| Contig-U01283-1 |
| Contig ID |
Contig-U01283-1 |
| Contig update |
2001. 8.29 |
| Contig sequence |
 |
| Gap |
gap included |
| Contig length |
1009 |
| Chromosome number (1..6, M) |
4 |
| Chromosome length |
5430582 |
| Start point |
604368 |
| End point |
603387 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
2 |
| Number of EST |
3 |
| Link to clone list |
U01283 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6. 7 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 4.26 |
| Homology vs DNA |
|
| protein update |
2009. 7.14 |
| Homology vs Protein |
Query= Contig-U01283-1 (Contig-U01283-1Q) /CSM_Contig/Contig-U01283-1Q.Seq.d
(1019 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC016662_15(AC016662|pid:none) Arabidopsis thaliana chromosome 1... 135 3e-30
CP000594_315(CP000594|pid:none) Ostreococcus lucimarinus CCE9901... 134 4e-30
AF480496_13(AF480496|pid:none) Oryza sativa clone BAC 49D11, com... 130 7e-29
AK102236_1(AK102236|pid:none) Oryza sativa Japonica Group cDNA c... 130 7e-29
AC079829_16(AC079829|pid:none) Arabidopsis thaliana chromosome 1... 127 6e-28
EU730895_6(EU730895|pid:none) Brachypodium distachyon clone BAC ... 127 6e-28
(Q9GNF0) RecName: Full=Uridine-cytidine kinase D; EC=2.... 98 4e-19
AL731614_16(AL731614|pid:none) Oryza sativa genomic DNA, chromos... 93 1e-17
A84425(A84425) hypothetical protein At2g01460 [imported] - Arabi... 89 2e-16
AM463144_1(AM463144|pid:none) Vitis vinifera contig VV78X078650.... 89 2e-16
AE000666_1593(AE000666|pid:none) Methanothermobacter thermautotr... 47 8e-04
CU928176_384(CU928176|pid:none) Zygosaccharomyces rouxii strain ... 46 0.002
CP000660_73(CP000660|pid:none) Pyrobaculum arsenaticum DSM 13514... 45 0.005
CP000505_38(CP000505|pid:none) Thermofilum pendens Hrk 5, comple... 44 0.009
(B2S1K4) RecName: Full=Uridine kinase; EC=2.7.1.48; Alt... 44 0.012
CP000496_721(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 43 0.015
AE009441_571(AE009441|pid:none) Pyrobaculum aerophilum str. IM2,... 43 0.015
A90167(A90167) adenylate cyclase, cyaB-type, probable (cyaB) [im... 43 0.020
(P27515) RecName: Full=Uridine kinase; EC=2.7.1.48; Alt... 42 0.026
CU928165_244(CU928165|pid:none) Kluyveromyces thermotolerans str... 42 0.034
CP001399_1837(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,... 42 0.034
CP001400_1739(CP001400|pid:none) Sulfolobus islandicus M.14.25, ... 42 0.045
CP000049_15(CP000049|pid:none) Borrelia turicatae 91E135, comple... 42 0.045
(O74427) RecName: Full=Uridine kinase; EC=2.7.1.48; Alt... 42 0.045
AE016817_688(AE016817|pid:none) Ashbya gossypii (= Eremothecium ... 41 0.058
CP000102_1061(CP000102|pid:none) Methanosphaera stadtmanae DSM 3... 41 0.076
FM992690_392(FM992690|pid:none) Candida dubliniensis CD36 chromo... 40 0.100
AK119065_1(AK119065|pid:none) Arabidopsis thaliana At1g63880 mRN... 40 0.100
CR382134_367(CR382134|pid:none) Debaryomyces hansenii strain CBS... 40 0.13
AB009048_6(AB009048|pid:none) Arabidopsis thaliana genomic DNA, ... 40 0.17
(Q662Z7) RecName: Full=Uridine kinase; EC=2.7.1.48; Alt... 40 0.17
CP000232_521(CP000232|pid:none) Moorella thermoacetica ATCC 3907... 40 0.17
(B5RLM3) RecName: Full=Uridine kinase; EC=2.7.1.48; Alt... 39 0.22
FN392320_824(FN392320|pid:none) Pichia pastoris GS115 chromosome... 39 0.22
CP000698_685(CP000698|pid:none) Geobacter uraniireducens Rf4, co... 39 0.29
AE010299_3938(AE010299|pid:none) Methanosarcina acetivorans str.... 39 0.38
BX842651_312(BX842651|pid:none) Bdellovibrio bacteriovorus compl... 38 0.49
CP000477_794(CP000477|pid:none) Methanosaeta thermophila PT, com... 38 0.49
CP000867_266(CP000867|pid:none) Methanococcus maripaludis C6, co... 38 0.65
BA000023_768(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA, ... 38 0.65
CP000852_717(CP000852|pid:none) Caldivirga maquilingensis IC-167... 38 0.65
CP000609_974(CP000609|pid:none) Methanococcus maripaludis C5, co... 38 0.65
AP008971_510(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA,... 38 0.65
AP009179_1906(AP009179|pid:none) Sulfurovum sp. NBC37-1 genomic ... 37 0.84
CP001390_888(CP001390|pid:none) Geobacter sp. FRC-32, complete g... 37 0.84
FN392320_946(FN392320|pid:none) Pichia pastoris GS115 chromosome... 37 0.84
CP000745_1628(CP000745|pid:none) Methanococcus maripaludis C7, c... 37 0.84
CP000473_3143(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 37 0.84
AP009389_807(AP009389|pid:none) Pelotomaculum thermopropionicum ... 37 0.84
CP000049_694(CP000049|pid:none) Borrelia turicatae 91E135, compl... 37 0.84
CP001114_609(CP001114|pid:none) Deinococcus deserti VCD115, comp... 37 1.1
CP000716_1330(CP000716|pid:none) Thermosipho melanesiensis BI429... 37 1.1
AE008384_868(AE008384|pid:none) Methanosarcina mazei strain Goe1... 37 1.1
CP001615_2620(CP001615|pid:none) Exiguobacterium sp. AT1b, compl... 37 1.1
AE000513_337(AE000513|pid:none) Deinococcus radiodurans R1 chrom... 37 1.4
CP001124_599(CP001124|pid:none) Geobacter bemidjiensis Bem, comp... 37 1.4
CP000155_1621(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 37 1.4
CP000048_695(CP000048|pid:none) Borrelia hermsii DAH, complete g... 36 1.9
CP000742_1472(CP000742|pid:none) Methanococcus vannielii SB, com... 36 1.9
CP000769_3382(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, c... 36 1.9
CP000546_631(CP000546|pid:none) Burkholderia mallei NCTC 10229 c... 36 1.9
CP001104_1399(CP001104|pid:none) Eubacterium eligens ATCC 27750,... 36 2.5
CP000025_1175(CP000025|pid:none) Campylobacter jejuni RM1221, co... 36 2.5
CP000814_1012(CP000814|pid:none) Campylobacter jejuni subsp. jej... 36 2.5
(O69300) RecName: Full=ATP-dependent protease La; EC=3.... 36 2.5
BX571965_1320(BX571965|pid:none) Burkholderia pseudomallei strai... 35 3.2
CP001177_2656(CP001177|pid:none) Bacillus cereus AH187, complete... 35 3.2
BC091657_1(BC091657|pid:none) Danio rerio zgc:113113, mRNA (cDNA... 35 3.2
CP000148_2513(CP000148|pid:none) Geobacter metallireducens GS-15... 35 3.2
AM746676_3152(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 35 3.2
CP001185_1479(CP001185|pid:none) Thermosipho africanus TCF52B, c... 35 4.2
CP001636_328(CP001636|pid:none) Variovorax paradoxus S110 chromo... 35 4.2
BX950229_620(BX950229|pid:none) Methanococcus maripaludis strain... 35 4.2
CP000860_1413(CP000860|pid:none) Candidatus Desulforudis audaxvi... 35 4.2
CP001022_2031(CP001022|pid:none) Exiguobacterium sibiricum 255-1... 35 4.2
AY871961_1(AY871961|pid:none) Synthetic construct hypothetical p... 35 4.2
CP000359_424(CP000359|pid:none) Deinococcus geothermalis DSM 113... 35 4.2
AP006841_3191(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,... 35 4.2
(Q9V225) RecName: Full=Uncharacterized protein PYRAB02490; &AJ2... 35 4.2
CP000382_1887(CP000382|pid:none) Clostridium novyi NT, complete ... 35 4.2
CP000839_190(CP000839|pid:none) Acaryochloris marina MBIC11017 p... 35 4.2
CP001022_2109(CP001022|pid:none) Exiguobacterium sibiricum 255-1... 35 4.2
CP001129_1414(CP001129|pid:none) Streptococcus equi subsp. zooep... 35 5.5
AE010300_3593(AE010300|pid:none) Leptospira interrogans serovar ... 35 5.5
CP000246_1610(CP000246|pid:none) Clostridium perfringens ATCC 13... 35 5.5
AE000520_659(AE000520|pid:none) Treponema pallidum subsp. pallid... 35 5.5
CP000976_692(CP000976|pid:none) Borrelia duttonii Ly, complete g... 35 5.5
AC165446_30(AC165446|pid:none) Medicago truncatula clone mth2-61... 35 5.5
AC007764_17(AC007764|pid:none) Genomic sequence for Arabidopsis ... 35 5.5
CP001124_683(CP001124|pid:none) Geobacter bemidjiensis Bem, comp... 35 5.5
CP000812_1914(CP000812|pid:none) Thermotoga lettingae TMO, compl... 35 5.5
CP000716_1163(CP000716|pid:none) Thermosipho melanesiensis BI429... 35 5.5
CP000249_3415(CP000249|pid:none) Frankia sp. CcI3, complete geno... 35 5.5
CP000153_414(CP000153|pid:none) Sulfurimonas denitrificans DSM 1... 35 5.5
BA000016_1390(BA000016|pid:none) Clostridium perfringens str. 13... 35 5.5
CP000805_656(CP000805|pid:none) Treponema pallidum subsp. pallid... 35 5.5
CP001089_478(CP001089|pid:none) Geobacter lovleyi SZ, complete g... 35 5.5
FM204883_1575(FM204883|pid:none) Streptococcus equi subsp. equi ... 35 5.5
CP000348_2337(CP000348|pid:none) Leptospira borgpetersenii serov... 35 5.5
AE017221_418(AE017221|pid:none) Thermus thermophilus HB27, compl... 34 7.1
AP008226_1111(AP008226|pid:none) Thermus thermophilus HB8 genomi... 34 7.1
CP000911_1872(CP000911|pid:none) Brucella suis ATCC 23445 chromo... 34 7.1
BX548174_1127(BX548174|pid:none) Prochlorococcus marinus MED4 co... 34 7.1
CP000887_1918(CP000887|pid:none) Brucella abortus S19 chromosome... 34 7.1
AB477241_6(AB477241|pid:none) Staphylococcus sp. T-02 ureA, ureB... 34 7.1
CU928166_221(CU928166|pid:none) Kluyveromyces thermotolerans str... 34 7.1
CP000502_194(CP000502|pid:none) Pichia stipitis CBS 6054 chromos... 34 7.1
CP000679_1434(CP000679|pid:none) Caldicellulosiruptor saccharoly... 34 7.1
BT079448_1(BT079448|pid:none) Esox lucius clone eluc-evq-528-346... 34 7.1
AL161538_32(AL161538|pid:none) Arabidopsis thaliana DNA chromoso... 34 7.1
AE017221_744(AE017221|pid:none) Thermus thermophilus HB27, compl... 34 7.1
(Q2KVK2) RecName: Full=Methionine import ATP-binding protein met... 34 7.1
CP001488_2014(CP001488|pid:none) Brucella melitensis ATCC 23457 ... 34 7.1
AE014291_2070(AE014291|pid:none) Brucella suis 1330 chromosome I... 34 7.1
BA000026_693(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c... 34 7.1
(Q09769) RecName: Full=Putative Lon protease homolog, mitochondr... 34 7.1
CP000414_509(CP000414|pid:none) Leuconostoc mesenteroides subsp.... 34 9.3
CP001393_873(CP001393|pid:none) Anaerocellum thermophilum DSM 67... 34 9.3
AF326352_1(AF326352|pid:none) Caenorhabditis elegans putative Rh... 34 9.3
CP000148_3177(CP000148|pid:none) Geobacter metallireducens GS-15... 34 9.3
(A5IV74) RecName: Full=Urease accessory protein ureG; &(A6QJD3)... 34 9.3
(P37945) RecName: Full=ATP-dependent protease La 1; EC=... 34 9.3
AE017125_90(AE017125|pid:none) Helicobacter hepaticus ATCC 51449... 34 9.3
BC146741_1(BC146741|pid:none) Danio rerio similar to URKL1, mRNA... 34 9.3
CP000724_3638(CP000724|pid:none) Alkaliphilus metalliredigens QY... 34 9.3
AE017180_916(AE017180|pid:none) Geobacter sulfurreducens PCA, co... 34 9.3
AE017355_2509(AE017355|pid:none) Bacillus thuringiensis serovar ... 34 9.3
CP000915_154(CP000915|pid:none) Francisella tularensis subsp. me... 34 9.3
A96956(A96956) ATP-dependent protease (lonA) [imported] - Clostr... 34 9.3
CP001322_1237(CP001322|pid:none) Desulfatibacillum alkenivorans ... 34 9.3
(Q6G729) RecName: Full=Urease accessory protein ureG; &(Q8NV88)... 34 9.3
AB060647_1(AB060647|pid:none) Caenorhabditis elegans exc-5 mRNA ... 34 9.3
CP000552_1067(CP000552|pid:none) Prochlorococcus marinus str. MI... 34 9.3
CP000319_2870(CP000319|pid:none) Nitrobacter hamburgensis X14, c... 34 9.3
CP000777_801(CP000777|pid:none) Leptospira biflexa serovar Patoc... 34 9.3
(Q2YYV2) RecName: Full=Urease accessory protein ureG; &AJ938182... 34 9.3
(Q4A0J8) RecName: Full=Urease accessory protein ureG; &AP008934... 34 9.3
EU784038_1(EU784038|pid:none) Nicotiana tabacum NBS-coding resis... 34 9.3
T19678(T19678)hypothetical protein C33D9.1 - Caenorhabditis eleg... 34 9.3
AP009493_1435(AP009493|pid:none) Streptomyces griseus subsp. gri... 34 9.3
CP000505_146(CP000505|pid:none) Thermofilum pendens Hrk 5, compl... 34 9.3
AY088733_1(AY088733|pid:none) Arabidopsis thaliana clone 93530 m... 34 9.3
AE017347_223(AE017347|pid:none) Cryptococcus neoformans var. neo... 34 9.3
AC026480_9(AC026480|pid:none) Arabidopsis thaliana chromosome 1 ... 34 9.3
(Q5HLV8) RecName: Full=Urease accessory protein ureG; &CP000029... 34 9.3
>AC016662_15(AC016662|pid:none) Arabidopsis thaliana chromosome 1
BAC F2P9 genomic sequence, complete sequence.
&AF462846_1(AF462846|pid:none)
&BT002630_1(BT002630|pid:none) &E96767(E96767)
Length = 643
Score = 135 bits (339), Expect = 3e-30
Identities = 69/157 (43%), Positives = 104/157 (66%), Gaps = 1/157 (0%)
Frame = +2
Query: 329 QGVTVDMIHSVLNKSTIQENTARYYDIYLIPPNTTFANSSSCD-WIRVRNADGQYSIMFS 505
+ VT + + + L++ +E T YDIYL+PP + +C ++R+RN DG+Y++MF
Sbjct: 257 KAVTPEQMKAALSED-FKERTEETYDIYLLPPGE---DPEACQSYLRMRNRDGKYNLMFE 312
Query: 506 EEIKEGPFIISPRVDFVVGVNMLGGLMSLGYQMVAIIHRKSTIFKDGKIIISYDELEELG 685
E + + PFIISPR+ F V V +LGGLM+LGY + I+ RKS IF D K+I+ D LE+L
Sbjct: 313 EWVTDRPFIISPRITFEVSVRLLGGLMALGYTIATILKRKSHIFDDDKVIVKTDWLEQLN 372
Query: 686 QTFVQIKGFDATSVQEAGKKLGLENNYLQKSYIELYQ 796
+T+VQ++G D T V+ +LGLE +Y+ +YIE Q
Sbjct: 373 RTYVQVQGKDRTFVKNVADQLGLEGSYVPHTYIEQIQ 409
Score = 77.4 bits (189), Expect = 7e-13
Identities = 37/81 (45%), Positives = 59/81 (72%)
Frame = +1
Query: 70 EIEVIPRPDKDDRYTIKPLKDTLSFDKGFFLAVRAIQSIRKKSQGSVIVVGIAGPSGAGK 249
++++I R D RY I P++D LSF+KGF+ +RA Q + +K+ G +I+VG+AGPSGAGK
Sbjct: 21 QVQLIKRKDSG-RYEIVPIEDPLSFEKGFYAVIRACQLLAQKNDG-LILVGLAGPSGAGK 78
Query: 250 TSIAQKIVSVLPKSILISLDN 312
T +KI++ +P +I++DN
Sbjct: 79 TIFTEKILNFMPSIAIINMDN 99
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,317,664,057
Number of extensions: 23840231
Number of successful extensions: 105400
Number of sequences better than 10.0: 145
Number of HSP's gapped: 105357
Number of HSP's successfully gapped: 160
Length of query: 339
Length of database: 1,051,180,864
Length adjustment: 129
Effective length of query: 210
Effective length of database: 633,664,753
Effective search space: 133069598130
Effective search space used: 133069598130
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
1 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
1 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |