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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U06240-1
Contig ID Contig-U06240-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U06240-1 (Contig-U06240-1Q) /CSM_Contig/Contig-U06240-1Q.Seq.d
GCAAGGAACAATGACAGTTGATAGTGTAGGTCTAATGGAATTTGTTTTCA
AAAAATCTGGTATAATTTTAGAAAATTACAAAAATGTTGCATCAAAATTT
AGAAGATTTTTTATAATAGATCTTCTAGGAGATGACGAAGATAGAATTAA
TGAATATAAAATCATGATTCAGTCATCATATAACTTATTGTATTTTGATA
TAGAGGGCATTAGACGTTATTATATTGGAGATGATGATTATCAACCACAA
TTCAACTCTGATATAGTGAATATGAATCATCTCTCAATAGTTTTAAGAGT
TTATCCACTTCAGACAATAGTAGACAATTATAAGAAAACTGCTCTCTGAA
TCAAAGATTCATATCATTTCAATTTAATAAAAAAAGCAAAAAAAATTAAA
AAAAATTAAAATTAAAATAAAA
Gap no gap
Contig length 422
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 1
Link to clone list U06240
List of clone(s) 

est1=VSA322E,1,423
Translated Amino Acid sequence 
QGTMTVDSVGLMEFVFKKSGIILENYKNVASKFRRFFIIDLLGDDEDRINEYKIMIQSSY
NLLYFDIEGIRRYYIGDDDYQPQFNSDIVNMNHLSIVLRVYPLQTIVDNYKKTAL*ikds
yhfnlikkakkikkn*n*nk
Translated Amino Acid sequence (All Frames) 
Frame A:
arnnds**crsngicfqkiwynfrklqkcciki*kifynrssrr*rr*n**i*nhdsvii
*livf*yrgh*tllywr**lsttiql*yseyesslnsfkslstsdnsrql*encslnqrf
isfqfnkkskkn*kklklk*


Frame B:
QGTMTVDSVGLMEFVFKKSGIILENYKNVASKFRRFFIIDLLGDDEDRINEYKIMIQSSY
NLLYFDIEGIRRYYIGDDDYQPQFNSDIVNMNHLSIVLRVYPLQTIVDNYKKTAL*ikds
yhfnlikkakkikkn*n*nk


Frame C:
keq*qliv*v*wnlfsknlv*f*kitkmlhqnledfl**if*emtkielmniks*fshhi
tycili*raldviilemmiinhnstli**i*iisq*f*efihfrq**tiirkllseskih
iisi**kkqkklkkikikik
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06240-1 (Contig-U06240-1Q)
/CSM_Contig/Contig-U06240-1Q.Seq.d
         (422 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06240-1 (Contig-U06240-1Q) /CSM_Contig/Conti...   749  0.0
Contig-U12047-1 (Contig-U12047-1Q) /CSM_Contig/Conti...    36  0.029
Contig-U11288-1 (Contig-U11288-1Q) /CSM_Contig/Conti...    36  0.029
Contig-U05088-1 (Contig-U05088-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U12406-1 (Contig-U12406-1Q) /CSM_Contig/Conti...    32  0.45
Contig-U12038-1 (Contig-U12038-1Q) /CSM_Contig/Conti...    32  0.45
Contig-U11453-1 (Contig-U11453-1Q) /CSM_Contig/Conti...    32  0.45
Contig-U11452-1 (Contig-U11452-1Q) /CSM_Contig/Conti...    32  0.45
Contig-U11022-1 (Contig-U11022-1Q) /CSM_Contig/Conti...    32  0.45
Contig-U11213-1 (Contig-U11213-1Q) /CSM_Contig/Conti...    28  7.1

>Contig-U06240-1 (Contig-U06240-1Q) /CSM_Contig/Contig-U06240-1Q.Seq.d
          Length = 422

 Score =  749 bits (378), Expect = 0.0
 Identities = 378/378 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaaggaacaatgacagttgatagtgtaggtctaatggaatttgttttcaaaaaatctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gcaaggaacaatgacagttgatagtgtaggtctaatggaatttgttttcaaaaaatctgg 60

                                                                       
Query: 61  tataattttagaaaattacaaaaatgttgcatcaaaatttagaagattttttataataga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tataattttagaaaattacaaaaatgttgcatcaaaatttagaagattttttataataga 120

                                                                       
Query: 121 tcttctaggagatgacgaagatagaattaatgaatataaaatcatgattcagtcatcata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcttctaggagatgacgaagatagaattaatgaatataaaatcatgattcagtcatcata 180

                                                                       
Query: 181 taacttattgtattttgatatagagggcattagacgttattatattggagatgatgatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taacttattgtattttgatatagagggcattagacgttattatattggagatgatgatta 240

                                                                       
Query: 241 tcaaccacaattcaactctgatatagtgaatatgaatcatctctcaatagttttaagagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcaaccacaattcaactctgatatagtgaatatgaatcatctctcaatagttttaagagt 300

                                                                       
Query: 301 ttatccacttcagacaatagtagacaattataagaaaactgctctctgaatcaaagattc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttatccacttcagacaatagtagacaattataagaaaactgctctctgaatcaaagattc 360

                             
Query: 361 atatcatttcaatttaat 378
           ||||||||||||||||||
Sbjct: 361 atatcatttcaatttaat 378


>Contig-U12047-1 (Contig-U12047-1Q) /CSM_Contig/Contig-U12047-1Q.Seq.d
          Length = 1228

 Score = 36.2 bits (18), Expect = 0.029
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 146 attaatgaatataaaatc 163
           ||||||||||||||||||
Sbjct: 914 attaatgaatataaaatc 931


 Score = 28.2 bits (14), Expect = 7.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 187 attgtattttgata 200
           ||||||||||||||
Sbjct: 696 attgtattttgata 683


>Contig-U11288-1 (Contig-U11288-1Q) /CSM_Contig/Contig-U11288-1Q.Seq.d
          Length = 3111

 Score = 36.2 bits (18), Expect = 0.029
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 63   taattttagaaaattacaaaaa 84
            |||||||| |||||||||||||
Sbjct: 2992 taattttaaaaaattacaaaaa 3013


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5002
Number of Sequences: 6905
Number of extensions: 5002
Number of successful extensions: 495
Number of sequences better than 10.0: 146
length of query: 422
length of database: 5,674,871
effective HSP length: 16
effective length of query: 406
effective length of database: 5,564,391
effective search space: 2259142746
effective search space used: 2259142746
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11. 7
Homology vs DNA 
Query= Contig-U06240-1 (Contig-U06240-1Q) /CSM_Contig/Contig-U06240-1Q.Seq.d
         (422 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU261420) Dictyostelium discoideum vegetative cDNA clone:VS...   749   0.0    1
(AF466306) Dictyostelium discoideum ABC transporter AbcB3 (a...    48   0.019  2
(DH104391) Oryzias latipes Fosmid clone:GOLWFno352_e02, forw...    50   0.064  1
(AC148171) Medicago truncatula clone mth2-30a2, complete seq...    38   0.12   4
(AC005140) Plasmodium falciparum chromosome 12 clone 3D7, **...    34   0.14   7
(AE014829) Plasmodium falciparum 3D7 chromosome 10 section 1...    34   0.41   6
(AC174170) Strongylocentrotus purpuratus clone R3-30I5, WORK...    32   0.54   2
(AC179743) Strongylocentrotus purpuratus clone R3-1018G22, W...    32   0.55   2
(AC181547) Strongylocentrotus purpuratus clone R3-1109O21, W...    32   0.55   2
(DX502475) Cpl25042 Papaya Genomic DNA BAC Library Carica pa...    34   0.71   2
(AC098631) Rattus norvegicus clone CH230-83M24, WORKING DRAF...    46   0.99   1
(AC218628) Bos taurus clone CH240-298P22, WORKING DRAFT SEQU...    46   0.99   1
(ER481757) 1093015267202 Global-Ocean-Sampling_GS-35-01-01-1...    46   0.99   1
(EK251341) 1095460281486 Global-Ocean-Sampling_GS-31-01-01-1...    46   0.99   1
(EJ842825) 1093017841816 Global-Ocean-Sampling_GS-30-02-01-1...    46   0.99   1
(EJ124337) 1092343387182 Global-Ocean-Sampling_GS-27-01-01-1...    46   0.99   1
(DH821687) Rattus norvegicus DNA, BAC clone: RNB1-425M05, 5'...    46   0.99   1
(CP000814) Campylobacter jejuni subsp. jejuni 81116, complet...    40   1.0    10
(EI836877) POTGM42TR Solanum tuberosum RHPOTKEY BAC ends Sol...    40   1.5    2
(DQ441439) Variola virus strain Somalia 1977 (V77-1605), com...    40   1.8    4
(DQ441438) Variola virus strain Somalia 1977 (V77-1252), com...    40   1.8    4
(DQ437584) Variola virus strain Germany 1958 Heidelberg, com...    40   1.8    4
(DQ441446) Variola virus strain United Kingdom 1947 Higgins ...    40   1.8    4
(DQ441442) Variola virus strain Sumatra 1970 V70-228, comple...    40   1.8    4
(DQ437591) Variola virus strain Sumatra 1970 V70-222, comple...    40   1.8    4
(X69198) Variola virus DNA complete genome.                        40   1.8    4
(DQ437588) Variola virus strain Nepal 1973, complete genome.       40   1.8    4
(DQ441444) Variola virus strain United Kingdom 1946 Harvey, ...    40   1.8    4
(DQ441443) Variola virus strain Tanzania 1965 kembula, compl...    40   1.8    4
(DQ437587) Variola virus strain Iran 1972 2602 Tabriz, compl...    40   1.8    4
(DQ441448) Variola virus strain Yugoslavia 1972 V72-164, com...    40   1.8    4
(DQ441433) Variola virus strain Kuwait 1967 (K1629), complet...    40   1.8    4
(DQ437592) Variola virus strain Syria 1972 V72-199, complete...    40   1.8    4
(DQ437580) Variola virus strain Afghanistan 1970 Variolator ...    40   1.8    4
(DQ437589) Variola virus strain Pakistan 1969 (Rafig Lahore)...    40   1.8    4
(DQ441418) Variola virus strain Botswana 1973 (v73-225), com...    40   1.8    4
(DQ441436) Variola virus strain South Africa 1965 (103 T'vaa...    40   1.8    4
(DQ441417) Variola virus strain Botswana 1972 (v72-143), com...    40   1.8    4
(DQ437581) Variola virus strain Bangladesh 1975 v75-550 Banu...    40   1.8    4
(DQ441435) Variola virus strain South Africa 1965 (102 Natal...    40   1.8    4
(DQ441445) Variola virus strain United Kingdom 1946 Hinden (...    40   1.8    4
(L22579) Variola major virus (strain Bangladesh-1975) comple...    40   1.8    4
(DQ441427) Variola virus strain India 1953 (Kali-Muthu-M50 M...    40   1.8    4
(DQ437586) Variola virus strain India 1964 7125 Vellore, com...    40   1.8    4
(DQ437590) Variola virus strain Somalia 1977, complete genome.     40   1.8    4
(DQ441440) Variola virus strain Sudan 1947 (Juba), complete ...    40   1.8    4
(DQ441422) Variola virus strain Bangladesh 1974 (Solaiman), ...    40   1.8    4
(DQ441421) Variola virus strain Bangladesh 1974 (Shahzaman),...    40   1.8    4
(DQ441420) Variola virus strain Bangladesh 1974 (nur islam),...    40   1.8    4
(DQ441432) Variola virus strain Korea 1947 (Lee, Masterseed)...    40   1.9    4
(DQ441441) Variola virus strain Sudan 1947 (Rumbec), complet...    40   1.9    4
(DQ437583) Variola virus strain Congo 1970, complete genome.       40   1.9    4
(DQ441425) Variola virus strain Ethiopia 1972 (Eth17 R14-1X-...    40   1.9    4
(DQ441424) Variola virus strain Ethiopia 1972 (Eth16 R14-1X-...    40   1.9    4
(DQ441423) Variola virus strain Congo 9 1970 (v74-227 Gispen...    40   1.9    4
(DQ437582) Variola virus strain China Horn 1948, complete ge...    40   1.9    4
(DQ437585) Variola virus strain India 1964 7124 Vellore, com...    40   1.9    4
(DQ441426) Variola virus strain Guinea 1969 (005), complete ...    40   1.9    4
(DQ441434) Variola virus strain Niger 1969 (001, importation...    40   1.9    4
(Y16780) variola minor virus complete genome.                      40   1.9    4
(DQ441437) Variola virus strain Sierra Leone 1969 (V68-258),...    40   1.9    4
(DQ441416) Variola virus strain Benin, Dahomey 1968 (v68-59)...    40   1.9    4
(DQ441419) Variola virus strain Brazil 1966 (v66-39 Sao Paul...    40   1.9    4
(DQ441447) Variola virus strain United Kingdom 1952 Butler, ...    40   1.9    4
(BX936433) Zebrafish DNA sequence from clone DKEY-117A16 in ...    42   2.1    2
(CU019575) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   2.1    3
(ET851526) CHO_OF375xf04r1.ab1 CHO_OF Nicotiana tabacum geno...    32   2.6    2
(AC090052) Homo sapiens 12 BAC RP11-295G12 (Roswell Park Can...    40   3.1    2
(ET725225) CHO_OF136xg13r1.ab1 CHO_OF Nicotiana tabacum geno...    40   3.1    2
(AC224577) Bos taurus clone CH240-481F14, WORKING DRAFT SEQU...    36   3.2    4
(AM840343) Nicotiana tabacum EST, clone nt005080024.               40   3.2    2
(AC136947) Homo sapiens chromosome 16 clone RP11-454L14, WOR...    40   3.3    2
(CZ753441) OC__Ba0104D10.r OC__Ba Oryza coarctata genomic cl...    40   3.3    2
(CT007903) Equus caballus GSS, BAC clone CH241-106O23, SP6 e...    34   3.6    3
(CU681846) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   3.6    3
(AE014851) Plasmodium falciparum 3D7 chromosome 12, section ...    34   3.8    6
(ER284211) 1092343532313 Global-Ocean-Sampling_GS-34-01-01-1...    40   3.9    2
(BV261570) S235P6177RA7.T0 ItalianGreyhound Canis familiaris...    44   3.9    1
(AY227544) Petinomys setosus isolate Pse1 12S ribosomal RNA ...    44   3.9    1
(EF144571) Populus trichocarpa clone WS01111_B04 unknown mRNA.     44   3.9    1
(AP008214) Oryza sativa (japonica cultivar-group) genomic DN...    44   3.9    1
(AP003876) Oryza sativa Japonica Group genomic DNA, chromoso...    44   3.9    1
(AM481940) Vitis vinifera contig VV79X005036.1, whole genome...    44   3.9    1
(AM449715) Vitis vinifera contig VV78X137680.3, whole genome...    44   3.9    1
(AK070704) Oryza sativa Japonica Group cDNA clone:J023056N10...    44   3.9    1
(EA689087) Sequence 67966 from patent US 7365185.                  44   3.9    1
(AC079919) Homo sapiens BAC clone RP11-291N5 from 4, complet...    44   3.9    1
(AC161550) Bos taurus clone CH240-105B18, WORKING DRAFT SEQU...    44   3.9    1
(AC223217) Bos taurus clone CH240-425L10, WORKING DRAFT SEQU...    44   3.9    1
(AC222399) Bos taurus clone CH240-417F22, WORKING DRAFT SEQU...    44   3.9    1
(AC220296) Bos taurus clone CH240-368P20, WORKING DRAFT SEQU...    44   3.9    1
(AC212615) Solanum lycopersicum chromosome 7 clone C07HBa004...    44   3.9    1
(AC182308) Bos taurus clone CH240-343F14, WORKING DRAFT SEQU...    44   3.9    1
(AC175176) Bos taurus clone CH240-124N18, WORKING DRAFT SEQU...    44   3.9    1
(AC172440) Bos taurus clone CH240-527M24, WORKING DRAFT SEQU...    44   3.9    1
(AC169098) Bos taurus clone CH240-226H22, WORKING DRAFT SEQU...    44   3.9    1
(AC166296) Bos taurus clone CH240-43M1, WORKING DRAFT SEQUEN...    44   3.9    1
(AC165672) Bos taurus clone CH240-167I16, WORKING DRAFT SEQU...    44   3.9    1
(AC164273) Bos taurus clone CH240-134A5, *** SEQUENCING IN P...    44   3.9    1
(AC163563) Bos taurus clone CH240-135L9, *** SEQUENCING IN P...    44   3.9    1

>(AU261420) Dictyostelium discoideum vegetative cDNA clone:VSA322,
           3' end single read.
          Length = 423

 Score =  749 bits (378), Expect = 0.0
 Identities = 378/378 (100%)
 Strand = Plus / Plus


Query: 1   gcaaggaacaatgacagttgatagtgtaggtctaatggaatttgttttcaaaaaatctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gcaaggaacaatgacagttgatagtgtaggtctaatggaatttgttttcaaaaaatctgg 60


Query: 61  tataattttagaaaattacaaaaatgttgcatcaaaatttagaagattttttataataga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tataattttagaaaattacaaaaatgttgcatcaaaatttagaagattttttataataga 120


Query: 121 tcttctaggagatgacgaagatagaattaatgaatataaaatcatgattcagtcatcata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcttctaggagatgacgaagatagaattaatgaatataaaatcatgattcagtcatcata 180


Query: 181 taacttattgtattttgatatagagggcattagacgttattatattggagatgatgatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taacttattgtattttgatatagagggcattagacgttattatattggagatgatgatta 240


Query: 241 tcaaccacaattcaactctgatatagtgaatatgaatcatctctcaatagttttaagagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcaaccacaattcaactctgatatagtgaatatgaatcatctctcaatagttttaagagt 300


Query: 301 ttatccacttcagacaatagtagacaattataagaaaactgctctctgaatcaaagattc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttatccacttcagacaatagtagacaattataagaaaactgctctctgaatcaaagattc 360


Query: 361 atatcatttcaatttaat 378
           ||||||||||||||||||
Sbjct: 361 atatcatttcaatttaat 378

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 500,499,541
Number of extensions: 30444894
Number of successful extensions: 2647313
Number of sequences better than 10.0: 180
Length of query: 422
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 399
Effective length of database: 93,106,754,628
Effective search space: 37149595096572
Effective search space used: 37149595096572
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 6.21
Homology vs Protein 
Query= Contig-U06240-1 (Contig-U06240-1Q) /CSM_Contig/Contig-U06240-1Q.Seq.d
         (422 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU848493_1(EU848493|pid:none) Clostridium perfringens A strain C...    35   0.61
CP000013_625(CP000013|pid:none) Borrelia garinii PBi, complete g...    33   4.0
AJ271970_1(AJ271970|pid:none) Staphylococcus aureus transposon T...    32   6.8
AB262081_1(AB262081|pid:none) Clostridium perfringens gene for T...    32   6.8
AE016795_1832(AE016795|pid:none) Vibrio vulnificus CMCP6 chromos...    32   8.9

>EU848493_1(EU848493|pid:none) Clostridium perfringens A strain CP4
            TpeL (tpeL) gene, complete cds.
          Length = 1779

 Score = 35.4 bits (80), Expect = 0.61
 Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 19/135 (14%)
 Frame = +2

Query: 23   SVGLMEFVFKKSGIILENYKNVASKFRRFFIIDLLGDDEDRINEYK----IMIQSSYNLL 190
            S+  + + +K +G  LEN+  V S     FI  L   D++ I +YK    +   + +N+
Sbjct: 1437 SIKSIPYFYKNNG--LENFIGVFSIKNNEFIYMLKDGDKNEIYKYKDNNLVCSFNLFNIS 1494

Query: 191  YFDI---------EGIRRYYIGDDDYQPQFNSDIVNMNHLSIVL------RVYPLQTIVD 325
            Y DI         +GI    I + +Y+ +F  ++++ N + I+        +    TI+D
Sbjct: 1495 YVDIISNGDKNYLKGIWNTSINNSEYKIEFLVELIDQNTIEIIKLNLSDELIKSFLTILD 1554

Query: 326  NYKKTAL*IKDSYHF 370
            N +   + I   Y F
Sbjct: 1555 NLENLDVKISTIYDF 1569

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 471,490,156
Number of extensions: 7356840
Number of successful extensions: 13918
Number of sequences better than 10.0: 5
Number of HSP's gapped: 13911
Number of HSP's successfully gapped: 5
Length of query: 140
Length of database: 1,040,966,779
Length adjustment: 104
Effective length of query: 36
Effective length of database: 707,721,139
Effective search space: 25477961004
Effective search space used: 25477961004
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)
PSORT 

 psg: 0.75  gvh: 0.29  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for Contig-U06240-1 is cyt
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0