| Contig-U06249-1 |
| Contig ID |
Contig-U06249-1 |
| Contig update |
2002. 9.13 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
539 |
| Chromosome number (1..6, M) |
4 |
| Chromosome length |
5430582 |
| Start point |
957355 |
| End point |
956816 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
2 |
| Number of EST |
3 |
| Link to clone list |
U06249 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11. 7 |
| Homology vs DNA |
Query= Contig-U06249-1 (Contig-U06249-1Q) /CSM_Contig/Contig-U06249-1Q.Seq.d
(539 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AU267400) Dictyostelium discoideum vegetative cDNA clone:VS... 539 0.0 2
(AU267401) Dictyostelium discoideum vegetative cDNA clone:VS... 515 0.0 2
(AU261467) Dictyostelium discoideum vegetative cDNA clone:VS... 517 e-156 2
(CR925877) Zebrafish DNA sequence from clone DKEY-71B4 in li... 48 0.33 1
(AC222639) Bos taurus clone CH240-443O9, WORKING DRAFT SEQUE... 38 0.39 3
(EJ996774) 1093024000926 Global-Ocean-Sampling_GS-30-02-01-1... 44 0.73 2
(AC168250) Strongylocentrotus purpuratus clone R3-1001J12, W... 44 1.2 3
(AC159043) Bos taurus clone CH240-39H22, WORKING DRAFT SEQUE... 36 1.2 3
(U21312) Equisetum scirpoides chloroplast light-independent ... 46 1.3 1
(L25766) Equisetum arvense chloroplast light-independent pro... 46 1.3 1
(AC098141) Rattus norvegicus clone CH230-175N2, *** SEQUENCI... 46 1.3 1
(AC230815) Bos taurus clone CH240-498G18, WORKING DRAFT SEQU... 46 1.3 1
(AC230482) Bos taurus clone CH240-507O8, WORKING DRAFT SEQUE... 46 1.3 1
(ER437013) 1092963799711 Global-Ocean-Sampling_GS-35-01-01-1... 46 1.3 1
(ER370911) 1093025005895 Global-Ocean-Sampling_GS-34-01-01-1... 46 1.3 1
(ER367466) 1093022077032 Global-Ocean-Sampling_GS-34-01-01-1... 46 1.3 1
(EJ734576) 1092961082354 Global-Ocean-Sampling_GS-30-02-01-1... 46 1.3 1
(EJ724647) 1092959487346 Global-Ocean-Sampling_GS-30-02-01-1... 46 1.3 1
(EJ174167) 1092344094411 Global-Ocean-Sampling_GS-27-01-01-1... 46 1.3 1
(DU947304) 403378 Tomato EcoRI BAC Library Solanum lycopersi... 46 1.3 1
(DU844625) 26448 Tomato HindIII BAC Library Solanum lycopers... 46 1.3 1
(CL059514) CH216-90C7_RM1.1 CH216 Xenopus (Silurana) tropica... 46 1.3 1
(CE457159) tigr-gss-dog-17000320308247 Dog Library Canis lup... 46 1.3 1
(BZ160137) CH230-289H24.TJ CHORI-230 Segment 2 Rattus norveg... 46 1.3 1
(T00588) wEST01309 Early embryo, Stratagene (cat. #937007) C... 46 1.3 1
(AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)... 32 2.3 2
(BX005212) Zebrafish DNA sequence from clone DKEY-221H2 in l... 34 2.5 2
(CR786570) Zebrafish DNA sequence from clone CH211-280H4 in ... 34 2.7 2
(EL919737) NY4Th2_36_D08.g2_A039 NY4 theronts Ichthyophthiri... 40 3.1 2
(CU694659) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 3.3 3
(AM486839) Vitis vinifera, whole genome shotgun sequence, co... 40 3.4 3
(AL935269) Zebrafish DNA sequence from clone DKEY-46J18. 36 3.8 3
(CU041220) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 3.9 4
(EL906521) INIT2_12_E10.g1_A006 G5 trophont cDNA (INIT2) Ich... 40 4.0 2
(EL906440) INIT2_12_E10.b1_A006 G5 trophont cDNA (INIT2) Ich... 40 4.0 2
(BP579723) Arabidopsis thaliana cDNA clone:RAFL14-23-N24, 3'... 34 4.2 2
(AC171515) Bos taurus clone CH240-304N22, WORKING DRAFT SEQU... 38 4.4 2
(AC141828) Apis mellifera clone CH224-62B7, WORKING DRAFT SE... 38 4.9 2
(BX248097) Zebrafish DNA sequence from clone CH211-232M8 in ... 44 5.1 1
(AC200515) Pongo abelii BAC clone CH276-485C16 from chromoso... 44 5.1 1
(AM476427) Vitis vinifera contig VV78X244652.14, whole genom... 44 5.1 1
(AM439707) Vitis vinifera contig VV78X277719.3, whole genome... 44 5.1 1
(AC215732) Populus trichocarpa clone POP039-L11, complete se... 44 5.1 1
(U97407) Caenorhabditis elegans cosmid C34G6, complete seque... 44 5.1 1
(AC113331) Homo sapiens chromosome 11, clone CTD-3048C22, co... 44 5.1 1
(AC131815) Rattus norvegicus clone CH230-51H15, WORKING DRAF... 44 5.1 1
(AC128501) Rattus norvegicus clone CH230-215N21, *** SEQUENC... 44 5.1 1
(AC121369) Rattus norvegicus clone CH230-133D12, *** SEQUENC... 44 5.1 1
(AC113330) Homo sapiens chromosome 11 clone RP11-1121N1 map ... 44 5.1 1
(AC112077) Rattus norvegicus clone CH230-142J7, *** SEQUENCI... 44 5.1 1
(CU914766) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.1 1
(CU694909) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.1 1
(CR388059) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 5.1 1
(CR384086) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 5.1 1
(AL590419) Human DNA sequence *** SEQUENCING CANCELLED *** f... 44 5.1 1
(AC217899) Zea mays chromosome 5 clone CH201-214C5; ZMMBBc02... 44 5.1 1
(AC204949) Zea mays chromosome 5 clone CH201-157L3; ZMMBBc01... 44 5.1 1
(AC176800) Strongylocentrotus purpuratus clone R3-1110K11, W... 44 5.1 1
(AC175718) Bos taurus clone CH240-383M4, WORKING DRAFT SEQUE... 44 5.1 1
(AC173945) Callicebus moloch clone LB5-27E14, WORKING DRAFT ... 44 5.1 1
(AC172392) Strongylocentrotus purpuratus clone R3-14N14, WOR... 44 5.1 1
(AC171429) Bos taurus clone CH240-254L22, WORKING DRAFT SEQU... 44 5.1 1
(AC167785) Glycine max clone gmw2-2o24, WORKING DRAFT SEQUEN... 44 5.1 1
(AC166873) Oryctolagus cuniculus clone LB1-248P14, WORKING D... 44 5.1 1
(AC166858) Oryctolagus cuniculus clone LB1-119P18, WORKING D... 44 5.1 1
(AC166018) Oryctolagus cuniculus clone LB1-246C1, WORKING DR... 44 5.1 1
(EJ835821) 1093017632486 Global-Ocean-Sampling_GS-30-02-01-1... 44 5.1 1
(DU912313) 328702 Tomato EcoRI BAC Library Solanum lycopersi... 44 5.1 1
(AJ854953) Brassica rapa subsp. pekinensis GSS, clone KBrH05... 44 5.1 1
(CZ966877) 165936 Tomato MboI BAC Library Solanum lycopersic... 44 5.1 1
(CZ949419) 262347 Tomato EcoRI BAC Library Solanum lycopersi... 44 5.1 1
(CT415624) Sus scrofa genomic clone CH242-301G20, genomic su... 44 5.1 1
(BZ449621) BONHV96TR BO_1.6_2_KB_tot Brassica oleracea genom... 44 5.1 1
(BH677868) BOMFD55TF BO_2_3_KB Brassica oleracea genomic clo... 44 5.1 1
(BH605742) BOGWA69TF BOGW Brassica oleracea genomic clone BO... 44 5.1 1
(AV374446) Mus musculus adult male cecum cDNA, RIKEN full-le... 44 5.1 1
(EB998902) 7619318 CE04 Caenorhabditis elegans cDNA clone 27... 44 5.1 1
(EB996954) 7619397 CE04 Caenorhabditis elegans cDNA clone 27... 44 5.1 1
(AV313230) Mus musculus adult male thymus cDNA, RIKEN full-l... 44 5.1 1
(AV192451) Caenorhabditis elegans cDNA clone:yk605e5 : 5' en... 44 5.1 1
(AV183185) Caenorhabditis elegans cDNA clone:yk647f12 : 3' e... 44 5.1 1
(AV180307) Caenorhabditis elegans cDNA clone:yk605e5 : 3' en... 44 5.1 1
(AV177398) Caenorhabditis elegans cDNA clone:yk528c10 : 3' e... 44 5.1 1
(AU217516) Caenorhabditis elegans cDNA clone:yk848c05 : 3' e... 44 5.1 1
(AU214259) Caenorhabditis elegans cDNA clone:yk811b01 : 3' e... 44 5.1 1
(AU212485) Caenorhabditis elegans cDNA clone:yk785f10 : 3' e... 44 5.1 1
(D66509) Caenorhabditis elegans cDNA clone yk101g7 : 3' end,... 44 5.1 1
(D65077) Caenorhabditis elegans cDNA clone yk130h1 : 3' end,... 44 5.1 1
(D32757) Caenorhabditis elegans cDNA clone yk21a8 : 3' end, ... 44 5.1 1
(D27414) Caenorhabditis elegans cDNA clone yk9c4 : 3' end, s... 44 5.1 1
(D27412) Caenorhabditis elegans cDNA clone yk12c3 : 3' end, ... 44 5.1 1
(CT588240) Danio rerio EST, clone ZF_mu_24n03 3'. 44 5.1 1
(CO823556) LM_GB5_003882 Locusta migratoria gregarious phase... 44 5.1 1
(CO823555) LM_GB5_003881 Locusta migratoria gregarious phase... 44 5.1 1
(C52213) Caenorhabditis elegans cDNA clone yk227b10 : 3' end... 44 5.1 1
(C30776) Caenorhabditis elegans cDNA clone yk258b3 : 3' end,... 44 5.1 1
(BW620221) Lotus japonicus cDNA, clone: LjFL1-sab-001-BC08, ... 44 5.1 1
(BW617458) Lotus japonicus cDNA, clone: LjFL1-069-CG01, 5' e... 44 5.1 1
(BW615381) Lotus japonicus cDNA, clone: LjFL1-060-DG10, 5' e... 44 5.1 1
(BW611546) Lotus japonicus cDNA, clone: LjFL1-045-BB06, 5' e... 44 5.1 1
>(AU267400) Dictyostelium discoideum vegetative cDNA clone:VSH409,
5' end single read.
Length = 437
Score = 539 bits (272), Expect(2) = 0.0
Identities = 272/272 (100%)
Strand = Plus / Plus
Query: 156 gtttagagttaactgaaactcaagattttggatcagtaaaatgtcctgatggaagtttat 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 gtttagagttaactgaaactcaagattttggatcagtaaaatgtcctgatggaagtttat 215
Query: 216 gtccaaattcaaatacatgttgttcagccagtgatggttcttatgcatgttgtccaactc 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gtccaaattcaaatacatgttgttcagccagtgatggttcttatgcatgttgtccaactc 275
Query: 276 caaatgcacaatgttgcagtgataagcaacactgttgtccttatcaattcacatgtggga 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 caaatgcacaatgttgcagtgataagcaacactgttgtccttatcaattcacatgtggga 335
Query: 336 atggaggaaatatttgtaaacctcaacaaggtcttcgattttctttcaatcgttaaacca 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 atggaggaaatatttgtaaacctcaacaaggtcttcgattttctttcaatcgttaaacca 395
Query: 396 aattaaaaaaacatttataaactttcaagtat 427
||||||||||||||||||||||||||||||||
Sbjct: 396 aattaaaaaaacatttataaactttcaagtat 427
Score = 165 bits (83), Expect(2) = 0.0
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1 gaattattcaaaaatatttatatttggaattatttcattaattttaatggcattgttttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaattattcaaaaatatttatatttggaattatttcattaattttaatggcattgttttc 60
Query: 61 atcaacagttgagagtgtttcat 83
|||||||||||||||||||||||
Sbjct: 61 atcaacagttgagagtgtttcat 83
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 538,202,232
Number of extensions: 35540202
Number of successful extensions: 3112442
Number of sequences better than 10.0: 147
Length of query: 539
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 516
Effective length of database: 93,106,754,628
Effective search space: 48043085388048
Effective search space used: 48043085388048
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 6.21 |
| Homology vs Protein |
Query= Contig-U06249-1 (Contig-U06249-1Q) /CSM_Contig/Contig-U06249-1Q.Seq.d
(539 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC072469_1(BC072469|pid:none) Rattus norvegicus granulin, mRNA (... 79 7e-14
BC105334_1(BC105334|pid:none) Bos taurus granulin, mRNA (cDNA cl... 78 1e-13
T25137(T25137) hypothetical protein T22H2.6a - Caenorhabditis el... 78 2e-13
AB167507_1(AB167507|pid:none) Mizuhopecten yessoensis mRNA for g... 75 1e-12
BT059209_1(BT059209|pid:none) Salmo salar clone ssal-rgf-532-249... 74 2e-12
(P28797) RecName: Full=Granulins; AltName: Full=Proepithelin; ... 74 2e-12
(P23785) RecName: Full=Granulins; Contains: RecName: Full=Acro... 74 2e-12
AX934341_1(AX934341|pid:none) Sequence 1 from Patent EP1356824. ... 74 2e-12
AK150717_1(AK150717|pid:none) Mus musculus bone marrow macrophag... 74 2e-12
AK018744_1(AK018744|pid:none) Mus musculus adult male kidney cDN... 74 2e-12
AK160022_1(AK160022|pid:none) Mus musculus osteoclast-like cell ... 74 2e-12
C38128(C38128;S32503;I49468;A46705) epithelin/granulin precursor... 74 2e-12
AK151007_1(AK151007|pid:none) Mus musculus bone marrow macrophag... 74 2e-12
AK150125_1(AK150125|pid:none) Mus musculus bone marrow macrophag... 74 2e-12
AK159557_1(AK159557|pid:none) Mus musculus osteoclast-like cell ... 74 2e-12
AK159397_1(AK159397|pid:none) Mus musculus osteoclast-like cell ... 74 2e-12
BT045135_1(BT045135|pid:none) Salmo salar clone ssal-rgf-513-057... 74 3e-12
AY642267_1(AY642267|pid:none) Sus scrofa granulin (GRN) gene, ex... 73 4e-12
CR860771_1(CR860771|pid:none) Pongo abelii mRNA; cDNA DKFZp459H0... 73 5e-12
FN357705_7(FN357705|pid:none) Schistosoma mansoni genome sequenc... 73 5e-12
AK222522_1(AK222522|pid:none) Homo sapiens mRNA for granulin var... 72 7e-12
AY289606_1(AY289606|pid:none) Danio rerio progranulin-b mRNA, co... 72 7e-12
BC096854_1(BC096854|pid:none) Danio rerio granulin b, mRNA (cDNA... 72 7e-12
(P28799) RecName: Full=Granulins; AltName: Full=Proepithelin; ... 72 7e-12
AK023348_1(AK023348|pid:none) Homo sapiens cDNA FLJ13286 fis, cl... 72 7e-12
BC000324_1(BC000324|pid:none) Homo sapiens granulin, mRNA (cDNA ... 72 9e-12
DQ004683_1(DQ004683|pid:none) Xenopus laevis granulin 2 mRNA, co... 72 9e-12
BC073022_1(BC073022|pid:none) Xenopus laevis hypothetical protei... 72 9e-12
AB169715_1(AB169715|pid:none) Macaca fascicularis brain cDNA, cl... 72 1e-11
BC108458_1(BC108458|pid:none) Xenopus laevis hypothetical protei... 70 3e-11
FN357705_6(FN357705|pid:none) Schistosoma mansoni genome sequenc... 69 6e-11
FN357705_5(FN357705|pid:none) Schistosoma mansoni genome sequenc... 69 6e-11
AF375477_1(AF375477|pid:none) Danio rerio granulin-A precursor, ... 69 8e-11
BC048224_1(BC048224|pid:none) Xenopus laevis granulin, mRNA (cDN... 69 8e-11
BC091093_1(BC091093|pid:none) Xenopus tropicalis GRN protein, mR... 67 2e-10
AY810079_1(AY810079|pid:none) Schistosoma japonicum SJCHGC09392 ... 65 8e-10
(P80930) RecName: Full=Antimicrobial peptide eNAP-1; Flags: Frag... 62 1e-08
AF273480_1(AF273480|pid:none) Danio rerio granulin 2 mRNA, compl... 60 4e-08
(P81015) RecName: Full=Granulin-3; &C46654(C46654;C40180) 58 2e-07
DQ369750_1(DQ369750|pid:none) Carassius auratus granulin mRNA, c... 57 4e-07
BC153543_1(BC153543|pid:none) Danio rerio granulin 1, mRNA (cDNA... 56 7e-07
AF273479_1(AF273479|pid:none) Danio rerio granulin 1 mRNA, compl... 56 7e-07
BC116498_1(BC116498|pid:none) Danio rerio zgc:136318, mRNA (cDNA... 55 9e-07
(P81013) RecName: Full=Granulin-1; &A46654(A46654;A40180) 55 1e-06
AF273481_1(AF273481|pid:none) Danio rerio hybrid granulin mRNA, ... 55 1e-06
EU350955_1(EU350955|pid:none) Manduca sexta granulin-like peptid... 54 2e-06
EF147908_1(EF147908|pid:none) Populus trichocarpa clone WS0125_O... 54 3e-06
FJ436341_1(FJ436341|pid:none) Opisthorchis viverrini granulin mR... 53 6e-06
EU973371_1(EU973371|pid:none) Zea mays clone 397658 unknown mRNA. 51 2e-05
BT071400_1(BT071400|pid:none) Picea sitchensis clone WS0287_F07 ... 51 2e-05
BT042091_1(BT042091|pid:none) Zea mays full-length cDNA clone ZM... 51 2e-05
S57776(S57776) cysteine proteinase (EC 3.4.22.-) - clove pink (f... 51 2e-05
AB331922_1(AB331922|pid:none) Brassica rapa var. perviridis BrCP... 50 3e-05
(P80059) RecName: Full=Pars intercerebralis major peptide D1; ... 50 3e-05
EF576540_1(EF576540|pid:none) Oryza sativa (indica cultivar-grou... 50 3e-05
AY251055_1(AY251055|pid:none) Anthurium andraeanum senescence-as... 50 3e-05
AB377534_1(AB377534|pid:none) Spinacia oleracea SoCP3-41 mRNA fo... 50 3e-05
(P25776) RecName: Full=Oryzain alpha chain; EC=3.4.22.-... 50 3e-05
AF454958_1(AF454958|pid:none) Brassica oleracea senescence-assoc... 50 3e-05
AL606692_8(AL606692|pid:none) Oryza sativa genomic DNA, chromoso... 50 3e-05
AK226753_1(AK226753|pid:none) Arabidopsis thaliana mRNA for papa... 50 4e-05
AM941122_1(AM941122|pid:none) Hordeum vulgare subsp. vulgare mRN... 50 4e-05
AF388175_1(AF388175|pid:none) Arabidopsis thaliana papain-like c... 50 4e-05
AC130601_2(AC130601|pid:none) Oryza sativa (japonica cultivar-gr... 49 6e-05
EF530146_1(EF530146|pid:none) Actinidia deliciosa cysteine prote... 49 8e-05
AC000132_24(AC000132|pid:none) Sequence of BAC F21M12 from Arabi... 49 8e-05
AK226498_1(AK226498|pid:none) Arabidopsis thaliana mRNA for cyst... 49 8e-05
(P43297) RecName: Full=Cysteine proteinase RD21a; Short... 49 8e-05
AY039606_1(AY039606|pid:none) Arabidopsis thaliana F2G19.31/F2G1... 49 8e-05
EF622020_1(EF622020|pid:none) Elaeis guineensis cysteine protein... 49 1e-04
AB267407_1(AB267407|pid:none) Triticum aestivum mRNA for tritica... 48 1e-04
EF147075_1(EF147075|pid:none) Populus trichocarpa clone WS01227_... 48 1e-04
EF530144_1(EF530144|pid:none) Actinidia deliciosa cysteine prote... 48 1e-04
EF145111_1(EF145111|pid:none) Populus trichocarpa clone WS01120_... 48 1e-04
AB098627_1(AB098627|pid:none) Daucus carota DcCysP4 mRNA for cys... 48 2e-04
AF019147_1(AF019147|pid:none) Zea mays cysteine proteinase Mir3 ... 48 2e-04
FB844668_1(FB844668|pid:none) Sequence 63941 from Patent WO20080... 48 2e-04
JC4848(JC4848) cysteine proteinase (EC 3.4.22.-) - Douglas fir ... 47 2e-04
AK229936_1(AK229936|pid:none) Arabidopsis thaliana mRNA for cyst... 47 2e-04
BT084384_1(BT084384|pid:none) Zea mays full-length cDNA clone ZM... 47 2e-04
EF084924_1(EF084924|pid:none) Picea sitchensis clone WS02718_H19... 47 2e-04
AF019146_1(AF019146|pid:none) Zea mays cysteine proteinase Mir2 ... 47 2e-04
EU964144_1(EU964144|pid:none) Zea mays clone 276186 cysteine pro... 47 2e-04
FB844656_1(FB844656|pid:none) Sequence 63929 from Patent WO20080... 47 2e-04
AB008267_6(AB008267|pid:none) Arabidopsis thaliana genomic DNA, ... 47 2e-04
AY973616_1(AY973616|pid:none) Manihot esculenta cysteine proteas... 47 3e-04
EU969590_1(EU969590|pid:none) Zea mays clone 332846 cysteine pro... 46 5e-04
EF622019_1(EF622019|pid:none) Elaeis guineensis cysteine protein... 46 5e-04
AY662995_1(AY662995|pid:none) Petunia x hybrida cysteine protein... 46 7e-04
S24602(S24602) cysteine proteinase tpp (EC 3.4.22.-) - garden pe... 46 7e-04
AF366556_1(AF366556|pid:none) Oryza sativa saline responsive OSS... 45 0.001
D90407_1(D90407|pid:none) Oryza sativa Japonica Group mRNA for o... 45 0.001
AP008210_2224(AP008210|pid:none) Oryza sativa (japonica cultivar... 45 0.001
AB098629_1(AB098629|pid:none) Daucus carota DcCysP6 mRNA for cys... 45 0.001
AB098631_1(AB098631|pid:none) Daucus carota DcCysP8 mRNA for cys... 45 0.001
AF454956_1(AF454956|pid:none) Brassica oleracea senescence-assoc... 45 0.002
AB177386_1(AB177386|pid:none) Dianthus caryophyllus DC-CP2 mRNA ... 45 0.002
EF530145_1(EF530145|pid:none) Actinidia deliciosa cysteine prote... 44 0.003
AY700587_1(AY700587|pid:none) Zingiber officinale cysteine prote... 43 0.004
EU573775_1(EU573775|pid:none) Mucuna pruriens mucunain mRNA, com... 42 0.008
AB369066_1(AB369066|pid:none) Triticum aestivum mRNA for tritica... 42 0.008
AK003998_1(AK003998|pid:none) Mus musculus 18-day embryo whole b... 42 0.013
AK003412_1(AK003412|pid:none) Mus musculus 18-day embryo whole b... 41 0.017
(Q7XR52) RecName: Full=Cysteine protease 1; EC=3.4.22.-... 41 0.017
AK010137_1(AK010137|pid:none) Mus musculus adult male tongue cDN... 41 0.017
FB844666_1(FB844666|pid:none) Sequence 63939 from Patent WO20080... 40 0.049
AF125955_11(AF125955|pid:none) Caenorhabditis elegans cosmid F46... 39 0.065
BT083851_1(BT083851|pid:none) Zea mays full-length cDNA clone ZM... 39 0.065
EU966324_1(EU966324|pid:none) Zea mays clone 293605 cysteine pro... 39 0.065
AB007985_1(AB007985|pid:none) Mesocricetus auratus MCS mRNA for ... 39 0.084
EU836311_1(EU836311|pid:none) Peromyscus aztecus hylocetes isola... 39 0.11
AB168857_1(AB168857|pid:none) Macaca fascicularis testis cDNA, c... 38 0.14
EU649699_1(EU649699|pid:none) Bombyx mori delta protein mRNA, pa... 38 0.19
AF182079_1(AF182079|pid:none) Matricaria chamomilla thiol protea... 38 0.19
CP000769_2725(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, c... 37 0.25
(P49901) RecName: Full=Sperm mitochondrial-associated cysteine-r... 37 0.32
X89960_1(X89960|pid:none) H.sapiens mRNA for mitochondrial capsu... 37 0.32
AY788097_1(AY788097|pid:none) Peromyscus maniculatus mitochondri... 37 0.42
EU973332_1(EU973332|pid:none) Zea mays clone 396882 keratin-asso... 37 0.42
AY788095_2(AY788095|pid:none) Sus scrofa mitochondrial associate... 37 0.42
FJ716810_1(FJ716810|pid:none) Piriformospora indica granulin-lik... 37 0.42
AF181567_1(AF181567|pid:none) Solanum chacoense cysteine proteas... 36 0.55
EU733641_1(EU733641|pid:none) Bothrops atrox batroxstatin-3 mRNA... 36 0.55
AF529180_1(AF529180|pid:none) Drosophila melanogaster extracellu... 36 0.55
AE014297_4403(AE014297|pid:none) Drosophila melanogaster chromos... 36 0.55
AF205357_1(AF205357|pid:none) Drosophila melanogaster extracellu... 36 0.55
EU836312_1(EU836312|pid:none) Peromyscus eremicus isolate PGSC18... 36 0.55
AY765220_1(AY765220|pid:none) Tetrahymena pyriformis GL metallot... 36 0.55
AF529179_1(AF529179|pid:none) Drosophila melanogaster extracellu... 36 0.55
(Q868Z9) RecName: Full=Papilin; Flags: Precursor; 36 0.55
AM920433_565(AM920433|pid:none) Penicillium chrysogenum Wisconsi... 36 0.55
EU975774_1(EU975774|pid:none) Zea mays clone 500142 hypothetical... 36 0.55
(Q01MB6) RecName: Full=Lectin; AltName: Full=Agglutinin; Contain... 36 0.71
BC147443_1(BC147443|pid:none) Mus musculus late cornified envelo... 36 0.71
AL662990_8(AL662990|pid:none) Oryza sativa genomic DNA, chromoso... 36 0.71
FJ039903_1(FJ039903|pid:none) Hordeum vulgare DEP1 (DEP1) mRNA, ... 36 0.71
AK003951_1(AK003951|pid:none) Mus musculus 18-day embryo whole b... 36 0.71
AK004290_1(AK004290|pid:none) Mus musculus 18-day embryo whole b... 36 0.71
(Q0JF21) RecName: Full=Lectin; AltName: Full=Agglutinin; Contain... 36 0.71
CR855052_1(CR855052|pid:none) Oryza sativa genomic DNA, chromoso... 36 0.71
AF140681_1(AF140681|pid:none) Oryza sativa subsp. indica lectin ... 36 0.71
T10081(T10081;A37199)sperm mitochondrial capsule selenoprotein -... 35 0.93
CR940353_318(CR940353|pid:none) Theileria annulata strain Ankara... 35 0.93
(O97388) RecName: Full=Metallothionein-1; Short=MT-1; C... 35 0.93
(P15265) RecName: Full=Sperm mitochondrial-associated cysteine-r... 35 0.93
S50911(S50911)metallothionein-2 - Tetrahymena pigmentosa 35 0.93
AK077172_1(AK077172|pid:none) Mus musculus adult male testis cDN... 35 0.93
EU836310_1(EU836310|pid:none) Peromyscus leucopus isolate PGSC16... 35 0.93
AK003705_1(AK003705|pid:none) Mus musculus 18-day embryo whole b... 35 0.93
AC116920_24(AC116920|pid:none) Dictyostelium discoideum chromoso... 35 1.2
Z69717_3(Z69717|pid:none) Caenorhabditis elegans Cosmid E01G6, c... 35 1.2
T20406(T20406)hypothetical protein E01G6.1 - Caenorhabditis eleg... 35 1.2
A87722(A87722)protein ZC123.1 [imported] - Caenorhabditis elegans 35 1.2
AF194818_1(AF194818|pid:none) Gallus gallus fibrillin-2 mRNA, pa... 35 1.2
EU420056_1(EU420056|pid:none) Tetrahymena pigmentosa strain HG2 ... 35 1.2
AK122555_1(AK122555|pid:none) Mus musculus mRNA for mKIAA1781 pr... 35 1.6
(Q80T91) RecName: Full=Multiple epidermal growth factor-like dom... 35 1.6
AP008215_740(AP008215|pid:none) Oryza sativa (japonica cultivar-... 35 1.6
AP005419_8(AP005419|pid:none) Oryza sativa Japonica Group genomi... 35 1.6
AK160406_1(AK160406|pid:none) Mus musculus adult male cerebellum... 35 1.6
U03272_1(U03272|pid:none) Human fibrillin-2 mRNA, complete cds. 35 1.6
AB209735_1(AB209735|pid:none) Homo sapiens mRNA for fibrillin 2 ... 35 1.6
AJ720125_1(AJ720125|pid:none) Gallus gallus mRNA for hypothetica... 35 1.6
A54105(A54105;S17063;S31101)fibrillin-2 precursor - human 35 1.6
FJ039902_1(FJ039902|pid:none) Triticum aestivum DEP1 (DEP1) mRNA... 35 1.6
FJ501956_1(FJ501956|pid:none) Oryza sativa Indica Group keratin ... 35 1.6
AK220196_1(AK220196|pid:none) Mus musculus mRNA for mKIAA4226 pr... 35 1.6
FJ554569_1(FJ554569|pid:none) Oryza sativa Japonica Group cultiv... 35 1.6
AF135060_1(AF135060|pid:none) Rattus norvegicus fibrillin-2 mRNA... 35 1.6
AJ299436_1(AJ299436|pid:none) Lumbricus rubellus mt2C gene for m... 34 2.1
AK010064_1(AK010064|pid:none) Mus musculus adult male tongue cDN... 34 2.1
(O13766) RecName: Full=Zinc metalloprotease mde10; EC=3... 34 2.1
CP001359_3295(CP001359|pid:none) Anaeromyxobacter dehalogenans 2... 34 2.1
EU480778_1(EU480778|pid:none) Caenorhabditis remanei strain PB24... 34 2.1
EU480770_1(EU480770|pid:none) Caenorhabditis remanei strain PB21... 34 2.1
EU480773_1(EU480773|pid:none) Caenorhabditis remanei strain PB21... 34 2.1
AC116920_25(AC116920|pid:none) Dictyostelium discoideum chromoso... 34 2.1
CP001131_3213(CP001131|pid:none) Anaeromyxobacter sp. K, complet... 34 2.1
EU480780_1(EU480780|pid:none) Caenorhabditis remanei strain PB25... 34 2.1
AK009424_1(AK009424|pid:none) Mus musculus adult male tongue cDN... 34 2.1
FN374147_1(FN374147|pid:none) Schistosoma mansoni genome sequenc... 34 2.7
AC116920_20(AC116920|pid:none) Dictyostelium discoideum chromoso... 34 2.7
(Q8T6B3) RecName: Full=Metallothionein-1; Short=MT-1; ... 34 2.7
CP001131_2828(CP001131|pid:none) Anaeromyxobacter sp. K, complet... 34 2.7
(Q61554) RecName: Full=Fibrillin-1; Flags: Precursor; &A55624(A... 34 2.7
AL110498_8(AL110498|pid:none) Caenorhabditis elegans YAC Y64G10A... 34 2.7
AF016439_2(AF016439|pid:none) Caenorhabditis elegans cosmid R02F... 34 2.7
(Q61555) RecName: Full=Fibrillin-2; Flags: Precursor; &A57278(A... 34 2.7
AX775807_1(AX775807|pid:none) Sequence 77 from Patent WO03048202. 34 2.7
T27283(T27283)hypothetical protein Y64G10A.f - Caenorhabditis el... 34 2.7
BC118057_1(BC118057|pid:none) Mus musculus delta-like 2 homolog ... 33 3.5
(P43174) RecName: Full=Pollen allergen Amb p 5a; AltName: Full=A... 33 3.5
T23573(T23573) hypothetical protein K10D3.4 - Caenorhabditis ele... 33 3.5
M33753_1(M33753|pid:none) D.melanogaster crumbs protein mRNA, co... 33 3.5
L24466_1(L24466|pid:none) Ambrosia psilostachya (clone A3) Amb p... 33 3.5
(P35555) RecName: Full=Fibrillin-1; Flags: Precursor; &L13923_1... 33 3.5
X63556_1(X63556|pid:none) H.sapiens mRNA for fibrillin. 33 3.5
(P10040) RecName: Full=Protein crumbs; AltName: Full=95F; Flags:... 33 3.5
(P02878) RecName: Full=Pollen allergen Amb a 5; AltName: Full=Al... 33 3.5
EU854566_1(EU854566|pid:none) Danio rerio fibrillin 4 (fbn4) mRN... 33 3.5
(Q5TA78) RecName: Full=Late cornified envelope protein 4A; AltNa... 33 3.5
AF007248_1(AF007248|pid:none) Mus musculus mutant fibrillin-1 (F... 33 4.6
CS272704_1(CS272704|pid:none) Sequence 21 from Patent WO20060129... 33 4.6
AB017499_1(AB017499|pid:none) Oryctolagus cuniculus LRP5 mRNA fo... 33 4.6
EF133884_1(EF133884|pid:none) Alexandrium fundyense strain GT-CA... 33 4.6
AK164949_1(AK164949|pid:none) Mus musculus 0 day neonate lung cD... 33 4.6
DQ103332_1(DQ103332|pid:none) Canis familiaris sperm mitochondri... 33 4.6
AJ628246_1(AJ628246|pid:none) Homo sapiens partial mRNA for kera... 33 4.6
(Q6L8H2) RecName: Full=Keratin-associated protein 5-3; AltName: ... 33 4.6
(P97677) RecName: Full=Delta-like protein 1; AltName: Full=Droso... 33 4.6
S15468(I51601;S15468) complement C3b/C4b inactivator (EC 3.4.21.... 33 4.6
(Q8WSW3) RecName: Full=Cadmium metallothionein; AltName: Full=MT... 33 4.6
AF135059_1(AF135059|pid:none) Rattus norvegicus fibrillin-1 mRNA... 33 4.6
AY788098_3(AY788098|pid:none) Canis familiaris mitochondrial ass... 33 4.6
DQ022377_1(DQ022377|pid:none) Danio rerio beta 4 integrin mRNA, ... 33 4.6
CP000251_2747(CP000251|pid:none) Anaeromyxobacter dehalogenans 2... 33 4.6
AL844547_6(AL844547|pid:none) Mouse DNA sequence from clone RP23... 33 4.6
FN357618_12(FN357618|pid:none) Schistosoma mansoni genome sequen... 33 4.6
FJ009119_1(FJ009119|pid:none) Papio anubis low density lipoprote... 33 6.1
AY452758_1(AY452758|pid:none) Drosophila pseudoobscura strain Me... 33 6.1
AM265551_1(AM265551|pid:none) Crassostrea gigas mt IV gene for m... 33 6.1
AF064548_1(AF064548|pid:none) Homo sapiens low-density lipoprote... 33 6.1
AC116963_25(AC116963|pid:none) Dictyostelium discoideum chromoso... 33 6.1
(O75197) RecName: Full=Low-density lipoprotein receptor-related ... 33 6.1
(P41951) RecName: Full=Prion-like-(Q/N-rich) domain-bearing prot... 33 6.1
(O75690) RecName: Full=Keratin-associated protein 5-8; AltName: ... 33 6.1
AF172322_1(AF172322|pid:none) Coturnix coturnix JAC (JAC) mRNA, ... 33 6.1
BC166786_1(BC166786|pid:none) Rattus norvegicus low density lipo... 33 6.1
AJ006692_1(AJ006692|pid:none) Homo sapiens UHS KerB gene. 33 6.1
AF374376_25(AF374376|pid:none) Oikopleura dioica clone BAC clone... 33 6.1
DQ917570_1(DQ917570|pid:none) Parhyale hawaiensis delta protein ... 33 6.1
BC166351_1(BC166351|pid:none) Xenopus tropicalis fibrillin 3, mR... 32 7.9
U40030_3(U40030|pid:none) Caenorhabditis elegans cosmid T13C2, c... 32 7.9
U40030_4(U40030|pid:none) Caenorhabditis elegans cosmid T13C2, c... 32 7.9
AF369477_1(AF369477|pid:none) Mus musculus strain 129P3/J lipopr... 32 7.9
(A2ARV4) RecName: Full=Low-density lipoprotein receptor-related ... 32 7.9
AF003521_1(AF003521|pid:none) Homo sapiens Jagged 2 mRNA, comple... 32 7.9
AF046862_1(AF046862|pid:none) Dendroides canadensis anti-freeze ... 32 7.9
AB472766_1(AB472766|pid:none) Physcomitrella patens subsp. paten... 32 7.9
(Q07954) RecName: Full=Prolow-density lipoprotein receptor-relat... 32 7.9
BC161739_1(BC161739|pid:none) Xenopus tropicalis dickkopf 3, mRN... 32 7.9
(A4K2Q7) RecName: Full=WAP four-disulfide core domain protein 5;... 32 7.9
AB209498_1(AB209498|pid:none) Homo sapiens mRNA for low density ... 32 7.9
AF179417_1(AF179417|pid:none) Dendroides canadensis antifreeze p... 32 7.9
AK297003_1(AK297003|pid:none) Homo sapiens cDNA FLJ55713 complet... 32 7.9
AJ005822_1(AJ005822|pid:none) Lumbricus rubellus mRNA for metall... 32 7.9
AM920437_303(AM920437|pid:none) Penicillium chrysogenum Wisconsi... 32 7.9
AL844507_267(AL844507|pid:none) Plasmodium falciparum 3D7 chromo... 32 7.9
(P98157) RecName: Full=Low-density lipoprotein receptor-related ... 32 7.9
A30363(A30363)glycoprotein GP330, renal - rat (fragments) 32 7.9
AF029778_1(AF029778|pid:none) Homo sapiens Jagged2 (JAG2) mRNA, ... 32 7.9
X55077_1(X55077|pid:none) H.sapiens mRNA fragment for alpha-2 ma... 32 7.9
(Q91ZX7) RecName: Full=Prolow-density lipoprotein receptor-relat... 32 7.9
AB095016_1(AB095016|pid:none) Cynops pyrrhogaster Notch-1 mRNA f... 32 7.9
S25111(S25111;S32554) alpha-2-macroglobulin receptor precursor -... 32 7.9
(P98158) RecName: Full=Low-density lipoprotein receptor-related ... 32 7.9
AF029779_1(AF029779|pid:none) Homo sapiens hJAG2.del-E6 (JAG2) m... 32 7.9
AF020201_1(AF020201|pid:none) Homo sapiens Jagged 2 mRNA, comple... 32 7.9
BX890618_1(BX890618|pid:none) Zebrafish DNA sequence from clone ... 32 7.9
(Q94494) RecName: Full=Protein psiH; Flags: Precursor; &U67940_... 32 7.9
BX088690_1(BX088690|pid:none) Zebrafish DNA sequence from clone ... 32 7.9
Y14330_1(Y14330|pid:none) Homo sapiens partial mRNA for jagged2 ... 32 7.9
CP001231_19(CP001231|pid:none) Persephonella marina EX-H1 plasmi... 32 7.9
>BC072469_1(BC072469|pid:none) Rattus norvegicus granulin, mRNA
(cDNA clone MGC:91745 IMAGE:7098196), complete cds.
Length = 511
Score = 79.0 bits (193), Expect = 7e-14
Identities = 33/72 (45%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +2
Query: 155 SLELTETQDF-GSVKCPDGSLCPNSNTCCSASDGSYACCPTPNAQCCSDKQHCCPYQFTC 331
SL L + Q V C D S CP++NTCC S G + CCP P A CC D+QHCCP +TC
Sbjct: 349 SLSLPDPQILKNDVPCDDFSSCPSNNTCCRLSSGDWGCCPIPEAVCCEDRQHCCPAGYTC 408
Query: 332 GNGGNICKPQQG 367
C+ G
Sbjct: 409 NVKARTCEKDAG 420
Score = 70.1 bits (170), Expect = 3e-11
Identities = 26/50 (52%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Frame = +2
Query: 185 GSVKCPDGSL-CPNSNTCCSASDGSYACCPTPNAQCCSDKQHCCPYQFTC 331
G+V+CP CP+S TCC DGS+ CCP P A CC D+ HCCP+ +C
Sbjct: 121 GAVQCPGSQFECPDSATCCIMIDGSWGCCPMPQASCCEDRVHCCPHGASC 170
Score = 69.3 bits (168), Expect = 6e-11
Identities = 27/49 (55%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +2
Query: 188 SVKCPDGSL-CPNSNTCCSASDGSYACCPTPNAQCCSDKQHCCPYQFTC 331
SV CPD CP+ +TCC G Y CCP PNA CCSD HCCP C
Sbjct: 204 SVVCPDAKTQCPDDSTCCELPTGKYGCCPMPNAICCSDHLHCCPQDTVC 252
Score = 68.6 bits (166), Expect = 1e-10
Identities = 27/66 (40%), Positives = 36/66 (54%)
Frame = +2
Query: 155 SLELTETQDFGSVKCPDGSLCPNSNTCCSASDGSYACCPTPNAQCCSDKQHCCPYQFTCG 334
S++LT G+V+C G C ++ +CC S G +ACCP CC D +HCCP F C
Sbjct: 425 SMDLTFGSKVGNVECGAGHFCHDNQSCCKDSQGGWACCPYVKGVCCRDGRHCCPIGFHCS 484
Query: 335 NGGNIC 352
G C
Sbjct: 485 AKGTKC 490
Score = 59.3 bits (142), Expect = 6e-08
Identities = 23/55 (41%), Positives = 28/55 (50%)
Frame = +2
Query: 191 VKCPDGSLCPNSNTCCSASDGSYACCPTPNAQCCSDKQHCCPYQFTCGNGGNICK 355
VKC CP+ TCC + G++ CCP A CC D HCCP F C C+
Sbjct: 280 VKCDLEVSCPDGYTCCRLNTGAWGCCPFTKAVCCEDHIHCCPAGFQCHTETGTCE 334
Score = 48.5 bits (114), Expect = 1e-04
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = +2
Query: 215 CPNSNTCCSASDGSYACCPTPNAQCCSDKQHCCPYQFTCGNGGNIC 352
CP+ +C G+ +CCP C D QHCCP F C G C
Sbjct: 67 CPDGYSCLLTVSGTSSCCPFSEGVSCDDGQHCCPRGFHCSVDGKSC 112
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 527,873,086
Number of extensions: 9266464
Number of successful extensions: 36439
Number of sequences better than 10.0: 263
Number of HSP's gapped: 35807
Number of HSP's successfully gapped: 534
Length of query: 179
Length of database: 1,040,966,779
Length adjustment: 120
Effective length of query: 59
Effective length of database: 656,452,579
Effective search space: 38730702161
Effective search space used: 38730702161
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
|
| PSORT |
|
| VS (DIR, S) |
2 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |