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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U06236-1
Contig ID Contig-U06236-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U06236-1 (Contig-U06236-1Q) /CSM_Contig/Contig-U06236-1Q.Seq.d
CCCCCCCTCGAGGTCGACCCCGCGTCCGGCATTCAACACGTTCAAAATAA
ATCACTCATTACACTCGCCCTTGAAAATCTCAAACCCATTCAAAGGTGAC
CCAACCGCTGTTTTCATCAACTATGCCAGCGTTTTCGTTGTTTTTTATGG
TTTAAAGAATTTCATCGTCCCACATCACCCACATCAAGATGTTATTTACC
CATACATGAAATCAAAAAGAAGAACTTTAGCTTTTATGTTTGAAAAACAA
TAAAATAATAATAATAATATTAGATCATTAAAAAAAAAAAAAAAAAAAAA
AAATAGTTTCTTACGTTTAAAAAAAATTTTTTTTTTTATATATATATTTT
TTTTTTTTTCTCAAAAAATAAAATGATCACCAATAATAATAATACTTTAA
CAAAAAAAAAAAAAATAAAAAATAAAAAATAAAATGTAAT
Gap no gap
Contig length 440
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 4177243
End point 4176831
Strand (PLUS/MINUS) MINUS
Number of clones 13
Number of EST 20
Link to clone list U06236
List of clone(s) 

est1=VSD408F,1,288
est2=VSF547F,2,288
est3=VSF547Z,2,122
est4=VSH603Z,2,218
est5=VSF577F,5,288
est6=VSF720F,10,369
est7=VSE378E,13,279
est8=VSF458F,13,288
est9=VSF458Z,13,157
est10=VSH604F,14,288
est11=VSH556E,15,176
est12=VSF577Z,18,165
est13=VSF720Z,18,202
est14=VSD145F,19,372
est15=VSD145Z,19,155
est16=VSI742Z,20,174
est17=VSI742F,21,370
est18=VSD408Z,29,202
est19=VSF726F,66,288
est20=VSA304Z,253,441
Translated Amino Acid sequence 
PPSRSTPRPAFNTFKINHSLHSPLKISNPFKGDPTAVFINYASVFVVFYGLKNFIVPHHP
HQDVIYPYMKSKRRTLAFMFEKQ*nnnnnirslkkkkkkknsflrlkkifffiyiffffs
qkik*spiiiil*qkkkk*kiknkm*
Translated Amino Acid sequence (All Frames) 
Frame A:
pplevdpasgiqhvqnkslitlalenlkpiqr*pnrcfhqlcqrfrcflwfkefhrptsp
tsrcylpiheikkknfsfyv*ktik****y*iikkkkkkkk*fltfkknfffyiyiffff
sknkmitnnnntltkkkkiknkk*nv


Frame B:
PPSRSTPRPAFNTFKINHSLHSPLKISNPFKGDPTAVFINYASVFVVFYGLKNFIVPHHP
HQDVIYPYMKSKRRTLAFMFEKQ*nnnnnirslkkkkkkknsflrlkkifffiyiffffs
qkik*spiiiil*qkkkk*kiknkm*


Frame C:
pprgrprvrhstrsk*ithytrp*ksqthskvtqplfsstmpafslffmv*rissshith
ikmlftht*nqkeel*llclknnkiiiiildh*kkkkkkkivsyv*kkffflyiyffffl
kk*ndhq***yfnkkkknkk*kikcn
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06236-1 (Contig-U06236-1Q)
/CSM_Contig/Contig-U06236-1Q.Seq.d
         (440 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06236-1 (Contig-U06236-1Q) /CSM_Contig/Conti...   539  e-154
Contig-U09050-1 (Contig-U09050-1Q) /CSM_Contig/Conti...    50  2e-06
Contig-U14898-1 (Contig-U14898-1Q) /CSM_Contig/Conti...    46  3e-05
Contig-U06893-1 (Contig-U06893-1Q) /CSM_Contig/Conti...    46  3e-05
Contig-U05639-1 (Contig-U05639-1Q) /CSM_Contig/Conti...    46  3e-05
Contig-U14611-1 (Contig-U14611-1Q) /CSM_Contig/Conti...    44  1e-04
Contig-U12446-1 (Contig-U12446-1Q) /CSM_Contig/Conti...    44  1e-04
Contig-U12219-1 (Contig-U12219-1Q) /CSM_Contig/Conti...    44  1e-04
Contig-U10352-1 (Contig-U10352-1Q) /CSM_Contig/Conti...    44  1e-04
Contig-U07109-1 (Contig-U07109-1Q) /CSM_Contig/Conti...    44  1e-04

>Contig-U06236-1 (Contig-U06236-1Q) /CSM_Contig/Contig-U06236-1Q.Seq.d
          Length = 440

 Score =  539 bits (272), Expect = e-154
 Identities = 272/272 (100%)
 Strand = Plus / Plus

                                                                       
Query: 8   tcgaggtcgaccccgcgtccggcattcaacacgttcaaaataaatcactcattacactcg 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   tcgaggtcgaccccgcgtccggcattcaacacgttcaaaataaatcactcattacactcg 67

                                                                       
Query: 68  cccttgaaaatctcaaacccattcaaaggtgacccaaccgctgttttcatcaactatgcc 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cccttgaaaatctcaaacccattcaaaggtgacccaaccgctgttttcatcaactatgcc 127

                                                                       
Query: 128 agcgttttcgttgttttttatggtttaaagaatttcatcgtcccacatcacccacatcaa 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 agcgttttcgttgttttttatggtttaaagaatttcatcgtcccacatcacccacatcaa 187

                                                                       
Query: 188 gatgttatttacccatacatgaaatcaaaaagaagaactttagcttttatgtttgaaaaa 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 gatgttatttacccatacatgaaatcaaaaagaagaactttagcttttatgtttgaaaaa 247

                                           
Query: 248 caataaaataataataataatattagatcatt 279
           ||||||||||||||||||||||||||||||||
Sbjct: 248 caataaaataataataataatattagatcatt 279


 Score = 83.8 bits (42), Expect = 1e-16
 Identities = 42/42 (100%)
 Strand = Plus / Plus

                                                     
Query: 360 ctcaaaaaataaaatgatcaccaataataataatactttaac 401
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ctcaaaaaataaaatgatcaccaataataataatactttaac 401


 Score = 46.1 bits (23), Expect = 3e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 304 tagtttcttacgtttaaaaaaaa 326
           |||||||||||||||||||||||
Sbjct: 304 tagtttcttacgtttaaaaaaaa 326


>Contig-U09050-1 (Contig-U09050-1Q) /CSM_Contig/Contig-U09050-1Q.Seq.d
          Length = 1367

 Score = 50.1 bits (25), Expect = 2e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                         
Query: 241  tgaaaaacaataaaataataataataata 269
            ||||||||||| |||||||||||||||||
Sbjct: 1237 tgaaaaacaatcaaataataataataata 1265


>Contig-U14898-1 (Contig-U14898-1Q) /CSM_Contig/Contig-U14898-1Q.Seq.d
          Length = 257

 Score = 46.1 bits (23), Expect = 3e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 243 aaaaacaataaaataataataataata 269
           |||||||| ||||||||||||||||||
Sbjct: 201 aaaaacaacaaaataataataataata 227


 Score = 32.2 bits (16), Expect = 0.47
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 254 aataataataataata 269
           ||||||||||||||||
Sbjct: 215 aataataataataata 230


 Score = 32.2 bits (16), Expect = 0.47
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 254 aataataataataata 269
           ||||||||||||||||
Sbjct: 218 aataataataataata 233


 Score = 32.2 bits (16), Expect = 0.47
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 254 aataataataataata 269
           ||||||||||||||||
Sbjct: 224 aataataataataata 239


 Score = 32.2 bits (16), Expect = 0.47
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 254 aataataataataata 269
           ||||||||||||||||
Sbjct: 221 aataataataataata 236


 Score = 28.2 bits (14), Expect = 7.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 254 aataataataataa 267
           ||||||||||||||
Sbjct: 227 aataataataataa 240


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 41,223
Number of Sequences: 6905
Number of extensions: 41223
Number of successful extensions: 20314
Number of sequences better than 10.0: 2138
length of query: 440
length of database: 5,674,871
effective HSP length: 16
effective length of query: 424
effective length of database: 5,564,391
effective search space: 2359301784
effective search space used: 2359301784
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11. 7
Homology vs DNA 
Query= Contig-U06236-1 (Contig-U06236-1Q) /CSM_Contig/Contig-U06236-1Q.Seq.d
         (440 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ...   389   e-139  4
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...   389   e-138  4
(AU263979) Dictyostelium discoideum vegetative cDNA clone:VS...   389   e-134  3
(AU265676) Dictyostelium discoideum vegetative cDNA clone:VS...   389   e-127  2
(AU263548) Dictyostelium discoideum vegetative cDNA clone:VS...   389   e-127  2
(AU269167) Dictyostelium discoideum vegetative cDNA clone:VS...   389   e-127  2
(AU265400) Dictyostelium discoideum vegetative cDNA clone:VS...   389   e-127  2
(AU265450) Dictyostelium discoideum vegetative cDNA clone:VS...   389   e-127  2
(AU265263) Dictyostelium discoideum vegetative cDNA clone:VS...   389   e-127  2
(AU263064) Dictyostelium discoideum vegetative cDNA clone:VS...   389   e-127  2
(AU267693) Dictyostelium discoideum vegetative cDNA clone:VS...   371   e-121  2
(AU265685) Dictyostelium discoideum vegetative cDNA clone:VS...   389   e-108  2
(AU265677) Dictyostelium discoideum vegetative cDNA clone:VS...   311   1e-80  1
(AU263980) Dictyostelium discoideum vegetative cDNA clone:VS...   220   3e-76  2
(AU267619) Dictyostelium discoideum vegetative cDNA clone:VS...   163   3e-57  2
(AU267692) Dictyostelium discoideum vegetative cDNA clone:VS...   101   1e-53  3
(AU265264) Dictyostelium discoideum vegetative cDNA clone:VS...   111   1e-43  2
(AU263549) Dictyostelium discoideum vegetative cDNA clone:VS...    98   4e-43  3
(AU265451) Dictyostelium discoideum vegetative cDNA clone:VS...    98   2e-42  3
(AU267620) Dictyostelium discoideum vegetative cDNA clone:VS...   105   6e-42  2
(AU265401) Dictyostelium discoideum vegetative cDNA clone:VS...    98   5e-33  2
(AU261408) Dictyostelium discoideum vegetative cDNA clone:VS...    84   9e-31  3
(AU269168) Dictyostelium discoideum vegetative cDNA clone:VS...    98   4e-26  3
(AU265686) Dictyostelium discoideum vegetative cDNA clone:VS...    88   3e-18  2
(AU269829) Dictyostelium discoideum vegetative cDNA clone:VS...    44   5e-07  3
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    48   2e-06  3
(BX004888) Zebrafish DNA sequence from clone DKEY-8F21 in li...    40   2e-04  7
(DU870733) 101782 Tomato HindIII BAC Library Solanum lycoper...    58   3e-04  1
(CT633838) Danio rerio EST, clone ZF_mu_63d05 3'.                  40   3e-04  3
(ET094721) QM0AAA21CE05FM1 CCL1 Citrus clementina genomic cl...    48   5e-04  3
(BB974493) Plasmodium berghei strain ANKA cDNA clone:OK00430...    40   9e-04  3
(AM472230) Vitis vinifera contig VV78X101704.26, whole genom...    42   0.001  4
(CU633973) Zebrafish DNA sequence from clone CH73-89A11 in l...    56   0.001  1
(AC121171) Rattus norvegicus clone CH230-58J3, *** SEQUENCIN...    56   0.001  1
(AC097691) Rattus norvegicus clone CH230-61C22, *** SEQUENCI...    56   0.001  1
(DH679322) Rattus norvegicus DNA, BAC clone: RNB1-232A10, 3'...    56   0.001  1
(DH648611) Rattus norvegicus DNA, BAC clone: RNB1-190M15, 3'...    56   0.001  1
(CR812466) Zebrafish DNA sequence from clone CH211-269M1 in ...    50   0.001  2
(EG410350) SAAH-aaa51g07.b1 Agen 0058 Schmidtea mediterranea...    42   0.001  2
(CT602068) Danio rerio EST, clone ZF_mu_89n23 3'.                  52   0.002  2
(FH088831) CHO_OF3034xg11r1.ab1 CHO_OF3 Nicotiana tabacum ge...    52   0.002  2
(FH508734) CHO_OF4703xo17r1.ab1 CHO_OF4 Nicotiana tabacum ge...    52   0.002  2
(BX088692) Zebrafish DNA sequence from clone CH211-208A20 in...    42   0.003  6
(AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2...    42   0.003  5
(EY328033) CAWY13032.rev CAWY Helobdella robusta Subtracted ...    42   0.004  2
(CU179659) Zebrafish DNA sequence from clone CH211-44H21.          54   0.004  1
(CR936278) Zebrafish DNA sequence from clone CH211-46O5 in l...    54   0.004  1
(AC169517) Medicago truncatula chromosome 8 clone mth2-143b7...    54   0.004  1
(AC148763) Medicago truncatula chromosome 8 clone mth2-29o24...    54   0.004  1
(CG815964) SOYDI76TH LargeInsertSoybeanGenLib Glycine max ge...    54   0.004  1
(AC116551) Dictyostelium discoideum chromosome 2 map complem...    52   0.005  2
(EY331330) CAWY4111.rev CAWY Helobdella robusta Subtracted E...    48   0.005  2
(AZ997253) 2M0283P09R Mouse 10kb plasmid UUGC2M library Mus ...    50   0.006  2
(CT687203) Danio rerio EST, clone ZF_mu_165p01 3'.                 34   0.006  3
(AY068502) Schmidtea mediterranea clone H.56.1c unknown mRNA...    46   0.006  2
(BX235876) Danio rerio genomic clone DKEY-244J10, genomic su...    50   0.006  2
(AM462431) Vitis vinifera contig VV78X158466.4, whole genome...    50   0.006  2
(BM495092) IpCGBr1_4_E11_22 Ictalurus punctatus Brain1 prima...    50   0.007  2
(EY333545) CAWY5763.rev CAWY Helobdella robusta Subtracted E...    48   0.007  2
(EY360914) CAWZ7436.rev CAWZ Helobdella robusta Primary Late...    48   0.007  2
(CT623871) Danio rerio EST, clone ZF_mu_68g13 5'.                  42   0.007  3
(EY327440) CAWY12628.rev CAWY Helobdella robusta Subtracted ...    48   0.007  2
(ET090366) QM0AAA15BB09RM1 CCL1 Citrus clementina genomic cl...    46   0.007  2
(EY323513) CAWX9042.rev CAWX Helobdella robusta Primary Earl...    48   0.007  2
(DE329599) Bombyx mori genomic DNA, BAC clone:BES_655_M18.         44   0.007  2
(EY293756) CAWX11304.rev CAWX Helobdella robusta Primary Ear...    48   0.008  2
(EY339133) CAWY948.rev CAWY Helobdella robusta Subtracted Ea...    48   0.008  2
(DW446361) HHAGE044091 Human liver regeneration after partia...    48   0.008  2
(CT422327) Sus scrofa genomic clone PigE-40P5, genomic surve...    50   0.008  2
(EY325482) CAWY10962.rev CAWY Helobdella robusta Subtracted ...    48   0.008  2
(EY333374) CAWY565.rev CAWY Helobdella robusta Subtracted Ea...    48   0.008  2
(DE234150) Trifolium pratense DNA, clone:RCG28513.                 36   0.008  3
(CT422326) Sus scrofa genomic clone PigE-40P4, genomic surve...    50   0.008  2
(EY308837) CAWX21252.rev CAWX Helobdella robusta Primary Ear...    48   0.008  2
(DE232836) Trifolium pratense DNA, clone:RCG26666.                 36   0.008  3
(DE232727) Trifolium pratense DNA, clone:RCG26540.                 36   0.008  3
(DE230652) Trifolium pratense DNA, clone:RCG24031.                 36   0.008  3
(DE233228) Trifolium pratense DNA, clone:RCG27136.                 36   0.008  3
(DE232576) Trifolium pratense DNA, clone:RCG26361.                 36   0.008  3
(DE232498) Trifolium pratense DNA, clone:RCG26267.                 36   0.008  3
(DE232386) Trifolium pratense DNA, clone:RCG26135.                 36   0.008  3
(DE231990) Trifolium pratense DNA, clone:RCG25666.                 36   0.008  3
(DE231886) Trifolium pratense DNA, clone:RCG25545.                 36   0.008  3
(DE231852) Trifolium pratense DNA, clone:RCG25509.                 36   0.008  3
(DE231851) Trifolium pratense DNA, clone:RCG25508.                 36   0.008  3
(DE231743) Trifolium pratense DNA, clone:RCG25375.                 36   0.008  3
(DE231621) Trifolium pratense DNA, clone:RCG25228.                 36   0.008  3
(DE231169) Trifolium pratense DNA, clone:RCG24661.                 36   0.008  3
(DE230360) Trifolium pratense DNA, clone:RCG23690.                 36   0.008  3
(DE232415) Trifolium pratense DNA, clone:RCG26168.                 36   0.009  3
(EH013710) USDA-FP_186483 Lysiphlebus testaceipes adult whol...    42   0.009  3
(AC115607) Dictyostelium discoideum chromosome 2 map 4559693...    38   0.009  3
(CR774200) Zebrafish DNA sequence from clone CH211-188G24 in...    52   0.011  2
(AM464192) Vitis vinifera contig VV78X272352.9, whole genome...    38   0.011  3
(BX927362) Zebrafish DNA sequence from clone CH211-170N20 in...    40   0.011  2
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084...    50   0.012  2
(BX255922) Zebrafish DNA sequence from clone CH211-125A15 in...    50   0.012  4
(AL844506) Plasmodium falciparum chromosome  7.                    44   0.012  3
(BI507605) BB170001A10C11.5 Bee Brain Normalized/Subtracted ...    48   0.012  2
(BJ432057) Dictyostelium discoideum cDNA clone:ddv17a15, 3' ...    42   0.013  3

>(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 map
             2779865-2840915, *** SEQUENCING IN PROGRESS ***.
          Length = 61052

 Score =  389 bits (196), Expect(4) = e-139
 Identities = 196/196 (100%)
 Strand = Plus / Minus


Query: 83    aacccattcaaaggtgacccaaccgctgttttcatcaactatgccagcgttttcgttgtt 142
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39507 aacccattcaaaggtgacccaaccgctgttttcatcaactatgccagcgttttcgttgtt 39448


Query: 143   ttttatggtttaaagaatttcatcgtcccacatcacccacatcaagatgttatttaccca 202
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39447 ttttatggtttaaagaatttcatcgtcccacatcacccacatcaagatgttatttaccca 39388


Query: 203   tacatgaaatcaaaaagaagaactttagcttttatgtttgaaaaacaataaaataataat 262
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39387 tacatgaaatcaaaaagaagaactttagcttttatgtttgaaaaacaataaaataataat 39328


Query: 263   aataatattagatcat 278
             ||||||||||||||||
Sbjct: 39327 aataatattagatcat 39312

 Score = 83.8 bits (42), Expect(4) = e-139
 Identities = 42/42 (100%)
 Strand = Plus / Minus


Query: 360   ctcaaaaaataaaatgatcaccaataataataatactttaac 401
             ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39230 ctcaaaaaataaaatgatcaccaataataataatactttaac 39189

 Score = 77.8 bits (39), Expect(4) = e-139
 Identities = 39/39 (100%)
 Strand = Plus / Minus


Query: 35    aacacgttcaaaataaatcactcattacactcgcccttg 73
             |||||||||||||||||||||||||||||||||||||||
Sbjct: 39951 aacacgttcaaaataaatcactcattacactcgcccttg 39913

 Score = 46.1 bits (23), Expect(4) = e-139
 Identities = 23/23 (100%)
 Strand = Plus / Minus


Query: 304   tagtttcttacgtttaaaaaaaa 326
             |||||||||||||||||||||||
Sbjct: 39286 tagtttcttacgtttaaaaaaaa 39264

 Score = 38.2 bits (19), Expect(3) = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus


Query: 254   aataataataataatatta 272
             |||||||||||||||||||
Sbjct: 22136 aataataataataatatta 22154

 Score = 32.2 bits (16), Expect(3) = 4.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus


Query: 379   accaataataataata 394
             ||||||||||||||||
Sbjct: 36307 accaataataataata 36322

 Score = 28.2 bits (14), Expect(3) = 4.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus


Query: 149   ggtttaaagaattt 162
             ||||||||||||||
Sbjct: 15525 ggtttaaagaattt 15538

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 591,288,174
Number of extensions: 52111923
Number of successful extensions: 10661328
Number of sequences better than 10.0: 7129
Length of query: 440
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 417
Effective length of database: 93,106,754,628
Effective search space: 38825516679876
Effective search space used: 38825516679876
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 6.21
Homology vs Protein 
Query= Contig-U06236-1 (Contig-U06236-1Q) /CSM_Contig/Contig-U06236-1Q.Seq.d
         (440 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117070_21(AC117070|pid:none) Dictyostelium discoideum chromoso...   122   5e-27
CR522870_2665(CR522870|pid:none) Desulfotalea psychrophila LSv54...    34   1.8
CP000264_958(CP000264|pid:none) Jannaschia sp. CCS1, complete ge...    32   8.9

>AC117070_21(AC117070|pid:none) Dictyostelium discoideum chromosome
           2 map 2097701-2233941 strain AX4, complete sequence.
           &AC123513_14(AC123513|pid:none)
          Length = 76

 Score =  122 bits (305), Expect = 5e-27
 Identities = 56/56 (100%), Positives = 56/56 (100%)
 Frame = +2

Query: 83  NPFKGDPTAVFINYASVFVVFYGLKNFIVPHHPHQDVIYPYMKSKRRTLAFMFEKQ 250
           NPFKGDPTAVFINYASVFVVFYGLKNFIVPHHPHQDVIYPYMKSKRRTLAFMFEKQ
Sbjct: 21  NPFKGDPTAVFINYASVFVVFYGLKNFIVPHHPHQDVIYPYMKSKRRTLAFMFEKQ 76

 Score = 47.8 bits (112), Expect = 1e-04
 Identities = 27/67 (40%), Positives = 33/67 (49%)
 Frame = +1

Query: 34  QHVQNKSLITLALENLKPIQR*PNRCFHQLCQRFRCFLWFKEFHRPTSPTSRCYLPIHEI 213
           +HVQNKSLITLALENL P +  P   F      F  F   K F  P  P      P  +
Sbjct: 5   KHVQNKSLITLALENLNPFKGDPTAVFINYASVFVVFYGLKNFIVPHHPHQDVIYPYMKS 64

Query: 214 KKKNFSF 234
           K++  +F
Sbjct: 65  KRRTLAF 71

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 466,056,423
Number of extensions: 8064837
Number of successful extensions: 17370
Number of sequences better than 10.0: 3
Number of HSP's gapped: 17369
Number of HSP's successfully gapped: 4
Length of query: 146
Length of database: 1,040,966,779
Length adjustment: 109
Effective length of query: 37
Effective length of database: 691,699,714
Effective search space: 25592889418
Effective search space used: 25592889418
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)
PSORT 

 psg: 0.75  gvh: 0.34  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.49  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	  4.0 %: cytoskeletal

>> prediction for Contig-U06236-1 is mit
VS (DIR, S) 13
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0