Contig-U06349-1 |
Contig ID |
Contig-U06349-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
no gap |
Contig length |
444 |
Chromosome number (1..6, M) |
4 |
Chromosome length |
5430582 |
Start point |
719249 |
End point |
718805 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U06349 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11. 8 |
Homology vs DNA |
Query= Contig-U06349-1 (Contig-U06349-1Q) /CSM_Contig/Contig-U06349-1Q.Seq.d (444 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU261941) Dictyostelium discoideum vegetative cDNA clone:VS... 561 e-156 1 (CP000387) Streptococcus sanguinis SK36, complete genome. 48 0.27 1 (EJ021777) 1095448006500 Global-Ocean-Sampling_GS-26-01-01-1... 40 0.49 2 (AP010446) Lotus japonicus genomic DNA, chromosome 5, clone:... 34 0.58 2 (AP010444) Lotus japonicus genomic DNA, chromosome 5, clone:... 34 0.60 2 (AC135392) Rattus norvegicus clone CH230-44D9, *** SEQUENCIN... 46 1.0 1 (AC130012) Rattus norvegicus clone CH230-517E12, WORKING DRA... 46 1.0 1 (AC129721) Rattus norvegicus clone CH230-42J3, WORKING DRAFT... 46 1.0 1 (AC094479) Rattus norvegicus clone CH230-4J17, WORKING DRAFT... 46 1.0 1 (AC176092) Strongylocentrotus purpuratus clone R3-24C18, WOR... 46 1.0 1 (DH705503) Rattus norvegicus DNA, BAC clone: RNB1-267E19, 5'... 46 1.0 1 (BH163023) ENTRD42TF Entamoeba histolytica Sheared DNA Entam... 38 1.6 2 (EK215748) 1095460118138 Global-Ocean-Sampling_GS-31-01-01-1... 38 1.6 2 (AC178100) Strongylocentrotus purpuratus clone R3-3068H2, WO... 44 1.8 3 (AC022690) Homo sapiens chromosome 8, clone RP11-480O10, com... 40 2.2 3 (AC181732) Strongylocentrotus purpuratus clone R3-1038A09, W... 36 2.2 4 (DW283988) UI-S-HH0-adx-l-20-0-UI.s1 UI-S-HH0 Euprymna scolo... 32 2.8 2 (CV674226) RET7SJ_30B12.T7 Schistosoma japonicum reverse cDN... 40 3.4 2 (CV672353) sjm001_B08_sjm001B08-T3 Schistosoma japonicum rev... 40 3.5 2 (AY808623) Schistosoma japonicum SJCHGC07752 protein mRNA, p... 40 3.5 2 (AC026441) Homo sapiens chromosome 5 clone CTD-2280O3, compl... 38 3.5 3 (BX255954) Zebrafish DNA sequence from clone CH211-275D2 in ... 38 3.7 2 (AC016648) Homo sapiens chromosome 5 clone RPCI-1_137K24, co... 38 4.1 3 (AC145959) Gallus gallus chromosome UNK clone CH261-17M10, c... 44 4.1 1 (BV612136) S217P61612RC7.T0 Noemie Pan troglodytes troglodyt... 44 4.1 1 (AY206774) Runaria reducta 16S ribosomal RNA gene, partial s... 44 4.1 1 (AC149952) Strongylocentrotus purpuratus clone R3-32B16, WOR... 44 4.1 1 (AC201117) Strongylocentrotus purpuratus clone R3-13N6, WORK... 44 4.1 1 (AC180970) Strongylocentrotus purpuratus clone R3-3059B02, W... 44 4.1 1 (AC180381) Strongylocentrotus purpuratus clone R3-3113H8, WO... 44 4.1 1 (AC180296) Strongylocentrotus purpuratus clone R3-3119I18, W... 44 4.1 1 (AC179557) Strongylocentrotus purpuratus clone R3-8C8, WORKI... 44 4.1 1 (AC179524) Strongylocentrotus purpuratus clone R3-1035D21, W... 44 4.1 1 (AC179321) Strongylocentrotus purpuratus clone R3-57C9, WORK... 44 4.1 1 (AC178434) Strongylocentrotus purpuratus clone R3-3041B5, WO... 44 4.1 1 (AC176568) Strongylocentrotus purpuratus clone R3-3076M7, WO... 44 4.1 1 (ET437875) ONBBD20_Reverse Onion BAC Library Allium cepa gen... 44 4.1 1 (EK043991) 1092959539498 Global-Ocean-Sampling_GS-31-01-01-1... 44 4.1 1 (EJ829816) 1093017576553 Global-Ocean-Sampling_GS-30-02-01-1... 44 4.1 1 (EJ805138) 1093017454249 Global-Ocean-Sampling_GS-30-02-01-1... 44 4.1 1 (EJ770900) 1092966607838 Global-Ocean-Sampling_GS-30-02-01-1... 44 4.1 1 (EJ740166) 1092962011848 Global-Ocean-Sampling_GS-30-02-01-1... 44 4.1 1 (EJ734552) 1092961082326 Global-Ocean-Sampling_GS-30-02-01-1... 44 4.1 1 (EJ724623) 1092959487318 Global-Ocean-Sampling_GS-30-02-01-1... 44 4.1 1 (CG754663) P050-1-F10.za Ppa EcoRI BAC Library Pristionchus ... 44 4.1 1 (EG612332) REPROTRACTF095448J11 POSSUM_01-POSSUM-C-REPROTRAC... 44 4.1 1 (EC281616) BRAINF089465F8 POSSUM_01-POSSUM-C-BRAIN-2KB Trich... 44 4.1 1 (DY774601) Sf1F02128-3-1 Spodoptera frugiperda Fat Body cDNA... 44 4.1 1 (BG935868) SS1-0195 Atlantic Salmon spleen Salmo salar cDNA ... 44 4.1 1 (CV247727) WS01119.B21_C07 PT-P-FL-A-2 Populus trichocarpa c... 38 4.8 2 (AC120413) Mus musculus chromosome 5, clone RP24-458L16, com... 38 6.5 3 (BX004858) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 6.7 2 (AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 30 7.6 2 (ED800926) MG__Ba0009L22r MG__Ba Mimulus guttatus genomic, g... 34 8.0 2 (EF457753) Gossypium hirsutum retrotransposon putative copia... 36 8.1 4 (AL731703) Mouse DNA sequence from clone RP23-100O16 on chro... 38 8.2 3
>(AU261941) Dictyostelium discoideum vegetative cDNA clone:VSB305, 3' end single read. Length = 445
Score = 561 bits (283), Expect = e-156 Identities = 304/304 (100%) Strand = Plus / Plus
Query: 1 tggtgatgaatttttaatcattaaaagaggtgttgaaaatgttgatcatgctgatcattt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tggtgatgaatttttaatcattaaaagaggtgttgaaaatgttgatcatgctgatcattt 60
Query: 61 catttcacaattcactaaaaacgtctcttcaagtagcttcactgtcgacggtgaatcaag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 catttcacaattcactaaaaacgtctcttcaagtagcttcactgtcgacggtgaatcaag 120
Query: 121 ttcaaccatttttccaattttcttttcanatggtggtgttgtctttaaaaaatntgaaac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ttcaaccatttttccaattttcttttcanatggtggtgttgtctttaaaaaatntgaaac 180
Query: 181 taaagtttcttcaattattaaatctgccgatgnaaaaatgtatcaaatggaaaaaggnat 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 taaagtttcttcaattattaaatctgccgatgnaaaaatgtatcaaatggaaaaaggnat 240
Query: 241 tagtcaaataaatgttgttgaatttgnaaaaaattaaattcaattttaaanatataaana 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 tagtcaaataaatgttgttgaatttgnaaaaaattaaattcaattttaaanatataaana 300
Query: 301 tata 304 |||| Sbjct: 301 tata 304
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 420,737,442 Number of extensions: 28912484 Number of successful extensions: 2268161 Number of sequences better than 10.0: 56 Length of query: 444 Length of database: 95,242,211,685 Length adjustment: 23 Effective length of query: 421 Effective length of database: 93,106,754,628 Effective search space: 39197943698388 Effective search space used: 39197943698388 X1: 11 (21.8 bits) S2: 21 (42.1 bits)
|
protein update |
2009. 6.21 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
1 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |