| Contig-U06213-1 |
| Contig ID |
Contig-U06213-1 |
| Contig update |
2001. 8.30 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
525 |
| Chromosome number (1..6, M) |
3 |
| Chromosome length |
6358359 |
| Start point |
4973211 |
| End point |
4973734 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
2 |
| Number of EST |
3 |
| Link to clone list |
U06213 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11. 7 |
| Homology vs DNA |
|
| protein update |
2009. 6.21 |
| Homology vs Protein |
Query= Contig-U06213-1 (Contig-U06213-1Q) /CSM_Contig/Contig-U06213-1Q.Seq.d
(525 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(Q54TE7) RecName: Full=GPN-loop GTPase 2 homolog; AltName: Full=... 325 5e-88
EU968965_1(EU968965|pid:none) Zea mays clone 325263 ATP binding ... 146 3e-34
EU962167_1(EU962167|pid:none) Zea mays clone 240711 ATP binding ... 146 3e-34
BT034798_1(BT034798|pid:none) Zea mays full-length cDNA clone ZM... 146 3e-34
AK121253_1(AK121253|pid:none) Oryza sativa Japonica Group cDNA c... 145 4e-34
AK221541_1(AK221541|pid:none) Arabidopsis thaliana mRNA for puta... 143 3e-33
AM475696_5(AM475696|pid:none) Vitis vinifera contig VV78X042996.... 139 4e-32
BC152270_1(BC152270|pid:none) Danio rerio GPN-loop GTPase 2, mRN... 137 2e-31
(Q6PUR6) RecName: Full=GPN-loop GTPase 2; AltName: Full=ATP-bind... 134 1e-30
BT077343_1(BT077343|pid:none) Lepeophtheirus salmonis clone lsal... 127 2e-28
AY335563_1(AY335563|pid:none) Synthetic construct Homo sapiens h... 126 4e-28
(Q4R579) RecName: Full=GPN-loop GTPase 2; AltName: Full=ATP-bind... 126 4e-28
BC008634_1(BC008634|pid:none) Homo sapiens GPN-loop GTPase 2, mR... 126 4e-28
AL627228_10(AL627228|pid:none) Mouse DNA sequence from clone RP2... 125 6e-28
AL627228_11(AL627228|pid:none) Mouse DNA sequence from clone RP2... 125 6e-28
(Q8VEJ1) RecName: Full=GPN-loop GTPase 2; AltName: Full=ATP-bind... 125 8e-28
(Q58DD9) RecName: Full=GPN-loop GTPase 2; AltName: Full=ATP-bind... 124 1e-27
BT075926_1(BT075926|pid:none) Caligus rogercresseyi clone crog-e... 123 3e-27
BC041519_1(BC041519|pid:none) Xenopus laevis hypothetical protei... 122 5e-27
(Q66KF6) RecName: Full=GPN-loop GTPase 2; AltName: Full=ATP-bind... 122 5e-27
(Q5BJ53) RecName: Full=GPN-loop GTPase 2; AltName: Full=ATP-bind... 117 2e-25
CR382130_799(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 115 5e-25
AE017356_209(AE017356|pid:none) Cryptococcus neoformans var. neo... 111 9e-24
AE014296_2407(AE014296|pid:none) Drosophila melanogaster chromos... 108 6e-23
(Q9UTL7) RecName: Full=GPN-loop GTPase 2 homolog; AltName: Full=... 108 1e-22
CP000586_16(CP000586|pid:none) Ostreococcus lucimarinus CCE9901 ... 104 1e-21
CU928178_513(CU928178|pid:none) Zygosaccharomyces rouxii strain ... 103 3e-21
AM920436_2046(AM920436|pid:none) Penicillium chrysogenum Wiscons... 102 6e-21
AP007157_188(AP007157|pid:none) Aspergillus oryzae RIB40 genomic... 101 1e-20
CU928168_504(CU928168|pid:none) Kluyveromyces thermotolerans str... 99 5e-20
CP001324_17(CP001324|pid:none) Micromonas sp. RCC299 chromosome ... 99 8e-20
CP000499_237(CP000499|pid:none) Pichia stipitis CBS 6054 chromos... 94 2e-18
U97196_2(U97196|pid:none) Caenorhabditis elegans cosmid B0207, c... 88 1e-16
A87790(A87790)protein B0207.6 [imported] - Caenorhabditis elegans 88 1e-16
AL034380_6(AL034380|pid:none) Human DNA sequence from clone RP1-... 87 2e-16
FN392319_199(FN392319|pid:none) Pichia pastoris GS115 chromosome... 87 3e-16
CR940347_211(CR940347|pid:none) Theileria annulata strain Ankara... 77 3e-13
CP000585_37(CP000585|pid:none) Ostreococcus lucimarinus CCE9901 ... 74 3e-12
BT033426_1(BT033426|pid:none) Zea mays full-length cDNA clone ZM... 72 6e-12
(Q54NK8) RecName: Full=GPN-loop GTPase 3 homolog; AltName: Full=... 71 2e-11
EF676417_1(EF676417|pid:none) Picea sitchensis clone WS02736_G16... 70 2e-11
AP008209_1408(AP008209|pid:none) Oryza sativa (japonica cultivar... 69 5e-11
(Q4PF70) RecName: Full=Transcription factor FET5; AltName: Full=... 68 1e-10
(Q6CQA6) RecName: Full=Transcription factor FET5; AltName: Full=... 68 2e-10
AK242594_1(AK242594|pid:none) Oryza sativa Japonica Group cDNA, ... 68 2e-10
AC090882_17(AC090882|pid:none) Oryza sativa chromosome 3 BAC OSJ... 68 2e-10
BT081096_1(BT081096|pid:none) Caligus clemensi clone ccle-evs-51... 67 2e-10
CR954205_34(CR954205|pid:none) Ostreococcus tauri strain OTTH059... 66 5e-10
(Q9UHW5) RecName: Full=GPN-loop GTPase 3; AltName: Full=ATP-bind... 65 8e-10
(Q6CBB5) RecName: Full=Transcription factor FET5; AltName: Full=... 65 8e-10
BX537973_1(BX537973|pid:none) Homo sapiens mRNA; cDNA DKFZp686I0... 65 8e-10
AF117229_1(AF117229|pid:none) Homo sapiens protein x 0004 mRNA, ... 65 8e-10
AM393009_1(AM393009|pid:none) Synthetic construct Homo sapiens c... 65 8e-10
EF148692_1(EF148692|pid:none) Populus trichocarpa x Populus delt... 64 2e-09
(Q6ZM63) RecName: Full=GPN-loop GTPase 3; AltName: Full=ATP-bind... 64 2e-09
BC152613_1(BC152613|pid:none) Danio rerio GPN-loop GTPase 3, mRN... 64 2e-09
(Q5A0W6) RecName: Full=Transcription factor FET5; AltName: Full=... 64 3e-09
CP001574_654(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 63 4e-09
(O14443) RecName: Full=Transcription factor fet5; AltName: Full=... 63 5e-09
AE014297_575(AE014297|pid:none) Drosophila melanogaster chromoso... 63 5e-09
(Q9D3W4) RecName: Full=GPN-loop GTPase 3; AltName: Full=ATP-bind... 62 9e-09
DQ399471_1(DQ399471|pid:none) Ictalurus punctatus clone SGGC01 h... 60 2e-08
AP007169_294(AP007169|pid:none) Aspergillus oryzae RIB40 genomic... 60 2e-08
BX538352_110(BX538352|pid:none) Cryptosporidium parvum chromosom... 60 3e-08
BT078995_1(BT078995|pid:none) Esox lucius clone eluc-evq-532-125... 60 3e-08
(Q6R518) RecName: Full=GPN-loop GTPase 3; AltName: Full=ATP-bind... 60 4e-08
BT074132_1(BT074132|pid:none) Oncorhynchus mykiss clone omyk-evo... 59 9e-08
AM920431_439(AM920431|pid:none) Penicillium chrysogenum Wisconsi... 56 5e-07
(Q4V7Z0) RecName: Full=GPN-loop GTPase 3; AltName: Full=ATP-bind... 56 6e-07
BX842634_8(BX842634|pid:none) Neurospora crassa DNA linkage grou... 55 8e-07
AL844509_485(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 55 1e-06
(Q28I42) RecName: Full=GPN-loop GTPase 3; AltName: Full=ATP-bind... 54 2e-06
CR940352_227(CR940352|pid:none) Theileria annulata strain Ankara... 54 2e-06
FN357721_11(FN357721|pid:none) Schistosoma mansoni genome sequen... 53 5e-06
CU633899_259(CU633899|pid:none) Podospora anserina genomic DNA c... 52 7e-06
AL590447_54(AL590447|pid:none) chromosome VII of strain GB-M1 of... 48 1e-04
(Q5KLN2) RecName: Full=Transcription factor FET5; AltName: Full=... 47 3e-04
CP000882_66(CP000882|pid:none) Hemiselmis andersenii chromosome ... 46 5e-04
DQ213098_1(DQ213098|pid:none) Taeniopygia guttata clone 0058P001... 45 0.001
AY161266_1(AY161266|pid:none) Acanthamoeba culbertsoni ATP/GTP-b... 43 0.005
AC135420_4(AC135420|pid:none) Oryza sativa (japonica cultivar-gr... 38 0.13
AM443849_4(AM443849|pid:none) Vitis vinifera contig VV79X004539.... 38 0.13
AM494963_50(AM494963|pid:none) Leishmania braziliensis chromosom... 37 0.29
(Q45UF7) RecName: Full=Protein VP3; Includes: RecName: Full=mR... 37 0.38
AM910991_2(AM910991|pid:none) Plasmodium knowlesi strain H chrom... 37 0.38
CP000728_2737(CP000728|pid:none) Clostridium botulinum F str. La... 37 0.38
AY864330_147(AY864330|pid:none) Chrysodeixis chalcites nucleopol... 36 0.50
AE013599_3583(AE013599|pid:none) Drosophila melanogaster chromos... 36 0.50
AY029705_1(AY029705|pid:none) Drosophila melanogaster leucine ri... 36 0.50
AE013599_3582(AE013599|pid:none) Drosophila melanogaster chromos... 36 0.50
AB169005_1(AB169005|pid:none) Macaca fascicularis testis cDNA, c... 36 0.65
AF167366_1(AF167366|pid:none) Lepeophtheirus salmonis T-complex ... 35 0.85
AY057480_1(AY057480|pid:none) Arabidopsis thaliana AT5g24360/K16... 35 0.85
CP000282_330(CP000282|pid:none) Saccharophagus degradans 2-40, c... 35 0.85
EF468629_1(EF468629|pid:none) Bacillus thuringiensis isolate DAB... 35 1.1
CP001612_517(CP001612|pid:none) Rickettsia africae ESF-5, comple... 35 1.5
AP007169_276(AP007169|pid:none) Aspergillus oryzae RIB40 genomic... 35 1.5
AE014187_763(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 35 1.5
CP000766_694(CP000766|pid:none) Rickettsia rickettsii str. Iowa,... 35 1.5
AE006914_652(AE006914|pid:none) Rickettsia conorii str. Malish 7... 35 1.5
(Q2RFU7) RecName: Full=Arginyl-tRNA synthetase; EC=6.1.... 35 1.5
AB384179_1(AB384179|pid:none) Synthetic construct DNA, clone: pF... 34 1.9
CP000395_312(CP000395|pid:none) Borrelia afzelii PKo, complete g... 34 1.9
CP001205_340(CP001205|pid:none) Borrelia burgdorferi ZS7, comple... 34 1.9
AP006841_477(AP006841|pid:none) Bacteroides fragilis YCH46 DNA, ... 34 1.9
T25095(T25095) hypothetical protein T22A3.5 - Caenorhabditis ele... 34 1.9
CR626927_406(CR626927|pid:none) Bacteroides fragilis NCTC 9343, ... 34 1.9
CP000383_55(CP000383|pid:none) Cytophaga hutchinsonii ATCC 33406... 34 2.5
AK069430_1(AK069430|pid:none) Oryza sativa Japonica Group cDNA c... 34 2.5
DQ265366_1(DQ265366|pid:none) Plasmodium falciparum isolate Pf15... 34 2.5
AL034560_5(AL034560|pid:none) Plasmodium falciparum MAL3P8, comp... 34 2.5
EF468001_1(EF468001|pid:none) Halobacillus dabanensis strain D-8... 34 2.5
AE000666_495(AE000666|pid:none) Methanothermobacter thermautotro... 34 2.5
AE017308_438(AE017308|pid:none) Mycoplasma mobile 163K complete ... 34 2.5
AL034559_4(AL034559|pid:none) Plasmodium falciparum MAL3P7, comp... 34 2.5
CP000013_307(CP000013|pid:none) Borrelia garinii PBi, complete g... 34 2.5
DQ265396_1(DQ265396|pid:none) Plasmodium falciparum isolate Pf15... 34 2.5
CP001083_2943(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 33 3.2
T18403(T18403) asparagine/aspartate rich protein - malaria paras... 33 3.2
CP001581_3015(CP001581|pid:none) Clostridium botulinum A2 str. K... 33 3.2
AL031745_57(AL031745|pid:none) Plasmodium falciparum DNA from MA... 33 3.2
AL844508_350(AL844508|pid:none) Plasmodium falciparum 3D7 chromo... 33 3.2
AP008210_670(AP008210|pid:none) Oryza sativa (japonica cultivar-... 33 4.2
FJ407003_1(FJ407003|pid:none) Plasmodium reichenowi isolate CDC-... 33 4.2
AL606621_16(AL606621|pid:none) Oryza sativa genomic DNA, chromos... 33 4.2
AP008955_5493(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 33 4.2
CR382138_300(CR382138|pid:none) Debaryomyces hansenii strain CBS... 33 4.2
CP001393_1957(CP001393|pid:none) Anaerocellum thermophilum DSM 6... 33 4.2
CP000683_473(CP000683|pid:none) Rickettsia massiliae MTU5, compl... 33 4.2
CP000568_574(CP000568|pid:none) Clostridium thermocellum ATCC 27... 33 4.2
AE014187_32(AE014187|pid:none) Plasmodium falciparum 3D7 chromos... 33 4.2
AE017194_1133(AE017194|pid:none) Bacillus cereus ATCC 10987, com... 33 4.2
CP001132_950(CP001132|pid:none) Acidithiobacillus ferrooxidans A... 33 5.5
CP001047_60(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, c... 33 5.5
CP000923_1007(CP000923|pid:none) Thermoanaerobacter sp. X514, co... 33 5.5
AL111168_224(AL111168|pid:none) Campylobacter jejuni subsp. jeju... 33 5.5
EF468626_1(EF468626|pid:none) Bacillus thuringiensis isolate DAB... 33 5.5
CP000768_203(CP000768|pid:none) Campylobacter jejuni subsp. doyl... 33 5.5
CP000745_60(CP000745|pid:none) Methanococcus maripaludis C7, com... 33 5.5
CP000507_905(CP000507|pid:none) Shewanella amazonensis SB2B, com... 33 5.5
EU443626_1(EU443626|pid:none) Human echovirus 11 strain 3123 pol... 33 5.5
CP000879_395(CP000879|pid:none) Petrotoga mobilis SJ95, complete... 33 5.5
AL035475_12(AL035475|pid:none) Plasmodium falciparum MAL4P2. &A... 33 5.5
CR382135_411(CR382135|pid:none) Debaryomyces hansenii strain CBS... 32 7.2
EU443625_1(EU443625|pid:none) Human echovirus 11 strain 3123/28 ... 32 7.2
CP000924_1069(CP000924|pid:none) Thermoanaerobacter pseudethanol... 32 7.2
AE014186_399(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 32 7.2
AC2480(AC2480) hypothetical protein alr7019 [imported] - Nostoc ... 32 7.2
M57683_1(M57683|pid:none) M.musculus PDGF alpha receptor (mPDGF-... 32 7.2
CP000923_1487(CP000923|pid:none) Thermoanaerobacter sp. X514, co... 32 7.2
AL844509_558(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 32 7.2
AL844506_3(AL844506|pid:none) Plasmodium falciparum 3D7 chromoso... 32 7.2
CP001348_2686(CP001348|pid:none) Clostridium cellulolyticum H10,... 32 7.2
CP001099_911(CP001099|pid:none) Chlorobaculum parvum NCIB 8327, ... 32 7.2
AE014187_149(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 32 7.2
AM270244_6(AM270244|pid:none) Aspergillus niger contig An11c0270... 32 7.2
CR382136_126(CR382136|pid:none) Debaryomyces hansenii strain CBS... 32 9.4
CP001074_1693(CP001074|pid:none) Rhizobium etli CIAT 652, comple... 32 9.4
CP000462_251(CP000462|pid:none) Aeromonas hydrophila subsp. hydr... 32 9.4
AE014187_478(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 32 9.4
CP001213_713(CP001213|pid:none) Bifidobacterium animalis subsp. ... 32 9.4
CP001365_1743(CP001365|pid:none) Halorubrum lacusprofundi ATCC 4... 32 9.4
(P52271) RecName: Full=Probable ATP-dependent RNA helicase MG308... 32 9.4
CP001172_491(CP001172|pid:none) Acinetobacter baumannii AB307-02... 32 9.4
AL445067_273(AL445067|pid:none) Thermoplasma acidophilum complet... 32 9.4
CP000776_147(CP000776|pid:none) Campylobacter hominis ATCC BAA-3... 32 9.4
CU928173_274(CU928173|pid:none) Zygosaccharomyces rouxii strain ... 32 9.4
(P29813) RecName: Full=Genome polyprotein; Contains: RecName: ... 32 9.4
CR382133_579(CR382133|pid:none) Debaryomyces hansenii strain CBS... 32 9.4
AC115599_8(AC115599|pid:none) Dictyostelium discoideum chromosom... 32 9.4
CP000521_3308(CP000521|pid:none) Acinetobacter baumannii ATCC 17... 32 9.4
CU458896_3386(CU458896|pid:none) Mycobacterium abscessus chromos... 32 9.4
>(Q54TE7) RecName: Full=GPN-loop GTPase 2 homolog; AltName:
Full=ATP-binding domain 1 family member B homolog;
Length = 315
Score = 325 bits (832), Expect = 5e-88
Identities = 161/161 (100%), Positives = 161/161 (100%)
Frame = +2
Query: 2 SLSGMVRIELPHINVLSKMDLIEQNGPLDFNLDFYTDVLDLKYLDAFLDKDPRLKKYSKL 181
SLSGMVRIELPHINVLSKMDLIEQNGPLDFNLDFYTDVLDLKYLDAFLDKDPRLKKYSKL
Sbjct: 155 SLSGMVRIELPHINVLSKMDLIEQNGPLDFNLDFYTDVLDLKYLDAFLDKDPRLKKYSKL 214
Query: 182 NKAIAGVIEDFSLVSFIPLNIMDKKSVANLIASIDKSNGYIYGSLDTNTAILEIQERETQ 361
NKAIAGVIEDFSLVSFIPLNIMDKKSVANLIASIDKSNGYIYGSLDTNTAILEIQERETQ
Sbjct: 215 NKAIAGVIEDFSLVSFIPLNIMDKKSVANLIASIDKSNGYIYGSLDTNTAILEIQERETQ 274
Query: 362 WNFDKYQETQEKYYKSYEDDDVIFENDQDEDYDEFSKYLNR 484
WNFDKYQETQEKYYKSYEDDDVIFENDQDEDYDEFSKYLNR
Sbjct: 275 WNFDKYQETQEKYYKSYEDDDVIFENDQDEDYDEFSKYLNR 315
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 710,926,484
Number of extensions: 14194171
Number of successful extensions: 62348
Number of sequences better than 10.0: 172
Number of HSP's gapped: 61406
Number of HSP's successfully gapped: 174
Length of query: 175
Length of database: 1,040,966,779
Length adjustment: 120
Effective length of query: 55
Effective length of database: 656,452,579
Effective search space: 36104891845
Effective search space used: 36104891845
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
|
| PSORT |
|
| VS (DIR, S) |
2 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |