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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U06263-1
Contig ID Contig-U06263-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U06263-1 (Contig-U06263-1Q) /CSM_Contig/Contig-U06263-1Q.Seq.d
ATTTTGATTCAAACCTTTCAACATCATCACCATCATCAAATGCTTCTTCA
AATTCAAATTCAACTTCTTCATCTTCAGCTTCATTATCACCACAAATAGC
TTTAGGTTGTGAGAATGGTTTCATATATTTATTAGTTGATTTTAAAATAT
ATCCTTATTGTCAAATTGGTTATCCGATTACAAAATTAAATAAAATGAAA
TACTCTGATATAAATAATAATGATAATGATAATAATTATAATGGTAATAA
TAATTCAAATGGTGATGATGATGATGATGATGTTGACGATGATTTAGATA
TTTTGATATGTACTGGTTATTTTAATTCAATAAAAATGTTTTATAATAAA
GAGGTAATATGTGACCATTCATTGGATGATTGGTGTCACACCCTGTCTAT
TGGTCAAGTTGAAAATAATGGTGATAAGACGATTGTAATTGGAAAATTAG
ATAATACTATAGAATATTTAAAACCTACGAAACTAATTAAAAAAGAAACA
TTACATCCACCATTATAATAATTGTTAATAAACACCAATTTTGTATAGAA
AATAAAAAA
Gap no gap
Contig length 559
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 6788745
End point 6788186
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U06263
List of clone(s) 

est1=VSA485Z,1,560
Translated Amino Acid sequence 
FDSNLSTSSPSSNASSNSNSTSSSSASLSPQIALGCENGFIYLLVDFKIYPYCQIGYPIT
KLNKMKYSDINNNDNDNNYNGNNNSNGDDDDDDVDDDLDILICTGYFNSIKMFYNKEVIC
DHSLDDWCHTLSIGQVENNGDKTIVIGKLDNTIEYLKPTKLIKKETLHPPL**llintnf
v*kik
Translated Amino Acid sequence (All Frames) 
Frame A:
iliqtfqhhhhhqmllqiqiqllhlqlhyhhk*l*vvrmvsyiy*lilkyilivklvirl
qn*ik*ntli*iimimiiiimviiiqmvmmmmmmltmi*if*yvlviliq*kcfiikr*y
vtihwmigvtpcllvklkimvirrl*len*iil*ni*nlrn*lkkkhyihhynnc**tpi
lyrk*k


Frame B:
f*fkpfniitiikcffkfkfnffifsfiittnsfrl*ewfhifis*f*nisllsnwlsdy
kik*neil*yk*******l*w***fkw******c*r*fryfdmywlf*fnknvl**rgnm
*pfig*lvshpvywss*k*w**ddcnwkir*yyrifktyetn*krnitstiiiivnkhqf
cienkk


Frame C:
FDSNLSTSSPSSNASSNSNSTSSSSASLSPQIALGCENGFIYLLVDFKIYPYCQIGYPIT
KLNKMKYSDINNNDNDNNYNGNNNSNGDDDDDDVDDDLDILICTGYFNSIKMFYNKEVIC
DHSLDDWCHTLSIGQVENNGDKTIVIGKLDNTIEYLKPTKLIKKETLHPPL**llintnf
v*kik
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06263-1 (Contig-U06263-1Q)
/CSM_Contig/Contig-U06263-1Q.Seq.d
         (559 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06263-1 (Contig-U06263-1Q) /CSM_Contig/Conti...   527  e-150
Contig-U11142-1 (Contig-U11142-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U08734-1 (Contig-U08734-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U13660-1 (Contig-U13660-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U12716-1 (Contig-U12716-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U12467-1 (Contig-U12467-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U11744-1 (Contig-U11744-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U10975-1 (Contig-U10975-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U04099-1 (Contig-U04099-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U01321-1 (Contig-U01321-1Q) /CSM_Contig/Conti...    38  0.010

>Contig-U06263-1 (Contig-U06263-1Q) /CSM_Contig/Contig-U06263-1Q.Seq.d
          Length = 559

 Score =  527 bits (266), Expect = e-150
 Identities = 266/266 (100%)
 Strand = Plus / Plus

                                                                       
Query: 294 ttagatattttgatatgtactggttattttaattcaataaaaatgttttataataaagag 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ttagatattttgatatgtactggttattttaattcaataaaaatgttttataataaagag 353

                                                                       
Query: 354 gtaatatgtgaccattcattggatgattggtgtcacaccctgtctattggtcaagttgaa 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gtaatatgtgaccattcattggatgattggtgtcacaccctgtctattggtcaagttgaa 413

                                                                       
Query: 414 aataatggtgataagacgattgtaattggaaaattagataatactatagaatatttaaaa 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 aataatggtgataagacgattgtaattggaaaattagataatactatagaatatttaaaa 473

                                                                       
Query: 474 cctacgaaactaattaaaaaagaaacattacatccaccattataataattgttaataaac 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 cctacgaaactaattaaaaaagaaacattacatccaccattataataattgttaataaac 533

                                     
Query: 534 accaattttgtatagaaaataaaaaa 559
           ||||||||||||||||||||||||||
Sbjct: 534 accaattttgtatagaaaataaaaaa 559


 Score =  410 bits (207), Expect = e-115
 Identities = 207/207 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttgattcaaacctttcaacatcatcaccatcatcaaatgcttcttcaaattcaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   attttgattcaaacctttcaacatcatcaccatcatcaaatgcttcttcaaattcaaatt 60

                                                                       
Query: 61  caacttcttcatcttcagcttcattatcaccacaaatagctttaggttgtgagaatggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  caacttcttcatcttcagcttcattatcaccacaaatagctttaggttgtgagaatggtt 120

                                                                       
Query: 121 tcatatatttattagttgattttaaaatatatccttattgtcaaattggttatccgatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcatatatttattagttgattttaaaatatatccttattgtcaaattggttatccgatta 180

                                      
Query: 181 caaaattaaataaaatgaaatactctg 207
           |||||||||||||||||||||||||||
Sbjct: 181 caaaattaaataaaatgaaatactctg 207


 Score = 34.2 bits (17), Expect = 0.15
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                
Query: 18  tcaacatcatcaccatcatca 38
           |||||||||||| ||||||||
Sbjct: 286 tcaacatcatcatcatcatca 266


>Contig-U11142-1 (Contig-U11142-1Q) /CSM_Contig/Contig-U11142-1Q.Seq.d
          Length = 3431

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 22  catcatcaccatcatcaaat 41
           ||||||||||||||||||||
Sbjct: 930 catcatcaccatcatcaaat 949


 Score = 32.2 bits (16), Expect = 0.61
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                
Query: 65   ttcttcatcttcagcttcat 84
            ||||||||||||| ||||||
Sbjct: 1889 ttcttcatcttcatcttcat 1870


 Score = 28.2 bits (14), Expect = 9.5
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                              
Query: 59   ttcaacttcttcatcttc 76
            |||| |||||||||||||
Sbjct: 1553 ttcatcttcttcatcttc 1536


>Contig-U08734-1 (Contig-U08734-1Q) /CSM_Contig/Contig-U08734-1Q.Seq.d
          Length = 1423

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 177 attacaaaattaaataaaat 196
           ||||||||||||||||||||
Sbjct: 37  attacaaaattaaataaaat 56


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,684
Number of Sequences: 6905
Number of extensions: 16684
Number of successful extensions: 1990
Number of sequences better than 10.0: 773
length of query: 559
length of database: 5,674,871
effective HSP length: 16
effective length of query: 543
effective length of database: 5,564,391
effective search space: 3021464313
effective search space used: 3021464313
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11. 7
Homology vs DNA 
Query= Contig-U06263-1 (Contig-U06263-1Q) /CSM_Contig/Contig-U06263-1Q.Seq.d
         (559 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU261513) Dictyostelium discoideum vegetative cDNA clone:VS...   527   0.0    2
(AC115606) Dictyostelium discoideum chromosome 2 map 159760-...   402   0.0    3
(DW048879) CLLX1627.b1_E23.ab1 CLL(XYZ) lettuce saligna Lact...    54   0.005  1
(AC106806) Homo sapiens chromosome 5 clone RP11-510I6, compl...    50   0.086  1
(AC010482) Homo sapiens chromosome 5 clone CTD-2318J2, compl...    50   0.086  1
(AC112190) Homo sapiens chromosome 5 clone RP11-326C11, WORK...    50   0.086  1
(EK056077) 1092960024569 Global-Ocean-Sampling_GS-31-01-01-1...    50   0.086  1
(CU928590) S.lycopersicum DNA sequence *** SEQUENCING IN PRO...    40   0.13   3
(DX573337) Phaseolus-Bat-7_02_J01.T3 Phaseolus-Bat-7 Phaseol...    38   0.23   2
(AC202199) Rhesus Macaque  BAC CH250-272E20 () complete sequ...    48   0.34   1
(AC197866) Rhesus Macaque  BAC CH250-421M01 () complete sequ...    48   0.34   1
(AM460186) Vitis vinifera contig VV78X014886.2, whole genome...    48   0.34   1
(AC202690) Macaca mulatta clone CH250-421M1, WORKING DRAFT S...    48   0.34   1
(FH099421) CHO_OF3039xe18r1.ab1 CHO_OF3 Nicotiana tabacum ge...    48   0.34   1
(ET188369) 15aRG11 American mink BAC library Neovison vison ...    48   0.34   1
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)...    42   0.34   9
(DU893207) 404569 Tomato HindIII BAC Library Solanum lycoper...    42   0.68   2
(AF546760) Acidodontium ramicola ribosomal protein L16 (rpl1...    40   0.74   2
(AC209898) Zea mays chromosome 5 clone CH201-340A10; ZMMBBc0...    40   1.3    3
(AC206191) Zea mays chromosome 6 clone CH201-249A12; ZMMBBc0...    40   1.3    3
(AX346095) Sequence 1166 from Patent WO0200928.                    46   1.3    1
(EJ513043) 1095427120295 Global-Ocean-Sampling_GS-28-01-01-1...    46   1.3    1
(ED765184) GM_WBb0137L20.r GM_WBb Glycine max genomic clone ...    46   1.3    1
(CG816516) SOYAK70TH LargeInsertSoybeanGenLib Glycine max ge...    46   1.3    1
(DN264190) Meso00671 Mesostigma vegetative library Mesostigm...    46   1.3    1
(DN250604) ACAB-aab79o14.g1 Hydra UCI6- barcoded EST's Hydra...    46   1.3    1
(AQ865949) nbeb0026D16f CUGI Rice BAC Library (EcoRI) Oryza ...    40   1.5    2
(AM430254) Vitis vinifera contig VV78X106753.9, whole genome...    44   2.2    2
(AC171135) Helobdella robusta clone CH306-1A6, complete sequ...    38   2.4    4
(AC108421) Mus musculus chromosome 19, clone RP23-433N7, com...    32   2.6    2
(AC123941) Mus musculus BAC clone RP23-458G24 from chromosom...    32   2.6    2
(AC128897) Rattus norvegicus clone CH230-288O6, *** SEQUENCI...    42   2.7    4
(AC186121) Felis catus clone RP86-147N20, WORKING DRAFT SEQU...    34   2.8    4
(AC224977) Bos taurus clone CH240-470J12, WORKING DRAFT SEQU...    44   3.7    4
(AF411931) Plasmodium falciparum strain Dd2 normocyte-bindin...    32   3.7    4
(AF411932) Plasmodium falciparum strain Malayan Camp K- norm...    32   3.8    4
(AF533700) Plasmodium falciparum 3D7 normocyte-binding prote...    32   3.8    4
(AF411930) Plasmodium falciparum strain HB3 normocyte-bindin...    32   3.8    4
(AF411933) Plasmodium falciparum strain 7G8 normocyte-bindin...    32   3.8    4
(AF411929) Plasmodium falciparum strain FVO normocyte-bindin...    32   3.8    4
(AL034557) Plasmodium falciparum MAL4P1.                           32   4.5    8
(AC163138) Bos taurus clone CH240-79P21, WORKING DRAFT SEQUE...    44   5.1    3
(CR361550) Zebrafish DNA sequence from clone DKEYP-89A11 in ...    44   5.3    1
(BC138070) Mus musculus schlafen 3, mRNA (cDNA clone MGC:169...    44   5.3    1
(BC132627) Mus musculus schlafen 3, mRNA (cDNA clone MGC:164...    44   5.3    1
(AL844500) Mus musculus chromosome 11 region in the Om locus...    44   5.3    1
(AL713883) Mus musculus chromosome 11 region in the Om locus...    44   5.3    1
(AL603711) Mouse DNA sequence from clone RP23-381B19 on chro...    44   5.3    1
(AF099974) Mus musculus schlafen3 (Slfn3) mRNA, complete cds.      44   5.3    1
(AM486392) Vitis vinifera, whole genome shotgun sequence, co...    44   5.3    1
(AM455583) Vitis vinifera contig VV78X203716.4, whole genome...    44   5.3    1
(DL026760) Diagnosis of existing illnesses or that praedispo...    44   5.3    1
(DL026759) Diagnosis of existing illnesses or that praedispo...    44   5.3    1
(AC107886) Homo sapiens chromosome 11, clone CTD-3064C13, co...    44   5.3    1
(AC026798) Homo sapiens chromosome 5 clone CTD-2312P21, comp...    44   5.3    1
(AC005280) Homo sapiens PAC clone RP1-240K6 from 14, complet...    44   5.3    1
(AC162553) Bos taurus clone CH240-121N2, WORKING DRAFT SEQUE...    44   5.3    1
(AC135294) Rattus norvegicus clone CH230-132O13, *** SEQUENC...    44   5.3    1
(AC132562) Rattus norvegicus clone CH230-5B7, WORKING DRAFT ...    44   5.3    1
(AC108236) Rattus norvegicus clone CH230-106M15, *** SEQUENC...    44   5.3    1
(AC094815) Rattus norvegicus clone CH230-5J3, WORKING DRAFT ...    44   5.3    1
(AC094611) Rattus norvegicus clone CH230-5A8, WORKING DRAFT ...    44   5.3    1
(CU927991) S.lycopersicum DNA sequence *** SEQUENCING IN PRO...    44   5.3    1
(CU856019) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.3    1
(AC091831) Homo sapiens chromosome 5 clone CTD-2026O22, WORK...    44   5.3    1
(CR940353) Theileria annulata genomic DNA chromosome 4.            44   5.3    1
(AC231313) Choloepus hoffmanni clone CH281-422F22, WORKING D...    44   5.3    1
(AC224851) Bos taurus clone CH240-474I5, WORKING DRAFT SEQUE...    44   5.3    1
(AC199535) Zea mays chromosome unknown clone CH201-490J7; ZM...    44   5.3    1
(AC025585) Mus musculus clone RP23-270F22, WORKING DRAFT SEQ...    44   5.3    1
(AK133208) Mus musculus adult male testis cDNA, RIKEN full-l...    44   5.3    1
(BH503326) BOHJB44TR BOHJ Brassica oleracea genomic clone BO...    44   5.3    1
(AQ936279) RPCI-11-Seg1-4-76J16-T7 RPCI-11 Human segment 1-4...    44   5.3    1
(AQ887461) HS_5556_A1_B03_SP6E RPCI-11 Human Male BAC Librar...    44   5.3    1
(EK437742) 1095521100265 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.3    1
(EK305749) 1095462380737 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.3    1
(EK077877) 1092961071357 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.3    1
(EK031644) 1092955413861 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.3    1
(CZ532691) SRAA-aac80c03.b1 Strongyloides ratti whole genome...    44   5.3    1
(CW504051) OP__Ba0015E05.f OP__Ba Oryza punctata genomic clo...    44   5.3    1
(CT492240) A BAC library has been constructed from cultivar ...    44   5.3    1
(CT486795) A BAC library has been constructed from cultivar ...    44   5.3    1
(AG698637) Macaca fuscata fuscata DNA, clone: MSB2-136B04_R,...    44   5.3    1
(CC539501) CH240_419B12.T7 CHORI-240 Bos taurus genomic clon...    44   5.3    1
(B32182) HS-1014-B2-E08-MR.abi CIT Human Genomic Sperm Libra...    44   5.3    1
(BZ036826) oeh35f02.g1 B.oleracea002 Brassica oleracea genom...    44   5.3    1
(EB568746) AGENCOURT_51779072 D. virilis EST Drosophila viri...    44   5.3    1
(EB568727) AGENCOURT_51779001 D. virilis EST Drosophila viri...    44   5.3    1
(EB565494) AGENCOURT_51362628 D. virilis EST Drosophila viri...    44   5.3    1
(EB564609) AGENCOURT_51185501 D. virilis EST Drosophila viri...    44   5.3    1
(DV092705) 327-384-47_C13_M13-FP Nematostella vectensis norm...    44   5.3    1
(DV091882) 327-384-44_N02_M13-FP Nematostella vectensis norm...    44   5.3    1
(DV089164) 327-384-29_B15_T7 Nematostella vectensis normaliz...    44   5.3    1
(DV088986) 327-384-28_I05_T7 Nematostella vectensis normaliz...    44   5.3    1
(DV087023) 327-384-21_B09_T7 Nematostella vectensis normaliz...    44   5.3    1
(AV274146) Mus musculus adult male testis cDNA, RIKEN full-l...    44   5.3    1
(AV071216) Mus musculus adult male small intestine cDNA, par...    44   5.3    1
(AM873676) Venerupis (Ruditapes) philippinarum EST, 5' end s...    44   5.3    1
(CV849222) ID0AEE7DA03RM1 ID0AEE Acyrthosiphon pisum cDNA cl...    44   5.3    1
(CV847460) ID0AEE2DF04RM1 ID0AEE Acyrthosiphon pisum cDNA cl...    44   5.3    1

>(AU261513) Dictyostelium discoideum vegetative cDNA clone:VSA485,
           3' end single read.
          Length = 560

 Score =  527 bits (266), Expect(2) = 0.0
 Identities = 266/266 (100%)
 Strand = Plus / Plus


Query: 294 ttagatattttgatatgtactggttattttaattcaataaaaatgttttataataaagag 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ttagatattttgatatgtactggttattttaattcaataaaaatgttttataataaagag 353


Query: 354 gtaatatgtgaccattcattggatgattggtgtcacaccctgtctattggtcaagttgaa 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gtaatatgtgaccattcattggatgattggtgtcacaccctgtctattggtcaagttgaa 413


Query: 414 aataatggtgataagacgattgtaattggaaaattagataatactatagaatatttaaaa 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 aataatggtgataagacgattgtaattggaaaattagataatactatagaatatttaaaa 473


Query: 474 cctacgaaactaattaaaaaagaaacattacatccaccattataataattgttaataaac 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 cctacgaaactaattaaaaaagaaacattacatccaccattataataattgttaataaac 533


Query: 534 accaattttgtatagaaaataaaaaa 559
           ||||||||||||||||||||||||||
Sbjct: 534 accaattttgtatagaaaataaaaaa 559

 Score =  182 bits (92), Expect(2) = 0.0
 Identities = 92/92 (100%)
 Strand = Plus / Plus


Query: 90  ccacaaatagctttaggttgtgagaatggtttcatatatttattagttgattttaaaata 149
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90  ccacaaatagctttaggttgtgagaatggtttcatatatttattagttgattttaaaata 149


Query: 150 tatccttattgtcaaattggttatccgattac 181
           ||||||||||||||||||||||||||||||||
Sbjct: 150 tatccttattgtcaaattggttatccgattac 181

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 552,022,567
Number of extensions: 40586993
Number of successful extensions: 3264185
Number of sequences better than 10.0: 169
Length of query: 559
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 536
Effective length of database: 93,106,754,628
Effective search space: 49905220480608
Effective search space used: 49905220480608
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.21
Homology vs Protein 
Query= Contig-U06263-1 (Contig-U06263-1Q) /CSM_Contig/Contig-U06263-1Q.Seq.d
         (559 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115606_5(AC115606|pid:none) Dictyostelium discoideum chromosom...   214   9e-55
(Q58558) RecName: Full=CTU1/ATPBD3 family protein MJ1157;  &E644...    33   3.8

>AC115606_5(AC115606|pid:none) Dictyostelium discoideum chromosome 2
           map 159760-209066 strain AX4, complete sequence.
          Length = 399

 Score =  214 bits (546), Expect = 9e-55
 Identities = 106/141 (75%), Positives = 106/141 (75%)
 Frame = +3

Query: 93  QIALGCENGFIYLLVDFKIYPYCQIGYPITKLNKMKXXXXXXXXXXXXXXXXXXXXXXXX 272
           QIALGCENGFIYLLVDFKIYPYCQIGYPITKLNKMK
Sbjct: 259 QIALGCENGFIYLLVDFKIYPYCQIGYPITKLNKMKYSDINNNDNDNNYNGNNNSNGDDD 318

Query: 273 XXXXXXXXXXXICTGYFNSIKMFYNKEVICDHSLDDWCHTLSIGQVENNGDKTIVIGKLD 452
                      ICTGYFNSIKMFYNKEVICDHSLDDWCHTLSIGQVENNGDKTIVIGKLD
Sbjct: 319 DDDVDDDLDILICTGYFNSIKMFYNKEVICDHSLDDWCHTLSIGQVENNGDKTIVIGKLD 378

Query: 453 NTIEYLKPTKLIKKETLHPPL 515
           NTIEYLKPTKLIKKETLHPPL
Sbjct: 379 NTIEYLKPTKLIKKETLHPPL 399

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 574,654,650
Number of extensions: 8586904
Number of successful extensions: 18028
Number of sequences better than 10.0: 2
Number of HSP's gapped: 18019
Number of HSP's successfully gapped: 2
Length of query: 186
Length of database: 1,040,966,779
Length adjustment: 121
Effective length of query: 65
Effective length of database: 653,248,294
Effective search space: 42461139110
Effective search space used: 42461139110
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.75  gvh: 0.52  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: mitochondrial
	 16.0 %: cytoplasmic
	 12.0 %: cytoskeletal

>> prediction for Contig-U06263-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0