NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U06292-1
Contig ID Contig-U06292-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U06292-1 (Contig-U06292-1Q) /CSM_Contig/Contig-U06292-1Q.Seq.d
ATCGTTGGTAATAAAGAACCATTTGTAGATATTCCAGATGAATATATTAG
AGATGCATTGGTAGATTTATTGGATGTGAGCAATCATCCAATCTTAATTC
ATTGCAATAAAGGGAACCATAGAACAGGTTGTTTAGTTGGATGTTTAAGA
AAACTTCTCAAATGGTCATACACATATATATTTGATGAATATAGAAGATT
TGCTGGAAGTAAAGTAAGAGTTTTGGATCAACAATTTATTGAATTATTTA
ATTTAGAAGTACCATATAACNAGAGGTATAAACCTGATTGGTTGACCAAC
TAATTTTAANAATGGAATAATAATAATAATAATAATAAANTATTTTTATN
ATTGTCATCAACATCAATTANNATAATAGTATNAAAATTGAAATGTTTCA
ACGAAAATTATNAAAATAAAAAAAAAAAAAAAAA
Gap no gap
Contig length 434
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 3818687
End point 3819124
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U06292
List of clone(s) 

est1=VSA637Z,1,435
Translated Amino Acid sequence 
IVGNKEPFVDIPDEYIRDALVDLLDVSNHPILIHCNKGNHRTGCLVGCLRKLLKWSYTYI
FDEYRRFAGSKVRVLDQQFIELFNLEVPYNXRYKPDWLTN*f*xwnnnnnnnkxflxlss
tsixiivxklkcfnenyxnkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
IVGNKEPFVDIPDEYIRDALVDLLDVSNHPILIHCNKGNHRTGCLVGCLRKLLKWSYTYI
FDEYRRFAGSKVRVLDQQFIELFNLEVPYNXRYKPDWLTN*f*xwnnnnnnnkxflxlss
tsixiivxklkcfnenyxnkkkkk


Frame B:
slviknhl*ifqmnilemhw*iywm*aiiqs*fiaikgtieqvv*ldv*enfsnghthiy
lmniedllevk*efwinnllnyli*kyhitrginlig*ptnfxngiiiiiiixyfyxchq
hqlx**yxn*nvstkixkikkkkk


Frame C:
rw**rticrysr*iy*rcigrfigceqssnlnslq*rep*nrlfswmfkktsqmvihiyi
**i*kicwk*sksfgstiy*ii*frsti*xev*t*lvdqlilxme*******xifxivin
inxxnsxkiemfqrklxk*kkkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06292-1 (Contig-U06292-1Q)
/CSM_Contig/Contig-U06292-1Q.Seq.d
         (434 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06292-1 (Contig-U06292-1Q) /CSM_Contig/Conti...   601  e-172
Contig-U05212-1 (Contig-U05212-1Q) /CSM_Contig/Conti...    46  3e-05
Contig-U14510-1 (Contig-U14510-1Q) /CSM_Contig/Conti...    36  0.030
Contig-U12056-1 (Contig-U12056-1Q) /CSM_Contig/Conti...    36  0.030
Contig-U14077-1 (Contig-U14077-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U13836-1 (Contig-U13836-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U12275-1 (Contig-U12275-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U11680-1 (Contig-U11680-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U11315-1 (Contig-U11315-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U11292-1 (Contig-U11292-1Q) /CSM_Contig/Conti...    34  0.12

>Contig-U06292-1 (Contig-U06292-1Q) /CSM_Contig/Contig-U06292-1Q.Seq.d
          Length = 434

 Score =  601 bits (303), Expect = e-172
 Identities = 306/306 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcgttggtaataaagaaccatttgtagatattccagatgaatatattagagatgcattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atcgttggtaataaagaaccatttgtagatattccagatgaatatattagagatgcattg 60

                                                                       
Query: 61  gtagatttattggatgtgagcaatcatccaatcttaattcattgcaataaagggaaccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gtagatttattggatgtgagcaatcatccaatcttaattcattgcaataaagggaaccat 120

                                                                       
Query: 121 agaacaggttgtttagttggatgtttaagaaaacttctcaaatggtcatacacatatata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agaacaggttgtttagttggatgtttaagaaaacttctcaaatggtcatacacatatata 180

                                                                       
Query: 181 tttgatgaatatagaagatttgctggaagtaaagtaagagttttggatcaacaatttatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tttgatgaatatagaagatttgctggaagtaaagtaagagttttggatcaacaatttatt 240

                                                                       
Query: 241 gaattatttaatttagaagtaccatataacnagaggtataaacctgattggttgaccaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaattatttaatttagaagtaccatataacnagaggtataaacctgattggttgaccaac 300

                 
Query: 301 taattt 306
           ||||||
Sbjct: 301 taattt 306


 Score = 60.0 bits (30), Expect = 2e-09
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 379 gtatnaaaattgaaatgtttcaacgaaaattat 411
           |||||||||||||||||||||||||||||||||
Sbjct: 379 gtatnaaaattgaaatgtttcaacgaaaattat 411


>Contig-U05212-1 (Contig-U05212-1Q) /CSM_Contig/Contig-U05212-1Q.Seq.d
          Length = 546

 Score = 46.1 bits (23), Expect = 3e-05
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 181 tttgatgaatatagaagatttgctggaagtaaagt 215
           ||||| || |||||||||||||| |||||||||||
Sbjct: 419 tttgaagagtatagaagatttgcaggaagtaaagt 453


 Score = 38.2 bits (19), Expect = 0.008
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                              
Query: 118 catagaacaggttgtttagttggatgtttaagaaa 152
           ||||||||||||  | ||||||| |||||||||||
Sbjct: 356 catagaacaggtactgtagttggttgtttaagaaa 390


>Contig-U14510-1 (Contig-U14510-1Q) /CSM_Contig/Contig-U14510-1Q.Seq.d
          Length = 1389

 Score = 36.2 bits (18), Expect = 0.030
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 238 attgaattatttaattta 255
           ||||||||||||||||||
Sbjct: 404 attgaattatttaattta 387


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4254
Number of Sequences: 6905
Number of extensions: 4254
Number of successful extensions: 480
Number of sequences better than 10.0: 141
length of query: 434
length of database: 5,674,871
effective HSP length: 16
effective length of query: 418
effective length of database: 5,564,391
effective search space: 2325915438
effective search space used: 2325915438
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11. 8
Homology vs DNA 
Query= Contig-U06292-1 (Contig-U06292-1Q) /CSM_Contig/Contig-U06292-1Q.Seq.d
         (434 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU261622) Dictyostelium discoideum vegetative cDNA clone:VS...   613   0.0    2
(AR546051) Sequence 1182 from patent US 6747137.                   48   2e-13  3
(C90068) Dictyostelium discoideum slug cDNA, clone SSG293.         46   1e-06  2
(AL427528) clone BA0AB019G08 of library BA0AB from strain CL...    46   3e-06  2
(EH249253) JGI_ACAC2480.rev ACAC Phakopsora pachyrhizi TW72-...    58   7e-06  2
(EH247135) JGI_ACAC12128.rev ACAC Phakopsora pachyrhizi TW72...    58   8e-06  2
(EH247035) JGI_ACAC12073.rev ACAC Phakopsora pachyrhizi TW72...    58   8e-06  2
(DW093386) CLPY463.b1_M19.ab1 CLP(XYZ) lettuce perennis Lact...    50   0.066  1
(EX927670) ll04a12.g7 Cycas ovule - normalized (NYBG) Cycas ...    50   0.066  1
(EX920132) lj39b04.g7 Cycas sporophyll (w/o ovule) (NYBG) Cy...    50   0.066  1
(EX919535) lj32b08.g7 Cycas sporophyll (w/o ovule) (NYBG) Cy...    50   0.066  1
(EX918086) lj15b03.g7 Cycas sporophyll (w/o ovule) (NYBG) Cy...    50   0.066  1
(EW965767) BRHL_05_E23_T7 Headlice composite library with al...    50   0.066  1
(AL408450) T3 end of clone AV0AA008F02 of library AV0AA from...    42   0.13   2
(BX890539) Zebrafish DNA sequence from clone CH211-241B2.          48   0.26   1
(AF366443) Allium cepa clone AGF096 maintainer line sequence.      48   0.26   1
(AC104617) Trypanosoma brucei chromosome 5 clone RPCI93-1P6,...    48   0.26   1
(CU856177) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.26   1
(BH007388) ee66g02.x1 TO1000 Brassica oleracea genomic clone...    48   0.26   1
(AQ947371) Sheared DNA-49I15.TF Sheared DNA Trypanosoma bruc...    48   0.26   1
(EI515821) MUGQ_CH252P518G08T7_GL509_026 CHORI-252 Vervet Mo...    48   0.26   1
(EL486555) CHUS1768.b1_O10.ab1 CHU(LMS) puzzle sunflower Hel...    48   0.26   1
(EE658217) CHES7486.b1_L23.ab1 CHE(LMS) serpentine sunflower...    48   0.26   1
(BE205607) API96 NPI Onion cDNA library Allium cepa cDNA clo...    48   0.26   1
(EY939348) RS2DU16TF RS2(RS) Raphanus sativus cDNA 5', mRNA ...    48   0.26   1
(EY935302) RS2DU16JQ RS2(RS) Raphanus sativus cDNA 3', mRNA ...    48   0.26   1
(EX908051) RS3C440JQ RS3(RT) Raphanus sativus cDNA 3', mRNA ...    48   0.26   1
(EX904104) RS3C440TF RS3(RT) Raphanus sativus cDNA 5', mRNA ...    48   0.26   1
(CR382125) Kluyveromyces lactis strain NRRL Y-1140 chromosom...    46   1.0    1
(AL590867) Human DNA sequence from clone RP11-475C16 on chro...    46   1.0    1
(CU467048) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.0    1
(AC022358) Homo sapiens chromosome 12 clone RP11-682J19 map ...    46   1.0    1
(CZ513050) GMW2-58F17a.g1 GMW2 Glycine max genomic, genomic ...    46   1.0    1
(BI978917) yF10 Old Blush petal SMART library Rosa chinensis...    46   1.0    1
(BI977733) lC02 Old Blush petal SMART library Rosa chinensis...    46   1.0    1
(AM430590) Vitis vinifera contig VV78X234759.34, whole genom...    34   1.1    5
(AC112522) Mus musculus chromosome UNK clone RP23-188B3, WOR...    42   2.9    5
(CU695156) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   3.1    4
(BJ841451) Marchantia polymorpha cDNA clone:lwa12o02, 5' end.      32   3.2    3
(CR854911) Zebrafish DNA sequence from clone DKEY-46O18 in l...    44   4.0    1
(BX545855) Zebrafish DNA sequence from clone CH211-212N6 in ...    44   4.0    1
(AC173115) Mus musculus BAC clone RP23-26D2 from chromosome ...    44   4.0    1
(AC167467) Mus musculus BAC clone RP23-158E17 from chromosom...    44   4.0    1
(AC163610) Mus musculus BAC clone RP23-59P17 from chromosome...    44   4.0    1
(EA377538) Sequence 26361 from patent US 7314974.                  44   4.0    1
(AC025164) Homo sapiens 12 BAC RP11-796E2 (Roswell Park Canc...    44   4.0    1
(AC148458) Xenopus tropicalis clone CH216-24D6, WORKING DRAF...    44   4.0    1
(AC100672) Mus musculus clone RP23-167J9, LOW-PASS SEQUENCE ...    44   4.0    1
(CU928746) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   4.0    1
(AC181741) Strongylocentrotus purpuratus clone R3-1037H04, W...    44   4.0    1
(AC024173) Mus musculus strain C57BL6/J chromosome 13 clone ...    44   4.0    1
(AC012013) Homo sapiens chromosome 12 clone RP11-764L14, WOR...    44   4.0    1
(FH897059) CHO_ONF050xc19f1.ab1 CHO_ONF Nicotiana tabacum ge...    44   4.0    1
(ET409067) S0061N13_SP6 CHORI-214 Salmo salar genomic clone ...    44   4.0    1
(ER339274) 1092344330437 Global-Ocean-Sampling_GS-34-01-01-1...    44   4.0    1
(CW773232) OG_BBa0090O03.r OG_BBa Oryza glaberrima genomic c...    44   4.0    1
(EE640672) CHEM11834.b1_D08.ab1 CHE(LMS) serpentine sunflowe...    44   4.0    1
(DY887120) CeleSEQ3017 Cunninghamella elegans pBluescript (E...    44   4.0    1
(DY887047) CeleSEQ2916 Cunninghamella elegans pBluescript (E...    44   4.0    1
(BA000022) Synechocystis sp. PCC 6803 DNA, complete genome.        44   4.0    1
(EI758452) CHORI520R17O03TF BAC library from the breast cell...    38   4.2    2
(AL928611) Mouse DNA sequence from clone RP23-263O5 on chrom...    38   4.4    5
(FE243537) CAPG7697.rev CAPG Naegleria gruberi amoeba stage ...    40   5.2    2
(EI419593) PV_GBa0007E05.r PV_GBa Phaseolus vulgaris genomic...    36   5.3    2
(FH735098) CHO_OF5007xe04r1.ab1 CHO_OF5 Nicotiana tabacum ge...    38   5.8    2
(AC197974) Myotis lucifugus clone CH235-477O14, WORKING DRAF...    40   6.9    3
(AC019267) Homo sapiens clone RP11-7M4, WORKING DRAFT SEQUEN...    30   7.4    2
(AC008902) Homo sapiens chromosome 5 clone CTD-2249G23, comp...    30   7.7    2
(AC182649) Populus trichocarpa clone Pop1-114O20, complete s...    36   8.0    3
(U43145) Plasmodium chabaudi repeat organellar protein gene,...    30   8.8    2
(DW635351) CLJ364-F18.x1d-t SHGC-CLJ2 Gasterosteus aculeatus...    32   9.9    2

>(AU261622) Dictyostelium discoideum vegetative cDNA clone:VSA637,
           3' end single read.
          Length = 435

 Score =  613 bits (309), Expect(2) = 0.0
 Identities = 315/315 (100%)
 Strand = Plus / Plus


Query: 1   atcgttggtaataaagaaccatttgtagatattccagatgaatatattagagatgcattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atcgttggtaataaagaaccatttgtagatattccagatgaatatattagagatgcattg 60


Query: 61  gtagatttattggatgtgagcaatcatccaatcttaattcattgcaataaagggaaccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gtagatttattggatgtgagcaatcatccaatcttaattcattgcaataaagggaaccat 120


Query: 121 agaacaggttgtttagttggatgtttaagaaaacttctcaaatggtcatacacatatata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agaacaggttgtttagttggatgtttaagaaaacttctcaaatggtcatacacatatata 180


Query: 181 tttgatgaatatagaagatttgctggaagtaaagtaagagttttggatcaacaatttatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tttgatgaatatagaagatttgctggaagtaaagtaagagttttggatcaacaatttatt 240


Query: 241 gaattatttaatttagaagtaccatataacnagaggtataaacctgattggttgaccaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaattatttaatttagaagtaccatataacnagaggtataaacctgattggttgaccaac 300


Query: 301 taattttaanaatgg 315
           |||||||||||||||
Sbjct: 301 taattttaanaatgg 315

 Score =  123 bits (62), Expect(2) = 0.0
 Identities = 77/77 (100%)
 Strand = Plus / Plus


Query: 341 tatttttatnattgtcatcaacatcaattannataatagtatnaaaattgaaatgtttca 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tatttttatnattgtcatcaacatcaattannataatagtatnaaaattgaaatgtttca 400


Query: 401 acgaaaattatnaaaat 417
           |||||||||||||||||
Sbjct: 401 acgaaaattatnaaaat 417

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 433,324,323
Number of extensions: 26056622
Number of successful extensions: 2218747
Number of sequences better than 10.0: 71
Length of query: 434
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 411
Effective length of database: 93,106,754,628
Effective search space: 38266876152108
Effective search space used: 38266876152108
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 6.21
Homology vs Protein 
Query= Contig-U06292-1 (Contig-U06292-1Q) /CSM_Contig/Contig-U06292-1Q.Seq.d
         (434 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE017347_293(AE017347|pid:none) Cryptococcus neoformans var. neo...   123   2e-27
AE016817_197(AE016817|pid:none) Ashbya gossypii (= Eremothecium ...   122   4e-27
AF458342_1(AF458342|pid:none) Arabidopsis thaliana AT4g03960/T24...   121   9e-27
(P53965) RecName: Full=Tyrosine-protein phosphatase SIW14;      ...   120   1e-26
BT033696_1(BT033696|pid:none) Zea mays full-length cDNA clone ZM...   120   1e-26
AP008212_579(AP008212|pid:none) Oryza sativa (japonica cultivar-...   120   2e-26
AY669072_1(AY669072|pid:none) Oryza sativa dual-specificity phos...   120   2e-26
FN392320_1123(FN392320|pid:none) Pichia pastoris GS115 chromosom...   119   3e-26
EU972079_1(EU972079|pid:none) Zea mays clone 374537 tyrosine spe...   119   3e-26
CR380959_294(CR380959|pid:none) Candida glabrata strain CBS138 c...   119   3e-26
CU928173_83(CU928173|pid:none) Zygosaccharomyces rouxii strain C...   117   2e-25
AK227524_1(AK227524|pid:none) Arabidopsis thaliana mRNA for hypo...   115   6e-25
BT033659_1(BT033659|pid:none) Zea mays full-length cDNA clone ZM...   114   8e-25
CR382133_442(CR382133|pid:none) Debaryomyces hansenii strain CBS...   114   1e-24
AF057522_1(AF057522|pid:none) Zea mays hypoxically induced trans...   111   7e-24
EU968721_1(EU968721|pid:none) Zea mays clone 323697 tyrosine spe...   111   9e-24
AM446420_1(AM446420|pid:none) Vitis vinifera contig VV78X024047....   102   3e-21
AM502222_56(AM502222|pid:none) Leishmania infantum chromosome 4.      102   4e-21
AM494941_60(AM494941|pid:none) Leishmania braziliensis chromosom...   100   2e-20
AJ812007_1(AJ812007|pid:none) Aspergillus niger partial gene for...    94   1e-18
CR382130_1045(CR382130|pid:none) Yarrowia lipolytica strain CLIB...    94   1e-18
AC018363_26(AC018363|pid:none) Arabidopsis thaliana chromosome I...    94   1e-18
AC148171_26(AC148171|pid:none) Medicago truncatula clone mth2-30...    93   3e-18
AY085793_1(AY085793|pid:none) Arabidopsis thaliana clone 18232 m...    91   2e-17
AB005242_20(AB005242|pid:none) Arabidopsis thaliana genomic DNA,...    91   2e-17
AE017342_454(AE017342|pid:none) Cryptococcus neoformans var. neo...    87   2e-16
FM992689_926(FM992689|pid:none) Candida dubliniensis CD36 chromo...    85   7e-16
(Q59XY9) RecName: Full=Putative tyrosine-protein phosphatase OCA...    85   7e-16
(Q4P7L6) RecName: Full=Putative tyrosine-protein phosphatase OCA...    84   2e-15
AF077409_3(AF077409|pid:none) Arabidopsis thaliana BAC T24M8.  &...    84   2e-15
FN392320_915(FN392320|pid:none) Pichia pastoris GS115 chromosome...    77   2e-13
AM502243_58(AM502243|pid:none) Leishmania infantum chromosome 25.      75   9e-13
CT005264_58(CT005264|pid:none) Leishmania major strain Friedlin,...    75   9e-13
(Q6CTE4) RecName: Full=Putative tyrosine-protein phosphatase OCA...    74   1e-12
AM494962_218(AM494962|pid:none) Leishmania braziliensis chromoso...    74   2e-12
(A3LW52) RecName: Full=Putative tyrosine-protein phosphatase OCA...    73   4e-12
(Q6BLZ8) RecName: Full=Putative tyrosine-protein phosphatase OCA...    73   4e-12
CU928174_399(CU928174|pid:none) Zygosaccharomyces rouxii strain ...    73   4e-12
(Q75B37) RecName: Full=Putative tyrosine-protein phosphatase OCA...    70   2e-11
AE017344_363(AE017344|pid:none) Cryptococcus neoformans var. neo...    70   2e-11
CR382126_151(CR382126|pid:none) Kluyveromyces lactis strain NRRL...    70   2e-11
AL109652_3(AL109652|pid:none) S.pombe chromosome II cosmid c17A3...    70   2e-11
CR382134_95(CR382134|pid:none) Debaryomyces hansenii strain CBS7...    69   4e-11
CU928171_395(CU928171|pid:none) Kluyveromyces thermotolerans str...    69   5e-11
AY692633_1(AY692633|pid:none) Saccharomyces cerevisiae clone FLH...    67   1e-10
CR380956_432(CR380956|pid:none) Candida glabrata strain CBS138 c...    62   6e-09
CU928180_329(CU928180|pid:none) Kluyveromyces thermotolerans str...    60   2e-08
CU928173_64(CU928173|pid:none) Zygosaccharomyces rouxii strain C...    59   4e-08
CR382125_452(CR382125|pid:none) Kluyveromyces lactis strain NRRL...    58   9e-08
CR382138_1077(CR382138|pid:none) Debaryomyces hansenii strain CB...    58   9e-08
FM992688_1281(FM992688|pid:none) Candida dubliniensis CD36 chrom...    55   6e-07
AE016819_242(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...    55   6e-07
CP000500_31(CP000500|pid:none) Pichia stipitis CBS 6054 chromoso...    55   6e-07
CR380953_214(CR380953|pid:none) Candida glabrata strain CBS138 c...    51   1e-05
CU928179_277(CU928179|pid:none) Zygosaccharomyces rouxii strain ...    50   2e-05
AP008208_2679(AP008208|pid:none) Oryza sativa (japonica cultivar...    49   7e-05
AM920437_1812(AM920437|pid:none) Penicillium chrysogenum Wiscons...    48   1e-04
AY558491_1(AY558491|pid:none) Saccharomyces cerevisiae clone FLH...    47   2e-04
(Q12454) RecName: Full=Putative tyrosine-protein phosphatase OCA...    47   2e-04
CR382123_812(CR382123|pid:none) Kluyveromyces lactis strain NRRL...    47   2e-04
(P25366) RecName: Full=Protein OCA4; AltName: Full=Oxidant-induc...    47   2e-04
FN392321_697(FN392321|pid:none) Pichia pastoris GS115 chromosome...    47   3e-04
AM502222_86(AM502222|pid:none) Leishmania infantum chromosome 4.       46   5e-04
CR382128_539(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...    45   6e-04
AM494941_79(AM494941|pid:none) Leishmania braziliensis chromosom...    44   0.001
CP001390_67(CP001390|pid:none) Geobacter sp. FRC-32, complete ge...    42   0.005
AE017346_421(AE017346|pid:none) Cryptococcus neoformans var. neo...    42   0.009
AM989986_9(AM989986|pid:none) Zygosaccharomyces rouxii strain CB...    42   0.009
CR382138_465(CR382138|pid:none) Debaryomyces hansenii strain CBS...    41   0.011
CP000496_885(CP000496|pid:none) Pichia stipitis CBS 6054 chromos...    41   0.015
FM992688_1123(FM992688|pid:none) Candida dubliniensis CD36 chrom...    40   0.025
CU928165_317(CU928165|pid:none) Kluyveromyces thermotolerans str...    40   0.025
AM989976_5(AM989976|pid:none) Zygosaccharomyces rouxii strain AT...    40   0.033
CT005269_106(CT005269|pid:none) Leishmania major strain Friedlin...    39   0.074
AM502250_143(AM502250|pid:none) Leishmania infantum chromosome 32.     39   0.074
CP000813_1760(CP000813|pid:none) Bacillus pumilus SAFR-032, comp...    38   0.13
AM494969_111(AM494969|pid:none) Leishmania braziliensis chromoso...    37   0.16
AE016815_329(AE016815|pid:none) Ashbya gossypii (= Eremothecium ...    37   0.28
AM263198_1961(AM263198|pid:none) Listeria welshimeri serovar 6b ...    37   0.28
AE017341_171(AE017341|pid:none) Cryptococcus neoformans var. neo...    37   0.28
CR626927_134(CR626927|pid:none) Bacteroides fragilis NCTC 9343, ...    36   0.36
AP006841_170(AP006841|pid:none) Bacteroides fragilis YCH46 DNA, ...    36   0.36
AP008957_2117(AP008957|pid:none) Rhodococcus erythropolis PR4 DN...    36   0.36
AE015928_3303(AE015928|pid:none) Bacteroides thetaiotaomicron VP...    35   0.62
CP000431_6219(CP000431|pid:none) Rhodococcus jostii RHA1, comple...    35   1.1
CP000473_4837(CP000473|pid:none) Solibacter usitatus Ellin6076, ...    35   1.1
AG1688(AG1688) protein-tyrosine/serine phosphatase homolog lin20...    34   1.4
CP001175_610(CP001175|pid:none) Listeria monocytogenes HCC23, co...    34   1.8
CP001089_47(CP001089|pid:none) Geobacter lovleyi SZ, complete ge...    34   1.8
AY587955_1(AY587955|pid:none) Dictyostelium discoideum PTP/DSP-l...    34   1.8
CU638743_471(CU638743|pid:none) Podospora anserina genomic DNA c...    33   2.4
CP000957_29(CP000957|pid:none) Synechococcus sp. PCC 7002 plasmi...    33   2.4
DQ658349_1(DQ658349|pid:none) Emiliania huxleyi clone Plate2_I03...    33   3.1
BT059059_1(BT059059|pid:none) Salmo salar clone ssal-rgf-523-083...    33   3.1
AB019130_1(AB019130|pid:none) Ephydatia fluviatilis mRNA for sPT...    33   4.0
AK041155_1(AK041155|pid:none) Mus musculus adult male aorta and ...    33   4.0
CP000482_2621(CP000482|pid:none) Pelobacter propionicus DSM 2379...    33   4.0
BA000028_2740(BA000028|pid:none) Oceanobacillus iheyensis HTE831...    33   4.0
FN357504_22(FN357504|pid:none) Schistosoma mansoni genome sequen...    33   4.0
CP000699_2003(CP000699|pid:none) Sphingomonas wittichii RW1, com...    32   5.3
FN357709_7(FN357709|pid:none) Schistosoma mansoni genome sequenc...    32   5.3
CR954215_88(CR954215|pid:none) Ostreococcus tauri strain OTTH059...    32   5.3
CP000544_784(CP000544|pid:none) Halorhodospira halophila SL1, co...    32   5.3
EF153770_1(EF153770|pid:none) Aedes aegypti PTEN transcript vari...    32   6.9
CP001147_738(CP001147|pid:none) Thermodesulfovibrio yellowstonii...    32   6.9
EF153768_1(EF153768|pid:none) Aedes aegypti PTEN transcript vari...    32   6.9
AM180355_2342(AM180355|pid:none) Clostridium difficile 630 compl...    32   9.0
EU912438_93(EU912438|pid:none) Vaucheria litorea chloroplast, co...    32   9.0
AC084154_11(AC084154|pid:none) Caenorhabditis elegans cosmid Y22...    32   9.0
CP000613_515(CP000613|pid:none) Rhodospirillum centenum SW, comp...    32   9.0
CP000820_2168(CP000820|pid:none) Frankia sp. EAN1pec, complete g...    32   9.0
CP001322_4167(CP001322|pid:none) Desulfatibacillum alkenivorans ...    32   9.0
AY649372_1(AY649372|pid:none) Xenopus laevis protein phosphatase...    32   9.0
D78610_1(D78610|pid:none) Rat mRNA for protein tyrosine phosphat...    32   9.0
FN357716_1(FN357716|pid:none) Schistosoma mansoni genome sequenc...    32   9.0
AP011115_6341(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp...    32   9.0
AY534752_1(AY534752|pid:none) Xenopus laevis cell division cycle...    32   9.0

>AE017347_293(AE017347|pid:none) Cryptococcus neoformans var.
           neoformans JEC21 chromosome 7, complete sequence.
          Length = 279

 Score =  123 bits (309), Expect = 2e-27
 Identities = 56/85 (65%), Positives = 68/85 (80%)
 Frame = +1

Query: 1   IVGNKEPFVDIPDEYIRDALVDLLDVSNHPILIHCNKGNHRTGCLVGCLRKLLKWSYTYI 180
           I GNKEPF +IP++ I  ALV +LD  NHPILIHCNKG HRTGCL+GC+R+L  WS T I
Sbjct: 142 IPGNKEPFDNIPEDVICAALVAILDRRNHPILIHCNKGKHRTGCLIGCIRRLQAWSLTSI 201

Query: 181 FDEYRRFAGSKVRVLDQQFIELFNL 255
           FDEYRRF+  K R +DQQFI+LF++
Sbjct: 202 FDEYRRFSAPKSRAVDQQFIDLFDI 226

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 604,284,760
Number of extensions: 11122143
Number of successful extensions: 24433
Number of sequences better than 10.0: 117
Number of HSP's gapped: 24416
Number of HSP's successfully gapped: 117
Length of query: 144
Length of database: 1,040,966,779
Length adjustment: 107
Effective length of query: 37
Effective length of database: 698,108,284
Effective search space: 25830006508
Effective search space used: 25830006508
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)
PSORT 

 psg: 0.75  gvh: 0.44  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 16.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U06292-1 is cyt
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0