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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U06288-1
Contig ID Contig-U06288-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U06288-1 (Contig-U06288-1Q) /CSM_Contig/Contig-U06288-1Q.Seq.d
GTTATTCACTTCATTATATTAAAAGAATTTATGAAACAATTTTCGTTCAT
AGATTTAGTCATGGTACAATGCCAATTTTTAATCTTTTTAAAAATTGTTC
ATATTATTGGGGATGTACAGCAATGGTATCATACTTTGTAAATCATCCAC
TCTACACTGAAGCACCAATTGAACGTGTTTACCTTGGTTTAGGATTATGG
ATTATTGGTGAAGTTTTCAATTACATTTGTCATATTCAATTAAGAAATCT
TCGTCCAGCAGGTTCAACAGAACGTAAGATTCCACGTGGTTTATTATTTG
AATTTGTATCATGTCCAAATTATACCGTTGAAATCTTATCTTGGATTGGG
TTCTCAATTCTCACACAAACTTTAACTTCATGGATTTTCGCATTAATGGG
TGCTGCTCAAATGTGGATTTGGGCTGTTGGTAAACATAGAAGATATAGAA
AAGAATTTGGTGATAAATATCCAAAATCAAGAAAAATTTTAATTCCATTT
TTACTTTAAAAAAAAAAAAATAAAAATTAAAAAATAATTAAAACGATTTA
AAATAAAT
Gap no gap
Contig length 558
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 4538474
End point 4537916
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U06288
List of clone(s) 

est1=VSA622Z,1,559
Translated Amino Acid sequence 
YSLHYIKRIYETIFVHRFSHGTMPIFNLFKNCSYYWGCTAMVSYFVNHPLYTEAPIERVY
LGLGLWIIGEVFNYICHIQLRNLRPAGSTERKIPRGLLFEFVSCPNYTVEILSWIGFSIL
TQTLTSWIFALMGAAQMWIWAVGKHRRYRKEFGDKYPKSRKILIPFLL*kkknkn*kiik
ti*nk
Translated Amino Acid sequence (All Frames) 
Frame A:
vihfiilkefmkqfsfidlvmvqcqfliflkivhiigdvqqwyhtl*iihstlkhqlnvf
tlv*dygllvkfsitfvifn*eifvqqvqqnvrfhvvyylnlyhvqiiplksylglgsqf
shkl*lhgfsh*wvllkcgfgllvniedieknlviniqnqekf*fhfyfkkkkikikk*l
krfkin


Frame B:
lftsly*knl*nnfrs*i*swynanf*sf*klfillgmysngiilcksstlh*stn*tcl
pwfrimdyw*sfqlhlsysikkssssrfnrt*dstwfii*icimsklyr*nlildwvlns
htnfnfmdfringccsnvdlgcw*t*ki*kriw**iskikknfnsiftlkkkk*klknn*
ndlk*


Frame C:
YSLHYIKRIYETIFVHRFSHGTMPIFNLFKNCSYYWGCTAMVSYFVNHPLYTEAPIERVY
LGLGLWIIGEVFNYICHIQLRNLRPAGSTERKIPRGLLFEFVSCPNYTVEILSWIGFSIL
TQTLTSWIFALMGAAQMWIWAVGKHRRYRKEFGDKYPKSRKILIPFLL*kkknkn*kiik
ti*nk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06288-1 (Contig-U06288-1Q)
/CSM_Contig/Contig-U06288-1Q.Seq.d
         (558 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06288-1 (Contig-U06288-1Q) /CSM_Contig/Conti...  1005  0.0
Contig-U11433-1 (Contig-U11433-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U09520-1 (Contig-U09520-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U14822-1 (Contig-U14822-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U12177-1 (Contig-U12177-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U12459-1 (Contig-U12459-1Q) /CSM_Contig/Conti...    36  0.039
Contig-U11831-1 (Contig-U11831-1Q) /CSM_Contig/Conti...    36  0.039
Contig-U11755-1 (Contig-U11755-1Q) /CSM_Contig/Conti...    36  0.039
Contig-U01990-1 (Contig-U01990-1Q) /CSM_Contig/Conti...    36  0.039
Contig-U10389-1 (Contig-U10389-1Q) /CSM_Contig/Conti...    32  0.61

>Contig-U06288-1 (Contig-U06288-1Q) /CSM_Contig/Contig-U06288-1Q.Seq.d
          Length = 558

 Score = 1005 bits (507), Expect = 0.0
 Identities = 507/507 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttattcacttcattatattaaaagaatttatgaaacaattttcgttcatagatttagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gttattcacttcattatattaaaagaatttatgaaacaattttcgttcatagatttagtc 60

                                                                       
Query: 61  atggtacaatgccaatttttaatctttttaaaaattgttcatattattggggatgtacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atggtacaatgccaatttttaatctttttaaaaattgttcatattattggggatgtacag 120

                                                                       
Query: 121 caatggtatcatactttgtaaatcatccactctacactgaagcaccaattgaacgtgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caatggtatcatactttgtaaatcatccactctacactgaagcaccaattgaacgtgttt 180

                                                                       
Query: 181 accttggtttaggattatggattattggtgaagttttcaattacatttgtcatattcaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 accttggtttaggattatggattattggtgaagttttcaattacatttgtcatattcaat 240

                                                                       
Query: 241 taagaaatcttcgtccagcaggttcaacagaacgtaagattccacgtggtttattatttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taagaaatcttcgtccagcaggttcaacagaacgtaagattccacgtggtttattatttg 300

                                                                       
Query: 301 aatttgtatcatgtccaaattataccgttgaaatcttatcttggattgggttctcaattc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aatttgtatcatgtccaaattataccgttgaaatcttatcttggattgggttctcaattc 360

                                                                       
Query: 361 tcacacaaactttaacttcatggattttcgcattaatgggtgctgctcaaatgtggattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcacacaaactttaacttcatggattttcgcattaatgggtgctgctcaaatgtggattt 420

                                                                       
Query: 421 gggctgttggtaaacatagaagatatagaaaagaatttggtgataaatatccaaaatcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gggctgttggtaaacatagaagatatagaaaagaatttggtgataaatatccaaaatcaa 480

                                      
Query: 481 gaaaaattttaattccatttttacttt 507
           |||||||||||||||||||||||||||
Sbjct: 481 gaaaaattttaattccatttttacttt 507


>Contig-U11433-1 (Contig-U11433-1Q) /CSM_Contig/Contig-U11433-1Q.Seq.d
          Length = 2001

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 293 attatttgaatttgtatcat 312
           ||||||||||||||||||||
Sbjct: 164 attatttgaatttgtatcat 183


>Contig-U09520-1 (Contig-U09520-1Q) /CSM_Contig/Contig-U09520-1Q.Seq.d
          Length = 1053

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 77  ttttaatctttttaaaaatt 96
           ||||||||||||||||||||
Sbjct: 802 ttttaatctttttaaaaatt 783


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8696
Number of Sequences: 6905
Number of extensions: 8696
Number of successful extensions: 1011
Number of sequences better than 10.0: 358
length of query: 558
length of database: 5,674,871
effective HSP length: 16
effective length of query: 542
effective length of database: 5,564,391
effective search space: 3015899922
effective search space used: 3015899922
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11. 8
Homology vs DNA 
Query= Contig-U06288-1 (Contig-U06288-1Q) /CSM_Contig/Contig-U06288-1Q.Seq.d
         (558 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU261609) Dictyostelium discoideum vegetative cDNA clone:VS...  1005   0.0    1
(BI509689) BB170018B10A07.5 Bee Brain Normalized/Subtracted ...    62   3e-13  2
(CV042050) tah93g03.x2 Hydra EST UCI 5 Hydra magnipapillata ...    48   9e-09  3
(CD267214) tab70e03.x1 Hydra EST -III Hydra magnipapillata c...    48   7e-08  3
(CX836024) tal55f04.x2 Hydra EST UCI 7 Hydra magnipapillata ...    48   8e-08  3
(CV564871) taj91a02.x1 Hydra EST UCI 6 Hydra magnipapillata ...    48   1e-07  3
(DT615899) ACAH-aab12g03.g1 Hydra_EST_UCI-10 Hydra magnipapi...    48   1e-07  2
(CV563999) taj81h03.y1 Hydra EST UCI 6 Hydra magnipapillata ...    48   1e-07  2
(DT620075) ACAH-aaa18b03.g1 Hydra_EST_UCI-10 Hydra magnipapi...    48   1e-07  2
(CN768706) taf18c10.x1 Hydra EST Darmstadt I Hydra magnipapi...    48   1e-07  2
(DN245355) ACAE-aaa56d23.g1 Hydra EST UCI 5 Hydra magnipapil...    48   1e-07  2
(DT607380) ACAG-aaa83b03.g1 Hydra_EST_UCI-9 Hydra magnipapil...    48   1e-07  2
(DT616306) ACAH-aaa65f06.g1 Hydra_EST_UCI-10 Hydra magnipapi...    48   1e-07  2
(CX832725) ACAC-aaa39f09.g1 Hydra EST UCI 7 Hydra magnipapil...    48   1e-07  2
(DT337581) JBW060A08.b_064.abi Pineapple week 5-10 nematode-...    48   6e-07  3
(CF980927) re10f01.y1 Meloidogyne incognita female SL1 pGEM ...    48   2e-06  2
(DN137542) ACAE-aaa06o01.g1 Hydra EST UCI 5 Hydra magnipapil...    40   3e-04  2
(CO538304) tah82c05.y1 Hydra EST UCI 5 Hydra magnipapillata ...    36   0.005  2
(CR933461) Paramecium tetraurelia, Small GTPase rab, putativ...    48   0.042  2
(DB776605) Apis mellifera head cDNA, RIKEN full-length enric...    50   0.085  1
(DB765561) Apis mellifera head cDNA, RIKEN full-length enric...    50   0.085  1
(DB759273) Apis mellifera head cDNA, RIKEN full-length enric...    50   0.085  1
(DB758665) Apis mellifera head cDNA, RIKEN full-length enric...    50   0.085  1
(DR395412) USDA-FP_155347 Adult Alate Aphis gossypii (WHAGA)...    40   0.11   3
(AM479899) Vitis vinifera contig VV78X065230.9, whole genome...    38   0.21   2
(AM457332) Vitis vinifera, whole genome shotgun sequence, co...    38   0.21   2
(AM485587) Vitis vinifera, whole genome shotgun sequence, co...    38   0.22   2
(AM479452) Vitis vinifera, whole genome shotgun sequence, co...    38   0.22   2
(AM488013) Vitis vinifera contig VV78X055863.16, whole genom...    38   0.22   2
(DY229293) ID0AAK6YJ24CM1 ApHL3SD Acyrthosiphon pisum cDNA c...    30   0.22   4
(AM481243) Vitis vinifera contig VV78X024453.13, whole genom...    38   0.23   2
(AM440615) Vitis vinifera contig VV78X237156.4, whole genome...    38   0.24   2
(EX643088) 256649441 Pea aphid whole body normalized full le...    30   0.24   4
(FF310184) 279378239 Pea aphid whole body normalized full le...    30   0.25   4
(EX646923) 256713957 Pea aphid whole body normalized full le...    30   0.25   4
(FF309704) 279376572 Pea aphid whole body normalized full le...    30   0.26   4
(FF324121) 280422021 Pea aphid whole body normalized full le...    30   0.29   4
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    34   0.30   13
(BQ090359) rc64e11.y1 Meloidogyne hapla egg pAMP1 v1 Meloido...    48   0.34   1
(AC213006) Pan troglodytes BAC clone CH251-68I11 from chromo...    40   0.38   3
(AC220944) Pan troglodytes chromosome 7 clone CH251-656L19, ...    40   0.42   3
(AF165818) Guillardia theta nucleomorph chromosome 1, comple...    44   0.42   3
(AM479233) Vitis vinifera contig VV78X037493.1, whole genome...    34   0.44   3
(CP000882) Hemiselmis andersenii chromosome 2, complete sequ...    40   0.47   4
(CU695053) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   0.47   4
(EK209082) 1095460091666 Global-Ocean-Sampling_GS-31-01-01-1...    36   0.59   2
(AZ678668) ENTHO47TR Entamoeba histolytica Sheared DNA Entam...    42   0.77   2
(AC185964) Mus musculus chromosome UNK clone CH33-204D11, co...    40   0.86   6
(AC181691) Strongylocentrotus purpuratus clone R3-1040F17, W...    40   1.0    4
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    32   1.0    9
(AC165347) Mus musculus BAC clone RP23-348B21 from chromosom...    46   1.3    1
(AC124395) Mus musculus BAC clone RP24-342J3 from 13, comple...    46   1.3    1
(AC073574) Homo sapiens 12 BAC RP11-393J8 (Roswell Park Canc...    46   1.3    1
(AC068772) Homo sapiens chromosome 12 clone RP11-907O21, WOR...    46   1.3    1
(AC055742) Homo sapiens chromosome 3 clone RP11-88M1, *** SE...    46   1.3    1
(AC167451) Bos taurus clone CH240-197J13, WORKING DRAFT SEQU...    46   1.3    1
(AC019285) Homo sapiens clone RP11-20O5, WORKING DRAFT SEQUE...    46   1.3    1
(EK116353) 1092963248471 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.3    1
(EK106621) 1092963056299 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.3    1
(EJ874695) 1093018362869 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.3    1
(EJ783255) 1093017295361 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.3    1
(ED259351) AUAC-aaz45a04.b1 Ascaris suum whole genome shotgu...    46   1.3    1
(DY070217) 001020BUTA002599HT BUTA Bos taurus cDNA 5', mRNA ...    46   1.3    1
(CT883877) Phaeodactylum tricornutum 5-PRIME EST from clone ...    46   1.3    1
(CP000727) Clostridium botulinum A str. Hall, complete genome.     38   1.4    13
(CP000726) Clostridium botulinum A str. ATCC 19397, complete...    38   1.7    13
(AC024180) Homo sapiens chromosome 3 clone RP11-172A10, WORK...    38   1.7    5
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    36   1.9    11
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6...    34   2.1    9
(AC212992) Mus musculus chromosome Y clone CH36-186A16, WORK...    40   2.2    5
(AC226686) Mus musculus chromosome Y clone RP24-125G7, WORKI...    40   2.3    5
(AC173028) Bos taurus clone CH240-279G8, WORKING DRAFT SEQUE...    42   2.4    5
(AC214152) Mus musculus chromosome Y clone RP24-488P2, WORKI...    40   2.4    5
(AC098302) Rattus norvegicus clone CH230-1N1, *** SEQUENCING...    34   2.6    2
(AC134557) Mus musculus chromosome UNK clone RP24-323H18, co...    40   2.6    5
(FH982048) CHO_OF6830xd21r1.ab1 CHO_OF6 Nicotiana tabacum ge...    40   2.6    2
(AC125883) Rattus norvegicus clone CH230-459G21, *** SEQUENC...    34   2.6    2
(AC183365) Dasypus novemcinctus clone VMRC5-419P2, WORKING D...    44   3.0    3
(AC147622) Mus musculus BAC clone RP24-318A22 from Y, comple...    40   3.2    4
(AC123928) Mus musculus BAC clone RP24-390L8 from chromosome...    40   3.2    4
(AC147606) Mus musculus BAC clone RP24-359I4 from chromosome...    40   3.2    4
(AC200894) Mus musculus BAC clone CH36-181O11 from chromosom...    40   3.2    4
(AC182252) Mus musculus BAC clone RP24-316G13 from chromosom...    40   3.3    4
(AC225615) Mus musculus chromosome Y clone CH36-399D20, WORK...    40   3.5    4
(AC147166) Mus musculus BAC clone RP24-277F21 from chromosom...    40   3.5    5
(AC175707) Mus musculus BAC clone RP24-89D4 from chromosome ...    40   3.8    5
(AC147461) Mus musculus BAC clone RP24-304I19 from chromosom...    40   4.0    3
(AC212853) Mus musculus chromosome Y clone CH36-116M15, WORK...    40   4.0    4
(AC192087) Mus musculus chromosome Y clone CH36-79G4, WORKIN...    40   4.0    4
(AM439634) Vitis vinifera, whole genome shotgun sequence, co...    38   4.0    3
(AC147150) Mus musculus BAC clone RP24-386L15 from chromosom...    40   4.1    4
(CP000361) Arcobacter butzleri RM4018, complete genome.            34   4.2    12
(AC104085) Homo sapiens chromosome 4 clone RP11-607E8, WORKI...    34   4.4    4
(AC194982) Mus musculus BAC clone CH36-344B19 from chromosom...    40   4.4    4
(CU302361) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   4.5    3
(AC108162) Homo sapiens BAC clone RP11-686G17 from 4, comple...    44   4.5    3
(AC147264) Mus musculus BAC clone RP24-225P12 from chromosom...    40   4.5    4
(AC147991) Mus musculus BAC clone RP24-362D11 from chromosom...    40   4.7    4
(AC134541) Mus musculus BAC clone RP24-405G18 from Y, comple...    40   4.9    4
(AC147372) Mus musculus BAC clone RP24-212L10 from chromosom...    40   5.1    4

>(AU261609) Dictyostelium discoideum vegetative cDNA clone:VSA622,
           3' end single read.
          Length = 559

 Score = 1005 bits (507), Expect = 0.0
 Identities = 507/507 (100%)
 Strand = Plus / Plus


Query: 1   gttattcacttcattatattaaaagaatttatgaaacaattttcgttcatagatttagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gttattcacttcattatattaaaagaatttatgaaacaattttcgttcatagatttagtc 60


Query: 61  atggtacaatgccaatttttaatctttttaaaaattgttcatattattggggatgtacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atggtacaatgccaatttttaatctttttaaaaattgttcatattattggggatgtacag 120


Query: 121 caatggtatcatactttgtaaatcatccactctacactgaagcaccaattgaacgtgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caatggtatcatactttgtaaatcatccactctacactgaagcaccaattgaacgtgttt 180


Query: 181 accttggtttaggattatggattattggtgaagttttcaattacatttgtcatattcaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 accttggtttaggattatggattattggtgaagttttcaattacatttgtcatattcaat 240


Query: 241 taagaaatcttcgtccagcaggttcaacagaacgtaagattccacgtggtttattatttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taagaaatcttcgtccagcaggttcaacagaacgtaagattccacgtggtttattatttg 300


Query: 301 aatttgtatcatgtccaaattataccgttgaaatcttatcttggattgggttctcaattc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aatttgtatcatgtccaaattataccgttgaaatcttatcttggattgggttctcaattc 360


Query: 361 tcacacaaactttaacttcatggattttcgcattaatgggtgctgctcaaatgtggattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcacacaaactttaacttcatggattttcgcattaatgggtgctgctcaaatgtggattt 420


Query: 421 gggctgttggtaaacatagaagatatagaaaagaatttggtgataaatatccaaaatcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gggctgttggtaaacatagaagatatagaaaagaatttggtgataaatatccaaaatcaa 480


Query: 481 gaaaaattttaattccatttttacttt 507
           |||||||||||||||||||||||||||
Sbjct: 481 gaaaaattttaattccatttttacttt 507

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 662,599,716
Number of extensions: 41767607
Number of successful extensions: 3592982
Number of sequences better than 10.0: 224
Length of query: 558
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 535
Effective length of database: 93,106,754,628
Effective search space: 49812113725980
Effective search space used: 49812113725980
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.21
Homology vs Protein 
Query= Contig-U06288-1 (Contig-U06288-1Q) /CSM_Contig/Contig-U06288-1Q.Seq.d
         (558 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55C17) RecName: Full=Trans-2,3-enoyl-CoA reductase;          S...   344   8e-94
AC006608_6(AC006608|pid:none) Caenorhabditis elegans cosmid C15F...   192   5e-48
AE014296_758(AE014296|pid:none) Drosophila melanogaster chromoso...   192   6e-48
BT050505_1(BT050505|pid:none) Drosophila melanogaster FI06688 fu...   192   6e-48
AY061621_1(AY061621|pid:none) Drosophila melanogaster SD09294 fu...   189   4e-47
(Q9CY27) RecName: Full=Synaptic glycoprotein SC2;          EC=1....   188   7e-47
DQ507291_1(DQ507291|pid:none) Belgica antarctica clone Ba-U24 sy...   188   9e-47
AY892591_1(AY892591|pid:none) Synthetic construct Homo sapiens c...   187   1e-46
AK094087_1(AK094087|pid:none) Homo sapiens cDNA FLJ36768 fis, cl...   187   1e-46
BC000174_1(BC000174|pid:none) Homo sapiens, clone IMAGE:2901253,...   187   1e-46
EF215009_1(EF215009|pid:none) Callithrix jacchus clone P19-42.2_...   187   2e-46
EF214961_1(EF214961|pid:none) Callithrix jacchus clone L17-49.2_...   187   2e-46
BC056018_1(BC056018|pid:none) Xenopus laevis glycoprotein, synap...   182   4e-45
FN319723_1(FN319723|pid:none) Schistosoma japonicum isolate Anhu...   181   1e-44
FN319721_1(FN319721|pid:none) Schistosoma japonicum isolate Anhu...   179   6e-44
FN319720_1(FN319720|pid:none) Schistosoma japonicum isolate Anhu...   179   6e-44
FN357606_10(FN357606|pid:none) Schistosoma mansoni genome sequen...   176   3e-43
DQ000300_1(DQ000300|pid:none) Nicotiana benthamiana TSC13 protei...   174   1e-42
AL132975_2(AL132975|pid:none) Arabidopsis thaliana DNA chromosom...   174   2e-42
EU958961_1(EU958961|pid:none) Zea mays clone 208500 unknown mRNA.     173   3e-42
BT033206_1(BT033206|pid:none) Zea mays full-length cDNA clone ZM...   173   3e-42
AM452889_1(AM452889|pid:none) Vitis vinifera contig VV78X021186....   172   7e-42
BT051895_1(BT051895|pid:none) Medicago truncatula clone MTYF5_F6...   172   7e-42
EF087140_1(EF087140|pid:none) Picea sitchensis clone WS02743_F02...   170   2e-41
CP001328_470(CP001328|pid:none) Micromonas sp. RCC299 chromosome...   169   3e-41
EU001743_1(EU001743|pid:none) Gossypium hirsutum trans-2-enoyl-C...   168   8e-41
EU965660_1(EU965660|pid:none) Zea mays clone 287783 synaptic gly...   168   8e-41
BC123021_1(BC123021|pid:none) Xenopus tropicalis hypothetical pr...   167   2e-40
CR954203_400(CR954203|pid:none) Ostreococcus tauri strain OTTH05...   166   4e-40
CP000583_414(CP000583|pid:none) Ostreococcus lucimarinus CCE9901...   164   1e-39
EU001742_1(EU001742|pid:none) Gossypium hirsutum trans-2-enoyl-C...   164   2e-39
AB171490_1(AB171490|pid:none) Macaca fascicularis brain cDNA clo...   160   2e-38
AM920437_700(AM920437|pid:none) Penicillium chrysogenum Wisconsi...   156   4e-37
CR382127_164(CR382127|pid:none) Yarrowia lipolytica strain CLIB1...   152   7e-36
AM270079_34(AM270079|pid:none) Aspergillus niger contig An04c018...   150   3e-35
CU571167_4(CU571167|pid:none) Zebrafish DNA sequence from clone ...   149   5e-35
AK299134_1(AK299134|pid:none) Homo sapiens cDNA FLJ58248 complet...   149   5e-35
CT005264_184(CT005264|pid:none) Leishmania major strain Friedlin...   148   1e-34
CR382134_40(CR382134|pid:none) Debaryomyces hansenii strain CBS7...   147   2e-34
AM502243_187(AM502243|pid:none) Leishmania infantum chromosome 25.    146   3e-34
AC105379_26(AC105379|pid:none) Trypanosoma brucei chromosome 3 c...   140   3e-32
CR940352_639(CR940352|pid:none) Theileria annulata strain Ankara...   129   7e-29
AP007169_76(AP007169|pid:none) Aspergillus oryzae RIB40 genomic ...   125   7e-28
BX284747_3(BX284747|pid:none) Neurospora crassa DNA linkage grou...   122   8e-27
(Q5HYJ1) RecName: Full=Steroid 5-alpha-reductase 2-like 2 protei...   122   8e-27
AK052378_1(AK052378|pid:none) Mus musculus 13 days embryo heart ...   121   1e-26
AK052302_1(AK052302|pid:none) Mus musculus 13 days embryo heart ...   121   1e-26
(Q8BFZ1) RecName: Full=Steroid 5-alpha-reductase 2-like 2 protei...   121   1e-26
(Q3SZ89) RecName: Full=Steroid 5-alpha-reductase 2-like 2 protei...   120   2e-26
CU638743_431(CU638743|pid:none) Podospora anserina genomic DNA c...   117   2e-25
(Q99190) RecName: Full=Enoyl reductase TSC13;          EC=1.3.1....   109   4e-23
AE017345_186(AE017345|pid:none) Cryptococcus neoformans var. neo...   108   9e-23
CU928173_207(CU928173|pid:none) Zygosaccharomyces rouxii strain ...   105   8e-22
CU571167_5(CU571167|pid:none) Zebrafish DNA sequence from clone ...   101   1e-20
EF576066_1(EF576066|pid:none) Oryza sativa (indica cultivar-grou...   100   4e-20
CR382123_187(CR382123|pid:none) Kluyveromyces lactis strain NRRL...    98   1e-19
CU571167_6(CU571167|pid:none) Zebrafish DNA sequence from clone ...    93   5e-18
CR450809_7(CR450809|pid:none) Zebrafish DNA sequence from clone ...    87   2e-16
AF380656_1(AF380656|pid:none) Arabidopsis thaliana AT5g16010/F1N...    85   1e-15
(P24008) RecName: Full=3-oxo-5-alpha-steroid 4-dehydrogenase 1; ...    81   2e-14
BC079863_1(BC079863|pid:none) Mus musculus steroid 5 alpha-reduc...    78   1e-13
(Q68FF9) RecName: Full=3-oxo-5-alpha-steroid 4-dehydrogenase 1; ...    78   1e-13
BC094503_1(BC094503|pid:none) Mus musculus steroid 5 alpha-reduc...    78   2e-13
EU956280_1(EU956280|pid:none) Zea mays clone 1560124 3-oxo-5-alp...    77   3e-13
AK101345_1(AK101345|pid:none) Oryza sativa Japonica Group cDNA c...    75   1e-12
AP003847_28(AP003847|pid:none) Oryza sativa Japonica Group genom...    73   4e-12
T22101(T22101) hypothetical protein F42F12.3 - Caenorhabditis el...    72   7e-12
BX511155_2(BX511155|pid:none) Zebrafish DNA sequence from clone ...    72   1e-11
(Q28892) RecName: Full=3-oxo-5-alpha-steroid 4-dehydrogenase 2; ...    71   2e-11
BC124451_1(BC124451|pid:none) Danio rerio steroid-5-alpha-reduct...    71   2e-11
BT056406_1(BT056406|pid:none) Salmo salar clone ssal-eve-521-315...    71   2e-11
BT048684_1(BT048684|pid:none) Salmo salar clone ssal-rgb2-502-01...    70   4e-11
(P31213) RecName: Full=3-oxo-5-alpha-steroid 4-dehydrogenase 2; ...    69   8e-11
BC095069_1(BC095069|pid:none) Danio rerio zgc:112208, mRNA (cDNA...    69   1e-10
AK297511_1(AK297511|pid:none) Homo sapiens cDNA FLJ52969 complet...    68   1e-10
AY141136_1(AY141136|pid:none) Gossypium hirsutum steroid 5-alpha...    67   2e-10
DQ116446_1(DQ116446|pid:none) Gossypium hirsutum steroid 5-alpha...    67   4e-10
AB377306_1(AB377306|pid:none) Rana rugosa mRNA for 5alpha-reduct...    66   5e-10
BT066071_1(BT066071|pid:none) Zea mays full-length cDNA clone ZM...    64   2e-09
(Q99N99) RecName: Full=3-oxo-5-alpha-steroid 4-dehydrogenase 2; ...    64   2e-09
BC141749_1(BC141749|pid:none) Xenopus laevis hypothetical protei...    63   6e-09
AE014186_351(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    62   8e-09
AF203341_2(AF203341|pid:none) Glycine max chloroplast carboxyl t...    60   3e-08
AF136721_1(AF136721|pid:none) Canis familiaris prostatic steroid...    60   5e-08
(Q8AVI9) RecName: Full=3-oxo-5-alpha-steroid 4-dehydrogenase 3; ...    59   7e-08
AP006841_3745(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,...    59   9e-08
CU458896_2795(CU458896|pid:none) Mycobacterium abscessus chromos...    59   1e-07
EF537017_1(EF537017|pid:none) Oryzias latipes steroid 5-alpha-re...    58   1e-07
AF136720_1(AF136720|pid:none) Canis familiaris prostatic steroid...    58   1e-07
AY573897_1(AY573897|pid:none) Pisum sativum 5-alpha-reductase mR...    58   1e-07
EF089399_91(EF089399|pid:none) Uncultured marine bacterium EB0_3...    57   3e-07
BC093319_1(BC093319|pid:none) Danio rerio zgc:112455, mRNA (cDNA...    55   2e-06
CR954203_55(CR954203|pid:none) Ostreococcus tauri strain OTTH059...    55   2e-06
(Q9H8P0) RecName: Full=3-oxo-5-alpha-steroid 4-dehydrogenase 3; ...    55   2e-06
EF082799_1(EF082799|pid:none) Picea sitchensis clone WS0278_K20 ...    54   3e-06
AK040198_1(AK040198|pid:none) Mus musculus 0 day neonate thymus ...    53   6e-06
CP000325_2645(CP000325|pid:none) Mycobacterium ulcerans Agy99, c...    52   8e-06
T18648(T18648) hypothetical protein B0024.13 - Caenorhabditis el...    51   2e-05
Z71178_13(Z71178|pid:none) Caenorhabditis elegans Cosmid B0024, ...    51   2e-05
AC010926_21(AC010926|pid:none) Arabidopsis thaliana chromosome 1...    50   3e-05
CP000583_61(CP000583|pid:none) Ostreococcus lucimarinus CCE9901 ...    50   3e-05
AF502086_1(AF502086|pid:none) Ustilago maydis steroid 5alpha-red...    50   4e-05
CP001330_547(CP001330|pid:none) Micromonas sp. RCC299 chromosome...    49   9e-05
AY812760_1(AY812760|pid:none) Schistosoma japonicum SJCHGC01345 ...    45   0.001
AY222897_1(AY222897|pid:none) Schistosoma japonicum clone ZZD102...    45   0.002
AP008213_1019(AP008213|pid:none) Oryza sativa (japonica cultivar...    44   0.003
AK241048_1(AK241048|pid:none) Oryza sativa Japonica Group cDNA, ...    44   0.003
AC159420_24(AC159420|pid:none) Trypanosoma brucei chromosome 8 c...    43   0.006
BX088688_3(BX088688|pid:none) Zebrafish DNA sequence from clone ...    43   0.006
AY772257_1(AY772257|pid:none) Humulus lupulus 3-oxo-5-alpha-ster...    40   0.031
AH1148(AH1148) hypothetical protein lmo0591 [imported] - Listeri...    40   0.053
CU928165_171(CU928165|pid:none) Kluyveromyces thermotolerans str...    39   0.091
CP001175_2012(CP001175|pid:none) Listeria monocytogenes HCC23, c...    38   0.20
BC115469_1(BC115469|pid:none) Mus musculus steroid 5 alpha-reduc...    38   0.20
FM242711_596(FM242711|pid:none) Listeria monocytogenes Clip81459...    37   0.27
AM406671_1283(AM406671|pid:none) Lactococcus lactis subsp. cremo...    37   0.27
CP000454_1326(CP000454|pid:none) Arthrobacter sp. FB24, complete...    37   0.27
(P40526) RecName: Full=Protein DFG10;  &S48430(S48430) &Z38060_2...    37   0.27
AM263198_558(AM263198|pid:none) Listeria welshimeri serovar 6b s...    37   0.35
AK082819_1(AK082819|pid:none) Mus musculus ES cells cDNA, RIKEN ...    37   0.45
CP001213_1095(CP001213|pid:none) Bifidobacterium animalis subsp....    37   0.45
AH1507(AH1507) hypothetical membrane protein homolog lin0600 [im...    37   0.45
CP000875_801(CP000875|pid:none) Herpetosiphon aurantiacus ATCC 2...    37   0.45
CP000910_2882(CP000910|pid:none) Renibacterium salmoninarum ATCC...    37   0.45
BC107828_1(BC107828|pid:none) Danio rerio wu:fc47e12, mRNA (cDNA...    36   0.77
CR380958_21(CR380958|pid:none) Candida glabrata strain CBS138 ch...    36   0.77
CP000453_689(CP000453|pid:none) Alkalilimnicola ehrlichii MLHE-1...    36   0.77
CP000854_756(CP000854|pid:none) Mycobacterium marinum M, complet...    35   1.0
CP000325_1164(CP000325|pid:none) Mycobacterium ulcerans Agy99, c...    35   1.0
CP000509_4486(CP000509|pid:none) Nocardioides sp. JS614, complet...    35   1.3
CP001110_2532(CP001110|pid:none) Pelodictyon phaeoclathratiforme...    35   1.3
AJ833002_15(AJ833002|pid:none) Serratia marcescens prodigiosin b...    35   1.3
CP000896_1370(CP000896|pid:none) Acholeplasma laidlawii PG-8A, c...    35   1.7
CU468135_1864(CU468135|pid:none) Erwinia tasmaniensis strain ET1...    34   2.9
BT036728_1(BT036728|pid:none) Zea mays full-length cDNA clone ZM...    33   3.8
BT070042_1(BT070042|pid:none) Zea mays full-length cDNA clone ZM...    33   3.8
CP000316_1160(CP000316|pid:none) Polaromonas sp. JS666, complete...    33   5.0
BX284749_11(BX284749|pid:none) Neurospora crassa DNA linkage gro...    33   5.0
AE014133_309(AE014133|pid:none) Streptococcus mutans UA159, comp...    33   5.0
BC158462_1(BC158462|pid:none) Xenopus tropicalis hypothetical pr...    33   5.0
FM992689_815(FM992689|pid:none) Candida dubliniensis CD36 chromo...    33   6.5
AC159438_10(AC159438|pid:none) Trypanosoma brucei chromosome 8 c...    33   6.5
CP001103_163(CP001103|pid:none) Alteromonas macleodii 'Deep ecot...    33   6.5
CP001096_3548(CP001096|pid:none) Rhodopseudomonas palustris TIE-...    33   6.5
FJ178779_1(FJ178779|pid:none) Trypanosoma brucei nuclear non-can...    33   6.5
AP011115_2288(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp...    32   8.5
CP001341_1046(CP001341|pid:none) Arthrobacter chlorophenolicus A...    32   8.5
EU520641_13(EU520641|pid:none) Phrynus sp. 1 SEM-2008 mitochondr...    32   8.5

>(Q55C17) RecName: Full=Trans-2,3-enoyl-CoA reductase;
           Short=TER;          EC=1.3.1.-; AltName: Full=Synaptic
           glycoprotein SC2-like protein;
          Length = 300

 Score =  344 bits (883), Expect = 8e-94
 Identities = 160/160 (100%), Positives = 160/160 (100%)
 Frame = +3

Query: 3   YSLHYIKRIYETIFVHRFSHGTMPIFNLFKNCSYYWGCTAMVSYFVNHPLYTEAPIERVY 182
           YSLHYIKRIYETIFVHRFSHGTMPIFNLFKNCSYYWGCTAMVSYFVNHPLYTEAPIERVY
Sbjct: 133 YSLHYIKRIYETIFVHRFSHGTMPIFNLFKNCSYYWGCTAMVSYFVNHPLYTEAPIERVY 192

Query: 183 LGLGLWIIGEVFNYICHIQLRNLRPAGSTERKIPRGLLFEFVSCPNYTVEILSWIGFSIL 362
           LGLGLWIIGEVFNYICHIQLRNLRPAGSTERKIPRGLLFEFVSCPNYTVEILSWIGFSIL
Sbjct: 193 LGLGLWIIGEVFNYICHIQLRNLRPAGSTERKIPRGLLFEFVSCPNYTVEILSWIGFSIL 252

Query: 363 TQTLTSWIFALMGAAQMWIWAVGKHRRYRKEFGDKYPKSR 482
           TQTLTSWIFALMGAAQMWIWAVGKHRRYRKEFGDKYPKSR
Sbjct: 253 TQTLTSWIFALMGAAQMWIWAVGKHRRYRKEFGDKYPKSR 292

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 940,058,498
Number of extensions: 20062517
Number of successful extensions: 41757
Number of sequences better than 10.0: 148
Number of HSP's gapped: 41654
Number of HSP's successfully gapped: 148
Length of query: 186
Length of database: 1,040,966,779
Length adjustment: 121
Effective length of query: 65
Effective length of database: 653,248,294
Effective search space: 42461139110
Effective search space used: 42461139110
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.75  gvh: 0.41  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.04
 nuc: 0.14  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for Contig-U06288-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0