVR7) RecName: Full=Elongation factor P; Short=EF-P;... 43 0.014
(B2FQ58) RecName: Full=Elongation factor P-like protein; &AM743... 42 0.018
(B5ZBA7) RecName: Full=Elongation factor P; Short=EF-P;... 42 0.018
CP001348_1882(CP001348|pid:none) Clostridium cellulolyticum H10,... 42 0.018
(A8EXY7) RecName: Full=Elongation factor P; Short=EF-P;... 42 0.018
CP001037_416(CP001037|pid:none) Nostoc punctiforme PCC 73102, co... 42 0.018
(Q3BUD7) RecName: Full=Elongation factor P-like protein; &AM039... 42 0.018
(A1BD27) RecName: Full=Elongation factor P; Short=EF-P;... 42 0.018
(Q8PLF1) RecName: Full=Elongation factor P-like protein; &AE008... 42 0.018
(A6LLA5) RecName: Full=Elongation factor P; Short=EF-P;... 42 0.024
(A1SJD7) RecName: Full=Elongation factor P; Short=EF-P;... 42 0.031
(O83537) RecName: Full=Elongation factor P; Short=EF-P;... 42 0.031
(Q2Y9K0) RecName: Full=Elongation factor P; Short=EF-P;... 42 0.031
(A4X611) RecName: Full=Elongation factor P; Short=EF-P;... 42 0.031
(Q8DJD3) RecName: Full=Elongation factor P; Short=EF-P;... 42 0.031
CT573071_1592(CT573071|pid:none) Kuenenia stuttgartiensis genome... 41 0.040
CP001097_191(CP001097|pid:none) Chlorobium limicola DSM 245, com... 41 0.040
(A0JX80) RecName: Full=Elongation factor P; Short=EF-P;... 41 0.040
CP000910_1944(CP000910|pid:none) Renibacterium salmoninarum ATCC... 41 0.040
CP001341_1978(CP001341|pid:none) Arthrobacter chlorophenolicus A... 41 0.040
CP000416_937(CP000416|pid:none) Lactobacillus brevis ATCC 367, c... 41 0.040
AM260479_2139(AM260479|pid:none) Ralstonia eutropha H16 chromoso... 41 0.040
(Q116D6) RecName: Full=Elongation factor P; Short=EF-P;... 41 0.040
(B6INP2) RecName: Full=Elongation factor P; Short=EF-P;... 41 0.053
CP000422_763(CP000422|pid:none) Pediococcus pentosaceus ATCC 257... 41 0.053
CP001600_2484(CP001600|pid:none) Edwardsiella ictaluri 93-146, c... 41 0.053
CP001100_702(CP001100|pid:none) Chloroherpeton thalassium ATCC 3... 41 0.053
CP001056_2341(CP001056|pid:none) Clostridium botulinum B str. Ek... 41 0.053
(Q6AF92) RecName: Full=Elongation factor P; Short=EF-P;... 41 0.053
(Q2RI92) RecName: Full=Elongation factor P; Short=EF-P;... 40 0.069
AY458629_18(AY458629|pid:none) Uncultured marine bacterium 105 c... 40 0.069
(A5CDP1) RecName: Full=Elongation factor P; Short=EF-P;... 40 0.069
(Q1J530) RecName: Full=Elongation factor P; Short=EF-P;... 40 0.069
CP001344_474(CP001344|pid:none) Cyanothece sp. PCC 7425, complet... 40 0.069
(Q3ATP1) RecName: Full=Elongation factor P; Short=EF-P;... 40 0.090
(Q0AZH4) RecName: Full=Elongation factor P; Short=EF-P;... 40 0.090
CP000517_1356(CP000517|pid:none) Lactobacillus helveticus DPC 45... 40 0.090
(A5IT57) RecName: Full=Elongation factor P; Short=EF-P;... 40 0.090
(Q2JP65) RecName: Full=Elongation factor P; Short=EF-P;... 40 0.090
AP009152_1338(AP009152|pid:none) Kocuria rhizophila DC2201 DNA, ... 40 0.090
(A6VX18) RecName: Full=Elongation factor P-like protein; &CP000... 40 0.090
AP006861_143(AP006861|pid:none) Chlamydophila felis Fe/C-56 DNA,... 40 0.090
(A5CRY6) RecName: Full=Elongation factor P; Short=EF-P;... 40 0.12
(B5XI32) RecName: Full=Elongation factor P; Short=EF-P;... 40 0.12
(A5I321) RecName: Full=Elongation factor P; Short=EF-P;... 40 0.12
(B4U7D5) RecName: Full=Elongation factor P; Short=EF-P;... 40 0.12
AP009049_1113(AP009049|pid:none) Clostridium kluyveri NBRC 12016... 40 0.12
CP000113_5620(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 40 0.12
(Q2P1R7) RecName: Full=Elongation factor P-like protein; &(Q5GY... 40 0.12
(Q485Q8) RecName: Full=Elongation factor P-like protein; &CP000... 40 0.12
AC135958_23(AC135958|pid:none) Oryza sativa chromosome 3 BAC OSJ... 39 0.15
(Q9ZDT7) RecName: Full=Elongation factor P; Short=EF-P;... 39 0.15
(Q7VJY4) RecName: Full=Elongation factor P; Short=EF-P;... 39 0.15
(Q74HT9) RecName: Full=Elongation factor P 1; Short=EF-... 39 0.15
(A8LY10) RecName: Full=Elongation factor P; Short=EF-P;... 39 0.15
EU559699_22(EU559699|pid:none) Uncultured crenarchaeote MCG, com... 39 0.15
(A9KMD6) RecName: Full=Elongation factor P; Short=EF-P;... 39 0.20
CP001129_341(CP001129|pid:none) Streptococcus equi subsp. zooepi... 39 0.20
CP000233_516(CP000233|pid:none) Lactobacillus salivarius UCC118,... 39 0.20
CR848038_822(CR848038|pid:none) Chlamydophila abortus strain S26... 39 0.20
AC146760_9(AC146760|pid:none) Medicago truncatula clone mth2-174... 39 0.20
CP000820_1671(CP000820|pid:none) Frankia sp. EAN1pec, complete g... 39 0.20
(Q2W7T6) RecName: Full=Elongation factor P; Short=EF-P;... 39 0.20
(A4FBF7) RecName: Full=Elongation factor P; Short=EF-P;... 39 0.20
CP001107_1381(CP001107|pid:none) Eubacterium rectale ATCC 33656,... 39 0.20
CP001230_1070(CP001230|pid:none) Persephonella marina EX-H1, com... 39 0.20
CP001279_875(CP001279|pid:none) Nautilia profundicola AmH, compl... 39 0.20
(Q5FIJ4) RecName: Full=Elongation factor P 1; Short=EF-... 39 0.20
CP000423_1550(CP000423|pid:none) Lactobacillus casei ATCC 334, c... 39 0.26
(Q17YT0) RecName: Full=Elongation factor P; Short=EF-P;... 38 0.34
CP000412_1497(CP000412|pid:none) Lactobacillus delbrueckii subsp... 38 0.34
CR954253_1803(CR954253|pid:none) Lactobacillus delbrueckii subsp... 38 0.34
(A1VDC3) RecName: Full=Elongation factor P; Short=EF-P;... 38 0.34
(Q9K951) RecName: Full=Elongation factor P; Short=EF-P;... 38 0.34
(Q9PLH1) RecName: Full=Elongation factor P 2; Short=EF-... 38 0.45
(Q3MAQ3) RecName: Full=Elongation factor P; Short=EF-P;... 38 0.45
(A6LF43) RecName: Full=Elongation factor P; Short=EF-P;... 37 0.58
(Q9ZMQ5) RecName: Full=Elongation factor P; Short=EF-P;... 37 0.58
(O84757) RecName: Full=Elongation factor P 2; Short=EF-... 37 0.58
(B6JPS3) RecName: Full=Elongation factor P; Short=EF-P;... 37 0.76
(A0Q087) RecName: Full=Elongation factor P; Short=EF-P;... 37 0.76
EU961988_1(EU961988|pid:none) Zea mays clone 239489 elongation f... 37 0.76
(Q0SRY9) RecName: Full=Elongation factor P; Short=EF-P;... 37 0.76
AJ418352_2(AJ418352|pid:none) Helicobacter pylori tsr gene (part... 37 0.76
(B4RHN9) RecName: Full=Elongation factor P; Short=EF-P; 37 0.76
(A1UFJ5) RecName: Full=Elongation factor P; Short=EF-P;... 37 0.99
(Q8G818) RecName: Full=Elongation factor P; Short=EF-P;... 37 0.99
(Q8EWP5) RecName: Full=Elongation factor P; Short=EF-P;... 37 0.99
AJ418353_2(AJ418353|pid:none) Helicobacter pylori tsr gene (part... 37 0.99
CP000489_1635(CP000489|pid:none) Paracoccus denitrificans PD1222... 36 1.3
AP009178_670(AP009178|pid:none) Nitratiruptor sp. SB155-2 genomi... 36 1.3
CP000088_1091(CP000088|pid:none) Thermobifida fusca YX, complete... 36 1.7
(B4S4A1) RecName: Full=Elongation factor P; Short=EF-P;... 36 1.7
(A9H6E1) RecName: Full=Elongation factor P; Short=EF-P;... 36 1.7
CP000148_98(CP000148|pid:none) Geobacter metallireducens GS-15, ... 36 1.7
AP008937_1816(AP008937|pid:none) Lactobacillus fermentum IFO 395... 36 1.7
(Q74FY7) RecName: Full=Elongation factor P 1; Short=EF-... 35 2.2
(Q0BT69) RecName: Full=Elongation factor P; Short=EF-P;... 35 2.2
(Q7NL41) RecName: Full=Elongation factor P; Short=EF-P;... 35 2.2
FM872307_767(FM872307|pid:none) Chlamydia trachomatis B/TZ1A828/... 35 2.2
(Q2SQE7) RecName: Full=Elongation factor P-like protein; &CP000... 35 2.9
(A4J3D4) RecName: Full=Elongation factor P; Short=EF-P;... 35 2.9
AM295250_1145(AM295250|pid:none) Staphylococcus carnosus subsp. ... 35 2.9
CP001101_303(CP001101|pid:none) Chlorobium phaeobacteroides BS1,... 35 2.9
(Q72JL2) RecName: Full=Elongation factor P; Short=EF-P;... 35 2.9
(Q8KG11) RecName: Full=Elongation factor P; Short=EF-P;... 35 3.8
CP001124_411(CP001124|pid:none) Geobacter bemidjiensis Bem, comp... 34 4.9
(Q30ZZ6) RecName: Full=Elongation factor P; Short=EF-P;... 34 4.9
CP000781_2514(CP000781|pid:none) Xanthobacter autotrophicus Py2,... 34 4.9
(Q83MW6) RecName: Full=Elongation factor P; Short=EF-P;... 34 4.9
CP001229_409(CP001229|pid:none) Sulfurihydrogenibium azorense Az... 33 8.4
AL844502_30(AL844502|pid:none) Plasmodium falciparum 3D7 chromos... 33 8.4
(P0A3B5) RecName: Full=Elongation factor P; Short=EF-P;... 33 8.4
(B2V9Q7) RecName: Full=Elongation factor P; Short=EF-P;... 33 8.4
T18423(T18423)hypothetical protein C0150w - malaria parasite (Pl... 33 8.4
(B0SUL4) RecName: Full=Elongation factor P; Short=EF-P;... 33 8.4
AE003852_1190(AE003852|pid:none) Vibrio cholerae O1 biovar eltor... 33 8.4
>(Q4FN36) RecName: Full=Elongation factor P; Short=EF-P;
&CP000084_578(CP000084|pid:none)
Length = 186
Score = 58.9 bits (141), Expect = 2e-07
Identities = 44/197 (22%), Positives = 90/197 (45%), Gaps = 7/197 (3%)
Frame = +3
Query: 111 EIEASELKKGMWIEHKSKLFQIEKVVHQKVAMRGGFIITDMKNVIDGSKSNIKFRSAENI 290
++ ASE++ GM IE+K+ L+Q+ K H K G F +MK+V +K N +FRS+E++
Sbjct: 2 KLYASEIRVGMLIEYKNDLWQVLKTQHVKPGKGGAFAQVEMKSVNKNTKLNERFRSSESV 61
Query: 291 ELVDLSRSTYNFVETIKDGKAFVFRRIXXXXXXXXXXXFVCTNISQLDGYSPYLSLFGED 470
E L + +N++ + + F+ + NI + + + E+
Sbjct: 62 EKASLDETKFNYLYSDEIDYYFM-----------DPKSYEQINIKK-ETIGEKGKMLTEN 109
Query: 471 TEFHFRTYNGNVIDFKGPTQI-------DLTIRSVSDLQNNNVLHFENGRSCKGPIYLKP 629
E YN + + P Q+ D+ ++ + + +NG + + P +++
Sbjct: 110 LEVSISFYNEKPLTVELPNQVTCTVDTTDVALKGQTVSSSYKPATLDNGVNIQVPPFIES 169
Query: 630 GDKVQIRLPEEVFITKV 680
GDK+ + ++ K+
Sbjct: 170 GDKIIVDTRTMEYVKKI 186
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,176,115,013
Number of extensions: 22204741
Number of successful extensions: 46919
Number of sequences better than 10.0: 201
Number of HSP's gapped: 46880
Number of HSP's successfully gapped: 206
Length of query: 270
Length of database: 1,040,966,779
Length adjustment: 126
Effective length of query: 144
Effective length of database: 637,226,869
Effective search space: 91760669136
Effective search space used: 91760669136
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
2 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |