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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U06250-1
Contig ID Contig-U06250-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U06250-1 (Contig-U06250-1Q) /CSM_Contig/Contig-U06250-1Q.Seq.d
AAAGACCAATAAAAGTTTTTACTTTTTAAATACTCATTTAGATCATCAAT
CTGAATTGGCAAGAAGTGAAGGTACAATGTTAATTAAAAGTTTCATAGCA
ACATTAAAACCTCAAATACCATTGATACTAGTGGGTGATTTCAATTCCAA
CGATTACCAAAAACCAATTGAAAATTTAATTTCATCAACTATTGATATCA
ATTTCGCAATAAAGTATATTCAATTATTAGAGATTCCAATTCGTGATGAT
ATTGCATTTCAAACATTATTCAATACAAAAACAATAGCAAATTGTAAAAT
TGGACCAGATTCAACATTCACTGGTTTCGATTGTGCCTATTCTGAAACTA
TTGATTATATCTTTATAAATCAACAATTTAAAGCAAAAACATTTGTAGTA
TTTAATAATCATCCATCAAAAGTTACTAAAAATTCAACAATTGCAAGTGA
TCATTTTCCAATTGTTGCTGATTTAAAATTTTTATAAAATAAATAAATAA
ATAAATAAAATAAAAAAAAAAA
Gap no gap
Contig length 522
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 3917337
End point 3916815
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U06250
List of clone(s) 

est1=VSA428Z,1,523
Translated Amino Acid sequence 
KTNKSFYFLNTHLDHQSELARSEGTMLIKSFIATLKPQIPLILVGDFNSNDYQKPIENLI
SSTIDINFAIKYIQLLEIPIRDDIAFQTLFNTKTIANCKIGPDSTFTGFDCAYSETIDYI
FINQQFKAKTFVVFNNHPSKVTKNSTIASDHFPIVADLKFL*nk*ink*nkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
kdq*kfllfkysfrssi*igkk*rynvn*kfhsniktsntidtsg*fqfqrlpktn*kfn
finy*yqfrnkvysiirdsns**ycisniiqyknnskl*nwtrfnihwfrlclf*ny*ly
lyksti*sknicsi**ssiksy*kfnnck*sfsncc*fkifik*ink*ik*kkk


Frame B:
KTNKSFYFLNTHLDHQSELARSEGTMLIKSFIATLKPQIPLILVGDFNSNDYQKPIENLI
SSTIDINFAIKYIQLLEIPIRDDIAFQTLFNTKTIANCKIGPDSTFTGFDCAYSETIDYI
FINQQFKAKTFVVFNNHPSKVTKNSTIASDHFPIVADLKFL*nk*ink*nkkk


Frame C:
rpikvftf*ili*iinlnwqevkvqc*lkvs*qh*nlkyh*y*wvisiptitknqlki*f
hqllisisq*sifny*rfqfvmilhfkhysiqkq*qivkldqiqhslvsivpilklliis
l*innlkqkhl*yliiihqkllkiqqlqviifqllli*nfykink*inkikkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06250-1 (Contig-U06250-1Q)
/CSM_Contig/Contig-U06250-1Q.Seq.d
         (522 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06250-1 (Contig-U06250-1Q) /CSM_Contig/Conti...   934  0.0
Contig-U04608-1 (Contig-U04608-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U14863-1 (Contig-U14863-1Q) /CSM_Contig/Conti...    34  0.14
Contig-U13905-1 (Contig-U13905-1Q) /CSM_Contig/Conti...    34  0.14
Contig-U12167-1 (Contig-U12167-1Q) /CSM_Contig/Conti...    34  0.14
Contig-U10976-1 (Contig-U10976-1Q) /CSM_Contig/Conti...    34  0.14
Contig-U09475-1 (Contig-U09475-1Q) /CSM_Contig/Conti...    34  0.14
Contig-U09098-1 (Contig-U09098-1Q) /CSM_Contig/Conti...    34  0.14
Contig-U05923-1 (Contig-U05923-1Q) /CSM_Contig/Conti...    34  0.14
Contig-U14676-1 (Contig-U14676-1Q) /CSM_Contig/Conti...    32  0.57

>Contig-U06250-1 (Contig-U06250-1Q) /CSM_Contig/Contig-U06250-1Q.Seq.d
          Length = 522

 Score =  934 bits (471), Expect = 0.0
 Identities = 471/471 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagaccaataaaagtttttactttttaaatactcatttagatcatcaatctgaattggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaagaccaataaaagtttttactttttaaatactcatttagatcatcaatctgaattggc 60

                                                                       
Query: 61  aagaagtgaaggtacaatgttaattaaaagtttcatagcaacattaaaacctcaaatacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aagaagtgaaggtacaatgttaattaaaagtttcatagcaacattaaaacctcaaatacc 120

                                                                       
Query: 121 attgatactagtgggtgatttcaattccaacgattaccaaaaaccaattgaaaatttaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attgatactagtgggtgatttcaattccaacgattaccaaaaaccaattgaaaatttaat 180

                                                                       
Query: 181 ttcatcaactattgatatcaatttcgcaataaagtatattcaattattagagattccaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttcatcaactattgatatcaatttcgcaataaagtatattcaattattagagattccaat 240

                                                                       
Query: 241 tcgtgatgatattgcatttcaaacattattcaatacaaaaacaatagcaaattgtaaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcgtgatgatattgcatttcaaacattattcaatacaaaaacaatagcaaattgtaaaat 300

                                                                       
Query: 301 tggaccagattcaacattcactggtttcgattgtgcctattctgaaactattgattatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tggaccagattcaacattcactggtttcgattgtgcctattctgaaactattgattatat 360

                                                                       
Query: 361 ctttataaatcaacaatttaaagcaaaaacatttgtagtatttaataatcatccatcaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctttataaatcaacaatttaaagcaaaaacatttgtagtatttaataatcatccatcaaa 420

                                                              
Query: 421 agttactaaaaattcaacaattgcaagtgatcattttccaattgttgctga 471
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agttactaaaaattcaacaattgcaagtgatcattttccaattgttgctga 471


>Contig-U04608-1 (Contig-U04608-1Q) /CSM_Contig/Contig-U04608-1Q.Seq.d
          Length = 1205

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 402 ttaataatcatccatcaaaa 421
           ||||||||||||||||||||
Sbjct: 521 ttaataatcatccatcaaaa 540


>Contig-U14863-1 (Contig-U14863-1Q) /CSM_Contig/Contig-U14863-1Q.Seq.d
          Length = 566

 Score = 34.2 bits (17), Expect = 0.14
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 166 aattgaaaatttaattt 182
           |||||||||||||||||
Sbjct: 301 aattgaaaatttaattt 317


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9123
Number of Sequences: 6905
Number of extensions: 9123
Number of successful extensions: 989
Number of sequences better than 10.0: 317
length of query: 522
length of database: 5,674,871
effective HSP length: 16
effective length of query: 506
effective length of database: 5,564,391
effective search space: 2815581846
effective search space used: 2815581846
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11. 7
Homology vs DNA 
Query= Contig-U06250-1 (Contig-U06250-1Q) /CSM_Contig/Contig-U06250-1Q.Seq.d
         (522 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU261470) Dictyostelium discoideum vegetative cDNA clone:VS...   938   0.0    1
(AC135348) Homo sapiens chromosome 17, clone RP13-822L18, co...    40   0.011  3
(AC025138) Homo sapiens chromosome 15, clone RP11-291O21, co...    40   0.023  3
(AC024930) Homo sapiens chromosome 15 clone RP11-228M15, WOR...    40   0.024  3
(AC091565) Homo sapiens chromosome 15, clone RP11-228M15, co...    40   0.032  4
(AC137568) Homo sapiens chromosome 15, clone RP11-1217C12, c...    40   0.041  4
(AC136776) Homo sapiens chromosome 15 clone RP11-303F22 map ...    40   0.058  4
(AC131193) Rattus norvegicus clone CH230-47D15, *** SEQUENCI...    50   0.080  1
(AP007636) Lotus japonicus genomic DNA, chromosome 5, clone:...    50   0.080  1
(AP007419) Lotus japonicus genomic DNA, chromosome 5, clone:...    50   0.080  1
(CB887630) Lice_02_E01_T3 Body louse cDNA library Pediculus ...    48   0.31   1
(CB886680) Lice_01_A14_T3 Body louse cDNA library Pediculus ...    48   0.31   1
(CP000084) Candidatus Pelagibacter ubique HTCC1062, complete...    40   0.42   14
(AC097906) Rattus norvegicus clone CH230-147I18, WORKING DRA...    44   0.50   2
(ER307582) 1092343765811 Global-Ocean-Sampling_GS-34-01-01-1...    40   0.62   2
(EJ022778) 1095454009228 Global-Ocean-Sampling_GS-26-01-01-1...    40   0.64   2
(AC016319) Homo sapiens clone RP11-28M2, WORKING DRAFT SEQUE...    40   0.65   4
(AC222896) Bos taurus clone CH240-436C3, WORKING DRAFT SEQUE...    40   0.70   4
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    38   0.70   13
(AL133547) Human DNA sequence from clone RP11-140C18 on chro...    38   1.1    4
(AC201689) Strongylocentrotus purpuratus clone R3-56D4, WORK...    38   1.2    4
(BX248304) Zebrafish DNA sequence from clone CH211-196K22 in...    46   1.2    1
(EF173367) Aedes aegypti clone BAC 124C17, complete sequence.      46   1.2    1
(AC117453) Homo sapiens 3 BAC RP11-321N5 (Roswell Park Cance...    46   1.2    1
(AC217575) Pongo abelii chromosome UNKNOWN clone CH276-4E15,...    46   1.2    1
(AC211390) Zea mays chromosome 1 clone CH201-23K12; ZMMBBc00...    46   1.2    1
(AC209689) Zea mays chromosome 5 clone CH201-169O19; ZMMBBc0...    46   1.2    1
(AC206271) Zea mays chromosome 4 clone CH201-163C8; ZMMBBc01...    46   1.2    1
(AC200419) Zea mays chromosome 1 clone CH201-194F20; ZMMBBc0...    46   1.2    1
(AC197105) Zea mays chromosome 4 clone CH201-188O10; ZMMBBc0...    46   1.2    1
(AC191049) Zea mays chromosome 1 clone CH201-419K15; ZMMBBc0...    46   1.2    1
(AC184599) Strongylocentrotus purpuratus clone R3-3103M10, W...    46   1.2    1
(AC184470) Strongylocentrotus purpuratus clone R3-4001E5, WO...    46   1.2    1
(AC180498) Strongylocentrotus purpuratus clone R3-3099G13, W...    46   1.2    1
(AM623518) Entamoeba invadens IP1 GSS, clone inv132h01.q1k.        46   1.2    1
(CZ338210) ZMMBF0105P24f ZMMBF Zea mays genomic clone ZMMBF0...    46   1.2    1
(CU840918) A BAC library has been constructed from PN40024 g...    46   1.2    1
(BG187390) RST6381 Athersys RAGE Library Homo sapiens cDNA, ...    46   1.2    1
(AC128365) Rattus norvegicus clone CH230-46O19, WORKING DRAF...    44   1.6    3
(AL445564) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    38   1.6    7
(AE017244) Mycoplasma hyopneumoniae 7448, complete genome.         34   2.0    12
(BX663515) Zebrafish DNA sequence from clone DKEY-228G21 in ...    36   2.4    6
(DQ366735) Uncultured Prochlorococcus marinus clone HOT0M-2B...    40   2.7    3
(AC122671) Rattus norvegicus clone CH230-87H4, *** SEQUENCIN...    42   3.2    6
(CR936478) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   3.5    4
(CU914448) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   3.7    6
(AM428776) Vitis vinifera contig VV78X115754.4, whole genome...    40   3.7    2
(AL603863) Human DNA sequence from clone RP11-346A3 on chrom...    36   4.1    4
(CR382384) Zebrafish DNA sequence from clone CH211-15B7 in l...    40   4.8    4
(AC226502) Solanum lycopersicum chromosome 2 clone C02HBa003...    36   4.9    5
(CU571261) Zebrafish DNA sequence from clone DKEY-250G20 in ...    44   4.9    1
(CR855880) Zebrafish DNA sequence from clone DKEY-215C14 in ...    44   4.9    1
(CR339055) Zebrafish DNA sequence from clone CH211-67C24 in ...    44   4.9    1
(BX927174) Zebrafish DNA sequence from clone DKEY-96F10 in l...    44   4.9    1
(BX649468) Zebrafish DNA sequence from clone CH211-152C2 in ...    44   4.9    1
(AL929207) Zebrafish DNA sequence from clone CH211-214P16 in...    44   4.9    1
(BV346682) S230P6169FG2.T0 Rottweiler Canis familiaris STS g...    44   4.9    1
(AM430838) Vitis vinifera contig VV78X108372.22, whole genom...    44   4.9    1
(AC216685) Populus trichocarpa clone POP033-J03, complete se...    44   4.9    1
(AB005233) Arabidopsis thaliana genomic DNA, chromosome 5, P...    44   4.9    1
(AC232064) Solanum tuberosum strain Diploid genotype RH89-03...    44   4.9    1
(AC195305) Zea mays chromosome 4 clone CH201-315A7; ZMMBBc03...    44   4.9    1
(AC192374) Zea mays chromosome 4 clone CH201-272M12; ZMMBBc0...    44   4.9    1
(FH719597) CHO_OF5060xg22r1.ab1 CHO_OF5 Nicotiana tabacum ge...    44   4.9    1
(FH489731) CHO_OF4347xn05r1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   4.9    1
(FH395131) CHO_OF4296xk09r2.ab1 CHO_OF4 Nicotiana tabacum ge...    44   4.9    1
(FH249425) CHO_OF3161xh19r1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   4.9    1
(FH239614) CHO_OF3103xl08r1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   4.9    1
(FH187580) CHO_OF3086xc05r1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   4.9    1
(FH105036) CHO_OF3124xd02r1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   4.9    1
(FH104878) CHO_OF3124xd01r1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   4.9    1
(FH102407) CHO_OF3098xf24r1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   4.9    1
(FH004009) CHO_OF204xi19r2.ab1 CHO_OF Nicotiana tabacum geno...    44   4.9    1
(ET907074) CHO_OF174xn05r1.ab1 CHO_OF Nicotiana tabacum geno...    44   4.9    1
(ET895895) CHO_OF150xd02r2.ab1 CHO_OF Nicotiana tabacum geno...    44   4.9    1
(ET879863) CHO_OF619xg19f1.ab1 CHO_OF Nicotiana tabacum geno...    44   4.9    1
(ET728665) CHO_OF144xj16f1.ab1 CHO_OF Nicotiana tabacum geno...    44   4.9    1
(ER299942) 1092343675651 Global-Ocean-Sampling_GS-34-01-01-1...    44   4.9    1
(AM684417) Entamoeba terrapinae GSS, clone terra270b01.p1k.        44   4.9    1
(ED113991) AUAC-aaj42a12.b1 Ascaris suum whole genome shotgu...    44   4.9    1
(DU793570) APKH5080.b2 HF770_12-21-03 uncultured marine micr...    44   4.9    1
(DH152770) Oryzias latipes Fosmid clone:GOLWFno422_k10, reve...    44   4.9    1
(DE446073) Bombyx mori genomic DNA, Fosmid clone:GBMFno36_l1...    44   4.9    1
(CL285575) ZMMBBb0630B17r ZMMBBb (HindIII) Zea mays subsp. m...    44   4.9    1
(CC839219) ZMMBBc0493P20f ZMMBBc Zea mays subsp. mays genomi...    44   4.9    1
(BX157529) Danio rerio genomic clone DKEY-125L11, genomic su...    44   4.9    1
(BH908399) SALK_047945.54.00.x Arabidopsis thaliana TDNA ins...    44   4.9    1
(FG934928) UCRVU09_CCNT13377_g1 Cowpea UCR 707 Mixed Tissue ...    44   4.9    1
(FG856522) UCRVU05_CCNN20730_g1 Cowpea IT84S-2049 Mixed Tiss...    44   4.9    1
(FG842911) UCRVU05_CCNN5451_g1 Cowpea IT84S-2049 Mixed Tissu...    44   4.9    1
(FG842910) UCRVU05_CCNN5451_b1 Cowpea IT84S-2049 Mixed Tissu...    44   4.9    1
(ER366219) 1093022033249 Global-Ocean-Sampling_GS-34-01-01-1...    36   5.5    2
(AC181476) Strongylocentrotus purpuratus clone R3-1111H15, W...    38   5.8    3
(AC153992) Mus musculus 6 BAC RP24-116E17 (Roswell Park Canc...    38   5.9    2
(DL005602) NUCLEIC ACID PROBES AND NUCLEIC ACID ANALOG PROBES.     36   6.0    3
(CS459527) Sequence 8 from Patent WO2006117596.                    36   6.0    3
(AQ328356) nbxb0042N06f CUGI Rice BAC Library Oryza sativa J...    36   6.1    2
(AG935701) Drosophila ananassae DNA, clone: DNB1-003H17.R.fa...    34   6.5    2
(BX510657) Zebrafish DNA sequence from clone CH211-142K18 in...    32   6.6    6
(AY661800) Weissella paramesenteroides hypothetical 3-oxoacy...    40   6.7    2

>(AU261470) Dictyostelium discoideum vegetative cDNA clone:VSA428,
           3' end single read.
          Length = 523

 Score =  938 bits (473), Expect = 0.0
 Identities = 473/473 (100%)
 Strand = Plus / Plus


Query: 1   aaagaccaataaaagtttttactttttaaatactcatttagatcatcaatctgaattggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaagaccaataaaagtttttactttttaaatactcatttagatcatcaatctgaattggc 60


Query: 61  aagaagtgaaggtacaatgttaattaaaagtttcatagcaacattaaaacctcaaatacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aagaagtgaaggtacaatgttaattaaaagtttcatagcaacattaaaacctcaaatacc 120


Query: 121 attgatactagtgggtgatttcaattccaacgattaccaaaaaccaattgaaaatttaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attgatactagtgggtgatttcaattccaacgattaccaaaaaccaattgaaaatttaat 180


Query: 181 ttcatcaactattgatatcaatttcgcaataaagtatattcaattattagagattccaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttcatcaactattgatatcaatttcgcaataaagtatattcaattattagagattccaat 240


Query: 241 tcgtgatgatattgcatttcaaacattattcaatacaaaaacaatagcaaattgtaaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcgtgatgatattgcatttcaaacattattcaatacaaaaacaatagcaaattgtaaaat 300


Query: 301 tggaccagattcaacattcactggtttcgattgtgcctattctgaaactattgattatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tggaccagattcaacattcactggtttcgattgtgcctattctgaaactattgattatat 360


Query: 361 ctttataaatcaacaatttaaagcaaaaacatttgtagtatttaataatcatccatcaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctttataaatcaacaatttaaagcaaaaacatttgtagtatttaataatcatccatcaaa 420


Query: 421 agttactaaaaattcaacaattgcaagtgatcattttccaattgttgctgatt 473
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agttactaaaaattcaacaattgcaagtgatcattttccaattgttgctgatt 473

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 638,908,395
Number of extensions: 40041034
Number of successful extensions: 3432932
Number of sequences better than 10.0: 122
Length of query: 522
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 499
Effective length of database: 93,106,754,628
Effective search space: 46460270559372
Effective search space used: 46460270559372
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 6.21
Homology vs Protein 
Query= Contig-U06250-1 (Contig-U06250-1Q) /CSM_Contig/Contig-U06250-1Q.Seq.d
         (522 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000140_2198(CP000140|pid:none) Parabacteroides distasonis ATCC...    73   5e-12
CU207366_2520(CU207366|pid:none) Gramella forsetii KT0803 comple...    67   3e-10
CP000967_901(CP000967|pid:none) Xanthomonas oryzae pv. oryzae PX...    60   3e-08
AE1476(AE1476) hypothetical protein homolog lin0348 [imported] -...    60   4e-08
AD1115(AD1115) hypothetical protein lmo0323 [imported] - Listeri...    59   6e-08
CP001032_3683(CP001032|pid:none) Opitutus terrae PB90-1, complet...    57   4e-07
FM242711_320(FM242711|pid:none) Listeria monocytogenes Clip81459...    57   4e-07
CP000140_1628(CP000140|pid:none) Parabacteroides distasonis ATCC...    57   4e-07
CP001175_2281(CP001175|pid:none) Listeria monocytogenes HCC23, c...    55   8e-07
CP000139_599(CP000139|pid:none) Bacteroides vulgatus ATCC 8482, ...    55   8e-07
AE013598_3857(AE013598|pid:none) Xanthomonas oryzae pv. oryzae K...    55   8e-07
AP006841_1753(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,...    55   1e-06
AP006841_1322(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,...    54   2e-06
CP000721_2301(CP000721|pid:none) Clostridium beijerinckii NCIMB ...    54   2e-06
CP000685_1559(CP000685|pid:none) Flavobacterium johnsoniae UW101...    54   2e-06
AE008923_669(AE008923|pid:none) Xanthomonas axonopodis pv. citri...    54   3e-06
CR626927_1242(CR626927|pid:none) Bacteroides fragilis NCTC 9343,...    53   5e-06
AM039952_733(AM039952|pid:none) Xanthomonas campestris pv. vesic...    52   9e-06
AE008922_3398(AE008922|pid:none) Xanthomonas campestris pv. camp...    51   2e-05
AM920689_760(AM920689|pid:none) Xanthomonas campestris pv. campe...    51   2e-05
AM743169_1739(AM743169|pid:none) Stenotrophomonas maltophilia K2...    51   2e-05
AP006627_204(AP006627|pid:none) Bacillus clausii KSM-K16 DNA, co...    50   3e-05
CP001056_1889(CP001056|pid:none) Clostridium botulinum B str. Ek...    50   3e-05
AE015928_2630(AE015928|pid:none) Bacteroides thetaiotaomicron VP...    50   3e-05
CP001111_1572(CP001111|pid:none) Stenotrophomonas maltophilia R5...    49   6e-05
EF089402_13(EF089402|pid:none) Uncultured marine bacterium HF10_...    49   1e-04
CP000246_1282(CP000246|pid:none) Clostridium perfringens ATCC 13...    48   1e-04
AM420293_1509(AM420293|pid:none) Saccharopolyspora erythraea NRR...    47   2e-04
FM992689_63(FM992689|pid:none) Candida dubliniensis CD36 chromos...    47   3e-04
DQ242647_1(DQ242647|pid:none) Phanerochaete chrysosporium mannos...    47   3e-04
AE015928_3781(AE015928|pid:none) Bacteroides thetaiotaomicron VP...    47   3e-04
CP000282_2940(CP000282|pid:none) Saccharophagus degradans 2-40, ...    45   0.001
CR382137_630(CR382137|pid:none) Debaryomyces hansenii strain CBS...    45   0.001
CP000356_1009(CP000356|pid:none) Sphingopyxis alaskensis RB2256,...    45   0.001
AE005673_859(AE005673|pid:none) Caulobacter crescentus CB15, com...    45   0.001
AM711867_742(AM711867|pid:none) Clavibacter michiganensis subsp....    45   0.001
CP000885_689(CP000885|pid:none) Clostridium phytofermentans ISDg...    43   0.004
CR378677_279(CR378677|pid:none) Photobacterium profundum SS9 chr...    43   0.004
AE017343_670(AE017343|pid:none) Cryptococcus neoformans var. neo...    42   0.007
AP009552_4590(AP009552|pid:none) Microcystis aeruginosa NIES-843...    40   0.035
AM778935_18(AM778935|pid:none) Microcystis aeruginosa PCC 7806 g...    40   0.046
AP008211_713(AP008211|pid:none) Oryza sativa (japonica cultivar-...    40   0.046
T27633(T27633)hypothetical protein ZC518.3b - Caenorhabditis ele...    39   0.078
AY043268_1(AY043268|pid:none) Caenorhabditis elegans CCR4 mRNA, ...    39   0.078
Z68753_8(Z68753|pid:none) Caenorhabditis elegans Cosmid ZC518, c...    39   0.078
Z68753_7(Z68753|pid:none) Caenorhabditis elegans Cosmid ZC518, c...    39   0.078
CU640366_375(CU640366|pid:none) Podospora anserina genomic DNA c...    38   0.13
AM711867_728(AM711867|pid:none) Clavibacter michiganensis subsp....    38   0.13
EF146029_1(EF146029|pid:none) Populus trichocarpa clone WS0115_A...    37   0.23
BC089295_1(BC089295|pid:none) Xenopus laevis hypothetical protei...    37   0.23
(P79942) RecName: Full=Nocturnin; AltName: Full=Rhythmic message...    37   0.39
BC149515_1(BC149515|pid:none) Bos taurus CCR4 carbon catabolite ...    36   0.50
CR382138_180(CR382138|pid:none) Debaryomyces hansenii strain CBS...    36   0.50
BC133608_1(BC133608|pid:none) Bos taurus CCR4 carbon catabolite ...    36   0.50
BC170786_1(BC170786|pid:none) Xenopus tropicalis CCR4 carbon cat...    36   0.66
(O35710) RecName: Full=Nocturnin; AltName: Full=CCR4 protein hom...    36   0.66
U70139_1(U70139|pid:none) Mus musculus probable nocturnin protei...    36   0.66
AK149340_1(AK149340|pid:none) Mus musculus adult retina cDNA, RI...    36   0.66
AM920436_1922(AM920436|pid:none) Penicillium chrysogenum Wiscons...    35   0.86
AM849034_2602(AM849034|pid:none) Clavibacter michiganensis subsp...    35   1.1
CR382133_421(CR382133|pid:none) Debaryomyces hansenii strain CBS...    35   1.5
CP000496_901(CP000496|pid:none) Pichia stipitis CBS 6054 chromos...    34   1.9
CP000725_500(CP000725|pid:none) Streptococcus gordonii str. Chal...    34   1.9
FN392319_370(FN392319|pid:none) Pichia pastoris GS115 chromosome...    34   1.9
AP010656_268(AP010656|pid:none) Candidatus Azobacteroides pseudo...    34   2.5
BT015292_1(BT015292|pid:none) Drosophila melanogaster GH03334 fu...    34   2.5
AJ579365_5(AJ579365|pid:none) Staphylococcus sciuri pSCFS1 plasm...    33   4.3
FM992691_354(FM992691|pid:none) Candida dubliniensis CD36 chromo...    33   4.3
AF199494_1(AF199494|pid:none) Homo sapiens nocturnin (NOC) precu...    33   4.3
AE014297_1290(AE014297|pid:none) Drosophila melanogaster chromos...    33   4.3
AE014297_1291(AE014297|pid:none) Drosophila melanogaster chromos...    33   4.3
BX842652_240(BX842652|pid:none) Bdellovibrio bacteriovorus compl...    33   5.6
CP000780_1486(CP000780|pid:none) Candidatus Methanoregula boonei...    33   5.6
CP000769_3464(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, c...    32   7.3
CP000233_570(CP000233|pid:none) Lactobacillus salivarius UCC118,...    32   7.3
AF503351_1(AF503351|pid:none) Gallus gallus nocturnin (NOC) mRNA...    32   7.3
CU207366_1500(CU207366|pid:none) Gramella forsetii KT0803 comple...    32   7.3
FM992690_484(FM992690|pid:none) Candida dubliniensis CD36 chromo...    32   7.3
CP000139_1838(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,...    32   9.5
AF109691_6(AF109691|pid:none) Lactobacillus delbrueckii subsp. l...    32   9.5
S78347_1(S78347|pid:none) AHT107 V kappa region=chimeric mouse/h...    32   9.5

>CP000140_2198(CP000140|pid:none) Parabacteroides distasonis ATCC
           8503, complete genome.
          Length = 287

 Score = 72.8 bits (177), Expect = 5e-12
 Identities = 51/160 (31%), Positives = 73/160 (45%), Gaps = 3/160 (1%)
 Frame = +2

Query: 5   TNKSFYFLNTHLDHQSELARSEGTMLIKSFIATLKPQIPLILVGDFNSNDYQKPIENLIS 184
           T K F+FLNTHLDH  ++AR EG  L+      L   +P+I+ GDFN+    +PI+ L +
Sbjct: 151 TGKKFFFLNTHLDHMGKVARHEGASLVLEQAKKLSENLPIIVTGDFNAVPSDEPIQVLTN 210

Query: 185 STIDINFAIKYIQLLEIPIRDDIAFQTLFNTKTIANCKIGPDSTFTGF-DCAYS--ETID 355
            +                       + L +++TIA    GP+ TF  F    Y   E ID
Sbjct: 211 PSDP---------------------RHLTHSRTIAGFIYGPEWTFHDFGKIPYDKREWID 249

Query: 356 YIFINQQFKAKTFVVFNNHPSKVTKNSTIASDHFPIVADL 475
           YIF+    K     V        T N+   SDH P+++ L
Sbjct: 250 YIFVKGNIKVLRHGVLTE-----TLNNLFPSDHCPVISTL 284

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 611,570,231
Number of extensions: 10253273
Number of successful extensions: 20722
Number of sequences better than 10.0: 81
Number of HSP's gapped: 20664
Number of HSP's successfully gapped: 92
Length of query: 174
Length of database: 1,040,966,779
Length adjustment: 120
Effective length of query: 54
Effective length of database: 656,452,579
Effective search space: 35448439266
Effective search space used: 35448439266
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.81  gvh: 0.33  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	 24.0 %: cytoskeletal

>> prediction for Contig-U06250-1 is cyt
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0