NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U06283-1
Contig ID Contig-U06283-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U06283-1 (Contig-U06283-1Q) /CSM_Contig/Contig-U06283-1Q.Seq.d
CCACGCCGTCCGAAAAAAAAAATAAATAAATATATATATAAAAAAAATAA
AATGAAATTAATTTTAAGTTTATTAACTTTATCAATTTTATATTGGGCTA
ATACTGTAAATGCAATTAGTGGTCAAGTAACATATTATAATGATGTAGGT
TATGGCGCCTGTGGTACTGCTATTGATGCAAATACACAATTTTTAGCAGC
AGTTCCACCAGCTTATTGGACTACAGCAAATCCAAATTTAGATCCAGTTT
GTGGTAAACAAGTAAAATTAACAATATAATGGTAATTCAATTACACTTCC
AGTACGTGATAAATGCCCAGGTTGTCCAACTAATAATATTGATATTAGTG
CTCCTGCATTTACTCAATTAGTAGGTAGTCTTGGACCTGGTAGAGTTAGT
GTAACTTGGGAATTCCTTGGTGGTAGTTCAAGTGGTGGTACAACAGGTAC
AGTTTCAACAACAACTGGTGGTAGTGGTACTTGTCCAAGAACTGCAACAG
TTAGTGCAGGTCAAGGCTGTTATGACGTATGGGTATCAAATTGTAATAAT
GCTTGGGATGAGAACCAATTCTACGCTGCTAATCCAGGTGTATCATGTAC
TGCTCTTCAAGTTGGTCAAAAATTATGTTGTGGTGGTACATCATCATCAT
CTTCAACAACTGGGTAGTGCTTTCTTGTTCAAGAAAAGGTACTGTTGATG
CAGGTCAAAGGTTGTTATGATGTATGGGTATCAAAATGTAATAATGCATG
GAATGAGAATCAATTCTATGCTGCAAATCCAGGTGTTGTTTGTACTGATC
TTCAAGTTGGCCATACAATTATGTTGTAATTAATAATTTCAAATTAATAA
TTGATGAATATTATTAAGATAAAATAAAAACAATATTTTTTGATAGCAAA
AAAAAAAAAAAAAAA
Gap no gap
Contig length 915
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 12
Number of EST 15
Link to clone list U06283
List of clone(s) 

est1=VSI238E,1,892
est2=VSI190E,5,892
est3=VSI412E,12,900
est4=VSJ530F,42,393
est5=VSC464E,253,899
est6=VSB701Z,265,913
est7=VSC889Z,329,901
est8=VSH896F,360,907
est9=VSH896Z,385,883
est10=VSC358Z,386,899
est11=VSA583E,394,916
est12=VSJ825F,558,907
est13=VSJ825Z,558,882
est14=VSH107F,564,907
est15=VSH107Z,564,832
Translated Amino Acid sequence 
havrkkk*iniyikkik*n*f*vy*lyqfyiglil*mqlvvk*hiimm*vmapvvlllmq
ihnf*qqfhqliglqqiqi*iqfvvnk*n*QYNGNSITLPVRDKCPGCPTNNIDISAPAF
TQLVGSLGPGRVSVTWEFLGGSSSGGTTGTVSTTTGGSGTCPRTATVSAGQGCYDVWVSN
CNNAWDENQFYAANPGVSCTALQVGQKLCCGGTSSSSSTTG*cflvqekvllmqvkgcyd
vwvskcnnawnenqfyaanpgvvctdlqvghtiml*liisn**lmniikik*kqyfliak
kkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
prrpkkkinkyiykknkmklilslltlsilywantvnaisgqvtyyndvgygacgtaida
ntqflaavppaywttanpnldpvcgkqvklti*w*fnytsst**mprlsn**y*y*csci
ysisr*swtw*s*cnlgipww*fkwwynrysfnnnww*wylskncns*crsrll*rmgik
l**clg*epilrc*srcimycssswskimlwwyiiiifnnwvvlscsrkgtvdagqrll*
cmgikm**cme*esilccksrccly*ssswpynyvvinnfkliideyy*dkiktiffdsk
kkkkk


Frame B:
havrkkk*iniyikkik*n*f*vy*lyqfyiglil*mqlvvk*hiimm*vmapvvlllmq
ihnf*qqfhqliglqqiqi*iqfvvnk*n*QYNGNSITLPVRDKCPGCPTNNIDISAPAF
TQLVGSLGPGRVSVTWEFLGGSSSGGTTGTVSTTTGGSGTCPRTATVSAGQGCYDVWVSN
CNNAWDENQFYAANPGVSCTALQVGQKLCCGGTSSSSSTTG*cflvqekvllmqvkgcyd
vwvskcnnawnenqfyaanpgvvctdlqvghtiml*liisn**lmniikik*kqyfliak
kkkk


Frame C:
tpsekknk*iyi*kk*neinfkfinfinfilg*yckcn*wssnil**crlwrlwycy*ck
ytifsssstslldyskskfrsslw*tskinnimviqlhfqyvinaqvvqliililvllhl
ln**vvldlvelv*lgnslvvvqvvvqqvqfqqqlvvvvlvqelqqlvqvkavmtygyqi
vimlgmrtnstlliqvyhvllfklvknyvvvvhhhhlqqlgsaflfkkryc*crskvvmm
ygyqnvimhgmrinsmlqiqvlfvlifklaiqlccn**fqinn**illr*nknnif**qk
kkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06283-1 (Contig-U06283-1Q)
/CSM_Contig/Contig-U06283-1Q.Seq.d
         (915 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06283-1 (Contig-U06283-1Q) /CSM_Contig/Conti...  1685  0.0
Contig-U11672-1 (Contig-U11672-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U01809-1 (Contig-U01809-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U14309-1 (Contig-U14309-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U13362-1 (Contig-U13362-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U12064-1 (Contig-U12064-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U11757-1 (Contig-U11757-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U11567-1 (Contig-U11567-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U11515-1 (Contig-U11515-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U11433-1 (Contig-U11433-1Q) /CSM_Contig/Conti...    38  0.016

>Contig-U06283-1 (Contig-U06283-1Q) /CSM_Contig/Contig-U06283-1Q.Seq.d
          Length = 915

 Score = 1685 bits (850), Expect = 0.0
 Identities = 850/850 (100%)
 Strand = Plus / Plus

                                                                       
Query: 48  taaaatgaaattaattttaagtttattaactttatcaattttatattgggctaatactgt 107
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48  taaaatgaaattaattttaagtttattaactttatcaattttatattgggctaatactgt 107

                                                                       
Query: 108 aaatgcaattagtggtcaagtaacatattataatgatgtaggttatggcgcctgtggtac 167
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 aaatgcaattagtggtcaagtaacatattataatgatgtaggttatggcgcctgtggtac 167

                                                                       
Query: 168 tgctattgatgcaaatacacaatttttagcagcagttccaccagcttattggactacagc 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 tgctattgatgcaaatacacaatttttagcagcagttccaccagcttattggactacagc 227

                                                                       
Query: 228 aaatccaaatttagatccagtttgtggtaaacaagtaaaattaacaatataatggtaatt 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 aaatccaaatttagatccagtttgtggtaaacaagtaaaattaacaatataatggtaatt 287

                                                                       
Query: 288 caattacacttccagtacgtgataaatgcccaggttgtccaactaataatattgatatta 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 caattacacttccagtacgtgataaatgcccaggttgtccaactaataatattgatatta 347

                                                                       
Query: 348 gtgctcctgcatttactcaattagtaggtagtcttggacctggtagagttagtgtaactt 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gtgctcctgcatttactcaattagtaggtagtcttggacctggtagagttagtgtaactt 407

                                                                       
Query: 408 gggaattccttggtggtagttcaagtggtggtacaacaggtacagtttcaacaacaactg 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gggaattccttggtggtagttcaagtggtggtacaacaggtacagtttcaacaacaactg 467

                                                                       
Query: 468 gtggtagtggtacttgtccaagaactgcaacagttagtgcaggtcaaggctgttatgacg 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gtggtagtggtacttgtccaagaactgcaacagttagtgcaggtcaaggctgttatgacg 527

                                                                       
Query: 528 tatgggtatcaaattgtaataatgcttgggatgagaaccaattctacgctgctaatccag 587
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tatgggtatcaaattgtaataatgcttgggatgagaaccaattctacgctgctaatccag 587

                                                                       
Query: 588 gtgtatcatgtactgctcttcaagttggtcaaaaattatgttgtggtggtacatcatcat 647
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gtgtatcatgtactgctcttcaagttggtcaaaaattatgttgtggtggtacatcatcat 647

                                                                       
Query: 648 catcttcaacaactgggtagtgctttcttgttcaagaaaaggtactgttgatgcaggtca 707
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 catcttcaacaactgggtagtgctttcttgttcaagaaaaggtactgttgatgcaggtca 707

                                                                       
Query: 708 aaggttgttatgatgtatgggtatcaaaatgtaataatgcatggaatgagaatcaattct 767
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 aaggttgttatgatgtatgggtatcaaaatgtaataatgcatggaatgagaatcaattct 767

                                                                       
Query: 768 atgctgcaaatccaggtgttgtttgtactgatcttcaagttggccatacaattatgttgt 827
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 atgctgcaaatccaggtgttgtttgtactgatcttcaagttggccatacaattatgttgt 827

                                                                       
Query: 828 aattaataatttcaaattaataattgatgaatattattaagataaaataaaaacaatatt 887
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 aattaataatttcaaattaataattgatgaatattattaagataaaataaaaacaatatt 887

                     
Query: 888 ttttgatagc 897
           ||||||||||
Sbjct: 888 ttttgatagc 897


>Contig-U11672-1 (Contig-U11672-1Q) /CSM_Contig/Contig-U11672-1Q.Seq.d
          Length = 1310

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 459 caacaactggtggtagtggt 478
           ||||||||||||||||||||
Sbjct: 719 caacaactggtggtagtggt 738


 Score = 36.2 bits (18), Expect = 0.064
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 646 atcatcttcaacaactgg 663
           ||||||||||||||||||
Sbjct: 711 atcatcttcaacaactgg 728


>Contig-U01809-1 (Contig-U01809-1Q) /CSM_Contig/Contig-U01809-1Q.Seq.d
          Length = 1302

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 49  aaaatgaaattaattttaagtttattaa 76
           ||||||||||||||||||| || |||||
Sbjct: 157 aaaatgaaattaattttaatttgattaa 184


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,663
Number of Sequences: 6905
Number of extensions: 18663
Number of successful extensions: 3145
Number of sequences better than 10.0: 349
length of query: 915
length of database: 5,674,871
effective HSP length: 16
effective length of query: 899
effective length of database: 5,564,391
effective search space: 5002387509
effective search space used: 5002387509
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11. 8
Homology vs DNA 
Query= Contig-U06283-1 (Contig-U06283-1Q) /CSM_Contig/Contig-U06283-1Q.Seq.d
         (915 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU262583) Dictyostelium discoideum vegetative cDNA clone:VS...   815   0.0    3
(AU268652) Dictyostelium discoideum vegetative cDNA clone:VS...   708   0.0    4
(AU268375) Dictyostelium discoideum vegetative cDNA clone:VS...   773   0.0    4
(AU262185) Dictyostelium discoideum vegetative cDNA clone:VS...   773   0.0    3
(AU268296) Dictyostelium discoideum vegetative cDNA clone:VS...   704   0.0    3
(AU262864) Dictyostelium discoideum vegetative cDNA clone:VS...   664   0.0    3
(AU268146) Dictyostelium discoideum vegetative cDNA clone:VS...   557   0.0    3
(AU268147) Dictyostelium discoideum vegetative cDNA clone:VS...   553   0.0    3
(AU262508) Dictyostelium discoideum vegetative cDNA clone:VS...   551   0.0    3
(AU261585) Dictyostelium discoideum vegetative cDNA clone:VS...   535   0.0    3
(AU268653) Dictyostelium discoideum vegetative cDNA clone:VS...   478   0.0    3
(AU268374) Dictyostelium discoideum vegetative cDNA clone:VS...   430   0.0    2
(AU268295) Dictyostelium discoideum vegetative cDNA clone:VS...   412   0.0    2
(AU270062) Dictyostelium discoideum vegetative cDNA clone:VS...   406   e-172  2
(AU270528) Dictyostelium discoideum vegetative cDNA clone:VS...   210   e-123  3
(AU270529) Dictyostelium discoideum vegetative cDNA clone:VS...   210   e-123  3
(AU266919) Dictyostelium discoideum vegetative cDNA clone:VS...   216   e-116  4
(AU266918) Dictyostelium discoideum vegetative cDNA clone:VS...   210   e-114  4
(EJ465112) 1095390105788 Global-Ocean-Sampling_GS-28-01-01-1...    50   0.15   1
(EY331589) CAWY4278.rev CAWY Helobdella robusta Subtracted E...    44   0.40   2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    44   0.44   9
(EY334112) CAWY6134.fwd CAWY Helobdella robusta Subtracted E...    44   0.44   2
(EK501047) 1095505211435 Global-Ocean-Sampling_GS-32-01-01-1...    40   0.51   2
(AP009552) Microcystis aeruginosa NIES-843 DNA, complete gen...    48   0.59   1
(AC107124) Rattus norvegicus clone CH230-221O11, WORKING DRA...    44   0.78   3
(ES642378) NVPPL63TR NVPP Nasonia vitripennis cDNA, mRNA seq...    34   1.00   3
(EF452018) Antrophyum latifolium ATP synthase beta chain (at...    46   2.3    1
(AY808875) Schistosoma japonicum SJCHGC04685 protein mRNA, p...    46   2.3    1
(EK390860) 1095469501846 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.3    1
(DU409421) 1098486033000 CHORI-243 Ovis aries genomic clone ...    46   2.3    1
(DY662850) SV_MF_05_G09 SV_MF Senecio vulgaris subsp. vulgar...    46   2.3    1
(DT633727) EST1148658 Normalized pine embryo library, Lib_D ...    46   2.3    1
(DR686905) EST1076983 Normalized pine embryo library, Lib_D ...    46   2.3    1
(CV672478) RET7SJ_01B11.T7 Schistosoma japonicum reverse cDN...    46   2.3    1
(CV671118) C03_RE2-3-SJ-SC03-T7 Schistosoma japonicum revers...    46   2.3    1
(CV035253) RTNACL1_14_G02.g1_A029 Roots plus added NaCl Pinu...    46   2.3    1
(CV035188) RTNACL1_14_G02.b1_A029 Roots plus added NaCl Pinu...    46   2.3    1
(CN040038) nm_34h_h19_t3_ Math Ambystoma mexicanum cDNA, mRN...    46   2.3    1
(CB282474) BT0448 Blomia tropicalis cDNA library Blomia trop...    46   2.3    1
(BU712826) SJAABGB04 Adult SjC 7/94 Schistosoma japonicum cD...    46   2.3    1
(BU711530) SJAAANF09 Adult SjC 7/94 Schistosoma japonicum cD...    46   2.3    1
(BG440209) GA__Ea0006G06f Gossypium arboreum 7-10 dpa fiber ...    46   2.3    1
(AW828708) ra73a06.y1 Bird-Rao Meloidogyne incognita J2 Melo...    46   2.3    1
(AW588731) ra03h10.y2 Bird-Rao Meloidogyne incognita J2 Melo...    46   2.3    1
(AW571369) ra19f03.y2 Bird-Rao Meloidogyne incognita J2 Melo...    46   2.3    1
(AW571332) ra19a06.y2 Bird-Rao Meloidogyne incognita J2 Melo...    46   2.3    1
(AW571277) ra16d05.y2 Bird-Rao Meloidogyne incognita J2 Melo...    46   2.3    1
(AW571037) ra15d12.y1 Bird-Rao Meloidogyne incognita J2 Melo...    46   2.3    1
(AC126014) Medicago truncatula clone mth2-18j5, complete seq...    34   3.0    6
(EX512010) RR_EG1109B31e01.esd.y EG1 Schistosoma mansoni cDN...    32   3.1    3
(AC110842) Rattus norvegicus clone CH230-189I23, *** SEQUENC...    42   3.4    6
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    38   4.0    8
(AC007548) Drosophila melanogaster clone BACR48M17, complete...    38   4.2    3
(AC178725) Strongylocentrotus purpuratus clone R3-3002N5, WO...    38   4.9    4
(BQ854231) QGB22L04.yg.ab1 QG_ABCDI lettuce salinas Lactuca ...    32   6.0    2
(ET854377) CHO_OF448xa13r1.ab1 CHO_OF Nicotiana tabacum geno...    42   6.3    2
(ET854304) CHO_OF448xa15f2.ab1 CHO_OF Nicotiana tabacum geno...    42   6.5    2
(AC177653) Strongylocentrotus purpuratus clone R3-1020C16, W...    34   6.5    6
(FH665454) CHO_OF5012xj15r1.ab1 CHO_OF5 Nicotiana tabacum ge...    42   7.0    2
(AZ669841) ENTKM57TR Entamoeba histolytica Sheared DNA Entam...    34   7.1    2
(FH743050) CHO_OF5013xh05r1.ab1 CHO_OF5 Nicotiana tabacum ge...    42   7.2    2
(CT025731) Mouse DNA sequence from clone RP24-85N6 on chromo...    44   9.2    1
(AC153895) Mus musculus 6 BAC RP23-114F22 (Roswell Park Canc...    44   9.2    1
(AC101679) Mus musculus chromosome 17, clone RP23-173O19, co...    44   9.2    1
(AC143844) Macaca mulatta  BAC CH250-270K11 (Children's Hosp...    44   9.2    1
(X74411) Candida parapsilosis complete mitochondrial genome.       44   9.2    1
(DQ376035) Candida parapsilosis strain CLIB214 mitochondrion...    44   9.2    1
(BT025724) Arabidopsis thaliana At3g53310 mRNA, complete cds.      44   9.2    1
(AY087586) Arabidopsis thaliana clone 36830 mRNA, complete s...    44   9.2    1
(AM483975) Vitis vinifera contig VV78X044916.33, whole genom...    44   9.2    1
(AM464766) Vitis vinifera contig VV78X044916.31, whole genom...    44   9.2    1
(AL132966) Arabidopsis thaliana DNA chromosome 3, BAC clone ...    44   9.2    1
(AL132958) Arabidopsis thaliana DNA chromosome 3, BAC clone ...    44   9.2    1
(AC210382) Populus trichocarpa clone POP018-P22, complete se...    44   9.2    1
(U23479) Dictyostelium discoideum phosphatidylinositol 4-kin...    44   9.2    1
(AC206120) Saccoglossus kowalevskii  BAC CUGI_SK_BA 001B11 (...    44   9.2    1
(AF315553) Homo sapiens PRKY gene, partial sequence, in clon...    44   9.2    1
(AC153826) Mus musculus clone RP23-119H23, WORKING DRAFT SEQ...    44   9.2    1
(AC123371) Rattus norvegicus clone CH230-40D4, *** SEQUENCIN...    44   9.2    1
(AC123137) Rattus norvegicus clone CH230-239B13, *** SEQUENC...    44   9.2    1
(AC112415) Rattus norvegicus clone CH230-345K21, *** SEQUENC...    44   9.2    1
(AC177103) Strongylocentrotus purpuratus clone R3-4012P13, W...    44   9.2    1
(AC170671) Bos taurus clone CH240-221N9, WORKING DRAFT SEQUE...    44   9.2    1
(AC167791) Bos taurus clone CH240-212G21, WORKING DRAFT SEQU...    44   9.2    1
(AC025668) Mus musculus clone RP23-100K11, WORKING DRAFT SEQ...    44   9.2    1
(BX823050) Arabidopsis thaliana Full-length cDNA Complete se...    44   9.2    1
(BX822775) Arabidopsis thaliana Full-length cDNA Complete se...    44   9.2    1
(AQ961695) LERGA80TR LERG Arabidopsis thaliana genomic clone...    44   9.2    1
(AQ961694) LERGA80TF LERG Arabidopsis thaliana genomic clone...    44   9.2    1
(FI124656) MUGQ_CH252P501G20T7_CH0215_074 CHORI-252 Vervet M...    44   9.2    1
(FH553717) CHO_OF4220xc04f1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   9.2    1
(AM627272) Entamoeba dispar GSS, clone dispar20b07.q1k.            44   9.2    1
(CW846408) GT13226.Ds5.11.13.2003.jx40.571 Arabidopsis thali...    44   9.2    1
(CT549690) A BAC library has been constructed from cultivar ...    44   9.2    1
(EL361821) CCEM6415.b1_M20.ab1 CCE(LMS) endive Cichorium end...    44   9.2    1
(EL360639) CCEM5333.b1_J14.ab1 CCE(LMS) endive Cichorium end...    44   9.2    1
(EH785291) CNSS24540.b1_H16.ab1 CNS(LMS) yellow starthistle ...    44   9.2    1
(EH782203) CNSS21041.b1_B06.ab1 CNS(LMS) yellow starthistle ...    44   9.2    1
(EH759995) CNSL6135.b1_N22.ab1 CNS(LMS) yellow starthistle C...    44   9.2    1
(EH696886) CCIM8702.b1_K16.ab1 CCI(LMS) chicory Cichorium in...    44   9.2    1

>(AU262583) Dictyostelium discoideum vegetative cDNA clone:VSC464,
           3' end single read.
          Length = 643

 Score =  815 bits (411), Expect(3) = 0.0
 Identities = 411/411 (100%)
 Strand = Plus / Plus


Query: 253 ggtaaacaagtaaaattaacaatataatggtaattcaattacacttccagtacgtgataa 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ggtaaacaagtaaaattaacaatataatggtaattcaattacacttccagtacgtgataa 60


Query: 313 atgcccaggttgtccaactaataatattgatattagtgctcctgcatttactcaattagt 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atgcccaggttgtccaactaataatattgatattagtgctcctgcatttactcaattagt 120


Query: 373 aggtagtcttggacctggtagagttagtgtaacttgggaattccttggtggtagttcaag 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aggtagtcttggacctggtagagttagtgtaacttgggaattccttggtggtagttcaag 180


Query: 433 tggtggtacaacaggtacagtttcaacaacaactggtggtagtggtacttgtccaagaac 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tggtggtacaacaggtacagtttcaacaacaactggtggtagtggtacttgtccaagaac 240


Query: 493 tgcaacagttagtgcaggtcaaggctgttatgacgtatgggtatcaaattgtaataatgc 552
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgcaacagttagtgcaggtcaaggctgttatgacgtatgggtatcaaattgtaataatgc 300


Query: 553 ttgggatgagaaccaattctacgctgctaatccaggtgtatcatgtactgctcttcaagt 612
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttgggatgagaaccaattctacgctgctaatccaggtgtatcatgtactgctcttcaagt 360


Query: 613 tggtcaaaaattatgttgtggtggtacatcatcatcatcttcaacaactgg 663
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tggtcaaaaattatgttgtggtggtacatcatcatcatcttcaacaactgg 411

 Score =  210 bits (106), Expect(3) = 0.0
 Identities = 106/106 (100%)
 Strand = Plus / Plus


Query: 708 aaggttgttatgatgtatgggtatcaaaatgtaataatgcatggaatgagaatcaattct 767
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aaggttgttatgatgtatgggtatcaaaatgtaataatgcatggaatgagaatcaattct 512


Query: 768 atgctgcaaatccaggtgttgtttgtactgatcttcaagttggcca 813
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 atgctgcaaatccaggtgttgtttgtactgatcttcaagttggcca 558

 Score = 73.8 bits (37), Expect(3) = 0.0
 Identities = 37/37 (100%)
 Strand = Plus / Plus


Query: 672 ttcttgttcaagaaaaggtactgttgatgcaggtcaa 708
           |||||||||||||||||||||||||||||||||||||
Sbjct: 418 ttcttgttcaagaaaaggtactgttgatgcaggtcaa 454

 Score =  109 bits (55), Expect(2) = 6e-28
 Identities = 79/87 (90%)
 Strand = Plus / Plus


Query: 505 tgcaggtcaaggctgttatgacgtatgggtatcaaattgtaataatgcttgggatgagaa 564
           |||||||||||| |||||||| |||||||||||||| ||||||||||| ||| |||||||
Sbjct: 445 tgcaggtcaaggttgttatgatgtatgggtatcaaaatgtaataatgcatggaatgagaa 504


Query: 565 ccaattctacgctgctaatccaggtgt 591
            |||||||| ||||| |||||||||||
Sbjct: 505 tcaattctatgctgcaaatccaggtgt 531

 Score = 48.1 bits (24), Expect(2) = 6e-28
 Identities = 33/36 (91%)
 Strand = Plus / Plus


Query: 596 tgtactgctcttcaagttggtcaaaaattatgttgt 631
           ||||||| |||||||||||| ||| |||||||||||
Sbjct: 536 tgtactgatcttcaagttggccaacaattatgttgt 571

 Score = 93.7 bits (47), Expect(2) = 1e-18
 Identities = 71/79 (89%)
 Strand = Plus / Plus


Query: 708 aaggttgttatgatgtatgggtatcaaaatgtaataatgcatggaatgagaatcaattct 767
           |||| |||||||| |||||||||||||| ||||||||||| ||| ||||||| |||||||
Sbjct: 261 aaggctgttatgacgtatgggtatcaaattgtaataatgcttgggatgagaaccaattct 320


Query: 768 atgctgcaaatccaggtgt 786
           | ||||| |||||||||||
Sbjct: 321 acgctgctaatccaggtgt 339

 Score = 32.2 bits (16), Expect(2) = 1e-18
 Identities = 19/20 (95%)
 Strand = Plus / Plus


Query: 791 tgtactgatcttcaagttgg 810
           ||||||| ||||||||||||
Sbjct: 344 tgtactgctcttcaagttgg 363

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 824,092,585
Number of extensions: 49312363
Number of successful extensions: 4913717
Number of sequences better than 10.0: 131
Length of query: 915
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 891
Effective length of database: 97,308,875,965
Effective search space: 86702208484815
Effective search space used: 86702208484815
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.21
Homology vs Protein 
Query= Contig-U06283-1 (Contig-U06283-1Q) /CSM_Contig/Contig-U06283-1Q.Seq.d
         (915 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX294012_41(BX294012|pid:none) Neurospora crassa DNA linkage gro...    53   4e-09
CU633873_3(CU633873|pid:none) Podospora anserina genomic DNA chr...    57   7e-07
FM992691_93(FM992691|pid:none) Candida dubliniensis CD36 chromos...    45   7e-07
BT034105_1(BT034105|pid:none) Zea mays full-length cDNA clone ZM...    46   2e-06
AE017353_206(AE017353|pid:none) Cryptococcus neoformans var. neo...    37   1e-05
AP007175_419(AP007175|pid:none) Aspergillus oryzae RIB40 genomic...    37   2e-05
CP000875_1136(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ...    40   6e-05
CU640366_32(CU640366|pid:none) Podospora anserina genomic DNA ch...    40   2e-04
FJ705444_1(FJ705444|pid:none) Globodera rostochiensis expansin B...    48   4e-04
AJ311902_1(AJ311902|pid:none) Globodera rostochiensis mRNA for E...    48   4e-04
T29861(T29861)hypothetical protein F10G2.5 - Caenorhabditis eleg...    47   0.001
CR382137_794(CR382137|pid:none) Debaryomyces hansenii strain CBS...    45   0.003
AP007164_624(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    45   0.003
CP001013_4355(CP001013|pid:none) Leptothrix cholodnii SP-6, comp...    39   0.005
AE017342_215(AE017342|pid:none) Cryptococcus neoformans var. neo...    34   0.006
AJ271701_1(AJ271701|pid:none) Agaricus bisporus partial mRNA for...    35   0.008
CP000113_3477(CP000113|pid:none) Myxococcus xanthus DK 1622, com...    37   0.029
FJ621508_1(FJ621508|pid:none) Venturia inaequalis candidate effe...    32   0.080
AM920437_1589(AM920437|pid:none) Penicillium chrysogenum Wiscons...    39   0.19
AM270053_86(AM270053|pid:none) Aspergillus niger contig An03c012...    39   0.24
FN392319_284(FN392319|pid:none) Pichia pastoris GS115 chromosome...    38   0.54
CP000804_2251(CP000804|pid:none) Roseiflexus castenholzii DSM 13...    37   0.70
AX112129_1(AX112129|pid:none) Sequence 3 from Patent WO0127298.        36   2.0
CP000512_3336(CP000512|pid:none) Acidovorax citrulli AAC00-1, co...    35   2.7
AP003935_8(AP003935|pid:none) Oryza sativa Japonica Group genomi...    35   4.6

>BX294012_41(BX294012|pid:none) Neurospora crassa DNA linkage group
           V Cosmid contig 80A10.
          Length = 265

 Score = 52.8 bits (125), Expect(2) = 4e-09
 Identities = 23/46 (50%), Positives = 29/46 (63%)
 Frame = +2

Query: 278 NGNSITLPVRDKCPGCPTNNIDISAPAFTQLVGSLGPGRVSVTWEF 415
           NG ++T  VRDKC GC  N+ID+S  AF  + G+L  GR  V W F
Sbjct: 218 NGKTVTATVRDKCMGCAFNDIDVSKKAFLDVFGALTDGRKKVEWAF 263

 Score = 32.0 bits (71), Expect(2) = 4e-09
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = +1

Query: 97  ANTVNAISGQVTYYNDVGYGACG---TAIDANTQFLAAVPPAYWTTANPNLDPVCGKQV 264
           ++T ++ +G +TYY DVG GACG     +D +   +A       T +N N  P C ++V
Sbjct: 158 SSTSSSHNGDLTYY-DVGLGACGFDDNGLDMSDNIVALSHEMMGTQSNGN--PYCNRKV 213

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,190,301,786
Number of extensions: 19622267
Number of successful extensions: 46478
Number of sequences better than 10.0: 25
Number of HSP's gapped: 46443
Number of HSP's successfully gapped: 39
Length of query: 305
Length of database: 1,040,966,779
Length adjustment: 128
Effective length of query: 177
Effective length of database: 630,818,299
Effective search space: 111654838923
Effective search space used: 111654838923
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.82  gvh: 0.47  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U06283-1 is cyt
VS (DIR, S) 12
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0