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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U06299-1
Contig ID Contig-U06299-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U06299-1 (Contig-U06299-1Q) /CSM_Contig/Contig-U06299-1Q.Seq.d
AAATTGTTTAACAACAACAAACACATAAATATAAAAATGATGAAAAAATT
CGATATTGCTTTATTAATACTTTCATTTTTAATGATTGTTTTAATTATTA
GTTCATTAAGATCAGAATGGCAAAAATTATCAATTAGTGTTAAAATTGGT
GTTAATGAAGCAAAAACAGAAAATATTAAACGTCCATTATATGATAGTCA
AGTTTTTGTATCAAGTAATGAAGAATTATTATATCAATATAGTGTATCAT
GGGAAAAGGATCATAATTGTACAACTGTTACAGGATTAGGAGCATTTACA
ATCATATTATTATTCATTTCAATTATTAATCTCATAAAAACTCATATTAA
ATTCATAAATTCAAAATTGTATACATGGTTTGAAAGAATTGGTTTATCAA
CTATTTTAACAACATTATTCACATTTATTGCATTTTTAGTATCATTGAAA
TTGGAGATGATTACAGTTATAGATGGTCATCATTTCGCAAATAAAATGAT
GTCACATCAATCGGAATCTGAAATTTTATTAGGTAATGAATCAATGCTTG
TAAATTTAGATTCAACTACAACAACTGGTTTCCAAATTATGGTTGCAACT
TTTGTTTTCAGTACAATCTATTCAGTTTTAACCGTTTTAAGATACAGAGA
AATCACTTCACCATCTTCATCAATTGATTATAGATTCTTATATTCTGGTG
AATCTTCTTTCTTGGAAGATAATGAATATAATGATGGCTCTGATGGTACT
TTCCCTACTTCAACTGACATTTAAATAAAATAATAATATTAAAATTTTTT
ACA
Gap no gap
Contig length 803
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 3749892
End point 3750695
Strand (PLUS/MINUS) PLUS
Number of clones 6
Number of EST 6
Link to clone list U06299
List of clone(s) 

est1=VSC686E,1,487
est2=VSH734Z,10,499
est3=VSF531F,73,508
est4=VSA701Z,137,667
est5=VSC147Z,233,804
est6=VSD673Z,352,645
Translated Amino Acid sequence 
KLFNNNKHINIKMMKKFDIALLILSFLMIVLIISSLRSEWQKLSISVKIGVNEAKTENIK
RPLYDSQVFVSSNEELLYQYSVSWEKDHNCTTVTGLGAFTIILLFISIINLIKTHIKFIN
SKLYTWFERIGLSTILTTLFTFIAFLVSLKLEMITVIDGHHFANKMMSHQSESEILLGNE
SMLVNLDSTTTTGFQIMVATFVFSTIYSVLTVLRYREITSPSSSIDYRFLYSGESSFLED
NEYNDGSDGTFPTSTDI*ik**y*nfl
Translated Amino Acid sequence (All Frames) 
Frame A:
KLFNNNKHINIKMMKKFDIALLILSFLMIVLIISSLRSEWQKLSISVKIGVNEAKTENIK
RPLYDSQVFVSSNEELLYQYSVSWEKDHNCTTVTGLGAFTIILLFISIINLIKTHIKFIN
SKLYTWFERIGLSTILTTLFTFIAFLVSLKLEMITVIDGHHFANKMMSHQSESEILLGNE
SMLVNLDSTTTTGFQIMVATFVFSTIYSVLTVLRYREITSPSSSIDYRFLYSGESSFLED
NEYNDGSDGTFPTSTDI*ik**y*nfl


Frame B:
ncltttnt*i*k**knsilly*yfhf**lf*llvh*dqngknyqlvlklvlmkqkqkiln
vhymivkflyqvmknyyinivyhgkriiivqllqd*ehlqsyyysfqllis*klilns*i
qncihglkelvyqlf*qhyshllhf*yh*nwr*lql*mviisqik*chinrnlkfy*vmn
qcl*i*iqlqqlvsklwlqllfsvqsiqf*pf*dtekslhhlhqliidsyilvnllswki
mnimmalmvlsllqltfk*nnnikify


Frame C:
iv*qqqthkykndekirycfintfifndcfny*fikirmakiin*c*nwc**sknrky*t
sii**ssfcik**riiisi*cimgkgs*lyncyrirsiynhiiihfny*shknsy*ihkf
kivymv*knwfinyfnniihiycifsiieigddysyrwssfrk*ndvtsigi*nfir**i
nackfrfnynnwfpnygcnfcfqynlfsfnrfkiqrnhftifin*l*ilifw*ifflgr*
*i**wl*wyfpyfn*hlnkiiilkfft
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06299-1 (Contig-U06299-1Q)
/CSM_Contig/Contig-U06299-1Q.Seq.d
         (803 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06299-1 (Contig-U06299-1Q) /CSM_Contig/Conti...  1592  0.0
Contig-U09486-1 (Contig-U09486-1Q) /CSM_Contig/Conti...    48  1e-05
Contig-U12444-1 (Contig-U12444-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U13007-1 (Contig-U13007-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U04169-1 (Contig-U04169-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U14475-1 (Contig-U14475-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U14108-1 (Contig-U14108-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U11484-1 (Contig-U11484-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U09640-1 (Contig-U09640-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U08964-1 (Contig-U08964-1Q) /CSM_Contig/Conti...    38  0.014

>Contig-U06299-1 (Contig-U06299-1Q) /CSM_Contig/Contig-U06299-1Q.Seq.d
          Length = 803

 Score = 1592 bits (803), Expect = 0.0
 Identities = 803/803 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaattgtttaacaacaacaaacacataaatataaaaatgatgaaaaaattcgatattgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaattgtttaacaacaacaaacacataaatataaaaatgatgaaaaaattcgatattgct 60

                                                                       
Query: 61  ttattaatactttcatttttaatgattgttttaattattagttcattaagatcagaatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttattaatactttcatttttaatgattgttttaattattagttcattaagatcagaatgg 120

                                                                       
Query: 121 caaaaattatcaattagtgttaaaattggtgttaatgaagcaaaaacagaaaatattaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caaaaattatcaattagtgttaaaattggtgttaatgaagcaaaaacagaaaatattaaa 180

                                                                       
Query: 181 cgtccattatatgatagtcaagtttttgtatcaagtaatgaagaattattatatcaatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cgtccattatatgatagtcaagtttttgtatcaagtaatgaagaattattatatcaatat 240

                                                                       
Query: 241 agtgtatcatgggaaaaggatcataattgtacaactgttacaggattaggagcatttaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agtgtatcatgggaaaaggatcataattgtacaactgttacaggattaggagcatttaca 300

                                                                       
Query: 301 atcatattattattcatttcaattattaatctcataaaaactcatattaaattcataaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atcatattattattcatttcaattattaatctcataaaaactcatattaaattcataaat 360

                                                                       
Query: 361 tcaaaattgtatacatggtttgaaagaattggtttatcaactattttaacaacattattc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcaaaattgtatacatggtttgaaagaattggtttatcaactattttaacaacattattc 420

                                                                       
Query: 421 acatttattgcatttttagtatcattgaaattggagatgattacagttatagatggtcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 acatttattgcatttttagtatcattgaaattggagatgattacagttatagatggtcat 480

                                                                       
Query: 481 catttcgcaaataaaatgatgtcacatcaatcggaatctgaaattttattaggtaatgaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 catttcgcaaataaaatgatgtcacatcaatcggaatctgaaattttattaggtaatgaa 540

                                                                       
Query: 541 tcaatgcttgtaaatttagattcaactacaacaactggtttccaaattatggttgcaact 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tcaatgcttgtaaatttagattcaactacaacaactggtttccaaattatggttgcaact 600

                                                                       
Query: 601 tttgttttcagtacaatctattcagttttaaccgttttaagatacagagaaatcacttca 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tttgttttcagtacaatctattcagttttaaccgttttaagatacagagaaatcacttca 660

                                                                       
Query: 661 ccatcttcatcaattgattatagattcttatattctggtgaatcttctttcttggaagat 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ccatcttcatcaattgattatagattcttatattctggtgaatcttctttcttggaagat 720

                                                                       
Query: 721 aatgaatataatgatggctctgatggtactttccctacttcaactgacatttaaataaaa 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 aatgaatataatgatggctctgatggtactttccctacttcaactgacatttaaataaaa 780

                                  
Query: 781 taataatattaaaattttttaca 803
           |||||||||||||||||||||||
Sbjct: 781 taataatattaaaattttttaca 803


>Contig-U09486-1 (Contig-U09486-1Q) /CSM_Contig/Contig-U09486-1Q.Seq.d
          Length = 638

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 769 atttaaataaaataataatattaa 792
           ||||||||||||||||||||||||
Sbjct: 87  atttaaataaaataataatattaa 110


>Contig-U12444-1 (Contig-U12444-1Q) /CSM_Contig/Contig-U12444-1Q.Seq.d
          Length = 1346

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 769 atttaaataaaataataatattaaaa 794
           |||||||||||||||||| |||||||
Sbjct: 507 atttaaataaaataataacattaaaa 532


 Score = 34.2 bits (17), Expect = 0.22
 Identities = 23/25 (92%)
 Strand = Plus / Minus

                                    
Query: 304 atattattattcatttcaattatta 328
           |||||||||||  ||||||||||||
Sbjct: 405 atattattattattttcaattatta 381


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 28,853
Number of Sequences: 6905
Number of extensions: 28853
Number of successful extensions: 3400
Number of sequences better than 10.0: 499
length of query: 803
length of database: 5,674,871
effective HSP length: 16
effective length of query: 787
effective length of database: 5,564,391
effective search space: 4379175717
effective search space used: 4379175717
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11. 8
Homology vs DNA 
Query= Contig-U06299-1 (Contig-U06299-1Q) /CSM_Contig/Contig-U06299-1Q.Seq.d
         (803 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU262366) Dictyostelium discoideum vegetative cDNA clone:VS...   862   0.0    2
(AU262726) Dictyostelium discoideum vegetative cDNA clone:VS...   567   e-157  1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    44   4e-04  11
(AL929150) Zebrafish DNA sequence from clone CH211-196H16 in...    44   0.002  7
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    44   0.002  9
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    36   0.004  11
(AX458578) Sequence 124 from Patent WO0246454.                     38   0.004  5
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    36   0.006  17
(AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5...    38   0.013  6
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome.       34   0.013  11
(AL844509) Plasmodium falciparum chromosome 13.                    44   0.020  10
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    36   0.023  20
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    44   0.025  12
(EJ944733) 1093018907073 Global-Ocean-Sampling_GS-30-02-01-1...    46   0.025  2
(EJ028812) 1095454034253 Global-Ocean-Sampling_GS-26-01-01-1...    46   0.027  2
(ER511447) 1093015448605 Global-Ocean-Sampling_GS-35-01-01-1...    46   0.028  2
(EJ930723) 1093018803981 Global-Ocean-Sampling_GS-30-02-01-1...    46   0.029  2
(EJ834122) 1093017607675 Global-Ocean-Sampling_GS-30-02-01-1...    46   0.030  2
(EJ982210) 1093022162543 Global-Ocean-Sampling_GS-30-02-01-1...    46   0.030  2
(BX005076) Zebrafish DNA sequence from clone DKEY-7N16 in li...    52   0.033  1
(CR855384) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    52   0.033  1
(EE209278) a4g19z2.f1 Danio rerio 12am (night) eye/brain cDN...    52   0.033  1
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    52   0.033  1
(ER333798) 1092344285820 Global-Ocean-Sampling_GS-34-01-01-1...    46   0.033  2
(BX548174) Prochlorococcus marinus MED4 complete genome.           34   0.050  18
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         34   0.051  12
(CR382400) Plasmodium falciparum chromosome 6, complete sequ...    34   0.061  11
(AE017263) Mesoplasma florum L1 complete genome.                   34   0.067  15
(AL844506) Plasmodium falciparum chromosome  7.                    34   0.076  13
(AL390739) Human DNA sequence from clone RP11-157F14 on chro...    40   0.076  6
(AL357043) Human DNA sequence *** SEQUENCING CANCELLED *** f...    40   0.086  6
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    34   0.095  9
(EY123531) NADL-aaa19f11.g1 Rhodnius_prolixus_EST_NADL_RpcDN...    36   0.11   2
(EY123780) NADL-aaa19f11.b1 Rhodnius_prolixus_EST_NADL_RpcDN...    36   0.11   2
(EJ467786) 1095403391032 Global-Ocean-Sampling_GS-28-01-01-1...    46   0.12   2
(CP000903) Bacillus weihenstephanensis KBAB4, complete genome.     38   0.12   18
(CU151895) Zebrafish DNA sequence from clone DKEY-192O1 in l...    50   0.13   1
(CU463997) Wallaby DNA sequence from clone MEKBa-66I4.             50   0.13   1
(CU463227) Wallaby DNA sequence from clone MEKBa-466E14.           50   0.13   1
(CU463226) Wallaby DNA sequence from clone MEKBa-288B16.           50   0.13   1
(CU463129) Wallaby DNA sequence from clone MEKBa-303E17.           50   0.13   1
(AC021015) Homo sapiens BAC clone RP11-320C1 from 2, complet...    50   0.13   1
(AC182901) Bos taurus clone CH240-341H3, WORKING DRAFT SEQUE...    50   0.13   1
(AC181580) Bos taurus clone CH240-397C5, WORKING DRAFT SEQUE...    50   0.13   1
(ER583189) 1093015852076 Global-Ocean-Sampling_GS-36-01-01-2...    50   0.13   1
(EJ985615) 1093023008109 Global-Ocean-Sampling_GS-30-02-01-1...    50   0.13   1
(EJ909811) 1093018531899 Global-Ocean-Sampling_GS-30-02-01-1...    50   0.13   1
(BE039924) OC101D08 OC Oryza sativa Indica Group cDNA 5' sim...    50   0.13   1
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135...    36   0.13   8
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    40   0.15   6
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    48   0.19   11
(AM441922) Vitis vinifera, whole genome shotgun sequence, co...    38   0.22   3
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    44   0.26   13
(AC013717) Homo sapiens BAC clone RP11-24I5 from 2, complete...    48   0.27   3
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    40   0.28   2
(CU466966) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   0.28   2
(CR769779) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   0.29   2
(AL929359) Plasmodium falciparum strain 3D7, chromosome 9; s...    32   0.30   9
(Z68116) Caenorhabditis elegans Cosmid F42F12.                     42   0.32   4
(BX137185) Danio rerio genomic clone DKEY-99P23, genomic sur...    46   0.35   2
(AC069425) Homo sapiens chromosome 3 clone RP11-187D11, WORK...    44   0.36   5
(CU138489) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.37   6
(EK096695) 1092962040879 Global-Ocean-Sampling_GS-31-01-01-1...    36   0.38   2
(AC005504) Plasmodium falciparum chromosome 12, *** SEQUENCI...    36   0.38   6
(AL606481) Zebrafish DNA sequence from clone BUSM1-99M4 Cont...    40   0.42   3
(AE014847) Plasmodium falciparum 3D7 chromosome 12, section ...    32   0.45   9
(EJ811502) 1093017492150 Global-Ocean-Sampling_GS-30-02-01-1...    34   0.47   3
(CT025864) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   0.48   5
(CT025555) Mouse DNA sequence from clone RP24-84E11 on chrom...    48   0.51   1
(AC140985) Mus musculus BAC clone RP23-60H23 from chromosome...    48   0.51   1
(AC023913) Arabidopsis thaliana chromosome 1 BAC F7P12 genom...    48   0.51   1
(AC007454) Arabidopsis thaliana chromosome 1 BAC F23M19 sequ...    48   0.51   1
(AJ514361) Stilbum cyanurum cyanurum mitochondrial partial 1...    48   0.51   1
(AL031777) Human DNA sequence from clone RP1-34B20 on chromo...    48   0.51   1
(AC127930) Rattus norvegicus clone CH230-324F12, *** SEQUENC...    48   0.51   1
(AL359892) Human DNA sequence *** SEQUENCING CANCELLED *** f...    48   0.51   1
(ER967328) AF__Bc0006B10r AF__Bc Aquilegia formosa genomic, ...    48   0.51   1
(EK235591) 1095460198451 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.51   1
(EK195604) 1095460037314 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.51   1
(AL261486) Tetraodon nigroviridis genome survey sequence PUC...    48   0.51   1
(DV356024) NABYB57TR Aedes aegypti infected with Brugia Mala...    48   0.51   1
(DV356023) NABYB57TF Aedes aegypti infected with Brugia Mala...    48   0.51   1
(AU074562) Dictyostelium discoideum slug cDNA, clone SSL266.       48   0.51   1
(CS468878) Sequence 69 from Patent EP1748080.                      36   0.65   7
(CS419355) Sequence 69 from Patent WO2006094836.                   36   0.65   7
(AM464523) Vitis vinifera contig VV78X092884.5, whole genome...    34   0.70   3
(CR550302) Zebrafish DNA sequence from clone DKEY-145I3 in l...    38   0.73   5
(BX255957) Zebrafish DNA sequence from clone CH211-215P14 in...    34   0.74   8
(AC010667) Drosophila melanogaster, chromosome 4, region 101...    36   0.85   7
(CA915983) PCS03631 Scarlet Runner Bean Suspensor Region Tri...    44   0.88   2
(DX521936) GH_MBb0050K16f GH_MBb Gossypium hirsutum genomic ...    34   0.96   3
(AC211451) Zea mays chromosome 2 clone CH201-389K23; ZMMBBc0...    46   0.99   2
(BD061520) Genome DNA of symbiotic bacteria of aphid.              32   1.1    13
(AR409405) Sequence 1 from patent US 6632935.                      32   1.1    13
(BA000003) Buchnera aphidicola str. APS (Acyrthosiphon pisum...    32   1.1    13
(BX247899) Zebrafish DNA sequence from clone CH211-229B6 in ...    36   1.1    4
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    32   1.1    10
(AC141740) Apis mellifera clone CH224-58F11, WORKING DRAFT S...    44   1.1    4
(AL662955) Oryza sativa genomic DNA, chromosome 4, BAC clone...    38   1.1    3
(AC178069) Strongylocentrotus purpuratus clone R3-3059C14, W...    34   1.1    7

>(AU262366) Dictyostelium discoideum vegetative cDNA clone:VSC147,
           3' end single read.
          Length = 572

 Score =  862 bits (435), Expect(2) = 0.0
 Identities = 435/435 (100%)
 Strand = Plus / Plus


Query: 369 gtatacatggtttgaaagaattggtttatcaactattttaacaacattattcacatttat 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 gtatacatggtttgaaagaattggtttatcaactattttaacaacattattcacatttat 196


Query: 429 tgcatttttagtatcattgaaattggagatgattacagttatagatggtcatcatttcgc 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tgcatttttagtatcattgaaattggagatgattacagttatagatggtcatcatttcgc 256


Query: 489 aaataaaatgatgtcacatcaatcggaatctgaaattttattaggtaatgaatcaatgct 548
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aaataaaatgatgtcacatcaatcggaatctgaaattttattaggtaatgaatcaatgct 316


Query: 549 tgtaaatttagattcaactacaacaactggtttccaaattatggttgcaacttttgtttt 608
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tgtaaatttagattcaactacaacaactggtttccaaattatggttgcaacttttgtttt 376


Query: 609 cagtacaatctattcagttttaaccgttttaagatacagagaaatcacttcaccatcttc 668
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cagtacaatctattcagttttaaccgttttaagatacagagaaatcacttcaccatcttc 436


Query: 669 atcaattgattatagattcttatattctggtgaatcttctttcttggaagataatgaata 728
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 atcaattgattatagattcttatattctggtgaatcttctttcttggaagataatgaata 496


Query: 729 taatgatggctctgatggtactttccctacttcaactgacatttaaataaaataataata 788
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 taatgatggctctgatggtactttccctacttcaactgacatttaaataaaataataata 556


Query: 789 ttaaaattttttaca 803
           |||||||||||||||
Sbjct: 557 ttaaaattttttaca 571

 Score =  133 bits (67), Expect(2) = 0.0
 Identities = 67/67 (100%)
 Strand = Plus / Plus


Query: 233 atcaatatagtgtatcatgggaaaaggatcataattgtacaactgttacaggattaggag 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atcaatatagtgtatcatgggaaaaggatcataattgtacaactgttacaggattaggag 60


Query: 293 catttac 299
           |||||||
Sbjct: 61  catttac 67

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,088,499,776
Number of extensions: 77283494
Number of successful extensions: 7019401
Number of sequences better than 10.0: 652
Length of query: 803
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 779
Effective length of database: 97,308,875,965
Effective search space: 75803614376735
Effective search space used: 75803614376735
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.21
Homology vs Protein 
Query= Contig-U06299-1 (Contig-U06299-1Q) /CSM_Contig/Contig-U06299-1Q.Seq.d
         (803 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000560_452(CP000560|pid:none) Bacillus amyloliquefaciens FZB42...    37   0.74
CP000568_532(CP000568|pid:none) Clostridium thermocellum ATCC 27...    35   2.8
(Q54U64) RecName: Full=Putative uncharacterized protein DDB_G028...    27   7.2
CP001099_778(CP001099|pid:none) Chlorobaculum parvum NCIB 8327, ...    33   8.2

>CP000560_452(CP000560|pid:none) Bacillus amyloliquefaciens FZB42,
           complete genome.
          Length = 273

 Score = 37.0 bits (84), Expect = 0.74
 Identities = 21/69 (30%), Positives = 35/69 (50%)
 Frame = +1

Query: 52  DIALLILSFLMIVLIISSLRSEWQKLSISVKIGVNEAKTENIKRPLYDSQVFVSSNEELL 231
           ++AL  +   + + ++S+  SE+ KL     + +N A  +     L     F   N E+L
Sbjct: 68  ELALRAVQLGLSLKLLSATLSEFWKLLYETMVDLNMADQDRADLILEIDSFFNPINTEIL 127

Query: 232 YQYSVSWEK 258
            QYS+SWEK
Sbjct: 128 NQYSISWEK 136

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 996,762,295
Number of extensions: 17051893
Number of successful extensions: 41397
Number of sequences better than 10.0: 4
Number of HSP's gapped: 41388
Number of HSP's successfully gapped: 5
Length of query: 267
Length of database: 1,040,966,779
Length adjustment: 126
Effective length of query: 141
Effective length of database: 637,226,869
Effective search space: 89848988529
Effective search space used: 89848988529
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.63  gvh: 0.65  alm: 0.14  top: 0.43  tms: 0.27  mit: 0.28  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 24.0 %: mitochondrial
	 20.0 %: plasma membrane
	  8.0 %: nuclear
	  4.0 %: Golgi
	  4.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U06299-1 is end
VS (DIR, S) 6
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0